Citrus Sinensis ID: 018164

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL
Secondary Structure (PSIPRED)
cEEccHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEccHHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHHcccccEEEEcccccHHHcccccEEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEEEcccccccEEccccccHHHHHHHHHHHccccccccccHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHcccccEEEcccHHHHHHHcccccccccEEEEEEEcccccEEccccccHHHHHHHHHHccccEEEEEccccHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHcccccccccEEEEEccccccccEEccccccHHHHHHHHHHcccccccccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
MRTNTVNEAEEFLKKYQTFVLGMfkkfegsdyeEFVKTaaadneiqfVETSNFEVAKvlypdikstdhflgivksepdrytgyeeTFIMDKILQFlnynkfplvtkltdinsasvhsspikLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVdiadedlakpfltlfgleeskntvVTAFDNKAISKFLlesdltpsnIEEFCSRLLhgtltpylksqpipdntnanVQIVVGKTFDDLVLNSHKDVLlevytpwcvtcETTSKQIEKLAKHFKGLDNLVIAKIDasanehpklqveeyptllfypagdkanpikvsarSSSKNIAAFIKEQLkekdqspkdeqwkekdqapkdel
Flexible Loop (DISEMBL)
mrtntvneaeEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPdikstdhflgivksepdRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEqlkekdqspkdeqwkekdqapkdel
Low Complexity Region (SEG)
MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL
Disordered region (IsUnstruct)
**********EFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAG************************************************
Disordered Region (DISOPRED)
MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC*************************QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI***************************
Disordered Region (DISEMBL)
********AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL***********************
Disordered Region (DISPRO)
*RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q66GQ3	534	Protein disulfide isomera	yes	no	0.963	0.649	0.603	1e-124
A3KPF5	537	Protein disulfide isomera	no	no	0.955	0.640	0.615	1e-122
Q5WA72	533	Protein disulfide isomera	yes	no	0.938	0.634	0.538	1e-103
Q67IX6	563	Protein disulfide isomera	no	no	0.966	0.618	0.348	1e-57
Q9FF55	597	Protein disulfide isomera	no	no	0.908	0.547	0.338	2e-55
Q8VX13	579	Protein disulfide isomera	no	no	0.922	0.573	0.327	3e-55
Q2HWU2	510	Protein disulfide-isomera	N/A	no	0.827	0.584	0.318	2e-36
Q5R5B6	508	Protein disulfide-isomera	yes	no	0.827	0.586	0.318	4e-36
P05307	510	Protein disulfide-isomera	yes	no	0.827	0.584	0.318	7e-36
P21195	509	Protein disulfide-isomera	yes	no	0.825	0.583	0.311	7e-36

>sp|Q66GQ3|PDI16_ARATH Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/348 (60%), Positives = 282/348 (81%), Gaps = 1/348 (0%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFE-GSDYEEFVKTAAADNEIQFVETSNFEVAKVL 59
           ++ +TV+EA  FLKK+ TF+LG+F+K E  S ++EFVK A+ DNEIQFVETS+ +VAK+L
Sbjct: 186 IKLDTVDEASGFLKKHHTFILGLFEKSEDSSGHDEFVKAASLDNEIQFVETSSIDVAKLL 245

Query: 60  YPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP 119
           +P++K+ + F+G+VK+E ++YT Y+     +KI++FLN NKFPLVTKLT+ N+  V+SSP
Sbjct: 246 FPNLKTNNVFVGLVKTEAEKYTSYDGPCQAEKIVEFLNSNKFPLVTKLTESNTVRVYSSP 305

Query: 120 IKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 179
           +KLQV VF+K DD +SL +PLEDIAR FK K+M   +DI++E+LA PFLTLFG+E++K T
Sbjct: 306 VKLQVMVFSKTDDFESLAQPLEDIARKFKSKLMLIYIDISNENLAMPFLTLFGIEDAKKT 365

Query: 180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT 239
           VV AFDN   SK+LLESD +PSNIEEFC  L HGT++ Y KSQPIPDN NA+V  VVG+T
Sbjct: 366 VVAAFDNNLNSKYLLESDPSPSNIEEFCFGLAHGTVSAYYKSQPIPDNQNASVVAVVGRT 425

Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ 299
           FD++VL S ++VLLEV+TPWC+ CE  SKQ+EKL++HFKG +NLV A+IDASANEHPKL 
Sbjct: 426 FDEVVLRSSENVLLEVHTPWCINCEALSKQVEKLSQHFKGFENLVFARIDASANEHPKLT 485

Query: 300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           V++YPT+L Y  G+K NP+K+S +SS+K++A  I ++LK KDQS KDE
Sbjct: 486 VDDYPTILLYKTGEKENPLKLSTKSSAKDMAVLINKELKWKDQSGKDE 533

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|A3KPF5|PDI15_ARATH Protein disulfide isomerase-like 1-5 OS=Arabidopsis thaliana GN=PDIL1-5 PE=2 SV=1

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 275/346 (79%), Gaps = 2/346 (0%)

Query: 4   NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDI 63
           NTV+EA  FL KY TFVLG+F+KFEGS++ EFVK A +D+EIQF+ET + +VAK+L+PD+
Sbjct: 191 NTVDEAPRFLDKYHTFVLGLFEKFEGSEHNEFVKAAKSDDEIQFIETRDSDVAKLLFPDL 250

Query: 64  KSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQ 123
           KS + F+G+VK E +RYT Y+ ++ M+KIL+FL  NKFPL TKLT+ N+  V+SSP+KLQ
Sbjct: 251 KSNNVFIGLVKPEAERYTVYDGSYKMEKILEFLGSNKFPLFTKLTETNTVWVYSSPVKLQ 310

Query: 124 VYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183
           V +F+KADD + L +PLEDIAR FK K+MF  VDI +E+LA PFL LFG+E    TVV A
Sbjct: 311 VMLFSKADDFQKLAQPLEDIARKFKSKLMFIYVDITNENLAMPFLILFGIEAGNKTVVAA 370

Query: 184 FDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDL 243
           FDN   SK+LLESD +P++IEEFCS L HGT++ Y +S+P+PDN NA++  VVGKTFD L
Sbjct: 371 FDNNLNSKYLLESDPSPNSIEEFCSGLAHGTVSRYYRSEPVPDNENASIVTVVGKTFDGL 430

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEE- 302
           VLNS ++VLLEV+TPWCV CE  SKQIEKLAKHFKG +NLV A+IDASANEH KLQV++ 
Sbjct: 431 VLNSRENVLLEVHTPWCVNCEALSKQIEKLAKHFKGFENLVFARIDASANEHTKLQVDDK 490

Query: 303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ-LKEKDQSPKDE 347
           YP +L Y +G+K  P+K+S + S+K+IA FI E+ LK K+ S KDE
Sbjct: 491 YPIILLYKSGEKEKPLKLSTKLSAKDIAVFINEELLKPKNGSAKDE 536

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5WA72|PDI15_ORYSJ Protein disulfide isomerase-like 1-5 OS=Oryza sativa subsp. japonica GN=PDIL1-5 PE=2 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/342 (53%), Positives = 249/342 (72%), Gaps = 4/342 (1%)

Query: 2   RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYP 61
           R  + + AEEFLKK QTF +G+FK FEG++YEEFVK A ++NE+QFVET++  VAK+L+P
Sbjct: 180 RIQSKDSAEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFP 239

Query: 62  DIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIK 121
            I S + FLG+VKSEP+++  +   F   +I+QF+  NKFPL+T  TD+NS  V+ SPIK
Sbjct: 240 GIASEEQFLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIK 299

Query: 122 LQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181
           LQV+ FA+A D + L   ++++AR FK KIM   VD A+E LAKPFLTL+GLE  K T V
Sbjct: 300 LQVFTFAEAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPT-V 358

Query: 182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFD 241
           TAFD    +K+L+E+++   N+++FC  LL GTL PY +S+P+P+     ++ VVG+TFD
Sbjct: 359 TAFDTSKGTKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEEKGP-IEKVVGRTFD 417

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK--GLDNLVIAKIDASANEHPKLQ 299
             VL S ++V LEV+ PWCV CE  SK +EKLAKHF   G  NL  A+IDAS NEHPKLQ
Sbjct: 418 SSVLESPQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQ 477

Query: 300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341
           +  YPTLL YPA DK+NPIK+S +S+ K++A F+KE+L+  D
Sbjct: 478 INNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIAD 519

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 201/359 (55%), Gaps = 11/359 (3%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
           TV+EAE+ L      +L +     G+  +E    +  ++ I F +TSN +VAK+ + D  
Sbjct: 188 TVDEAEKILTGEDKAILAVLDSLSGAHSDEIAAASRLEDAINFYQTSNPDVAKLFHLDPA 247

Query: 65  STDHFLGIVK-SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQ 123
           +    L ++K  E ++ T Y+  F    I  F++ NK PLV  LT   + S+  +PIK Q
Sbjct: 248 AKRPSLVLLKKQEEEKLTFYDGPFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQ 307

Query: 124 VYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183
           + +F  A++    L   ++ +++FKGK++F  V+  +E++ +P    FG+   + TV+  
Sbjct: 308 ILLFVVANESSKFLPIFKEASKSFKGKLLFVFVERDNEEVGEPVANYFGITGQETTVLAY 367

Query: 184 FDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDL 243
             N+    F L+ +++  NI+ F    L   LTP+ KS+P+P++   +V+IVVGK  D +
Sbjct: 368 TGNEDARNFFLDGEISVENIKRFAEDFLEEKLTPFYKSEPVPESNEGDVKIVVGKNLDQI 427

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
           VL+  KD LLE+Y PWC  C+       KL KH +G+D+LVIAK+D +ANEHP+ + + +
Sbjct: 428 VLDESKDALLEIYAPWCGHCQELEPTYNKLGKHLRGIDSLVIAKMDGTANEHPRAKPDGF 487

Query: 304 PTLLFYPAGDKA-NPIKVSARSSSKNIAAFIKE------QLKEKDQSPKDEQWKEKDQA 355
           PT+LFYPAG K+  PI      +   +  FIK+      +LK  D S       EKDQ+
Sbjct: 488 PTILFYPAGKKSFEPITFEGDRTVVEMYKFIKKHASIPFKLKRPDSSATK---TEKDQS 543

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 193/331 (58%), Gaps = 4/331 (1%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
           T+++AE+ L      VLG      G ++++    + A++++ F +T N +VAK+ + D +
Sbjct: 216 TLDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAEDDVNFYQTVNPDVAKMFHLDPE 275

Query: 65  STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
           S    L +VK E ++ + ++  F+   ++ F++ NK  LV+  T   +  +  S IK Q+
Sbjct: 276 SKRPALVLVKKEEEKISHFDGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQL 335

Query: 125 YVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184
            +F   ++ + +L   ++ A++FKGK++F +VD+ +ED  KP    FG+  +   ++   
Sbjct: 336 LLFVTKNESEKVLTEFQEAAKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYT 395

Query: 185 DNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 244
            N+   K+  + ++    I+ F    L+  L P+ KS PIP+  + +V+IVVG  FD++V
Sbjct: 396 GNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPIPEKNDEDVKIVVGDNFDEIV 455

Query: 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYP 304
           L+  KDVLLEVY PWC  C+       KLAKH + +D+LVI K+D + NEHPK + E +P
Sbjct: 456 LDDSKDVLLEVYAPWCGHCQALEPMYNKLAKHLRSIDSLVITKMDGTTNEHPKAKAEGFP 515

Query: 305 TLLFYPAGDK-ANPIKVSARSSSKNIAAFIK 334
           T+LF+PAG+K + PI V    + + + AF K
Sbjct: 516 TILFFPAGNKTSEPITV---DTDRTVVAFYK 543

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1

 Score =  216 bits (549), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 193/333 (57%), Gaps = 1/333 (0%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
           T  EAE  L      V G      GS+ EE    +  ++++ F +T++ ++AK+   + +
Sbjct: 212 TKEEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLEDDLSFYQTASPDIAKLFEIETQ 271

Query: 65  STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
                L ++K E ++   ++  F    I +F++ NK PLV   T   ++ +  S +K Q+
Sbjct: 272 VKRPALVLLKKEEEKLARFDGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQL 331

Query: 125 YVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184
            +FAKA++ +  L  L ++A++FKGK +F  V + +ED  +     FG+  +   V+   
Sbjct: 332 ILFAKANESEKHLPTLREVAKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYT 391

Query: 185 DNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 244
            N+ + KF+L+ +LT +NI+      L   L P+ KS P+P+N + +V+++VG  FD++V
Sbjct: 392 GNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPENNDGDVKVIVGNNFDEIV 451

Query: 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYP 304
           L+  KDVLLE+Y PWC  C++      KL K+ KG+D+LV+AK+D ++NEHP+ + + +P
Sbjct: 452 LDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKADGFP 511

Query: 305 TLLFYPAGDKA-NPIKVSARSSSKNIAAFIKEQ 336
           T+LF+P G+K+ +PI V    +   +  F+K+ 
Sbjct: 512 TILFFPGGNKSFDPIAVDVDRTVVELYKFLKKH 544

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V      D    D 
Sbjct: 148 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD---KDG 204

Query: 69  FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF- 127
            +   K +  R   +E     + +L F+ YN+ PLV + T+  +  +    IK  + +F 
Sbjct: 205 VVLFKKFDEGR-NNFEGEVTKENLLDFIKYNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query: 128 -AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                D    L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct: 264 PKSVSDYDGKLSNFKTAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 322

Query: 186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
            + ++K+  ESD LT   I EFC R L G + P+L SQ +P++ +   V+++VGK F+++
Sbjct: 323 EEEMTKYKPESDELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEV 382

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
             + +K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct: 383 AFDENKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAIKVHSF 442

Query: 304 PTLLFYPA 311
           PTL F+PA
Sbjct: 443 PTLKFFPA 450

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R5B6|PDIA1_PONAB Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V      D    D 
Sbjct: 146 AESLVESSEVAVVGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD---KDG 202

Query: 69  FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF- 127
            +   K +  R   +E     + +L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct: 203 VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 261

Query: 128 -AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                D    L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct: 262 PKSVSDYDGKLSNFKTAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 320

Query: 186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
            + ++K+  ES+ LT   I EFC R L G + P+L SQ +PD+ +   V+++VGK F+D+
Sbjct: 321 EEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEDV 380

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
             +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct: 381 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 440

Query: 304 PTLLFYPA 311
           PTL F+PA
Sbjct: 441 PTLKFFPA 448

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F   A   ++I F  TSN +V      D    D 
Sbjct: 148 AEALVESSEVAVIGFFKDMESDSAKQFFLAAEVIDDIPFGITSNSDVFSKYQLD---KDG 204

Query: 69  FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF- 127
            +   K +  R   +E     +K+L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct: 205 VVLFKKFDEGR-NNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query: 128 -AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                D +  L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct: 264 PKSVSDYEGKLSNFKKAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 322

Query: 186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
            + ++K+  ESD LT   I EFC R L G + P+L SQ +PD+ +   V+++VGK F+++
Sbjct: 323 EEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEV 382

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
             +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct: 383 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 442

Query: 304 PTLLFYPA 311
           PTL F+PA
Sbjct: 443 PTLKFFPA 450

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P21195|PDIA1_RABIT Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1

 Score =  151 bits (381), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 165/311 (53%), Gaps = 14/311 (4%)

Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F+  A A ++I F  T++ +V        +   H
Sbjct: 147 AESLVESSEVAVIGFFKDVESDAAKQFLLAAEATDDIPFGLTASSDVFS------RYQVH 200

Query: 69  FLGIV--KSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYV 126
             G+V  K   +    +E     +K+L F+ +N+ PLV + T+  +  +    IK  + +
Sbjct: 201 QDGVVLFKKFDEGRNNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILL 260

Query: 127 F--AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184
           F    A D    L   +  A  FKGKI+F  +D +D    +  L  FGL++ +   V   
Sbjct: 261 FLPRSAADHDGKLSGFKQAAEGFKGKILFIFID-SDHADNQRILEFFGLKKEECPAVRLI 319

Query: 185 D-NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFD 241
              + ++K+  ESD LT   I EFC R L G + P+L SQ +P++ +   V+++VGK F+
Sbjct: 320 TLEEEMTKYKPESDELTAEGITEFCQRFLEGKIKPHLMSQELPEDWDRQPVKVLVGKNFE 379

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 301
           ++  +  K+V +E Y PWC  C+  +   +KL + +K   ++VIAK+D++ANE   ++V 
Sbjct: 380 EVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKEHQDIVIAKMDSTANEVEAVKVH 439

Query: 302 EYPTLLFYPAG 312
            +PTL F+PAG
Sbjct: 440 SFPTLKFFPAG 450

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
255549966	537	protein disulfide isomerase, putative [R	0.958	0.642	0.716	1e-143
224059090	538	predicted protein [Populus trichocarpa]	0.963	0.644	0.680	1e-137
255291798	523	protein disulfide isomerase L-3b [Glycin	0.955	0.657	0.682	1e-137
351728045	523	protein disulfide isomerase like protein	0.955	0.657	0.682	1e-137
351722113	520	protein disulfide isomerase like protein	0.963	0.667	0.682	1e-136
225442595	537	PREDICTED: protein disulfide isomerase-l	0.963	0.646	0.671	1e-134
357454941	520	Protein disulfide isomerase L-3b [Medica	0.963	0.667	0.662	1e-130
388493116	520	unknown [Medicago truncatula]	0.963	0.667	0.657	1e-128
449465264	537	PREDICTED: protein disulfide isomerase-l	0.963	0.646	0.612	1e-123
449516165	537	PREDICTED: protein disulfide isomerase-l	0.963	0.646	0.609	1e-123

>gi|255549966|ref|XP_002516034.1| protein disulfide isomerase, putative [Ricinus communis] gi|223544939|gb|EEF46454.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 298/346 (86%), Gaps = 1/346 (0%)

Query: 2   RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYP 61
           R NTV+EAE+FLK+Y  FVLG+F+KFEG DYEEFVK A ++NEIQFVETS+  VAK+L+P
Sbjct: 192 RLNTVSEAEKFLKEYHIFVLGLFEKFEGHDYEEFVKAAVSNNEIQFVETSDLMVAKILFP 251

Query: 62  DIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIK 121
           DI ST+ F+GIVKSEP+RYT YE TF M+KI QFL +NKFPLVT+L ++NS  V+SSPIK
Sbjct: 252 DIISTN-FIGIVKSEPERYTAYEGTFDMEKISQFLVHNKFPLVTRLNELNSVRVYSSPIK 310

Query: 122 LQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 181
           LQV VFAKADD K+L+EPL+++AR FK KIMF  +DIADE+ AKP LTLFGLE+S+NT+V
Sbjct: 311 LQVIVFAKADDFKNLIEPLQEVARKFKSKIMFIYIDIADENQAKPLLTLFGLEDSQNTLV 370

Query: 182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFD 241
            AFDN   SK+LLE D  PSNIE+FCSRLLHG+L+ Y KSQP+PDN  A++Q++VGKTFD
Sbjct: 371 IAFDNNMNSKYLLELDPAPSNIEDFCSRLLHGSLSTYYKSQPVPDNKEASIQVIVGKTFD 430

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 301
           DLVL+S K+VLLEV+TPWC+ CETTSKQIEKLAKHFKGLD+LV AKIDASANEHPK+QVE
Sbjct: 431 DLVLSSPKNVLLEVFTPWCINCETTSKQIEKLAKHFKGLDSLVFAKIDASANEHPKMQVE 490

Query: 302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           EYPTLLFYPA DKANPIK+S +SSSK +AA I + LK K+Q+ KDE
Sbjct: 491 EYPTLLFYPASDKANPIKLSTKSSSKELAAAINKHLKGKEQAAKDE 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059090|ref|XP_002299710.1| predicted protein [Populus trichocarpa] gi|222846968|gb|EEE84515.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/347 (68%), Positives = 288/347 (82%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R ++  EAE+F KKY  FVLG+F KFEG DYEEF+K A  DNEIQFVE S+  VAK+L+
Sbjct: 191 IRISSSVEAEDFQKKYHLFVLGLFDKFEGHDYEEFIKAATIDNEIQFVEVSSSAVAKILF 250

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           P+I + D+F+GIVKSEP++YT Y   F  D ILQFL YNKFPLVT LT++NSA V+SSP+
Sbjct: 251 PNINAKDNFIGIVKSEPEKYTAYGGIFEKDTILQFLEYNKFPLVTILTELNSARVYSSPV 310

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           KLQV VFA ADD K+L+ PL+++AR F  KIMF  +DIADE+ AKPFLTLFG+E+S+NTV
Sbjct: 311 KLQVIVFADADDFKNLIRPLQEVARKFISKIMFIYIDIADENQAKPFLTLFGIEDSENTV 370

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           VTAFDN+  SK+LLES+ T SNIEEFCSRLLHG+L+PY KSQPIPDN    +Q+VVGKT 
Sbjct: 371 VTAFDNRMSSKYLLESNPTSSNIEEFCSRLLHGSLSPYFKSQPIPDNKEKILQVVVGKTL 430

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           DDLVL+S K+VLLEVYTPWC++CETT+KQIEKLAKHFKG+DNLV A+IDASANEHPKL V
Sbjct: 431 DDLVLSSPKNVLLEVYTPWCISCETTTKQIEKLAKHFKGVDNLVFARIDASANEHPKLLV 490

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           ++YPTLLFYP GDK NP+K+S +SSSK++A  IK  L+ K+  PKDE
Sbjct: 491 DDYPTLLFYPVGDKENPVKLSTKSSSKDLATVIKSLLRAKEDVPKDE 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255291798|dbj|BAH89252.1| protein disulfide isomerase L-3b [Glycine max]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/347 (68%), Positives = 286/347 (82%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R  +V EAE+FL+KYQTF++G F KFEG DYEEFV  A +DNEIQFVET+  E+A+VLY
Sbjct: 176 IRIGSVTEAEKFLRKYQTFLIGRFDKFEGPDYEEFVSAAQSDNEIQFVETNQVELAQVLY 235

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK TD FLGIVKSEP+RYT Y+  F M+KIL+F++YNKFPLVTKLT++NS  V+SSPI
Sbjct: 236 PDIKPTDQFLGIVKSEPERYTAYDGAFTMNKILEFVDYNKFPLVTKLTEMNSIRVYSSPI 295

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           KLQV VFA  DD K+LLE L+D+A+ FK KIMF  VDI DE+LAKPFLTLFGLEESKNTV
Sbjct: 296 KLQVLVFANIDDFKNLLETLQDVAKTFKSKIMFIYVDINDENLAKPFLTLFGLEESKNTV 355

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SK+LLE+  T SNIEEFC+ L+ G+L+PY KSQPIPDNT ++V ++VGKTF
Sbjct: 356 VAAFDNAMSSKYLLETKPTQSNIEEFCNNLVQGSLSPYFKSQPIPDNTESSVHVIVGKTF 415

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           DD +L+S KDVLLEV+TPWC+ CE TSKQ+EKLAKH+KG  NL+ A+IDASANEHPKLQV
Sbjct: 416 DDEILSSEKDVLLEVFTPWCINCEATSKQVEKLAKHYKGSSNLIFARIDASANEHPKLQV 475

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
            +YPTLL Y A DKANPIK+S +SS K +AA I + +K K+Q  KDE
Sbjct: 476 NDYPTLLLYRADDKANPIKLSTKSSLKELAASINKYVKVKNQVVKDE 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728045|ref|NP_001238717.1| protein disulfide isomerase like protein precursor [Glycine max] gi|51848587|dbj|BAD42324.1| protein disulfide isomerase like protein [Glycine max]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/347 (68%), Positives = 285/347 (82%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R  +V EAE+FL+KYQTF++G F KFEG DYEEFV  A +DNEIQFVET+  E+A+VLY
Sbjct: 176 IRIGSVTEAEKFLRKYQTFLIGRFDKFEGPDYEEFVSAAQSDNEIQFVETNQVELAQVLY 235

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK TD FLGIVKSEP+RYT Y+  F M+KIL+F++YNKFPLVTKLT++NS  V+SSPI
Sbjct: 236 PDIKPTDQFLGIVKSEPERYTAYDGAFTMNKILEFVDYNKFPLVTKLTEMNSIRVYSSPI 295

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           KLQV VFA  DD K+LLE L+D+A+ FK KIMF  VDI DE+LAKPFLTLFGLEESKNTV
Sbjct: 296 KLQVLVFANIDDFKNLLETLQDVAKTFKSKIMFIYVDINDENLAKPFLTLFGLEESKNTV 355

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SK+LLE+  T SNIEEFC  L+ G+L+PY KSQPIPDNT ++V ++VGKTF
Sbjct: 356 VAAFDNAMSSKYLLETKPTQSNIEEFCDNLVQGSLSPYFKSQPIPDNTESSVHVIVGKTF 415

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           DD +L+S KDVLLEV+TPWC+ CE TSKQ+EKLAKH+KG  NL+ A+IDASANEHPKLQV
Sbjct: 416 DDEILSSEKDVLLEVFTPWCINCEATSKQVEKLAKHYKGSSNLIFARIDASANEHPKLQV 475

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
            +YPTLL Y A DKANPIK+S +SS K +AA I + +K K+Q  KDE
Sbjct: 476 NDYPTLLLYRADDKANPIKLSTKSSLKELAASINKYVKVKNQVVKDE 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722113|ref|NP_001235697.1| protein disulfide isomerase like protein precursor [Glycine max] gi|51848585|dbj|BAD42323.1| protein disulfide isomerase like protein [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/347 (68%), Positives = 286/347 (82%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R ++V EAE+FL KYQTF++G F+ FEG DYEEFV  A +DNEIQFVETS  E+A+VLY
Sbjct: 173 IRISSVAEAEKFLTKYQTFLIGRFENFEGPDYEEFVSAAKSDNEIQFVETSQVELAQVLY 232

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK TD FLGIVKSEP+RY+ Y+  FI++KIL+F++YNKFPLVTKLT++NS  V+SSPI
Sbjct: 233 PDIKPTDRFLGIVKSEPERYSAYDGAFILNKILEFVDYNKFPLVTKLTEMNSVRVYSSPI 292

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           KLQV VFA  DD K+LL+ L+D+A+ FK KIMF  VDI DE+LAKPFLTLFGLEESKNTV
Sbjct: 293 KLQVLVFANIDDFKNLLDTLQDVAKTFKSKIMFIYVDINDENLAKPFLTLFGLEESKNTV 352

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SK+LLES  T  NIEEFC+ L+ G+L+PY KSQPIPDNT A+V+ +VGKTF
Sbjct: 353 VGAFDNSMSSKYLLESKPTQINIEEFCNNLMQGSLSPYFKSQPIPDNTEASVRAIVGKTF 412

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           DD +L+S KDVLLEV+TPWC+ CE TSKQ+EKLAKH+KG  NL+ A+ DASANEHPKLQV
Sbjct: 413 DDEILSSKKDVLLEVFTPWCMNCEATSKQVEKLAKHYKGSSNLIFARTDASANEHPKLQV 472

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
            +YPTLLFY A DKANPIK+S +SS K +AA I + LK K+Q  KDE
Sbjct: 473 NDYPTLLFYRADDKANPIKLSTKSSLKELAASINKYLKVKNQVLKDE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442595|ref|XP_002279221.1| PREDICTED: protein disulfide isomerase-like 1-6 [Vitis vinifera] gi|297743253|emb|CBI36120.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/347 (67%), Positives = 289/347 (83%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R N+V EAEEFLKK+ TF +G+FKKF G +YEEFVK A + NEIQFVE ++ EVAKVL+
Sbjct: 190 IRINSVTEAEEFLKKHHTFAIGLFKKFVGCEYEEFVKAATSHNEIQFVEVNDIEVAKVLF 249

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           P+IK    FLG+VKSE +RYT YE TF MD+IL FL+YNKFPLVT LT++NS  V+SSP+
Sbjct: 250 PNIKPNSLFLGLVKSEMERYTTYEGTFEMDQILDFLDYNKFPLVTILTELNSIKVYSSPV 309

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           K QV+VFAKAD  K+LL+ L+D+AR F  KIM   VDI +++LAKPFLTLFGLE+S++T+
Sbjct: 310 KFQVFVFAKADAFKNLLKLLQDVARKFVSKIMIVYVDITEDNLAKPFLTLFGLEDSEDTI 369

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           VTAFDNK  SK+LLESD TPS IEEFCS LL GTL+P+ +SQ IPDN   +VQIVVGKTF
Sbjct: 370 VTAFDNKISSKYLLESDPTPSKIEEFCSGLLQGTLSPHFRSQAIPDNKEESVQIVVGKTF 429

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           D+LVL+  K+VLLEVY+PWC+ CETTSKQ++KLAKHFKGLDNL+ A+IDASANEHPKL+V
Sbjct: 430 DNLVLSGDKNVLLEVYSPWCIDCETTSKQMKKLAKHFKGLDNLIFARIDASANEHPKLKV 489

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           ++YPTLLFY A DK+NPIK+S +SSSK++AAFI + +  +DQ  KDE
Sbjct: 490 DDYPTLLFYKADDKSNPIKLSTKSSSKDLAAFINKNIGVQDQVSKDE 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454941|ref|XP_003597751.1| Protein disulfide isomerase L-3b [Medicago truncatula] gi|355486799|gb|AES68002.1| Protein disulfide isomerase L-3b [Medicago truncatula]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/347 (66%), Positives = 277/347 (79%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R +T   AEEFLKKY TF++G F KFEG +YEEFV  A +DNE QFV+ S  E+A+VLY
Sbjct: 173 IRISTEKAAEEFLKKYHTFLIGRFDKFEGPEYEEFVSAAKSDNETQFVDVSKVELAQVLY 232

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK T +FLGIVKSEP+RYT Y+  F +DKI++FL+YNKFPLVT+LT++NS SV+SSP 
Sbjct: 233 PDIKPTGNFLGIVKSEPERYTAYDGAFRLDKIMEFLSYNKFPLVTQLTEMNSVSVYSSPA 292

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           K QV+VFA  DD K+LL+ L+++AR FK KIMF  VDI DE+LAKPFLT+FGLEES NTV
Sbjct: 293 KHQVFVFANTDDFKNLLDSLQEVARTFKSKIMFIYVDINDENLAKPFLTMFGLEESTNTV 352

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SKFLLES  T SNIEEFCS+L+ G+L  Y KSQPIPDNT A VQ+VVGKTF
Sbjct: 353 VAAFDNGMSSKFLLESKPTRSNIEEFCSKLVQGSLLTYFKSQPIPDNTEAIVQVVVGKTF 412

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           D+ +LNS KDV+LEV+TPWC  CE TSKQ+EKLAKH+K   NL+ A+IDASANEHPKLQV
Sbjct: 413 DEEILNSKKDVVLEVFTPWCFNCEDTSKQVEKLAKHYKSSSNLIFARIDASANEHPKLQV 472

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
            ++PTLL Y A DK NPIK+S +SS K +AA I + +K KDQ  KDE
Sbjct: 473 NDFPTLLLYKANDKTNPIKLSTKSSLKELAASINKHVKVKDQVAKDE 519

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493116|gb|AFK34624.1| unknown [Medicago truncatula]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/347 (65%), Positives = 275/347 (79%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           +R +T   AEEFLKKY TF++G F KFEG +YEEFV  A +DNE QFV+ S  E+A+VLY
Sbjct: 173 IRISTEKAAEEFLKKYHTFLIGRFDKFEGPEYEEFVSAAKSDNETQFVDVSKVELAQVLY 232

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK T +FLGIVKSEP+RYT Y+  F +DKI++FL+YNKFPLVT+LT++NS SV+SSP 
Sbjct: 233 PDIKPTGNFLGIVKSEPERYTAYDGAFRLDKIMEFLSYNKFPLVTQLTEMNSVSVYSSPA 292

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           K QV+VFA  DD K+LL+ L+++AR FK KIM   VDI DE+LAKPFLT+FGLEES NTV
Sbjct: 293 KHQVFVFANTDDFKNLLDSLQEVARTFKSKIMLIYVDINDENLAKPFLTMFGLEESTNTV 352

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SKFLLES  T SNIEEFCS+L+ G+L  Y KSQPIPDNT A VQ+VVGKTF
Sbjct: 353 VAAFDNGMSSKFLLESKPTRSNIEEFCSKLVQGSLLTYFKSQPIPDNTEAIVQVVVGKTF 412

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           D+ +LNS KDV+LEV+TP C  CE TSKQ+EKLAKH+K   NL+ A+IDASANEHPKLQV
Sbjct: 413 DEEILNSKKDVVLEVFTPRCFNCEDTSKQVEKLAKHYKSSSNLIFARIDASANEHPKLQV 472

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
            ++PTLL Y A DK NPIK+S +SS K +AA I + +K KDQ  KDE
Sbjct: 473 NDFPTLLLYKANDKTNPIKLSTKSSLKELAASINKHVKVKDQVAKDE 519

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465264|ref|XP_004150348.1| PREDICTED: protein disulfide isomerase-like 1-6-like [Cucumis sativus]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 280/348 (80%), Gaps = 1/348 (0%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           + TN++NEA+EFLKK+  FV+G F+KFEG  YEEF+K A+ DNE QFV  S+ E AK+L+
Sbjct: 189 INTNSLNEAKEFLKKHHMFVVGRFEKFEGPAYEEFLKAASDDNEFQFVAASDIEAAKILF 248

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK +++FLG+VK E +RYT YE TF  +KIL FL +NKFPLVTKL ++NS  V+SSP+
Sbjct: 249 PDIKPSNNFLGLVKDEEERYTTYEGTFEREKILHFLEHNKFPLVTKLAEMNSIRVYSSPV 308

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           K QV +FA  D+L +LLEPL+++A+ FK K+MF ++DIA+E+LAKPFL+LFGLE+S  TV
Sbjct: 309 KRQVLIFADDDELHNLLEPLQNVAKKFKSKVMFISIDIANENLAKPFLSLFGLEDSDRTV 368

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SKFLLESD +PSNIEEF   L  GTL+PY +SQ IP+N  A++++VVG+TF
Sbjct: 369 VAAFDNGMSSKFLLESDPSPSNIEEFARGLYDGTLSPYFRSQSIPNNDGASIEVVVGRTF 428

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           D+LVL +  +V LEV+TPWC+TCETT+K +EKLAKHFK  DN+V A+IDASANEHPKLQV
Sbjct: 429 DELVLKNPNNVFLEVHTPWCITCETTTKNVEKLAKHFKDFDNIVFARIDASANEHPKLQV 488

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK-EKDQSPKDE 347
           ++YPTLLFYPA DK+NPIK+S++ S K++A  + + +K E+  S KDE
Sbjct: 489 DDYPTLLFYPAADKSNPIKLSSKGSLKDLAKNVSKLVKSEEHASSKDE 536

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516165|ref|XP_004165118.1| PREDICTED: protein disulfide isomerase-like 1-6-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/348 (60%), Positives = 280/348 (80%), Gaps = 1/348 (0%)

Query: 1   MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLY 60
           + TN++NEA+EFLKK+  FV+G F+KFEG  YEEF+K A+ DNE QFV  S+ E AK+L+
Sbjct: 189 INTNSLNEAKEFLKKHHMFVVGRFEKFEGPAYEEFLKAASDDNEFQFVAASDIEAAKILF 248

Query: 61  PDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI 120
           PDIK +++FLG+VK E +RYT YE TF  +KIL FL +NKFPLVTKL ++NS  V+SSP+
Sbjct: 249 PDIKPSNNFLGLVKDEEERYTTYEGTFEREKILHFLEHNKFPLVTKLAEMNSIRVYSSPV 308

Query: 121 KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
           K QV +FA  D+L +LLEPL+++A+ FK K+MF ++DIA+E+LAKPFL+LFGLE+S  TV
Sbjct: 309 KRQVLIFADDDELHNLLEPLQNVAKKFKSKVMFISIDIANENLAKPFLSLFGLEDSDRTV 368

Query: 181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF 240
           V AFDN   SKFLLESD +PSNIEEF   L  GTL+PY +SQ IP+N  A++++VVG+TF
Sbjct: 369 VAAFDNGMSSKFLLESDPSPSNIEEFARGLYDGTLSPYFRSQSIPNNDGASIEVVVGRTF 428

Query: 241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQV 300
           D+LVL +  +VL +V+TPWC+TCETT+K +EKLAKHFK  DN+V A+IDASANEHPKLQV
Sbjct: 429 DELVLKNPNNVLKQVHTPWCITCETTTKNVEKLAKHFKDFDNIVFARIDASANEHPKLQV 488

Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK-EKDQSPKDE 347
           ++YPTLLFYPA DK+NPIK+S++ S K++A  + + +K E+  S KDE
Sbjct: 489 DDYPTLLFYPAADKSNPIKLSSKGSLKDLAKNVSKLVKSEEHASSKDE 536

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2093447	534	PDIL1-6 "PDI-like 1-6" [Arabid	0.963	0.649	0.603	1.7e-114
TAIR|locus:2018134	537	PDIL1-5 "PDI-like 1-5" [Arabid	0.955	0.640	0.615	2.5e-113
TAIR|locus:2175811	597	PDIL1-4 "PDI-like 1-4" [Arabid	0.977	0.589	0.331	2.9e-55
TAIR|locus:2082712	579	PDIL1-3 "PDI-like 1-3" [Arabid	0.986	0.613	0.322	7.8e-55
ZFIN|ZDB-GENE-080610-1	509	p4hb "procollagen-proline, 2-o	0.972	0.687	0.312	2.4e-44
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.958	0.676	0.294	1.6e-40
UNIPROTKB|F1PL97	510	P4HB "Uncharacterized protein"	0.958	0.676	0.296	5.3e-40
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.958	0.676	0.291	6.8e-40
UNIPROTKB|P07237	508	P4HB "Protein disulfide-isomer	0.963	0.683	0.290	8.7e-40
UNIPROTKB|P09102	515	P4HB "Protein disulfide-isomer	0.947	0.662	0.287	3.7e-39

TAIR|locus:2093447 PDIL1-6 "PDI-like 1-6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 210/348 (60%), Positives = 282/348 (81%)

Query:     1 MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSD-YEEFVKTAAADNEIQFVETSNFEVAKVL 59
             ++ +TV+EA  FLKK+ TF+LG+F+K E S  ++EFVK A+ DNEIQFVETS+ +VAK+L
Sbjct:   186 IKLDTVDEASGFLKKHHTFILGLFEKSEDSSGHDEFVKAASLDNEIQFVETSSIDVAKLL 245

Query:    60 YPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP 119
             +P++K+ + F+G+VK+E ++YT Y+     +KI++FLN NKFPLVTKLT+ N+  V+SSP
Sbjct:   246 FPNLKTNNVFVGLVKTEAEKYTSYDGPCQAEKIVEFLNSNKFPLVTKLTESNTVRVYSSP 305

Query:   120 IKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 179
             +KLQV VF+K DD +SL +PLEDIAR FK K+M   +DI++E+LA PFLTLFG+E++K T
Sbjct:   306 VKLQVMVFSKTDDFESLAQPLEDIARKFKSKLMLIYIDISNENLAMPFLTLFGIEDAKKT 365

Query:   180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT 239
             VV AFDN   SK+LLESD +PSNIEEFC  L HGT++ Y KSQPIPDN NA+V  VVG+T
Sbjct:   366 VVAAFDNNLNSKYLLESDPSPSNIEEFCFGLAHGTVSAYYKSQPIPDNQNASVVAVVGRT 425

Query:   240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ 299
             FD++VL S ++VLLEV+TPWC+ CE  SKQ+EKL++HFKG +NLV A+IDASANEHPKL 
Sbjct:   426 FDEVVLRSSENVLLEVHTPWCINCEALSKQVEKLSQHFKGFENLVFARIDASANEHPKLT 485

Query:   300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
             V++YPT+L Y  G+K NP+K+S +SS+K++A  I ++LK KDQS KDE
Sbjct:   486 VDDYPTILLYKTGEKENPLKLSTKSSAKDMAVLINKELKWKDQSGKDE 533

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

TAIR|locus:2018134 PDIL1-5 "PDI-like 1-5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 213/346 (61%), Positives = 275/346 (79%)

Query:     4 NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDI 63
             NTV+EA  FL KY TFVLG+F+KFEGS++ EFVK A +D+EIQF+ET + +VAK+L+PD+
Sbjct:   191 NTVDEAPRFLDKYHTFVLGLFEKFEGSEHNEFVKAAKSDDEIQFIETRDSDVAKLLFPDL 250

Query:    64 KSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQ 123
             KS + F+G+VK E +RYT Y+ ++ M+KIL+FL  NKFPL TKLT+ N+  V+SSP+KLQ
Sbjct:   251 KSNNVFIGLVKPEAERYTVYDGSYKMEKILEFLGSNKFPLFTKLTETNTVWVYSSPVKLQ 310

Query:   124 VYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA 183
             V +F+KADD + L +PLEDIAR FK K+MF  VDI +E+LA PFL LFG+E    TVV A
Sbjct:   311 VMLFSKADDFQKLAQPLEDIARKFKSKLMFIYVDITNENLAMPFLILFGIEAGNKTVVAA 370

Query:   184 FDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDL 243
             FDN   SK+LLESD +P++IEEFCS L HGT++ Y +S+P+PDN NA++  VVGKTFD L
Sbjct:   371 FDNNLNSKYLLESDPSPNSIEEFCSGLAHGTVSRYYRSEPVPDNENASIVTVVGKTFDGL 430

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEE- 302
             VLNS ++VLLEV+TPWCV CE  SKQIEKLAKHFKG +NLV A+IDASANEH KLQV++ 
Sbjct:   431 VLNSRENVLLEVHTPWCVNCEALSKQIEKLAKHFKGFENLVFARIDASANEHTKLQVDDK 490

Query:   303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL-KEKDQSPKDE 347
             YP +L Y +G+K  P+K+S + S+K+IA FI E+L K K+ S KDE
Sbjct:   491 YPIILLYKSGEKEKPLKLSTKLSAKDIAVFINEELLKPKNGSAKDE 536

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

TAIR|locus:2175811 PDIL1-4 "PDI-like 1-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 120/362 (33%), Positives = 203/362 (56%)

Query:     5 TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
             T+++AE+ L      VLG      G ++++    + A++++ F +T N +VAK+ + D +
Sbjct:   216 TLDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAEDDVNFYQTVNPDVAKMFHLDPE 275

Query:    65 STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
             S    L +VK E ++ + ++  F+   ++ F++ NK  LV+  T   +  +  S IK Q+
Sbjct:   276 SKRPALVLVKKEEEKISHFDGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQL 335

Query:   125 YVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184
              +F   ++ + +L   ++ A++FKGK++F +VD+ +ED  KP    FG+  +   ++   
Sbjct:   336 LLFVTKNESEKVLTEFQEAAKSFKGKLIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIGYT 395

Query:   185 DNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 244
              N+   K+  + ++    I+ F    L+  L P+ KS PIP+  + +V+IVVG  FD++V
Sbjct:   396 GNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPIPEKNDEDVKIVVGDNFDEIV 455

Query:   245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYP 304
             L+  KDVLLEVY PWC  C+       KLAKH + +D+LVI K+D + NEHPK + E +P
Sbjct:   456 LDDSKDVLLEVYAPWCGHCQALEPMYNKLAKHLRSIDSLVITKMDGTTNEHPKAKAEGFP 515

Query:   305 TLLFYPAGDKAN-PIKVSARSSSKNIAAFIKEQLKE-----KDQSPKD-EQWKEKDQAPK 357
             T+LF+PAG+K + PI V    + + + AF K   K      K + P   E  K  +  PK
Sbjct:   516 TILFFPAGNKTSEPITVD---TDRTVVAFYKFLRKHATIPFKLEKPASTESPKTAESTPK 572

Query:   358 DE 359
              E
Sbjct:   573 VE 574

GO:0005576 "extracellular region" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 119/369 (32%), Positives = 207/369 (56%)

Query:     5 TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
             T  EAE  L      V G      GS+ EE    +  ++++ F +T++ ++AK+   + +
Sbjct:   212 TKEEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLEDDLSFYQTASPDIAKLFEIETQ 271

Query:    65 STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
                  L ++K E ++   ++  F    I +F++ NK PLV   T   ++ +  S +K Q+
Sbjct:   272 VKRPALVLLKKEEEKLARFDGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQL 331

Query:   125 YVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 184
              +FAKA++ +  L  L ++A++FKGK +F  V + +ED  +     FG+  +   V+   
Sbjct:   332 ILFAKANESEKHLPTLREVAKSFKGKFVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVYT 391

Query:   185 DNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 244
              N+ + KF+L+ +LT +NI+      L   L P+ KS P+P+N + +V+++VG  FD++V
Sbjct:   392 GNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPENNDGDVKVIVGNNFDEIV 451

Query:   245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYP 304
             L+  KDVLLE+Y PWC  C++      KL K+ KG+D+LV+AK+D ++NEHP+ + + +P
Sbjct:   452 LDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKADGFP 511

Query:   305 TLLFYPAGDKA-NPIKVSARSSSKNIAAFIKEQLK-----EKDQSP-------KDEQWKE 351
             T+LF+P G+K+ +PI V    +   +  F+K+        EK  +P       K ++  E
Sbjct:   512 TILFFPGGNKSFDPIAVDVDRTVVELYKFLKKHASIPFKLEKPATPEPVISTMKSDEKIE 571

Query:   352 KDQAPKDEL 360
              D + KDEL
Sbjct:   572 GDSS-KDEL 579

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-080610-1 p4hb "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 113/362 (31%), Positives = 193/362 (53%)

Query:     4 NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEV-AKVLYPD 62
             N V +AE  +   +  V+G FK  E  D + F+KTA A ++I F  TS+  V AK    +
Sbjct:   139 NDVMQAESIIADNEVAVIGFFKDVESEDSKAFIKTAEAVDDIPFGITSDDSVFAKF---E 195

Query:    63 IKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKL 122
             + + D  +   K +  R T ++     + +L F+  N+ PLV + T+  +  +    IK 
Sbjct:   196 V-AKDSVVLFKKFDEGRNT-FDGEVSKESLLNFIKANQLPLVIEFTEQTAPKIFGGDIKS 253

Query:   123 QVYVFAK--ADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
              + +F    A D +  ++  +  A  FKGKI+F  +D +D D  +  L  FGL++ +  V
Sbjct:   254 HILMFVPKAAKDFQDKMDQFKKAAEGFKGKILFIFID-SDVDDNQRILEFFGLKKEECPV 312

Query:   181 VTAFD-NKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVG 237
             +      + ++K+  ES ++T  NI  FC+  + GTL P+L SQ IP++ + N V+++VG
Sbjct:   313 IRLITLEEEMTKYKPESSEITAENIISFCTSFVEGTLKPHLMSQDIPEDWDKNPVKVLVG 372

Query:   238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPK 297
             K F+++  N   +V +E Y PWC  C+  +   ++L + FK   N+V+AK+D++ANE   
Sbjct:   373 KNFEEVAFNPANNVFVEFYAPWCGHCKQLAPIWDQLGEKFKDNANIVVAKMDSTANEIEA 432

Query:   298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPK 357
             ++V  +PTL F+PAGD+   I  +   +      F++   KE      DE+ +E D    
Sbjct:   433 VKVHSFPTLKFFPAGDERKVIDYNGERTLDGFTKFLESGGKEGGAPVGDEEDEEADDLDL 492

Query:   358 DE 359
             D+
Sbjct:   493 DD 494

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 105/357 (29%), Positives = 184/357 (51%)

Query:     9 AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
             AE  ++  +  V+G FK  E    ++F+  A A ++I F  TSN +V      D    D 
Sbjct:   148 AEALVESSEVAVIGFFKDMESDSAKQFLLAAEAIDDIPFGITSNSDVFSKYQLD---KDG 204

Query:    69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFA 128
              +   K +  R   +E     +K+L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct:   205 VVLFKKFDEGR-NNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query:   129 --KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                  D +  L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct:   264 PKSVSDYEGKLSNFKKAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 322

Query:   186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
              + ++K+  ESD LT   I EFC R L G + P+L SQ +PD+ +   V+++VGK F+++
Sbjct:   323 EEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEV 382

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
               +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct:   383 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 442

Query:   304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL 360
             PTL F+PA      I  +   +      F++     +D +  D+  ++ ++A + +L
Sbjct:   443 PTLKFFPASADRTVIDYNGERTLDGFKKFLESG--GQDGAGDDDDLEDLEEAEEPDL 497

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|F1PL97 P4HB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 106/357 (29%), Positives = 185/357 (51%)

Query:     9 AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
             AE  L+  +  V+G FK  E    ++F+  A A ++I F  TSN +V    Y    S D 
Sbjct:   148 AEALLESSEVTVIGFFKDVESDFAKQFLLAAEAIDDIPFGITSNSDVFSK-YQ--LSKDG 204

Query:    69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFA 128
              +   K +  R   +E     +K+L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct:   205 VVLFKKFDEGR-NNFEGEISKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query:   129 --KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                  D  S L   +  A  FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct:   264 PKSVSDYDSKLSNFKKAAERFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 322

Query:   186 NKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
              + ++K+  ES +LT   IE+FC R L G + P+L SQ +P++ +   V+++VGK F+++
Sbjct:   323 EEEMTKYKPESTELTAEKIEDFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEV 382

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
               +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct:   383 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 442

Query:   304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL 360
             PTL F+PA      I  +   +      F++     +D +  D+  ++ ++A + +L
Sbjct:   443 PTLKFFPASADRTVIDYNGERTLDGFKKFLESG--GQDGAGDDDDLEDLEEAEEPDL 497

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 104/357 (29%), Positives = 182/357 (50%)

Query:     9 AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
             AE  ++  +  V+G FK  E    ++F   A   ++I F  TSN +V      D    D 
Sbjct:   148 AEALVESSEVAVIGFFKDMESDSAKQFFLAAEVIDDIPFGITSNSDVFSKYQLD---KDG 204

Query:    69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFA 128
              +   K +  R   +E     +K+L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct:   205 VVLFKKFDEGR-NNFEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query:   129 --KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                  D +  L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct:   264 PKSVSDYEGKLSNFKKAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 322

Query:   186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
              + ++K+  ESD LT   I EFC R L G + P+L SQ +PD+ +   V+++VGK F+++
Sbjct:   323 EEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEV 382

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
               +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct:   383 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 442

Query:   304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL 360
             PTL F+PA      I  +   +      F++     +D +  D+  ++ ++A + +L
Sbjct:   443 PTLKFFPASADRTVIDYNGERTLDGFKKFLESG--GQDGAGDDDDLEDLEEAEEPDL 497

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|P07237 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 107/368 (29%), Positives = 188/368 (51%)

Query:     9 AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
             AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V      D    D 
Sbjct:   146 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD---KDG 202

Query:    69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFA 128
              +   K +  R   +E     + +L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct:   203 VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 261

Query:   129 --KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                  D    L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct:   262 PKSVSDYDGKLSNFKTAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 320

Query:   186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
              + ++K+  ES+ LT   I EFC R L G + P+L SQ +P++ +   V+++VGK F+D+
Sbjct:   321 EEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDV 380

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
               +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct:   381 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 440

Query:   304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIK----------EQLKEKDQSPKDEQWKEKD 353
             PTL F+PA      I  +   +      F++          + L++ +++ + +  ++ D
Sbjct:   441 PTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGAGDDDDLEDLEEAEEPDMEEDDD 500

Query:   354 Q-APKDEL 360
             Q A KDEL
Sbjct:   501 QKAVKDEL 508

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005576 "extracellular region" evidence=NAS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|P09102 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 101/351 (28%), Positives = 183/351 (52%)

Query:     9 AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
             AE  +   +  V+G FK       +EF+  A + ++I F  +S+ +V    Y    S D 
Sbjct:   151 AETLVDSSEVVVIGFFKDVTSDAAKEFLLAAESVDDIPFGISSSADVFSK-YQ--LSQDG 207

Query:    69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFA 128
              +   K +  R   +E     D +L F+  N+ PLV + T+  +  +    IK  + +F 
Sbjct:   208 VVLFKKFDEGR-NNFEGDLTKDNLLNFIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 266

Query:   129 --KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                  D +  L+  +  A NFKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct:   267 PKSVSDYEGKLDNFKTAAGNFKGKILFIFID-SDHSDNQRILEFFGLKKEECPAVRLITL 325

Query:   186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
              + ++K+  ESD LT   I+EFC++ L G + P+L SQ +P++ +   V+++VGK F+++
Sbjct:   326 EEEMTKYKPESDDLTADKIKEFCNKFLEGKIKPHLMSQDLPEDWDKQPVKVLVGKNFEEV 385

Query:   244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
               + +K+V +E Y PWC  C+  +   +KL + ++  +N+VIAK+D++ANE   +++  +
Sbjct:   386 AFDENKNVFVEFYAPWCGHCKQLAPIWDKLGETYRDHENIVIAKMDSTANEVEAVKIHSF 445

Query:   304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQ 354
             PTL F+PAG   N I  +   + +    F++   ++   +  D +  E D+
Sbjct:   446 PTLKFFPAGSGRNVIDYNGERTLEGFKKFLESGGQDGAAADDDLEDLETDE 496

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GQ3	PDI16_ARATH	5, ., 3, ., 4, ., 1	0.6034	0.9638	0.6498	yes	no
Q5WA72	PDI15_ORYSJ	5, ., 3, ., 4, ., 1	0.5380	0.9388	0.6341	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034375001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (537 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	8e-62
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-38
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-23
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	4e-19
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	5e-19
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	5e-19
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	1e-17
cd02982	103	cd02982, PDI_b'_family, Protein Disulfide Isomeras	2e-09
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	6e-09
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	1e-08
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	5e-08
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	8e-08
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	1e-07
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-07
cd02981	97	cd02981, PDI_b_family, Protein Disulfide Isomerase	2e-07
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	4e-07
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	6e-07
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	9e-07
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	9e-07
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	2e-05
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-05
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-05
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	4e-05
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	5e-05
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	7e-05
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	0.003
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	0.004

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  204 bits (521), Expect = 8e-62
 Identities = 99/337 (29%), Positives = 162/337 (48%), Gaps = 8/337 (2%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
           TV + E FL      V+G FK  +    + F+  A    ++ F    + +VA        
Sbjct: 118 TVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF 177

Query: 65  STDH--FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKL 122
                 F    + E       E    +  + +F+     PLV + T   +A    S   +
Sbjct: 178 PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLV 237

Query: 123 QVYVFAKADDL--KSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 180
            +Y          + L     + A+ F+GK  F    +ADE+     L  FGL+  K   
Sbjct: 238 VLYYNVDESLDPFEELRNRFLEAAKKFRGK--FVNFAVADEEDFGRELEYFGLKAEKFPA 295

Query: 181 VTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT 239
           V   D +   K+ ++ +  +  N+E F    L G L PYLKS+PIP++    V+++VGK 
Sbjct: 296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKN 355

Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASANEHPKL 298
           FD++VL+  KDVL+E Y PWC  C+  +   E+LA+ +K  + ++VIAK+DA+AN+ P  
Sbjct: 356 FDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPF 415

Query: 299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
           +VE +PT+ F PAG K+ P+      + ++ + FI +
Sbjct: 416 EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  132 bits (334), Expect = 2e-38
 Identities = 52/103 (50%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           V++VVGK FD++VL+S KDVL+E Y PWC  C+  +   E+LA+  KG DN+VIAK+DA+
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 292 ANEHPKLQVEE-YPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333
           AN+ P   V + +PT+LF+PAGDK+NPIK     + +++  FI
Sbjct: 62  ANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 6/248 (2%)

Query: 90  DKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKG 149
           +++ +F++   FPL  ++   N     SS   L V+     +D       +  +AR  + 
Sbjct: 220 EELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLRE 278

Query: 150 KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 209
           K  F  +D   E           +EE       +   + +     ES  +   + EF   
Sbjct: 279 KYAFVWLDT--EQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKD 336

Query: 210 LLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ 269
           +  G +   +KS+PIP+  +  V++VVG TF+++V  S KDVLLE+Y PWC  C+     
Sbjct: 337 VEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPV 396

Query: 270 IEKLAKHFKGLDNLVIAKIDASANEHPKLQVE--EYPTLLFYPAGDKANPIKVSARSSSK 327
             +L + +K  D++++AK++ +ANE P  +     +PT+LF  AG++  PI      + +
Sbjct: 397 YNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT-PIPYEGERTVE 455

Query: 328 NIAAFIKE 335
               F+ +
Sbjct: 456 GFKEFVNK 463

Length = 477

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 81.2 bits (201), Expect = 4e-19
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294
           +    FD++VL++ KDVL+E Y PWC  C+  + + EKLAK  K   ++V+AK+DA+A +
Sbjct: 1   LTASNFDEIVLSN-KDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 295 HP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
               +  V  +PT+ F+P G K  P+        + I  F+ E+
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKK--PVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 81.1 bits (201), Expect = 5e-19
 Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
           NV  +    FD +V +  KDVL+E Y PWC  C+  + + EKLA  F   D++VIAK+DA
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 291 SANEHP---KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333
                    K  V  +PTL F+P G    P+K       +++  F+
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGST-EPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 80.7 bits (200), Expect = 5e-19
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN- 293
           +    FD+LV +  KDVL+E Y PWC  C+  + + EKLAK  KG   +V+AK+D +AN 
Sbjct: 3   LTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN 61

Query: 294 EHPKLQ-VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333
           +      V  YPT+  +P G K  P+K     + +++  FI
Sbjct: 62  DLCSEYGVRGYPTIKLFPNGSK-EPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 6/107 (5%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           V+++  + FD+ V  S K VL++ Y PWC  C+  + + EKLA+ +K  D++  AK+DA 
Sbjct: 2   VKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDAD 59

Query: 292 AN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
            N +   +  V  +PT+ F+  G K +   V AR+    + AFIK+ 
Sbjct: 60  ENPDLASEYGVRGFPTIKFFKNGKKVSDY-VGARTKDD-LVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 121 KLQVYVFAKADD--LKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN 178
           K  + +F   DD   + L E  +++A+ FKGK++F    + D D     L  FGL+E   
Sbjct: 13  KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFV---VVDADDFGRHLEYFGLKEEDL 69

Query: 179 TVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLL 211
            V+   +     K+L+  + LT  ++EEF    L
Sbjct: 70  PVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive domains are implicated in substrate recognition with the b' domain serving as the primary substrate binding site. Only the b' domain is necessary for the binding of small peptide substrates. In addition to the b' domain, other domains are required for the binding of larger polypeptide substrates. The b' domain is also implicated in chaperone activity. Length = 103

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA-SANEHPK 297
            FD  VLNS    L+E Y PWC  C+  + + +K AK  KG     I K+ A  A+ H  
Sbjct: 9   NFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-----IVKVGAVDADVHQS 63

Query: 298 L----QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAF 332
           L     V  +PT+  + AG K +P       ++K I + 
Sbjct: 64  LAQQYGVRGFPTIKVFGAG-KNSPQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            V  +  K FD +V N++   L+E Y PWC  C+    +  K AK   GL  +     D 
Sbjct: 1   PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60

Query: 291 SANEH--PKLQVEEYPTL-LFYPAGDKANP 317
             N+    K  V+ +PTL +F P    +  
Sbjct: 61  DKNKPLCGKYGVQGFPTLKVFRPPKKASKH 90

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
           + F +LVLN  +  L++ Y PWC  C+    ++ K A+  KG     +  +D    E   
Sbjct: 9   EDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVK--VGSVDCQKYESLC 66

Query: 296 PKLQVEEYPTLLFYPAG 312
            +  +  YPT+  YP  
Sbjct: 67  QQANIRAYPTIRLYPGN 83

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP----KLQVE 301
             ++  L+ +Y PWC  C+      E+LA+   G  N+ +AK +A   +      +LQ++
Sbjct: 19  RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLK 77

Query: 302 EYPTLLFYPAGDKANPIK 319
            +PT+LF+P   +  PIK
Sbjct: 78  SFPTILFFPKNSR-QPIK 94

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP- 296
             FD+ + +S K VL++ + PWC  C+  +  +E+LAK ++G   +   K++   N    
Sbjct: 4   ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIA 61

Query: 297 -KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
            K  +   PTLL +  G      K   RS      A +K+ + +
Sbjct: 62  AKYGIRSIPTLLLFKNG------KEVDRSVGALPKAALKQLINK 99

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 10/76 (13%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP- 296
           + F++L+  S K V+++ + PWC  C+  +  +E+LA+ +     +   K+D   +E+P 
Sbjct: 1   EEFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEEY---PKVKFVKVD--VDENPE 54

Query: 297 ---KLQVEEYPTLLFY 309
              +  V   PT LF+
Sbjct: 55  LAEEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 4  NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAKVLYPD 62
           +  E E+FL K    V+G FK  E  +Y+ F K A +  ++  F  TS+ EVAK L   
Sbjct: 5  TSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKL--- 61

Query: 63 IKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFL 96
           K     + + K   +    Y+  F  + +++F+
Sbjct: 62 -KVKPGSVVLFKPFEEEPVEYDGEFTEESLVEFI 94

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Length = 97

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASANEH- 295
             FDD +  SH+ VL+E Y PWC  C++ + + EK A   K     + +AK+DA+  +  
Sbjct: 9   DNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDL 67

Query: 296 -PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
             K  V  YPTL  +  G+  +    +    +  I  ++K+Q
Sbjct: 68  AQKYGVSGYPTLKIFRNGED-SVSDYNGPRDADGIVKYMKKQ 108

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 7/186 (3%)

Query: 24  FKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTG 82
           F+  +   YE F K A     +++F  T + EVAK       +   F    + +      
Sbjct: 1   FEDKDDPLYEIFEKAAKELRGDVRFGVTFDKEVAKKYGIKEPTILLFRKFDEKQVTYPGE 60

Query: 83  YEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLED 142
            + TF  D + +F+  N  PLV + T  N+  +  S   L +++   +++ + L   +E+
Sbjct: 61  DKTTF--DDLKKFIQKNSLPLVGEFTPENAEELFESGKPLLLFIKKDSEETEKLKNRVEE 118

Query: 143 IARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA-ISKFLLESDLTPS 201
           +A+ FKGKI F      D       L   GL  +   V+   D+ +   K+  E + +P 
Sbjct: 119 VAKKFKGKINFA---TVDGKSFGRVLEYLGLSSADLPVIVIVDSASHKKKYFPEDEFSPE 175

Query: 202 NIEEFC 207
           +++EF 
Sbjct: 176 SLKEFL 181

Length = 183

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-IAKID 289
            V ++   +F+  +L S    L+E Y  WC  C   +   +KLA+  +    +V +A +D
Sbjct: 2   PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61

Query: 290 ASANEHPKL----QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
            +  E+  L     V  YPTL ++P   K     +      +++   ++E L
Sbjct: 62  CADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDV-NELREAL 112

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASA--- 292
              FD  +  +  +  ++ + PWC  C+  +   E+LA K      ++ IAK+D +    
Sbjct: 7   EDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE 64

Query: 293 --NEHPKLQVEEYPTLLFYPAGDKAN 316
             +E    QV  YPTLL +  G+K +
Sbjct: 65  LCSEF---QVRGYPTLLLFKDGEKVD 87

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL 298
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   +    ID +    PK 
Sbjct: 12  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY 71

Query: 299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
            +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 72  GIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 102

Length = 109

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)

Query: 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFY 309
            ++ Y PWC  C   +   E+LAK  KG  N  +A +DA+   +   +  ++ YPTLL +
Sbjct: 56  FVKFYAPWCSHCRKMAPAWERLAKALKGQVN--VADLDATRALNLAKRFAIKGYPTLLLF 113

Query: 310 PAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSP 344
             G K    +   RS+ K +AAF     K+   +P
Sbjct: 114 DKG-KMYQYEGGDRSTEK-LAAFALGDFKKALGAP 146

Length = 224

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASANEH-- 295
           TFD   +  ++ VL++ Y PWC  C+  + + +K AK  K     +V+A +DA+      
Sbjct: 41  TFDKF-ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELA 99

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
            +  V  YPT+ F+   +K NP+  S   ++  I ++IK+
Sbjct: 100 QEFGVRGYPTIKFF---NKGNPVNYSGGRTADGIVSWIKK 136

Length = 477

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294
           +  + F    L   K VL+  Y PWC  C+    +  K A   K     V+A +D +  E
Sbjct: 5   LTDEDFRKF-LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE 63

Query: 295 HPKLQ----VEEYPTLLFYPAG 312
           H  L+    V+ +PT  ++  G
Sbjct: 64  HDALKEEYNVKGFPTFKYFENG 85

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 243 LVLNSHKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP----K 297
           L L + K+  L V Y PWC  C+      E+LA+   G   + +AK  A  ++      +
Sbjct: 359 LKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQE 417

Query: 298 LQVEEYPTLLFYPAGDKANPIK 319
           LQ+  +PT+L +P      PIK
Sbjct: 418 LQLGSFPTILLFPKNSS-RPIK 438

Length = 457

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 16/84 (19%)

Query: 246 NSHKDVLLEVYTPWCVTCETTSKQIEKL-----AKHFKGLDNLVIAKIDASAN--EHPKL 298
              K V+L+ Y  WCVTC    K+ EK            L ++V+ + D +AN      L
Sbjct: 472 AKAKPVMLDFYADWCVTC----KENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITAL 526

Query: 299 ----QVEEYPTLLFYPAGDKANPI 318
                V   PT LF+        I
Sbjct: 527 LKRLGVFGVPTYLFFGPQGSEPEI 550

Length = 569

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-----KLQVEEYPTL 306
           L+  Y PWC  C+     + +LA   KG   +    +D   +        +  V   PTL
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKG---VKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 307 LFYPAGDK 314
           + +  G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 240 FDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL 298
           F  ++  S    V+++ + P     +     +E+LA+ ++G    V+AK++  A   P++
Sbjct: 3   FQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQ--PQI 58

Query: 299 ----QVEEYPTLLFYPAG 312
                V+  PT+  + AG
Sbjct: 59  AQQFGVQALPTVYLFAAG 76

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.93
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.93
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.86
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.86
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.83
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.82
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.82
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.81
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.8
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.8
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.8
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.79
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.79
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.79
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.78
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.76
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.75
PTZ00102	477	disulphide isomerase; Provisional	99.75
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.75
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.74
PRK09381	109	trxA thioredoxin; Provisional	99.73
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.73
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.72
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.72
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.72
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.72
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.71
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.71
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.7
PHA02278	103	thioredoxin-like protein	99.68
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.67
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.67
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.67
PRK10996	139	thioredoxin 2; Provisional	99.66
PLN02309	457	5'-adenylylsulfate reductase	99.66
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.66
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.63
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.63
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.63
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.62
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.62
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.61
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.61
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	99.6
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	99.6
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.6
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.6
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.59
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.59
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	99.59
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.58
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.55
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.53
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.53
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.53
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.53
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.52
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.52
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.51
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.5
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.5
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.5
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	99.49
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.49
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.49
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.48
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.43
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.43
PTZ00051	98	thioredoxin; Provisional	99.43
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.42
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.42
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.41
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.4
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.39
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.36
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.35
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.35
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.34
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.33
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.32
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.32
PTZ00062	204	glutaredoxin; Provisional	99.28
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.28
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.27
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.26
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.25
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.25
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.25
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.24
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.24
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.24
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.24
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.22
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.21
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.19
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.19
PTZ00062	204	glutaredoxin; Provisional	99.18
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.18
PRK09381	109	trxA thioredoxin; Provisional	99.17
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.17
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.16
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.13
PRK10996	139	thioredoxin 2; Provisional	99.11
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.11
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.09
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.08
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.08
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.07
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.02
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.02
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.0
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.99
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.99
PLN02309	457	5'-adenylylsulfate reductase	98.95
PHA02125	75	thioredoxin-like protein	98.94
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.93
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.93
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.93
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.92
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.9
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.9
PHA02278	103	thioredoxin-like protein	98.89
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.89
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.89
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.89
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.88
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.88
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.85
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.84
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.82
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.82
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.81
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.8
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.8
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.78
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.77
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.76
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.76
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.73
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.73
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.71
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.7
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.69
PTZ00051	98	thioredoxin; Provisional	98.66
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.66
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.66
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.65
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.64
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.64
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.64
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.61
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.61
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.59
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.58
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.56
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.53
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.53
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.52
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.49
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	98.47
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.46
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.45
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.44
smart00594	122	UAS UAS domain.	98.43
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.41
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.38
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.38
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.36
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.32
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.26
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.25
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.24
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.22
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.22
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.18
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.15
PTZ00056	199	glutathione peroxidase; Provisional	98.14
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.09
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.09
PLN02412	167	probable glutathione peroxidase	98.08
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.07
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.06
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.05
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.03
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.01
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.0
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.99
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.98
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.98
PF13728	215	TraF: F plasmid transfer operon protein	97.93
PTZ00256	183	glutathione peroxidase; Provisional	97.88
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.88
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.86
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.8
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.79
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.79
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.76
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.7
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.7
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.69
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.68
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.68
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.65
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.62
PRK11200	85	grxA glutaredoxin 1; Provisional	97.61
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.59
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.56
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.56
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	97.54
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.54
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	97.53
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.52
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.51
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.49
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.47
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.45
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.45
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	97.41
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.4
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.4
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.39
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.33
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.32
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.3
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.24
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.18
smart00594	122	UAS UAS domain.	97.14
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.13
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.13
KOG1672	211	consensus ATP binding protein [Posttranslational m	97.12
PHA02125	75	thioredoxin-like protein	97.1
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.1
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.08
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.05
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.02
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.02
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.01
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	97.01
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.99
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	96.98
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.95
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	96.94
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.91
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.9
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.84
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	96.77
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.72
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.71
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.71
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	96.65
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	96.63
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.62
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	96.6
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	96.59
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	96.53
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.48
PRK10329	81	glutaredoxin-like protein; Provisional	96.48
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.42
PRK13728	181	conjugal transfer protein TrbB; Provisional	96.36
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.28
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.26
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	96.26
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.24
PF13728	215	TraF: F plasmid transfer operon protein	96.21
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.21
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	96.21
KOG1672	211	consensus ATP binding protein [Posttranslational m	96.2
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.18
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.12
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	96.1
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	96.08
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.03
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.0
PHA03050	108	glutaredoxin; Provisional	96.0
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.97
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	95.95
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.94
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	95.89
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	95.88
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	95.86
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.86
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	95.82
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.8
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.76
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.75
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	95.74
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	95.73
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	95.63
PTZ00056	199	glutathione peroxidase; Provisional	95.52
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.45
PRK13190	202	putative peroxiredoxin; Provisional	95.44
PRK10824	115	glutaredoxin-4; Provisional	95.39
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	95.38
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	95.33
KOG3171	273	consensus Conserved phosducin-like protein [Signal	95.18
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	95.13
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	95.01
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	94.91
PRK10638	83	glutaredoxin 3; Provisional	94.86
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.81
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	94.74
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.43
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	94.2
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	94.17
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	94.04
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	93.9
PRK15000	200	peroxidase; Provisional	93.88
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.8
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	93.79
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	93.68
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	93.6
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	93.51
PLN02412	167	probable glutathione peroxidase	93.37
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	93.33
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	93.32
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	93.05
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	93.03
COG2143	182	Thioredoxin-related protein [Posttranslational mod	92.96
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	92.85
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	92.67
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	92.59
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	92.56
PTZ00137	261	2-Cys peroxiredoxin; Provisional	92.48
PTZ00253	199	tryparedoxin peroxidase; Provisional	92.23
PRK13599	215	putative peroxiredoxin; Provisional	92.14
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	92.13
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	91.86
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	91.81
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	91.71
PRK13191	215	putative peroxiredoxin; Provisional	91.67
KOG3170	240	consensus Conserved phosducin-like protein [Signal	91.29
PRK13189	222	peroxiredoxin; Provisional	90.77
KOG3171	273	consensus Conserved phosducin-like protein [Signal	89.59
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	89.25
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	88.98
KOG2640	319	consensus Thioredoxin [Function unknown]	88.94
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	88.65
PTZ00256	183	glutathione peroxidase; Provisional	88.49
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	88.28
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	88.23
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	88.15
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	88.12
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	87.81
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	87.55
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	86.48
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	86.07
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	85.72
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	85.61
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	85.38
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	85.2
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	83.08
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	82.42
KOG3425	128	consensus Uncharacterized conserved protein [Funct	81.72
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	81.33
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	81.21
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	81.1
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	80.97
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	80.47
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	80.17
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	80.14

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-60  Score=429.78  Aligned_cols=351  Identities=38%  Similarity=0.632  Sum_probs=315.7

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      .+.++++++.|+.+++++|||||.+..+.. ..|..+| ++++++.|+++.++++++++++..+. .+.+++++++++..
T Consensus       138 ~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~  215 (493)
T KOG0190|consen  138 TLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELL  215 (493)
T ss_pred             ecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhccccceeeccCcHhHHhhccCCCCC-cceEEeccccccch
Confidence            588999999999999999999999988877 7777777 99999999999999999999986332 45599999999988


Q ss_pred             cccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeC
Q 018164           81 TGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDI  158 (360)
Q Consensus        81 ~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~  158 (360)
                      ..|+|+++.+.|.+||+.+++|+|.++|..+...+++...+..++||...  ...+.+.+.+.++|++|+++++|+.+|.
T Consensus       216 ~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~  295 (493)
T KOG0190|consen  216 VKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDP  295 (493)
T ss_pred             hhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEECh
Confidence            89999999999999999999999999999999999988777777777765  5889999999999999999999999988


Q ss_pred             CCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcCccCCccccCCCCCCCC-CceEEEc
Q 018164          159 ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN-ANVQIVV  236 (360)
Q Consensus       159 ~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~-~~v~~l~  236 (360)
                      ..+.   +.++.||+....+++.++.....+.+|.++.. .+.++|..|+.+++.|+++|+++|+|+|++++ ++|+.++
T Consensus       296 e~~~---~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvV  372 (493)
T KOG0190|consen  296 ESFA---RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVV  372 (493)
T ss_pred             HHhh---HHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEe
Confidence            8775   68999999955465556777777889998665 88899999999999999999999999999997 8899999


Q ss_pred             CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccC
Q 018164          237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~  316 (360)
                      ++||++++.+.+++|||.||||||+||+++.|+|++||+.+++.+++.+++||++.|+++...+++||||++|++|.+.+
T Consensus       373 gknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~~  452 (493)
T KOG0190|consen  373 GKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKSN  452 (493)
T ss_pred             ecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCCC
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999988


Q ss_pred             ceEecCCCCHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCCCCC
Q 018164          317 PIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL  360 (360)
Q Consensus       317 ~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~e~~~~~~~~~~de~  360 (360)
                      |+.|+|.|+.+++..||.++.+..+...+++...+   ..||||
T Consensus       453 pv~y~g~R~le~~~~fi~~~a~~~~~~~~ee~~~~---~~~dEL  493 (493)
T KOG0190|consen  453 PVIYNGDRTLEDLKKFIKKSATESATPKKEEKKDE---SVKDEL  493 (493)
T ss_pred             CcccCCCcchHHHHhhhccCCCccccccchhcccc---cccccC
Confidence            99999999999999999999885444333333333   889997

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=1.3e-43  Score=336.13  Aligned_cols=331  Identities=29%  Similarity=0.520  Sum_probs=285.8

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCce-EEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQ-FVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR   79 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~-F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~   79 (360)
                      ++++.++++.|+..+++.+|+|+.+.++...+.|.++| ...+.+. |+.+.+..+++.++..    .+.+.+|++.+..
T Consensus       115 ~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  190 (462)
T TIGR01130       115 EIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAF----PDSVVLFKPKDED  190 (462)
T ss_pred             eecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCC----CCcEEEecccccc
Confidence            57889999999999999999999888889999999999 6666666 6667788888888864    5778888876544


Q ss_pred             c--cccCCCC--ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcC-ce
Q 018164           80 Y--TGYEETF--IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKG-KI  151 (360)
Q Consensus        80 ~--~~y~g~~--~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~-~i  151 (360)
                      .  ..|.|+.  +.++|..||..+..|++.+++..++..++..+ +.+++|+...   ..++++...|+++|+++++ .+
T Consensus       191 ~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i  269 (462)
T TIGR01130       191 EKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFV  269 (462)
T ss_pred             cccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeE
Confidence            4  3677765  56899999999999999999999999888776 6555555433   3468999999999999997 89


Q ss_pred             EEEEEeCCCcccchhHHhhcCCCCC-CCceEEEEeCCCcccccCCC-CCCHHHHHHHHHHHhcCccCCccccCCCCCCCC
Q 018164          152 MFTAVDIADEDLAKPFLTLFGLEES-KNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN  229 (360)
Q Consensus       152 ~f~~vd~~~~~~~~~l~~~~gi~~~-~p~~~~~~~~~~~~~y~~~~-~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~  229 (360)
                      .|+++|+..+.   .+++.+|+... .|.+ ++.+..+..+|.+.+ .++.++|.+|++++++|+++|.++|+++|+...
T Consensus       270 ~f~~~d~~~~~---~~~~~~~~~~~~~P~~-vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~  345 (462)
T TIGR01130       270 NFAVADEEDFG---RELEYFGLKAEKFPAV-AIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDE  345 (462)
T ss_pred             EEEEecHHHhH---HHHHHcCCCccCCceE-EEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCC
Confidence            99999999775   89999999943 2666 566655446788866 799999999999999999999999999999888


Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCCCCCCCCCCCcEEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASANEHPKLQVEEYPTLLF  308 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~~~~~i~~~Pti~~  308 (360)
                      +.|..+++++|++.+.+++++++|.||++||++|+.+.|.++++++.+++ .+++.|+++|++.|+++.+++.++||+++
T Consensus       346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~  425 (462)
T TIGR01130       346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKF  425 (462)
T ss_pred             CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEE
Confidence            89999999999999988899999999999999999999999999999987 33799999999999877799999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      |++|.+..+..|.|.++.+.|.+||.++++.+-
T Consensus       426 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  458 (462)
T TIGR01130       426 VPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL  458 (462)
T ss_pred             EeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence            999988668899999999999999999987654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=5.6e-42  Score=325.66  Aligned_cols=319  Identities=22%  Similarity=0.414  Sum_probs=271.9

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      +|++.++++.+.+...++++|++.+.+++..+.|.++| ..++++.|+.+.+.            +.+.+.+||+.+...
T Consensus       144 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~~~~~  211 (477)
T PTZ00102        144 EVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKDEEGV  211 (477)
T ss_pred             eecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecCCCCc
Confidence            47788888888888889999999988889999999999 77788999887543            246789999765444


Q ss_pred             cccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Q 018164           81 TGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIAD  160 (360)
Q Consensus        81 ~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~  160 (360)
                      ..|.| .+.++|..||..+..|++..++.+++..++..+.+. ++|+...++.+++.+.|+++|+++++++.|+++|+..
T Consensus       212 ~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~  289 (477)
T PTZ00102        212 ELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ  289 (477)
T ss_pred             ccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh
Confidence            44444 588999999999999999999999999988877654 3333333667789999999999999999999999998


Q ss_pred             cccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEc
Q 018164          161 EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV  236 (360)
Q Consensus       161 ~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~  236 (360)
                      +.  ..+++.+|+..+ |.+ ++....  .+|.+.+.    .+.++|.+|++++++|++.++++|+++|+...+.|+.++
T Consensus       290 ~~--~~~~~~~gi~~~-P~~-~i~~~~--~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~  363 (477)
T PTZ00102        290 FG--SHAKEHLLIEEF-PGL-AYQSPA--GRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV  363 (477)
T ss_pred             cc--hhHHHhcCcccC-ceE-EEEcCC--cccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence            75  237899999987 776 455432  35655443    789999999999999999999999999998888999999


Q ss_pred             CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CCCCCCCCcEEEEEeCCCc
Q 018164          237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pti~~~~~g~~  314 (360)
                      +++|++.+.+++++++|.||||||++|+.+.|.|+++|+.+++.+.+.++.+|++.++.  ..+++.++||+++|++|++
T Consensus       364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~  443 (477)
T PTZ00102        364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER  443 (477)
T ss_pred             ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence            99999998888999999999999999999999999999999865579999999999954  3689999999999999977


Q ss_pred             cCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      . +++|.|.++.+.|.+||++++..+.
T Consensus       444 ~-~~~~~G~~~~~~l~~~i~~~~~~~~  469 (477)
T PTZ00102        444 T-PIPYEGERTVEGFKEFVNKHATNPF  469 (477)
T ss_pred             c-eeEecCcCCHHHHHHHHHHcCCCCc
Confidence            5 7789999999999999999997643

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-24  Score=198.98  Aligned_cols=218  Identities=25%  Similarity=0.401  Sum_probs=183.6

Q ss_pred             ecCccccc-ccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          106 KLTDINSA-SVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       106 ~l~~~~~~-~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      .++..++. .......++++.||++| ++|+++.+.|++++..+++++.++.|||+.+.   .+|+.++|.++ |++. +
T Consensus        33 ~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~---~~~~~y~i~gf-Ptl~-~  107 (383)
T KOG0191|consen   33 ELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK---DLCEKYGIQGF-PTLK-V  107 (383)
T ss_pred             hhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH---HHHHhcCCccC-cEEE-E
Confidence            33333443 35566778999999999 99999999999999999999999999999886   99999999999 9995 5


Q ss_pred             EeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCC-ceEEEcCccccccccccCccEEEEEeCCCChh
Q 018164          184 FDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNA-NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT  262 (360)
Q Consensus       184 ~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~-~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~  262 (360)
                      +..+ ...+.+.|..+.+.+..|+...+.......          .. .|..++..+|...+.+.+.+++|.||+|||+|
T Consensus       108 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~  176 (383)
T KOG0191|consen  108 FRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGH  176 (383)
T ss_pred             EcCC-CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHH
Confidence            5544 456667888999999999998775433221          12 48889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          263 CETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       263 c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      |+.+.|.|++++..+.....+.++.+||+.+ .+ ..+++.+|||+.+|+.|.. ...-|.|.|+.+.+.+|+.+..+..
T Consensus       177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  177 CKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             hhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhhcCCC
Confidence            9999999999999997545899999999865 34 3679999999999999988 3456789999999999999988764

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.93  E-value=4.7e-24  Score=176.81  Aligned_cols=178  Identities=30%  Similarity=0.450  Sum_probs=151.9

Q ss_pred             ecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCccccCCC-CChHHHHHHHhhccC
Q 018164           24 FKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEET-FIMDKILQFLNYNKF  101 (360)
Q Consensus        24 f~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~  101 (360)
                      |++.++.+.+.|.++| .+.+++.|+++.+++++++++++    .|+|++||++++.+..|+|+ ++.++|.+||..++.
T Consensus         1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~   76 (184)
T PF13848_consen    1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIK----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF   76 (184)
T ss_dssp             ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCS----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred             CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCC----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence            6777889999999999 77889999999999999999997    49999999988888999998 899999999999999


Q ss_pred             CceeecCcccccccccCCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC-C
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK-N  178 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~-p  178 (360)
                      |+|.++|.+|+..+++.+.+.+++++.. . ...+.+...++++|+++++++.|+++|+...+   ++++.+|+++.. |
T Consensus        77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~---~~~~~~~i~~~~~P  153 (184)
T PF13848_consen   77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP---RLLKYFGIDEDDLP  153 (184)
T ss_dssp             TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH---HHHHHTTTTTSSSS
T ss_pred             ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH---HHHHHcCCCCccCC
Confidence            9999999999999999988755555554 3 67888999999999999999999999999665   899999999543 5


Q ss_pred             ceEEEEeCCCcc-cccCCCCCCHHHHHHHHHH
Q 018164          179 TVVTAFDNKAIS-KFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       179 ~~~~~~~~~~~~-~y~~~~~~~~~~i~~fi~~  209 (360)
                      .+ ++.+..... .|.+.+.++.++|.+|+++
T Consensus       154 ~~-vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  154 AL-VIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             EE-EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             EE-EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            55 566644433 3445788999999999975

...

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.7e-20  Score=172.38  Aligned_cols=292  Identities=18%  Similarity=0.229  Sum_probs=217.5

Q ss_pred             HHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCCCceEEEe---ccHHHHHHcCCCCCCCCCEEEEEecCCCCcccc
Q 018164           11 EFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADNEIQFVET---SNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGY   83 (360)
Q Consensus        11 ~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y   83 (360)
                      .++..+..++|-|+.++|+   +....|.++| .+++.+.++.+   .+.++|.++++.   ++|++.+|+++ .....|
T Consensus        42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~---gfPtl~~f~~~-~~~~~~  117 (383)
T KOG0191|consen   42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQ---GFPTLKVFRPG-KKPIDY  117 (383)
T ss_pred             HhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCc---cCcEEEEEcCC-Cceeec
Confidence            4455678889999998886   6788999998 67777888774   467899999998   89999999987 667899


Q ss_pred             CCCCChHHHHHHHhhccCC-------c-eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhc--Cce
Q 018164           84 EETFIMDKILQFLNYNKFP-------L-VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKI  151 (360)
Q Consensus        84 ~g~~~~~~l~~fi~~~~~p-------~-v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i  151 (360)
                      +|..+.+.+..|+.....+       . +..++..++.... .....+++.||+|| .+|+.+.+.|.++|..+.  +.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v  197 (383)
T KOG0191|consen  118 SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENV  197 (383)
T ss_pred             cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcce
Confidence            9999999999999875543       3 5566666666533 34567899999999 999999999999999996  579


Q ss_pred             EEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCc-cccCCCCCCCCC
Q 018164          152 MFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPY-LKSQPIPDNTNA  230 (360)
Q Consensus       152 ~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~-~~se~~p~~~~~  230 (360)
                      .++.+||+...   .++..+++..+ |++. ++..+....+.+.+.++.+.|..|+++.......+. ..+-.-+..  .
T Consensus       198 ~~~~~d~~~~~---~~~~~~~v~~~-Pt~~-~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~--~  270 (383)
T KOG0191|consen  198 ELGKIDATVHK---SLASRLEVRGY-PTLK-LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDT--F  270 (383)
T ss_pred             EEEeeccchHH---HHhhhhcccCC-ceEE-EecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccc--c
Confidence            99999998553   88999999999 9994 555443323445788999999999999876432111 111111100  0


Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHH-hcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      ....++.++|... .......++.|+++||++|..+.|.+...+.. ......+.+.+++|... .++ ...++.+|++.
T Consensus       271 ~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  349 (383)
T KOG0191|consen  271 SPTFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIK  349 (383)
T ss_pred             ccchhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeE
Confidence            0011111222221 23455789999999999999999999999988 22333789999999887 433 45788999999


Q ss_pred             EEeCCCc
Q 018164          308 FYPAGDK  314 (360)
Q Consensus       308 ~~~~g~~  314 (360)
                      ++..|..
T Consensus       350 ~~~~~~~  356 (383)
T KOG0191|consen  350 LYNYGKN  356 (383)
T ss_pred             eeccccc
Confidence            9987765

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.86  E-value=4e-21  Score=143.68  Aligned_cols=101  Identities=14%  Similarity=0.266  Sum_probs=90.5

Q ss_pred             CCceEEEcCcccccc--ccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC--CCCCCCC
Q 018164          229 NANVQIVVGKTFDDL--VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP--KLQVEEY  303 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~--~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~--~~~i~~~  303 (360)
                      .+.|..++..+|++.  +.++++.++|.||||||++|+.+.|.|+++|+.+++  .+.|++|||+.+ ++.  +++|.++
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~   85 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF   85 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence            456899999999987  357889999999999999999999999999999986  699999999988 453  6899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ||+++|++|..  +.+|.|.++.+.|..|+
T Consensus        86 PTl~lf~~g~~--~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          86 PVIHLYYRSRG--PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             CEEEEEECCcc--ceEEeCCCCHHHHHhhC
Confidence            99999998876  67999999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.83  E-value=2.3e-19  Score=151.56  Aligned_cols=185  Identities=14%  Similarity=0.127  Sum_probs=135.4

Q ss_pred             eEEEEEE---ec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC
Q 018164          122 LQVYVFA---KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES  196 (360)
Q Consensus       122 ~~v~f~~---~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~  196 (360)
                      .+++|++   +| ++|+.+.+.++++++++.+ ++.++.+|.+...   .+++.|||.+. |+++ ++.++......+.|
T Consensus        22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~---~l~~~~~V~~~-Pt~~-~f~~g~~~~~~~~G   96 (215)
T TIGR02187        22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK---EEAEKYGVERV-PTTI-ILEEGKDGGIRYTG   96 (215)
T ss_pred             EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH---HHHHHcCCCcc-CEEE-EEeCCeeeEEEEee
Confidence            3566778   88 9999999999999999953 2445556655654   99999999999 9995 54444332234578


Q ss_pred             CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHH
Q 018164          197 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAK  275 (360)
Q Consensus       197 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~  275 (360)
                      ..+.+.+..|++.+++-  ...             ...++..+.+.+ ...+++ .++.||++||++|+.+.+.+++++.
T Consensus        97 ~~~~~~l~~~i~~~~~~--~~~-------------~~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~  160 (215)
T TIGR02187        97 IPAGYEFAALIEDIVRV--SQG-------------EPGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFAL  160 (215)
T ss_pred             cCCHHHHHHHHHHHHHh--cCC-------------CCCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence            88889999999988631  100             012222333332 233445 4555999999999999999999988


Q ss_pred             HhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          276 HFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       276 ~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      .. +  ++.+..+|.+.+ ++ .+++|.++||++++.+|.     .+.|..+.+.|.+||.+
T Consensus       161 ~~-~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-----~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       161 AN-D--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-----EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             hc-C--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-----EEECCCCHHHHHHHHHh
Confidence            74 3  789999999888 44 478999999999986552     38899999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.7e-20  Score=141.38  Aligned_cols=104  Identities=25%  Similarity=0.531  Sum_probs=95.6

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      .+..++..+|++.|.+++.||+|.|||+||++|+.+.|.+++++..+.+  .++++++|.+.+ ++. +|+|.++||+++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence            4566778899999999999999999999999999999999999999988  899999999998 775 799999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      |++|.+..  ++.|..+.+.|.+||++.+.
T Consensus       122 fknGe~~d--~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNGEKVD--RFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECCEEee--eecccCCHHHHHHHHHHHhc
Confidence            99998864  88999999999999998764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.82  E-value=8.8e-20  Score=136.38  Aligned_cols=103  Identities=50%  Similarity=0.941  Sum_probs=92.6

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-CCCCCCCcEEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-~~~i~~~Pti~~~  309 (360)
                      +|..|++++|++.+.+.+++++|+||++||++|+.+.|.|+++++.+++..++.++.+|++.+++. .+++.++|++++|
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF   80 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence            478999999999987778999999999999999999999999999998755799999999998665 5688999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHH
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ++|.+..+.+|.|.++.+.|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            999844577899999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.81  E-value=1.1e-19  Score=135.81  Aligned_cols=100  Identities=25%  Similarity=0.541  Sum_probs=88.9

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      .|..++.++|++.+.+++++++|.||++||++|+.+.|.|+++++.+.+  .+.|+++||+.+ ++. +++|.++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            4678889999999888888999999999999999999999999999976  799999999998 554 689999999999


Q ss_pred             EeCCCccCceEecCCCC-HHHHHHHH
Q 018164          309 YPAGDKANPIKVSARSS-SKNIAAFI  333 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~-~~~l~~~i  333 (360)
                      |++|+.. ..+|.|..+ .++|.+||
T Consensus        80 ~~~g~~~-~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASK-YHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCC-ceEccCCCCCHHHHHhhC
Confidence            9998443 678999887 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=1.8e-19  Score=133.72  Aligned_cols=97  Identities=24%  Similarity=0.468  Sum_probs=86.7

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      .|..++.++|++.+ ..+++++|+||++||++|+.+.|.|+++|+.+++  .+.|+++||+.+ .+ .+++|.++||+++
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   78 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV   78 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence            36788999999988 5568999999999999999999999999999987  699999999998 54 4789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHH
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAF  332 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~  332 (360)
                      |++|..  ..+|.|.++.+.|.+|
T Consensus        79 ~~~g~~--~~~~~G~~~~~~l~~f  100 (101)
T cd03003          79 FPSGMN--PEKYYGDRSKESLVKF  100 (101)
T ss_pred             EcCCCC--cccCCCCCCHHHHHhh
Confidence            999876  4589999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.80  E-value=1e-17  Score=142.93  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=150.1

Q ss_pred             cCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            3 TNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         3 i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      |++..+++.|-+ ...+-|||||++.+++.+++|.++| ..++.++|+.|.++.+|+++++.    ...|-+|+|+.+.+
T Consensus       151 In~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~p  226 (383)
T PF01216_consen  151 INNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEP  226 (383)
T ss_dssp             E-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSE
T ss_pred             hcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCC
Confidence            788899999988 4589999999999999999999999 77799999999999999999984    78899999998888


Q ss_pred             cccCC-CCChHHHHHHHhhccCCceeecCcccccccccCC-CceEEEEEEec--cchHHHHHHHHHHHHhhcC--ceEEE
Q 018164           81 TGYEE-TFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP-IKLQVYVFAKA--DDLKSLLEPLEDIARNFKG--KIMFT  154 (360)
Q Consensus        81 ~~y~g-~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~-~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~--~i~f~  154 (360)
                      +...| +.+.++|..||..|..|..+.++++++-...... ....+..|+..  ++..++...++++|+....  .+.++
T Consensus       227 i~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~Lsiv  306 (383)
T PF01216_consen  227 ITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIV  306 (383)
T ss_dssp             EEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EE
T ss_pred             ccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEE
Confidence            88875 4688999999999999999999999965544332 23456666666  6778899999999998874  59999


Q ss_pred             EEeCCCcccchhH-HhhcCCCCCCCceEEEEeCCCcccccC--CC---CCCHHHHHHHHHHHhcCccCC
Q 018164          155 AVDIADEDLAKPF-LTLFGLEESKNTVVTAFDNKAISKFLL--ES---DLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       155 ~vd~~~~~~~~~l-~~~~gi~~~~p~~~~~~~~~~~~~y~~--~~---~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      +||.+.++.-... -+-|||.-..|++ .+.+........|  .+   ..|.+.+..||.++++|++.+
T Consensus       307 wIDPD~fPllv~yWE~tF~Idl~~PqI-GvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~  374 (383)
T PF01216_consen  307 WIDPDDFPLLVPYWEKTFGIDLSRPQI-GVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT  374 (383)
T ss_dssp             EE-GGG-HHHHHHHHHHHTT-TTS-EE-EEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred             EECCCCCchhHHHHHhhcCccccCCce-eEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence            9999988511111 1678999775777 7777766554444  32   258999999999999998865

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.80  E-value=3e-19  Score=133.20  Aligned_cols=101  Identities=30%  Similarity=0.639  Sum_probs=93.0

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..++.++|++.+.+++++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+ .+ .++++.++||+++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            567899999999977789999999999999999999999999999987  899999999988 44 47899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      ++|...  .+|.|.++.+.|.+||++|
T Consensus        79 ~~g~~~--~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEV--KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEE--EEEESSSSHHHHHHHHHHH
T ss_pred             ECCcEE--EEEECCCCHHHHHHHHHcC
Confidence            999885  3899999999999999976

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.79  E-value=3.4e-19  Score=133.92  Aligned_cols=101  Identities=22%  Similarity=0.433  Sum_probs=87.9

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC----CCEEEEEEeCCCC-CC-CCCCCCCCc
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----DNLVIAKIDASAN-EH-PKLQVEEYP  304 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~----~~~~~~~id~~~~-~~-~~~~i~~~P  304 (360)
                      .|..+++++|++.+ ..+++++|.||||||++|+.+.|.|+++++.+++.    .++.++.+||+.+ ++ .+++|+++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47788999999976 67789999999999999999999999999987532    2599999999998 54 478999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      |+++|++|... ...|.|.++.++|.+||
T Consensus        81 tl~~~~~g~~~-~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMMM-KREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcCc-ceecCCCCCHHHHHhhC
Confidence            99999999753 46899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.79  E-value=1e-16  Score=152.05  Aligned_cols=306  Identities=16%  Similarity=0.198  Sum_probs=217.5

Q ss_pred             CCHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcC---CCceEEEe---ccHHHHHHcCCCCCCCCCEEEEE
Q 018164            4 NTVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AAD---NEIQFVET---SNFEVAKVLYPDIKSTDHFLGIV   73 (360)
Q Consensus         4 ~s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~---~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~   73 (360)
                      -+.+.++++++++++++|.|+.++|.   .....|.++| .+.   +.+.|+.+   .+.++|+++++.   +.|++++|
T Consensus         6 l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~   82 (462)
T TIGR01130         6 LTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS---GYPTLKIF   82 (462)
T ss_pred             CCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc---cccEEEEE
Confidence            36678888999999999999999986   4557888888 433   34788764   467899999998   89999999


Q ss_pred             ecCCCCccccCCCCChHHHHHHHhhccCCceeecC-cccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceE
Q 018164           74 KSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLT-DINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIM  152 (360)
Q Consensus        74 ~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~  152 (360)
                      +.+......|.|..+.+.|.+|+.....|.+.+++ .+.+..+.......+|+|+....  ......|.++|..+.....
T Consensus        83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~--~~~~~~~~~~a~~~~~~~~  160 (462)
T TIGR01130        83 RNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLD--SELNDTFLSVAEKLRDVYF  160 (462)
T ss_pred             eCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCC--cHHHHHHHHHHHHhhhccc
Confidence            96543246889999999999999999999888886 56677777666566666665432  3556688999999988655


Q ss_pred             EEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc-cccCCCCC--CHHHHHHHHHHHhcCccCCccccCCCCCCCC
Q 018164          153 FTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS-KFLLESDL--TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN  229 (360)
Q Consensus       153 f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~-~y~~~~~~--~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~  229 (360)
                      +.... . ..   .+...++...  ++++++....... .+.+.|..  +.+.|..|+....-                 
T Consensus       161 ~~~~~-~-~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~-----------------  216 (462)
T TIGR01130       161 FFAHS-S-DV---AAFAKLGAFP--DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL-----------------  216 (462)
T ss_pred             eEEec-C-CH---HHHhhcCCCC--CcEEEecccccccccccccCcccCCHHHHHHHHHHcCC-----------------
Confidence            43222 2 11   5567777653  4443333322222 13445554  66899999988542                 


Q ss_pred             CceEEEcCccccccccccCccEEEEEe--CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCC--CC
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVY--TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE--EY  303 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~--~~  303 (360)
                      ..+..++..++.......  +.+++|+  ......|..+...+.++|+.+++ ..+.|+.+|+... .+ ..+++.  .+
T Consensus       217 p~v~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~~~~~~~  293 (462)
T TIGR01130       217 PLVGEFTQETAAKYFESG--PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFGLKAEKF  293 (462)
T ss_pred             CceEeeCCcchhhHhCCC--CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcCCCccCC
Confidence            247788888888776333  4444443  44555689999999999999985 4799999999876 33 345665  69


Q ss_pred             cEEEEEeCCCccCceEecC-CCCHHHHHHHHHHhcCCCCC
Q 018164          304 PTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~~~~~~~  342 (360)
                      |+++++..... ....+.+ ..+.+.|.+||++.++...+
T Consensus       294 P~~vi~~~~~~-~~y~~~~~~~~~~~i~~fi~~~~~g~~~  332 (462)
T TIGR01130       294 PAVAIQDLEGN-KKYPMDQEEFSSENLEAFVKDFLDGKLK  332 (462)
T ss_pred             ceEEEEeCCcc-cccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence            99999976542 2345555 79999999999998875544

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.79  E-value=5e-19  Score=133.14  Aligned_cols=106  Identities=10%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChh--hH--HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT--CE--TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      ...|..++.+||++.+.+++.++++.|+++||++  |+  .+.|.+.++|..+-...++.|+++|++.+ ++. +++|.+
T Consensus         8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065           8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            4578899999999999999999999999999976  99  78899999998872222799999999999 664 799999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +||+++|++|+.+   .|.|.++.+.|.+||.+..
T Consensus        88 iPTl~lfk~G~~v---~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 EDSIYVFKDDEVI---EYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccEEEEEECCEEE---EeeCCCCHHHHHHHHHHHh
Confidence            9999999999753   5999999999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.78  E-value=9.9e-19  Score=131.84  Aligned_cols=101  Identities=30%  Similarity=0.506  Sum_probs=89.4

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--C-CCC-CCCCCCCcEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~-~~~-~~~i~~~Pti~  307 (360)
                      |..++.++|.+.+.+++++++|.||++||++|+.+.|.|+++++.+.+  .+.++.+||+.  + ++. .+++.++||++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            678899999999988888999999999999999999999999999976  78999999998  4 343 68999999999


Q ss_pred             EEeCCCc---cCceEecCCCCHHHHHHHHH
Q 018164          308 FYPAGDK---ANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       308 ~~~~g~~---~~~~~~~g~~~~~~l~~~i~  334 (360)
                      +|++|+.   ..+..|.|.++.+.|.+||.
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHhC
Confidence            9999872   23578999999999999983

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.6e-16  Score=144.83  Aligned_cols=305  Identities=17%  Similarity=0.176  Sum_probs=218.8

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCC---CceEE---EeccHHHHHHcCCCCCCCCCEEEEEe
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADN---EIQFV---ETSNFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~---~~~F~---~~~~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      +.+.++.+|..++.++|-||.++|+   .+...|.++| .+..   .+..+   .+.+.++|.+|+++   ++|++.+||
T Consensus        31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~---gyPTlkiFr  107 (493)
T KOG0190|consen   31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR---GYPTLKIFR  107 (493)
T ss_pred             ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC---CCCeEEEEe
Confidence            4567889999999999999999996   6788999999 5553   44444   46778899999998   999999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHhhccCCceeecCccc-ccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164           75 SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDIN-SASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMF  153 (360)
Q Consensus        75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f  153 (360)
                      ++.. ...|+|+.+.+.|..|++..+-|.+..+.... ...+.......++-||.+.....   ..+...|....+.+.|
T Consensus       108 nG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~---~~~~~~a~~l~~d~~F  183 (493)
T KOG0190|consen  108 NGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA---ESFFDAASKLRDDYKF  183 (493)
T ss_pred             cCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch---HHHHHHHHhcccccee
Confidence            8654 67999999999999999999999998887544 45565554444555554442222   4566678888888999


Q ss_pred             EEEeCCCcccchhHHhhcCCCCC-CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCce
Q 018164          154 TAVDIADEDLAKPFLTLFGLEES-KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANV  232 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~~~~gi~~~-~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v  232 (360)
                      +.-   ...   ++...+++... .+++ +++.......+.|.|.++.+.|.+||+....                 ..|
T Consensus       184 ~~t---s~~---~~~~~~~~~~~~~~~i-~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~-----------------plv  239 (493)
T KOG0190|consen  184 AHT---SDS---DVAKKLELNTEGTFPI-VLFKKFDELLVKYDGSFTPELLKKFIQENSL-----------------PLV  239 (493)
T ss_pred             ecc---CcH---hHHhhccCCCCCcceE-EeccccccchhhcccccCHHHHHHHHHHhcc-----------------ccc
Confidence            832   222   67788887632 1444 4555444555566889999999999998653                 235


Q ss_pred             EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-CCCCCCC--CCcEEEE
Q 018164          233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-HPKLQVE--EYPTLLF  308 (360)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~~~~~i~--~~Pti~~  308 (360)
                      ...+..++.......-..-+++|-..-|..-...++.+.++|+.+++  .+.|+.+|...+ . +..+++.  +.|..++
T Consensus       240 ~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v  317 (493)
T KOG0190|consen  240 TEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILIDPESFARVLEFFGLEEEQLPIRAV  317 (493)
T ss_pred             ceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEChHHhhHHHHhcCcccccCCeeEE
Confidence            66666666665533334445555556677778889999999999998  899999977666 2 2345554  5673444


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      ..++...+...=.+..+.++|..|+.+.+....+
T Consensus       318 ~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~  351 (493)
T KOG0190|consen  318 ILNEDGSKYPLEEEELDQENIESFVKDFLDGKVK  351 (493)
T ss_pred             eeccccccccCccccccHHHHHHHHHHHhcCccc
Confidence            4455444333333568888999999999886654

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.76  E-value=2e-18  Score=128.07  Aligned_cols=99  Identities=19%  Similarity=0.359  Sum_probs=82.5

Q ss_pred             ceEEEcCccccccccccCccEEEEEeC--CCCh---hhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----CC-CCC-CC
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYT--PWCV---TCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EHP-KL  298 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~-~~~-~~  298 (360)
                      .+..|+..||++.| ..++.+||.|||  |||+   +|+.+.|.+...+.      .+.+|.|||+     .+ +++ ++
T Consensus         2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHh
Confidence            36789999999987 677889999999  9999   77777777666542      4899999994     44 554 78


Q ss_pred             CCC--CCcEEEEEeCCCccCceEecCC-CCHHHHHHHHHHh
Q 018164          299 QVE--EYPTLLFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ  336 (360)
Q Consensus       299 ~i~--~~Pti~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~  336 (360)
                      +|+  +||||++|++|....|+.|.|. |+.++|.+||+++
T Consensus        75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999  9999999999864447899996 9999999999986

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.75  E-value=6.7e-18  Score=125.35  Aligned_cols=98  Identities=20%  Similarity=0.427  Sum_probs=84.6

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      .|..+++++|++.+ .  +.++|.|||+||++|+.+.|.|++++..++. .++.++.+|++.+ .+ .+++|.++||+++
T Consensus         2 ~v~~l~~~~f~~~~-~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02994           2 NVVELTDSNWTLVL-E--GEWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH   77 (101)
T ss_pred             ceEEcChhhHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence            47889999999876 2  3389999999999999999999999998764 2699999999988 45 3689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      |++|..   .+|.|.++.++|.+||++
T Consensus        78 ~~~g~~---~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          78 AKDGVF---RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             eCCCCE---EEecCCCCHHHHHHHHhC
Confidence            988853   589999999999999974

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.75  E-value=2.4e-15  Score=143.18  Aligned_cols=287  Identities=15%  Similarity=0.197  Sum_probs=203.2

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hc---CCCceEEE---eccHHHHHHcCCCCCCCCCEEEEEe
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AA---DNEIQFVE---TSNFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~---~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      +.+.+++++++++.++|.|+.++|.   .....|.++| .+   ..++.|+.   +.+.++|+++++.   +.|++.+|+
T Consensus        38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~~  114 (477)
T PTZ00102         38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR---GYPTIKFFN  114 (477)
T ss_pred             chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC---cccEEEEEE
Confidence            4567888899899999999999986   4566788888 43   25688885   4578999999998   899999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCce-EEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164           75 SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKL-QVYVFAKADDLKSLLEPLEDIARNFKGKIMF  153 (360)
Q Consensus        75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f  153 (360)
                      .+.  ...|.|..+.+.|.+|+.....|.+.+++...-.......... ++..+...  .......+.++|..+++...|
T Consensus       115 ~g~--~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~a~~~~~~~~F  190 (477)
T PTZ00102        115 KGN--PVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSK--DSELYKKFEEVADKHREHAKF  190 (477)
T ss_pred             CCc--eEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccC--CcHHHHHHHHHHHhccccceE
Confidence            754  3389999999999999999999999998876543333233332 23333322  245667889999999887777


Q ss_pred             EEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceE
Q 018164          154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQ  233 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~  233 (360)
                      +.+....               . +.+.++....  ....+.+..+.++|.+||+...-                 ..+.
T Consensus       191 ~~~~~~~---------------~-~~~~~~~~~~--~~~~~~~~~~~~~l~~fI~~~~~-----------------P~~~  235 (477)
T PTZ00102        191 FVKKHEG---------------K-NKIYVLHKDE--EGVELFMGKTKEELEEFVSTESF-----------------PLFA  235 (477)
T ss_pred             EEEcCCC---------------C-CcEEEEecCC--CCcccCCCCCHHHHHHHHHHcCC-----------------Ccee
Confidence            6543211               1 3443443322  22222244688999999987421                 2477


Q ss_pred             EEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C-CCCCCCCCcEEEEEe
Q 018164          234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-PKLQVEEYPTLLFYP  310 (360)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~Pti~~~~  310 (360)
                      .++..++.... .++.++++++.  -|..+..+.+.++++|+.+++  ++.|+.+|++...  + ..+++..+|++++..
T Consensus       236 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~  310 (477)
T PTZ00102        236 EINAENYRRYI-SSGKDLVWFCG--TTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQS  310 (477)
T ss_pred             ecCccchHHHh-cCCccEEEEec--CHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEc
Confidence            88888887765 44555443332  355666788999999999988  7999999999873  2 367899999998876


Q ss_pred             CCCccCceEecC----CCCHHHHHHHHHHhcCCCC
Q 018164          311 AGDKANPIKVSA----RSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       311 ~g~~~~~~~~~g----~~~~~~l~~~i~~~~~~~~  341 (360)
                      .+.+   ..+.+    .++.+.|.+|+++..+...
T Consensus       311 ~~~~---y~~~~~~~~~~~~~~l~~Fv~~~~~gk~  342 (477)
T PTZ00102        311 PAGR---YLLPPAKESFDSVEALIEFFKDVEAGKV  342 (477)
T ss_pred             CCcc---cCCCccccccCCHHHHHHHHHHHhCCCC
Confidence            4332   22333    3789999999999887543

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.75  E-value=8e-18  Score=126.51  Aligned_cols=101  Identities=28%  Similarity=0.642  Sum_probs=86.8

Q ss_pred             ceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCC--CCCCCCCc
Q 018164          231 NVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP--KLQVEEYP  304 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~--~~~i~~~P  304 (360)
                      .|..++.++|+.++.  +++++++|.||++||++|+.+.|.|.++++.+++ .++.++.+|++.+  .+.  .+++.++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            367888899999884  4578999999999999999999999999999985 2699999999983  443  47999999


Q ss_pred             EEEEEeCCCccCceEecCC-CCHHHHHHHH
Q 018164          305 TLLFYPAGDKANPIKVSAR-SSSKNIAAFI  333 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~-~~~~~l~~~i  333 (360)
                      |+++|++|.. .+..|.|. ++.++|++||
T Consensus        81 ti~~f~~~~~-~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSR-QPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCC-CceeccCCCCCHHHHHhhC
Confidence            9999988865 37899994 8999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.74  E-value=9.1e-18  Score=125.20  Aligned_cols=99  Identities=29%  Similarity=0.530  Sum_probs=88.7

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..+++.+|.+.+.+..++++|+||++||++|+.+.|.|.++++.+.+  .+.++.+|++.+ .+ ..+++.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            567888999998877777899999999999999999999999999986  799999999988 45 47899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHH
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ++|.. .+..|.|.++.++|.+|+
T Consensus        80 ~~~~~-~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKN-SPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCc-ceeecCCCCCHHHHHHHh
Confidence            98844 478999999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.73  E-value=3.6e-17  Score=123.20  Aligned_cols=104  Identities=24%  Similarity=0.560  Sum_probs=92.3

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      ..|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|+++++.+.+  ++.++.+|++.+ .+ .++++.++||++
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   80 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence            45788999999988777889999999999999999999999999999986  799999999988 44 468999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|...  .++.|..+.+.|..||.+++
T Consensus        81 ~~~~G~~~--~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         81 LFKNGEVA--ATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEeCCeEE--EEecCCCCHHHHHHHHHHhc
Confidence            99988664  47889999999999999875

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.73  E-value=2e-17  Score=123.05  Aligned_cols=98  Identities=29%  Similarity=0.577  Sum_probs=85.2

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      |..+++++|++.+.+  ++++|.||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ .+ ..+++.++||+++
T Consensus         2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            567889999998843  3599999999999999999999999999976 34799999999988 44 4789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHH
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      |++|..  ..+|.|.++.+.|.+||
T Consensus        80 ~~~g~~--~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDGEK--VDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCCCe--eeEeeCCCCHHHHHhhC
Confidence            998875  45899999999999885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.1e-17  Score=139.27  Aligned_cols=106  Identities=24%  Similarity=0.537  Sum_probs=96.8

Q ss_pred             CceEEEcCcccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          230 ANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      ..|..+|..||.+.|...  ..||+|+||+|||++|+.+.|.+++++..++|  .+.+++|||+.+ ++. .|+|.++||
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence            348999999999999544  45999999999999999999999999999999  899999999999 775 789999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      ++.|.+|..+.  .|.|....+.+.+||.+++..
T Consensus       101 V~af~dGqpVd--gF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         101 VYAFKDGQPVD--GFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EEEeeCCcCcc--ccCCCCcHHHHHHHHHHhcCh
Confidence            99999998864  789999999999999999886

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.72  E-value=2.6e-17  Score=137.68  Aligned_cols=108  Identities=27%  Similarity=0.539  Sum_probs=92.7

Q ss_pred             CCceEEEcCcccccccccc----CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNS----HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~  302 (360)
                      ...|..++.++|++.+..+    .++++|.||+|||++|+.+.|.|+++++.+++  .+.++.+|++.+ ++ .+++|.+
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence            3568999999999987543    57999999999999999999999999999987  799999999998 55 4789999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +||+++|++|...  ..+.|.++.++|.+|+.+.....
T Consensus       107 ~PTl~~f~~G~~v--~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        107 YPTLLLFDKGKMY--QYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             CCEEEEEECCEEE--EeeCCCCCHHHHHHHHHHHHHhh
Confidence            9999999988653  23458899999999999887544

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.72  E-value=4.8e-17  Score=121.71  Aligned_cols=101  Identities=38%  Similarity=0.719  Sum_probs=88.3

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-C-CCC-CCCCCCCcEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~-~~~-~~~i~~~Pti~~  308 (360)
                      |..+++++|++.+.++.++++|+||++||++|+.+.|.|.++++.++...++.++.+|++. + .+. ++++.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            5678889999988667779999999999999999999999999999744479999999999 6 454 689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHH
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      |..|... ...|.|.++.+.|.+||
T Consensus        82 ~~~~~~~-~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTE-PVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCC-ccccCCccCHHHHHhhC
Confidence            9888543 67899999999999986

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.72  E-value=3.3e-17  Score=120.40  Aligned_cols=92  Identities=18%  Similarity=0.445  Sum_probs=80.6

Q ss_pred             ccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCcc
Q 018164          239 TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKA  315 (360)
Q Consensus       239 ~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~  315 (360)
                      +|++.+.++ +++++|.||++||++|+.+.|.+++++..+.+  .+.++.+|++.+ .+ .++++.++|++++|++|+..
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence            677777555 67999999999999999999999999999976  699999999998 55 47899999999999988664


Q ss_pred             CceEecCCCCHHHHHHHHH
Q 018164          316 NPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~i~  334 (360)
                        .++.|..+.+.|..||+
T Consensus        80 --~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          80 --DGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             --eeecCCCCHHHHHHHhC
Confidence              47999999999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.71  E-value=2.3e-17  Score=124.20  Aligned_cols=98  Identities=14%  Similarity=0.352  Sum_probs=83.1

Q ss_pred             EcCccccccccc--cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEe
Q 018164          235 VVGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYP  310 (360)
Q Consensus       235 l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~  310 (360)
                      ++.++|.+.+..  .+++++|.||+|||++|+.+.|.|+++++.+.+. ++.++++|++.+ .+ ..++|.++||+++|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~   87 (111)
T cd02963           9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGII   87 (111)
T ss_pred             eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence            455677765543  5789999999999999999999999999999753 689999999987 44 468999999999999


Q ss_pred             CCCccCceEecCCCCHHHHHHHHHH
Q 018164          311 AGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       311 ~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      +|+.  ..++.|..+.+.|.+||.+
T Consensus        88 ~g~~--~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          88 NGQV--TFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             CCEE--EEEecCCCCHHHHHHHHhc
Confidence            8865  3567899999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.71  E-value=3.6e-17  Score=121.70  Aligned_cols=100  Identities=40%  Similarity=0.803  Sum_probs=88.4

Q ss_pred             EcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCC
Q 018164          235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAG  312 (360)
Q Consensus       235 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g  312 (360)
                      |++++|++.+. ++++++|+||++||+.|+.+.+.|++++..+++..++.++.+|++.+ .+ .++++.++|++++|+.|
T Consensus         1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            45678888875 78899999999999999999999999999998755699999999988 55 47899999999999998


Q ss_pred             CccCceEecCCCCHHHHHHHHHHhc
Q 018164          313 DKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       313 ~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +.  +..|.|..+.+.|..||.+++
T Consensus        80 ~~--~~~~~g~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        80 KK--PVDYEGGRDLEAIVEFVNEKS  102 (102)
T ss_pred             Cc--ceeecCCCCHHHHHHHHHhcC
Confidence            76  578999999999999998763

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.70  E-value=7.2e-17  Score=118.89  Aligned_cols=82  Identities=18%  Similarity=0.387  Sum_probs=72.3

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CC-CCCCCCCCcEEEEEeCCCccCceEecC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      ..+++++|.|||+||++|+.+.|.|+++++.+++   +.++.+|++ .+ ++ ..++|.++||+++|++| .  ..+|.|
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~--~~~~~G   89 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P--RVRYNG   89 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c--eeEecC
Confidence            4578999999999999999999999999999964   788999998 55 44 47899999999999988 4  568999


Q ss_pred             CCCHHHHHHHH
Q 018164          323 RSSSKNIAAFI  333 (360)
Q Consensus       323 ~~~~~~l~~~i  333 (360)
                      .++.+.|.+||
T Consensus        90 ~~~~~~l~~f~  100 (100)
T cd02999          90 TRTLDSLAAFY  100 (100)
T ss_pred             CCCHHHHHhhC
Confidence            99999999986

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PHA02278 thioredoxin-like protein

Probab=99.68  E-value=9.7e-17  Score=118.04  Aligned_cols=90  Identities=16%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----C-CCCCCCCCcEEEEEeC
Q 018164          238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----H-PKLQVEEYPTLLFYPA  311 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~i~~~Pti~~~~~  311 (360)
                      ++|.+.+ .++++++|.|||+||++|+.+.|.++++++.+..  ++.|+.+|++.+.     + ..++|.++||+++|++
T Consensus         5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            4567766 5789999999999999999999999999988654  5678999998752     2 3689999999999999


Q ss_pred             CCccCceEecCCCCHHHHHHH
Q 018164          312 GDKANPIKVSARSSSKNIAAF  332 (360)
Q Consensus       312 g~~~~~~~~~g~~~~~~l~~~  332 (360)
                      |+.+  -++.|..+.+.|.++
T Consensus        82 G~~v--~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLV--KKYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEE--EEEeCCCCHHHHHhh
Confidence            9775  378898888888765

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.67  E-value=1e-16  Score=118.65  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             cccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCc
Q 018164          238 KTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       238 ~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      ++|++.+. +.+++++|.|||+||++|+.|.|.+++++..+.+  .+.|+++|++.+ ++. .++|.+.||+++|++|+.
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~   80 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH   80 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence            45666664 3577999999999999999999999999999976  689999999999 564 789999999999999988


Q ss_pred             cCceEecC
Q 018164          315 ANPIKVSA  322 (360)
Q Consensus       315 ~~~~~~~g  322 (360)
                      +.  +..|
T Consensus        81 v~--~~~G   86 (114)
T cd02954          81 MK--IDLG   86 (114)
T ss_pred             EE--EEcC
Confidence            64  4444

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.67  E-value=4.6e-16  Score=117.54  Aligned_cols=102  Identities=23%  Similarity=0.453  Sum_probs=84.1

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC---CC-CCCCCCCCcE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EH-PKLQVEEYPT  305 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~---~~-~~~~i~~~Pt  305 (360)
                      ++..+++++|++.+.++.++++|.||++||++|+.+.|.|++++..+++.. .+.++.+||+..   ++ .++++.++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            578899999999998878899999999999999999999999999986532 599999998753   33 3689999999


Q ss_pred             EEEEeCCCccCc--eEecCC-CCHHHHHHH
Q 018164          306 LLFYPAGDKANP--IKVSAR-SSSKNIAAF  332 (360)
Q Consensus       306 i~~~~~g~~~~~--~~~~g~-~~~~~l~~~  332 (360)
                      +++|+.|.+..+  ..|.|. +..+++..-
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNELREA  111 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence            999999876433  567775 777776543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.67  E-value=3.9e-16  Score=116.52  Aligned_cols=99  Identities=23%  Similarity=0.498  Sum_probs=85.1

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--C-CC-CCCCCCCCcEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~-~~-~~~~i~~~Pti~  307 (360)
                      |..++..+|++.+ .++++++|.||++||++|+.+.|.+.++++.+.+...+.++.+|++.  + .+ ..+++.++||++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5678888999887 55669999999999999999999999999999743479999999998  4 33 367999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHH
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      +|++|+.  ..+|.|..+.+.+.+||
T Consensus        81 ~~~~g~~--~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKF--VEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCe--eEEeCCCCCHHHHHhhC
Confidence            9998875  45899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=99.66  E-value=5.5e-16  Score=121.42  Aligned_cols=103  Identities=20%  Similarity=0.499  Sum_probs=89.6

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.+..++..+|++.+ +.+++++|.||++||++|+.+.|.+.++++.+.+  ++.++.+|++.+ ++ .+++|.++|+++
T Consensus        35 ~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptli  111 (139)
T PRK10996         35 GEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIM  111 (139)
T ss_pred             CCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence            446667888999876 5689999999999999999999999999999876  799999999988 55 478999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+..  .++.|..+.+.|.+||++.+
T Consensus       112 i~~~G~~v--~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        112 IFKNGQVV--DMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEECCEEE--EEEcCCCCHHHHHHHHHHhC
Confidence            99988764  47889999999999999763

>PLN02309 5'-adenylylsulfate reductase

Probab=99.66  E-value=4.2e-16  Score=143.10  Aligned_cols=106  Identities=26%  Similarity=0.583  Sum_probs=92.4

Q ss_pred             CCceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CCC--CCCCCC
Q 018164          229 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP--KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~~--~~~i~~  302 (360)
                      ...|..++.++|++.+.  +.+++++|.||+|||++|+.|.|.|+++++.+.+. ++.|+.+|++ .+ ++.  .++|.+
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence            45788999999999873  57889999999999999999999999999999763 6999999999 54 444  489999


Q ss_pred             CcEEEEEeCCCccCceEecC-CCCHHHHHHHHHHh
Q 018164          303 YPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQ  336 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~  336 (360)
                      +||+++|++|.. .++.|.| .++.++|+.||+..
T Consensus       423 ~PTil~f~~g~~-~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSS-RPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCC-CeeecCCCCcCHHHHHHHHHHh
Confidence            999999999976 4889985 79999999999864

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.66  E-value=5.7e-16  Score=142.24  Aligned_cols=105  Identities=25%  Similarity=0.559  Sum_probs=91.3

Q ss_pred             CCceEEEcCcccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C--CCCCCCC
Q 018164          229 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H--PKLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~--~~~~i~~  302 (360)
                      ...|..|+.+||++.+.  +.+++++|.||+|||++|+.+.|.|+++|+.+++. .+.|+.+|++.+.  +  ..++|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            45788999999999884  56889999999999999999999999999999763 4899999998763  3  3689999


Q ss_pred             CcEEEEEeCCCccCceEec-CCCCHHHHHHHHHH
Q 018164          303 YPTLLFYPAGDKANPIKVS-ARSSSKNIAAFIKE  335 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~-g~~~~~~l~~~i~~  335 (360)
                      +||+++|++|.. .++.|. |.++.++|..||+-
T Consensus       429 ~PTii~Fk~g~~-~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 FPTILFFPKHSS-RPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             cceEEEEECCCC-CceeCCCCCCCHHHHHHHHHh
Confidence            999999999965 478897 58999999999984

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.63  E-value=1.1e-15  Score=113.31  Aligned_cols=95  Identities=20%  Similarity=0.435  Sum_probs=79.0

Q ss_pred             cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCc
Q 018164          236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~  314 (360)
                      +.++|++.+ +++++++|+|||+||++|+.+.|.+.+++..+.+ ..+.|+.+|++..++ ..++|+++||+++|++|+.
T Consensus         6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948           6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence            457788876 5788999999999999999999999999999874 258899999984444 4789999999999999876


Q ss_pred             cCceEecCCCCHHHHHHHHHH
Q 018164          315 ANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      .  .+..| .+.+.+.++|.+
T Consensus        84 ~--~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          84 V--AVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             E--EEEec-CChHHHHHHHhh
Confidence            5  35556 488999998875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR01068 thioredoxin thioredoxin

Probab=99.63  E-value=1.2e-15  Score=113.17  Aligned_cols=98  Identities=26%  Similarity=0.583  Sum_probs=84.6

Q ss_pred             cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCC
Q 018164          236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~  313 (360)
                      +.++|.+.+.+..++++|+||++||++|..+.+.+.++++.+.+  ++.|+.+|++.+ .+ .++++.++|++++|++|.
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~   79 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK   79 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence            45677787766677999999999999999999999999999876  799999999988 33 478999999999999887


Q ss_pred             ccCceEecCCCCHHHHHHHHHHhc
Q 018164          314 KANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       314 ~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ..  ..+.|..+.+.|.+||++++
T Consensus        80 ~~--~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        80 EV--DRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             Ee--eeecCCCCHHHHHHHHHhhC
Confidence            64  46789999999999998763

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.63  E-value=1.2e-15  Score=113.28  Aligned_cols=92  Identities=16%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----C-CCCCCCCCcEEEEEeC
Q 018164          238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H-PKLQVEEYPTLLFYPA  311 (360)
Q Consensus       238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~-~~~~i~~~Pti~~~~~  311 (360)
                      ++|++.+.+. +++++|.|||+||++|+.+.|.++++++.+ .  ++.|+.+|++.+.    + .+++|.++||+++|++
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            4677776543 789999999999999999999999999999 3  6899999998873    2 3679999999999998


Q ss_pred             CCccCceEecCCCCHHHHHHHHHH
Q 018164          312 GDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       312 g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      |+.+  .++.| ...+.|.+-|..
T Consensus        81 G~~v--~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          81 GEKI--HEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             CeEE--EEEeC-CCHHHHHHHHHh
Confidence            8764  57888 455666666543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.62  E-value=1.7e-14  Score=120.94  Aligned_cols=211  Identities=14%  Similarity=0.185  Sum_probs=154.9

Q ss_pred             cCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc-
Q 018164            3 TNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY-   80 (360)
Q Consensus         3 i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~-   80 (360)
                      ..|.++++......+-.|||||...++..++.|.++| -+++++.|.+...... .....+   +.+ +.+|++..... 
T Consensus       113 f~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V~~gD~~-~~~~~~---~~~-~~~f~pd~~~~~  187 (375)
T KOG0912|consen  113 FESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLVGFGDLL-KPHEPP---GKN-ILVFDPDHSEPN  187 (375)
T ss_pred             HHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEeeccccc-cCCCCC---CCc-eEEeCCCcCCcC
Confidence            4566777777666778999999999999999999999 7789999988775432 222222   333 66777643222 


Q ss_pred             cccCCCC-ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHH-HHHHhhcCceEEEEE
Q 018164           81 TGYEETF-IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLE-DIARNFKGKIMFTAV  156 (360)
Q Consensus        81 ~~y~g~~-~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~-~la~~~~~~i~f~~v  156 (360)
                      ..|.|.+ +.+.|..||+....|+|+++|-+|.+.+...+.|.+++|..+.  ..-+.+..+.+ ++-.+- ..|+|...
T Consensus       188 ~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~-~~in~l~A  266 (375)
T KOG0912|consen  188 HEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDET-LAINFLTA  266 (375)
T ss_pred             cccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhh-hccceeec
Confidence            3799987 5889999999999999999999999999999999999998876  33344444332 222222 23999999


Q ss_pred             eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-CCCCCHHHHHHHHHHHhcCccCCccccC
Q 018164          157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-ESDLTPSNIEEFCSRLLHGTLTPYLKSQ  222 (360)
Q Consensus       157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~~~~~~~~i~~fi~~~~~g~~~~~~~se  222 (360)
                      ||..+.   ..+..+|=+....|+++|-.......++- +.-..+..|.+|+.+..+|++...++-.
T Consensus       267 DG~~f~---hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sgklHrefH~~  330 (375)
T KOG0912|consen  267 DGKVFK---HPLRHLGKSPDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLHSGKLHREFHEG  330 (375)
T ss_pred             Ccceec---chHHHhCCCcccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHhCchhhHHhhcC
Confidence            999875   77888998866677766655544333321 2235678999999999999987665543

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.62  E-value=1.8e-15  Score=118.97  Aligned_cols=99  Identities=20%  Similarity=0.394  Sum_probs=79.8

Q ss_pred             ccCCCCCCCCCceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-
Q 018164          220 KSQPIPDNTNANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-  296 (360)
Q Consensus       220 ~se~~p~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-  296 (360)
                      .+++.|+. ...|..++.++|++.+.. .+++++|.||++||++|+.+.|.|+++++.+.+. ++.|+++|++.+ ++. 
T Consensus        19 ~~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~   96 (152)
T cd02962          19 APQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAE   96 (152)
T ss_pred             hCCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHH
Confidence            34444433 467888999999998743 4578999999999999999999999999998642 699999999998 554 


Q ss_pred             CCCCCC------CcEEEEEeCCCccCceEecC
Q 018164          297 KLQVEE------YPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       297 ~~~i~~------~Pti~~~~~g~~~~~~~~~g  322 (360)
                      .++|.+      +||+++|++|+.+.  ++.|
T Consensus        97 ~~~V~~~~~v~~~PT~ilf~~Gk~v~--r~~G  126 (152)
T cd02962          97 KFRVSTSPLSKQLPTIILFQGGKEVA--RRPY  126 (152)
T ss_pred             HcCceecCCcCCCCEEEEEECCEEEE--EEec
Confidence            578777      99999999998763  5554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.61  E-value=4.1e-15  Score=110.81  Aligned_cols=94  Identities=20%  Similarity=0.451  Sum_probs=79.5

Q ss_pred             ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCc
Q 018164          238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~  314 (360)
                      ++|++.  .+++.++|.||++||++|+.+.|.|+++++.+++. .++.++.+|++.+ .+ ..++|.++||+++|++| .
T Consensus         7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~   83 (104)
T cd03000           7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L   83 (104)
T ss_pred             hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence            677774  35779999999999999999999999999998642 2599999999887 55 46899999999999765 3


Q ss_pred             cCceEecCCCCHHHHHHHHHHh
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                        ..+|.|.++.+.|.+|+++.
T Consensus        84 --~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          84 --AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             --ceeecCCCCHHHHHHHHHhh
Confidence              35799999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.61  E-value=2.5e-15  Score=113.61  Aligned_cols=88  Identities=24%  Similarity=0.414  Sum_probs=75.6

Q ss_pred             CceEEEcCccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEE
Q 018164          230 ANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti  306 (360)
                      +.|..++.++|.+.+.+.+  ++++|.||+|||++|+.+.|.++++|..+.   ++.|+++|++.+.+ .+++|.++||+
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~   80 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL   80 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence            5678898999999886653  899999999999999999999999999985   48899999998744 36899999999


Q ss_pred             EEEeCCCccCceEecC
Q 018164          307 LFYPAGDKANPIKVSA  322 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g  322 (360)
                      ++|++|+.+.  ++.|
T Consensus        81 ~~f~~G~~v~--~~~G   94 (113)
T cd02957          81 LVYKNGELID--NIVG   94 (113)
T ss_pred             EEEECCEEEE--EEec
Confidence            9999997753  5555

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.60  E-value=1.2e-14  Score=107.52  Aligned_cols=95  Identities=19%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             ccCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164            2 RTNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR   79 (360)
Q Consensus         2 ~i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~   79 (360)
                      +|+|.+++++|++ +++++|||||.+.+++.++.|.++| .+++++.|+++.++++++.+++.    .|++++|+++++.
T Consensus         4 ~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~e~   79 (102)
T cd03066           4 IINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFMEE   79 (102)
T ss_pred             EcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCCCC
Confidence            5889999999999 9999999999998999999999999 77799999999999999998875    6999999987777


Q ss_pred             cccc-CCCCChHHHHHHHhhcc
Q 018164           80 YTGY-EETFIMDKILQFLNYNK  100 (360)
Q Consensus        80 ~~~y-~g~~~~~~l~~fi~~~~  100 (360)
                      ...| .|..+.+.|.+||+.+.
T Consensus        80 ~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          80 PVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CcccCCCCCCHHHHHHHHHHhc
Confidence            7789 78889999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.60  E-value=1.2e-14  Score=106.98  Aligned_cols=94  Identities=29%  Similarity=0.422  Sum_probs=86.0

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      +|+|.+++++|++.++++|||||.+.+++.++.|.++| .+++++.|+++++++++++++++    .|++++||+.++..
T Consensus         3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~   78 (97)
T cd02981           3 ELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEEP   78 (97)
T ss_pred             ecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccCC
Confidence            58899999999999999999999998999999999999 77789999999999999998775    68999999987778


Q ss_pred             cccCCCCChHHHHHHHhhc
Q 018164           81 TGYEETFIMDKILQFLNYN   99 (360)
Q Consensus        81 ~~y~g~~~~~~l~~fi~~~   99 (360)
                      ..|+|..+.++|.+||..+
T Consensus        79 ~~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          79 VEYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             ccCCCCCCHHHHHHHHHhC
Confidence            8899999999999999854

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.60  E-value=5.9e-15  Score=108.41  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      ...++..||++.+ ..+++++|.||++|  |+.|..+.|.++++++.+.+  .+.|+++|++.+ .+. .++|.++||++
T Consensus        12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            4468889999887 77899999999997  99999999999999999987  789999999999 554 78999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHH
Q 018164          308 FYPAGDKANPIKVSARSSSKNIA  330 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~  330 (360)
                      +|++|+..  -++.|..+.+.+.
T Consensus        89 ~fkdGk~v--~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYV--GVLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEE--EEEeCccCHHHHh
Confidence            99999775  3678888777664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.60  E-value=2.5e-12  Score=110.35  Aligned_cols=305  Identities=16%  Similarity=0.130  Sum_probs=193.2

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCCc--c------HHHHHHHH-hc--CCCceEEEec---cHHHHHHcCCCCCCCCCEE
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEGS--D------YEEFVKTA-AA--DNEIQFVETS---NFEVAKVLYPDIKSTDHFL   70 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~~--~------~~~f~~~a-~~--~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i   70 (360)
                      |...+++.+++.++.+|.|+.+..+.  .      .+.+.++| +.  ..++.||.+.   +..+|+++|+.   ..++|
T Consensus        40 neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~---E~~Si  116 (383)
T PF01216_consen   40 NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE---EEGSI  116 (383)
T ss_dssp             -TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-----STTEE
T ss_pred             chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc---ccCcE
Confidence            45567889999999999999877652  1      24456666 43  4789999855   67899999998   78999


Q ss_pred             EEEecCCCCccccCCCCChHHHHHHHhhccCCceeecCcccccccc-c-CCCceEEEEEEeccchHHHHHHHHHHHHhhc
Q 018164           71 GIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVH-S-SPIKLQVYVFAKADDLKSLLEPLEDIARNFK  148 (360)
Q Consensus        71 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~-~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~  148 (360)
                      .+|+  ++..+.|+|.++++.|..||..-.-.+|..++.+.-.+.+ + ...+.+|.+|.+. ... ....|.++|..|+
T Consensus       117 yVfk--d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~-~s~-~yk~FeeAAe~F~  192 (383)
T PF01216_consen  117 YVFK--DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSE-DSE-HYKEFEEAAEHFQ  192 (383)
T ss_dssp             EEEE--TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SST-TSH-HHHHHHHHHHHCT
T ss_pred             EEEE--CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCC-CcH-HHHHHHHHHHhhc
Confidence            9999  5678899999999999999998888889888876543333 2 2245667776554 222 2347899999999


Q ss_pred             CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          149 GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       149 ~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                      .-|.|..+      |.+.+++.+|++.  -.+-.+-+...........+.+.+.|.+||++...                
T Consensus       193 p~IkFfAt------fd~~vAk~L~lK~--nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r----------------  248 (383)
T PF01216_consen  193 PYIKFFAT------FDKKVAKKLGLKL--NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR----------------  248 (383)
T ss_dssp             TTSEEEEE-------SHHHHHHHT-ST--T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S----------------
T ss_pred             CceeEEEE------ecchhhhhcCccc--cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch----------------
Confidence            99999775      2247889999872  22322333322222222345799999999999643                


Q ss_pred             CCceEEEcCcccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C----CCCCC
Q 018164          229 NANVQIVVGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P----KLQVE  301 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~  301 (360)
                       ..++++...++-++.. +-++..+|-|.....+.-..+..++.++|+.-..++++.|++||-+.-.+  +    .|+|.
T Consensus       249 -ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id  327 (383)
T PF01216_consen  249 -PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID  327 (383)
T ss_dssp             --SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred             -hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence             2467888877555442 33667888888888888889999999999998877789999999776622  1    23433


Q ss_pred             -CCcEEEEEeCCCccCceEec-----CCCCHHHHHHHHHHhcCCCCC
Q 018164          302 -EYPTLLFYPAGDKANPIKVS-----ARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       302 -~~Pti~~~~~g~~~~~~~~~-----g~~~~~~l~~~i~~~~~~~~~  342 (360)
                       .-|.|-+..-.... .+-+.     ...+++.|..||.+.+.....
T Consensus       328 l~~PqIGvVnvtdad-svW~dm~d~~d~pt~~~LedWieDVlsg~i~  373 (383)
T PF01216_consen  328 LSRPQIGVVNVTDAD-SVWMDMDDDDDLPTAEELEDWIEDVLSGKIN  373 (383)
T ss_dssp             TTS-EEEEEETTTSE-EEEC-STTTSS---HHHHHHHHHHHHCTCCT
T ss_pred             ccCCceeEEeccccc-cchhccCCcccCCcHHHHHHHHHHHhcCCCC
Confidence             13999888665443 34333     135889999999999976654

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.59  E-value=1e-15  Score=127.83  Aligned_cols=92  Identities=17%  Similarity=0.449  Sum_probs=80.5

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      .++..|+|.||||||+||+++.|+|.+++..++... -++++++||+.. .+. +++|++||||.+|++|.-   +.|.|
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a---~dYRG  117 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA---IDYRG  117 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee---eecCC
Confidence            356789999999999999999999999999987643 699999999998 554 799999999999987744   58999


Q ss_pred             CCCHHHHHHHHHHhcCCC
Q 018164          323 RSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~~~~  340 (360)
                      .|+.+.|+.|-.+-.+.-
T Consensus       118 ~R~Kd~iieFAhR~a~ai  135 (468)
T KOG4277|consen  118 GREKDAIIEFAHRCAAAI  135 (468)
T ss_pred             CccHHHHHHHHHhcccce
Confidence            999999999998776644

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.59  E-value=4.4e-15  Score=109.94  Aligned_cols=98  Identities=39%  Similarity=0.769  Sum_probs=82.4

Q ss_pred             EEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeC
Q 018164          234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPA  311 (360)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~  311 (360)
                      .++.++|.+.+.+ +++++|+||++||++|+.+.+.|.++++.++...++.++.+|++.+ .+ ..+++.++|++++|++
T Consensus         2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            3566788887744 4499999999999999999999999999995334899999999986 44 4789999999999988


Q ss_pred             CCccCceEecCCCCHHHHHHHH
Q 018164          312 GDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       312 g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      |.. ...+|.|..+.+.|.+|+
T Consensus        81 ~~~-~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSK-EPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCc-ccccCCCCcCHHHHHhhC
Confidence            843 367899999999999885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.59  E-value=1.7e-14  Score=107.04  Aligned_cols=94  Identities=21%  Similarity=0.267  Sum_probs=84.1

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEec-----
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKS-----   75 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~-----   75 (360)
                      +|.|.+++++|++.++++|||||.+.+++.++.|.++| .+++++.|+++.++++++++++.     |++++||+     
T Consensus         4 ~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~-----~~ivl~~p~~~~~   78 (104)
T cd03069           4 ELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGYG-----EGVVLFRPPRLSN   78 (104)
T ss_pred             ccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCCC-----CceEEEechhhhc
Confidence            58899999999999999999999998889999999999 77799999999999999988763     78999954     


Q ss_pred             -CCCCccccCCCCChHHHHHHHhhcc
Q 018164           76 -EPDRYTGYEETFIMDKILQFLNYNK  100 (360)
Q Consensus        76 -~~~~~~~y~g~~~~~~l~~fi~~~~  100 (360)
                       +++....|.|+++.+.|.+||+.++
T Consensus        79 k~de~~~~y~g~~~~~~l~~fi~~~~  104 (104)
T cd03069          79 KFEDSSVKFDGDLDSSKIKKFIRENI  104 (104)
T ss_pred             ccCcccccccCcCCHHHHHHHHHhhC
Confidence             6677778999999999999998753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.58  E-value=9.6e-15  Score=109.98  Aligned_cols=98  Identities=22%  Similarity=0.392  Sum_probs=80.2

Q ss_pred             CceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          230 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      +.+..++. .+|.+.+ .+++.++|+||+|||++|+.+.|.++++++.+.   ++.|+++|++.+ ++ .++++.++||+
T Consensus         4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~   79 (113)
T cd02989           4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV   79 (113)
T ss_pred             CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence            55777877 7888887 456899999999999999999999999999885   589999999998 45 47899999999


Q ss_pred             EEEeCCCccCceEecC--------CCCHHHHHHHH
Q 018164          307 LFYPAGDKANPIKVSA--------RSSSKNIAAFI  333 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g--------~~~~~~l~~~i  333 (360)
                      ++|++|+.+.  ++.|        ..+.+++.+||
T Consensus        80 l~fk~G~~v~--~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          80 ILFKNGKTVD--RIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEEECCEEEE--EEECccccCCCCCCCHHHHHHHh
Confidence            9999997653  3332        45566666665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.55  E-value=2.1e-14  Score=105.50  Aligned_cols=89  Identities=21%  Similarity=0.369  Sum_probs=77.5

Q ss_pred             ccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceE
Q 018164          242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIK  319 (360)
Q Consensus       242 ~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~  319 (360)
                      ..+...+++++|+||++||+.|+.+.+.++++++.+.+  ++.++.+|++.+ ++ ..+++.++|++++|++|+.+  .+
T Consensus         7 ~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v--~~   82 (97)
T cd02949           7 KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV--KE   82 (97)
T ss_pred             HHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE--EE
Confidence            44566789999999999999999999999999999976  799999999887 44 47899999999999988664  57


Q ss_pred             ecCCCCHHHHHHHHH
Q 018164          320 VSARSSSKNIAAFIK  334 (360)
Q Consensus       320 ~~g~~~~~~l~~~i~  334 (360)
                      +.|..+.+.|.+||+
T Consensus        83 ~~g~~~~~~~~~~l~   97 (97)
T cd02949          83 ISGVKMKSEYREFIE   97 (97)
T ss_pred             EeCCccHHHHHHhhC
Confidence            889999999998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.53  E-value=5e-14  Score=105.33  Aligned_cols=107  Identities=23%  Similarity=0.276  Sum_probs=94.0

Q ss_pred             eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHh---hcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARN---FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~---~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      |+++|.+|...++..+.|..++|| ...+.+.+...++++|++   +++++.|+++|.+.+.   ..++.||+++...|+
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence            578999999999999999998888 446778899999999999   9999999999999885   689999999755666


Q ss_pred             EEEEeCCCccccc-CCCCCCHHHHHHHHHHHhcCc
Q 018164          181 VTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       181 ~~~~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      +++.+..+..+|. +.+.++.++|.+|++++++|+
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            6787776667998 778899999999999999985

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.53  E-value=4.2e-14  Score=108.89  Aligned_cols=101  Identities=14%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             Ccccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE-EEeCC
Q 018164          237 GKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL-FYPAG  312 (360)
Q Consensus       237 ~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~-~~~~g  312 (360)
                      ...|++.+. ..+++++|.|||+||++|+.+.|.++++|+.+.+  .+.|+.+|++++ ++. .++|.+.|+++ +|++|
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence            356777775 4578999999999999999999999999999976  688999999998 665 68999776666 99999


Q ss_pred             CccCceEecC--------CCCHHHHHHHHHHhcCCC
Q 018164          313 DKANPIKVSA--------RSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       313 ~~~~~~~~~g--------~~~~~~l~~~i~~~~~~~  340 (360)
                      ... .-+..|        ..+.++|++-|.......
T Consensus        89 ~~~-vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a  123 (142)
T PLN00410         89 HIM-IDLGTGNNNKINWALKDKQEFIDIVETVYRGA  123 (142)
T ss_pred             eEE-EEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence            742 345667        578899999988876543

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.53  E-value=2.1e-14  Score=107.10  Aligned_cols=91  Identities=21%  Similarity=0.468  Sum_probs=74.8

Q ss_pred             cccccccccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCC-----C-CCCCCCCCcEEEEE
Q 018164          239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE-----H-PKLQVEEYPTLLFY  309 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~-----~-~~~~i~~~Pti~~~  309 (360)
                      .|.+.+ ..+++++|+||++||++|+.+.+.+   .++++.+++  ++.++.+|++.++     + ..+++.++||+++|
T Consensus         3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            345544 5678999999999999999999988   688888876  7999999998752     2 36799999999999


Q ss_pred             eC--CCccCceEecCCCCHHHHHHHHH
Q 018164          310 PA--GDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       310 ~~--g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      ..  |+.  +.++.|..+.+.|.++|+
T Consensus        80 ~~~~g~~--~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          80 GPGGEPE--PLRLPGFLTADEFLEALE  104 (104)
T ss_pred             CCCCCCC--CcccccccCHHHHHHHhC
Confidence            85  443  578999999999998873

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.53  E-value=7.8e-14  Score=109.49  Aligned_cols=97  Identities=14%  Similarity=0.377  Sum_probs=79.6

Q ss_pred             cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----CCCCCCCCCcEEEEEe-CCC
Q 018164          239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----HPKLQVEEYPTLLFYP-AGD  313 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~~~~~i~~~Pti~~~~-~g~  313 (360)
                      .|++.+ ..+++++|.||++||++|+.+.|.+.++++.+.+  .+.|+.+|++.+.    ...++|.++||+++|. +|+
T Consensus        12 ~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~   88 (142)
T cd02950          12 PPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN   88 (142)
T ss_pred             CHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence            455543 6688999999999999999999999999999976  5778888877653    2468999999999995 565


Q ss_pred             ccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          314 KANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       314 ~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      .+  .++.|..+.+.|.++|.+.+...
T Consensus        89 ~v--~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          89 EE--GQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             EE--EEEeCCCCHHHHHHHHHHHHcCC
Confidence            53  47789999999999999988644

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.52  E-value=7.1e-14  Score=113.37  Aligned_cols=105  Identities=21%  Similarity=0.368  Sum_probs=85.6

Q ss_pred             CCceEEEcC-ccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCc
Q 018164          229 NANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P  304 (360)
                      -+.|..++. .+|.+.+...+  .+++|.||++||++|+.+.|.|..||..+.   .+.|++||++.+.+ ..+++.++|
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~vP  137 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDALP  137 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCCC
Confidence            577889988 99999986544  499999999999999999999999999985   59999999998744 478999999


Q ss_pred             EEEEEeCCCccCce-Eec----CCCCHHHHHHHHHHh
Q 018164          305 TLLFYPAGDKANPI-KVS----ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       305 ti~~~~~g~~~~~~-~~~----g~~~~~~l~~~i~~~  336 (360)
                      |+++|++|..+..+ .+.    ...+.+.|..||.++
T Consensus       138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            99999999876322 111    256778888887653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.52  E-value=8.6e-14  Score=104.87  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=78.2

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      ..+..++|+||++||++|+.+.|.+++++..+ +  .+.+..+|++.+ ++ ..+++.++||+++|++|+....++|.|.
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~   96 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL   96 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence            44667889999999999999999999999876 3  689999999987 44 4789999999999998876656789999


Q ss_pred             CCHHHHHHHHHHhcCC
Q 018164          324 SSSKNIAAFIKEQLKE  339 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~~  339 (360)
                      .+..++.+||...+..
T Consensus        97 ~~~~el~~~i~~i~~~  112 (113)
T cd02975          97 PAGYEFASLIEDIVRV  112 (113)
T ss_pred             CchHHHHHHHHHHHhc
Confidence            9999999999987653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.51  E-value=1.2e-13  Score=102.41  Aligned_cols=100  Identities=14%  Similarity=0.147  Sum_probs=86.2

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      |-+..++..+|+.....+.+++|+||++| ++|+.+.+.|.++|+++++.+.|+.+||+..+   .+|+.++|+++ |++
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~   76 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQGVNSY-PSL   76 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcCCCcc-CEE
Confidence            45778999999998877788999999999 99999999999999999999999999999875   89999999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      +++.++.  ....+.|..+.+.|.+|.
T Consensus        77 ~~~~~g~--~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          77 YVFPSGM--NPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             EEEcCCC--CcccCCCCCCHHHHHhhC
Confidence            6554332  344568999999998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.50  E-value=6.9e-14  Score=102.90  Aligned_cols=91  Identities=25%  Similarity=0.506  Sum_probs=73.5

Q ss_pred             cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCc
Q 018164          238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~  314 (360)
                      ++|++.+... ++.++|.||++||++|+.+.+.+++++..+..  ++.++.+|++.+ ++ .++++.++||+++|++|+.
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~   80 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI   80 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence            4566666444 58999999999999999999999999999844  899999999877 44 4789999999999998865


Q ss_pred             cCceEecCCCCHHHHHHHH
Q 018164          315 ANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i  333 (360)
                      +  .++.| .+.+.|.+.|
T Consensus        81 ~--~~~~g-~~~~~l~~~~   96 (97)
T cd02984          81 V--DRVSG-ADPKELAKKV   96 (97)
T ss_pred             E--EEEeC-CCHHHHHHhh
Confidence            4  34555 4667776665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=7.7e-14  Score=102.62  Aligned_cols=84  Identities=26%  Similarity=0.576  Sum_probs=69.0

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      .+++.++|.|||+|||+|+.+.|.+.+||.++.   ++.|.++|++++ ++ ..+++...||+++|++|+..  ..+.|.
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~--~~~vGa   93 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV--DEVVGA   93 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE--EEEecC
Confidence            346899999999999999999999999999997   489999999984 33 36799999999999999885  356664


Q ss_pred             CCHHHHHHHHHH
Q 018164          324 SSSKNIAAFIKE  335 (360)
Q Consensus       324 ~~~~~l~~~i~~  335 (360)
                       +...+.+.|.+
T Consensus        94 -~~~~l~~~i~~  104 (106)
T KOG0907|consen   94 -NKAELEKKIAK  104 (106)
T ss_pred             -CHHHHHHHHHh
Confidence             33466666654

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.50  E-value=3.5e-12  Score=107.15  Aligned_cols=289  Identities=9%  Similarity=0.148  Sum_probs=193.2

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcC-----CCceEEEec---cHHHHHHcCCCCCCCCCEEEE
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AAD-----NEIQFVETS---NFEVAKVLYPDIKSTDHFLGI   72 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~-----~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~~   72 (360)
                      +.+.++..++++++++|.|+.++|-   .+..+|+++| +..     +.+.+|.+.   ..+++.+|.+.   ++|++.+
T Consensus         2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKv   78 (375)
T KOG0912|consen    2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKV   78 (375)
T ss_pred             ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeee
Confidence            3456778899999999999999995   6788999999 543     455577654   56799999998   9999999


Q ss_pred             EecCCCCccccCCCCChHHHHHHHhhccCCceeecCcccc-cccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCce
Q 018164           73 VKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINS-ASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKI  151 (360)
Q Consensus        73 ~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~-~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i  151 (360)
                      ||++.--.-.|.|..+++.|.+||.......+.++..-+- ..+...++..++.+|... +...+. .++++|.-+++..
T Consensus        79 frnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~k-dspey~-~~~kva~~lr~dc  156 (375)
T KOG0912|consen   79 FRNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSK-DSPEYD-NLRKVASLLRDDC  156 (375)
T ss_pred             eeccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccC-CCchHH-HHHHHHHHHhhcc
Confidence            9997765668999999999999999877776777765443 333332333444444323 222222 5678899898876


Q ss_pred             EEEEEeCCCcccchhHHhhcCCCCCCCce-EEEEeCCCccc-ccCCCCC-CHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          152 MFTAVDIADEDLAKPFLTLFGLEESKNTV-VTAFDNKAISK-FLLESDL-TPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       152 ~f~~vd~~~~~~~~~l~~~~gi~~~~p~~-~~~~~~~~~~~-y~~~~~~-~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                      .|..-=++       +...   ... |.. +.++++..... ..|.|.+ +.+.+.+||++---                
T Consensus       157 ~f~V~~gD-------~~~~---~~~-~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcv----------------  209 (375)
T KOG0912|consen  157 VFLVGFGD-------LLKP---HEP-PGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCV----------------  209 (375)
T ss_pred             EEEeeccc-------cccC---CCC-CCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcch----------------
Confidence            66543222       1111   111 222 24565554332 2457875 78999999998432                


Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCCCC------------
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASANEH------------  295 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~~~------------  295 (360)
                       +.|+.+|-+|-+++. ....|.+|+|+.+......+.  --..+++.+-.+. .+.+...|+..-..            
T Consensus       210 -pLVREiTFeN~EELt-EEGlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DL  285 (375)
T KOG0912|consen  210 -PLVREITFENAEELT-EEGLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDL  285 (375)
T ss_pred             -hhhhhhhhccHHHHh-hcCCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccC
Confidence             258889888988875 778899999998876554432  1244555564433 36777777655422            


Q ss_pred             CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       296 ~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +-+-|+++-.+++|+.++.+   -..|     .|.+||.+.-
T Consensus       286 PviaIDsF~Hmylfp~f~di---~~pG-----kLkqFv~DL~  319 (375)
T KOG0912|consen  286 PVIAIDSFRHMYLFPDFNDI---NIPG-----KLKQFVADLH  319 (375)
T ss_pred             cEEEeeccceeeecCchhhh---cCcc-----HHHHHHHHHh
Confidence            33356778888888886553   2223     8888988754

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.49  E-value=2.4e-13  Score=100.92  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=82.8

Q ss_pred             ccCCHHHHHHHhhhC-CeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEe-----
Q 018164            2 RTNTVNEAEEFLKKY-QTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVK-----   74 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~-~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~-----   74 (360)
                      +|.|.++++.|+..+ +++|||||.+.++..++.|.++| .+++++.|+++++.++++++++.    .|.+++||     
T Consensus         4 ~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~~~~   79 (107)
T cd03068           4 QLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPEKFQ   79 (107)
T ss_pred             EcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcHHHh
Confidence            588999999999988 99999999998888999999999 77899999999999999999885    58899995     


Q ss_pred             -cCCCCccccCCC-CChHH-HHHHHhhc
Q 018164           75 -SEPDRYTGYEET-FIMDK-ILQFLNYN   99 (360)
Q Consensus        75 -~~~~~~~~y~g~-~~~~~-l~~fi~~~   99 (360)
                       ++++....|+|. .+.++ |.+||+.|
T Consensus        80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          80 SKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             hhcCcceeeeeccccchHHHHHHHHhcC
Confidence             566777889887 67666 99999864

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.49  E-value=9.4e-14  Score=114.10  Aligned_cols=102  Identities=17%  Similarity=0.295  Sum_probs=84.9

Q ss_pred             CCCceEEEcCccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcE
Q 018164          228 TNANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT  305 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt  305 (360)
                      .-+.|..++..+|...+...+  ..|+|.||++||++|+.+.+.|++||..+.   .++|+++|++.. ++.+++.++||
T Consensus        80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPT  155 (192)
T cd02988          80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPT  155 (192)
T ss_pred             CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCE
Confidence            357899999999998776543  489999999999999999999999999985   589999999763 56889999999


Q ss_pred             EEEEeCCCccCceEecC-------CCCHHHHHHHHHH
Q 018164          306 LLFYPAGDKANPIKVSA-------RSSSKNIAAFIKE  335 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~  335 (360)
                      +++|++|..+.  ++.|       ..+.+.|..+|.+
T Consensus       156 lliyk~G~~v~--~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         156 ILVYRNGDIVK--QFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEECCEEEE--EEeCchhhCCCCCCHHHHHHHHHh
Confidence            99999998763  3333       5677888877764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.49  E-value=2.2e-13  Score=101.96  Aligned_cols=101  Identities=9%  Similarity=0.063  Sum_probs=85.3

Q ss_pred             CCceeecCccccccc---ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHH-hhcCCCC
Q 018164          101 FPLVTKLTDINSASV---HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL-TLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~---~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~-~~~gi~~  175 (360)
                      .+.|.+++..||.+.   ...+..++|.||++| ++|+.+.+.|.++|+++++.+.|+.|||+...   .+| +.++|.+
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~l~~~~~~I~~   84 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---GKCRKQKHFFY   84 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---HHHHHhcCCcc
Confidence            456889999999975   567778999999999 99999999999999999998999999999775   788 5899999


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      + |+++++.++.  ....|.|..+.+.|..|.
T Consensus        85 ~-PTl~lf~~g~--~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 F-PVIHLYYRSR--GPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             c-CEEEEEECCc--cceEEeCCCCHHHHHhhC
Confidence            9 9996665433  234458999999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.48  E-value=4.3e-12  Score=107.31  Aligned_cols=190  Identities=9%  Similarity=0.006  Sum_probs=137.8

Q ss_pred             HHHHHH-hh--hCCeEEEEEec---CCCC---ccHHHHHHHHhcCCCce--EEEe---ccHHHHHHcCCCCCCCCCEEEE
Q 018164            7 NEAEEF-LK--KYQTFVLGMFK---KFEG---SDYEEFVKTAAADNEIQ--FVET---SNFEVAKVLYPDIKSTDHFLGI   72 (360)
Q Consensus         7 ~~~~~~-~~--~~~~~vv~ff~---~~~~---~~~~~f~~~a~~~~~~~--F~~~---~~~~~~~~~~~~~~~~~p~i~~   72 (360)
                      +++..+ .+  ++.+.++.|+.   ++|+   .....+.++|+.++.+.  +.-+   .+++++++|++.   +.|++++
T Consensus         7 ~~~~~~~~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~---~~Pt~~~   83 (215)
T TIGR02187         7 EILKELFLKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE---RVPTTII   83 (215)
T ss_pred             HHHHHHHHHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC---ccCEEEE
Confidence            444444 33  35666766777   5553   57788999996666655  4333   578999999998   8999999


Q ss_pred             EecCCCCccccCCCCChHHHHHHHhhcc--CCceeecCcccccccccCCCceEE-EEEEec-cchHHHHHHHHHHHHhhc
Q 018164           73 VKSEPDRYTGYEETFIMDKILQFLNYNK--FPLVTKLTDINSASVHSSPIKLQV-YVFAKA-DDLKSLLEPLEDIARNFK  148 (360)
Q Consensus        73 ~~~~~~~~~~y~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~~v-~f~~~~-~~~~~~~~~~~~la~~~~  148 (360)
                      |+.+......|.|..+.+++.+||....  .+.-..+++.+.+.+-....+..| +|+++| ++|+.+.+.+++++.+. 
T Consensus        84 f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-  162 (215)
T TIGR02187        84 LEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-  162 (215)
T ss_pred             EeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence            9975443347888778888999987642  223446666655555454555544 488999 99999999999999885 


Q ss_pred             CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          149 GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       149 ~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      +++.+..+|.+..+   .+++.+||.+. |+++ +...+  ..  +.|..+.+.+.+|+.+
T Consensus       163 ~~i~~~~vD~~~~~---~~~~~~~V~~v-Ptl~-i~~~~--~~--~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       163 DKILGEMIEANENP---DLAEKYGVMSV-PKIV-INKGV--EE--FVGAYPEEQFLEYILS  214 (215)
T ss_pred             CceEEEEEeCCCCH---HHHHHhCCccC-CEEE-EecCC--EE--EECCCCHHHHHHHHHh
Confidence            46999999999876   89999999998 9985 43322  22  4688888899998864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.43  E-value=2.7e-13  Score=99.50  Aligned_cols=93  Identities=12%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             cccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCcc
Q 018164          239 TFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKA  315 (360)
Q Consensus       239 ~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~  315 (360)
                      .|++.+.+ .++.++|.|+++||++|+.+.|.++++|..+++  .+.|+.+|+++. ++. .++|...||+++|++|+..
T Consensus         4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            45555543 488999999999999999999999999999964  499999999998 665 6799999999999999876


Q ss_pred             CceEec-C--------CCCHHHHHHHHH
Q 018164          316 NPIKVS-A--------RSSSKNIAAFIK  334 (360)
Q Consensus       316 ~~~~~~-g--------~~~~~~l~~~i~  334 (360)
                       .+.|. |        ..+.++++..|.
T Consensus        82 -~~d~gt~~~~k~~~~~~~k~~~idi~e  108 (114)
T cd02986          82 -KVDYGSPDHTKFVGSFKTKQDFIDLIE  108 (114)
T ss_pred             -EEecCCCCCcEEEEEcCchhHHHHHHH
Confidence             23332 2        234466666554

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.43  E-value=6.3e-13  Score=99.08  Aligned_cols=101  Identities=21%  Similarity=0.178  Sum_probs=84.9

Q ss_pred             CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      |.+.+++..+|...+ ..+.+++|.||++| ++|+.+.+.|.++++++.+.+.|+.+||+...   .+|+.+||.++ |+
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~-Pt   76 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---SLCQQANIRAY-PT   76 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---HHHHHcCCCcc-cE
Confidence            457789999999865 45568899999999 99999999999999999988999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCC-HHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESDLT-PSNIEEFC  207 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~-~~~i~~fi  207 (360)
                      ++++ ..++...+.+.|..+ .+.|.+|+
T Consensus        77 ~~~~-~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLY-PGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEE-cCCCCCceEccCCCCCHHHHHhhC
Confidence            9655 443344566788886 99998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PTZ00051 thioredoxin; Provisional

Probab=99.43  E-value=4.5e-13  Score=98.74  Aligned_cols=91  Identities=21%  Similarity=0.471  Sum_probs=72.6

Q ss_pred             eEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          232 VQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      |..+++ ++|.+.+ +.++.++|+||++||++|+.+.+.++++++.+.   ++.++.+|++.+ .+ .++++.++||+++
T Consensus         2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   77 (98)
T PTZ00051          2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV   77 (98)
T ss_pred             eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence            444544 4566654 678899999999999999999999999999765   589999999987 44 4789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHH
Q 018164          309 YPAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l  329 (360)
                      |++|+..  .++.|. ..+.|
T Consensus        78 ~~~g~~~--~~~~G~-~~~~~   95 (98)
T PTZ00051         78 FKNGSVV--DTLLGA-NDEAL   95 (98)
T ss_pred             EeCCeEE--EEEeCC-CHHHh
Confidence            9988774  367774 44444

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.42  E-value=1e-12  Score=97.76  Aligned_cols=100  Identities=21%  Similarity=0.324  Sum_probs=86.5

Q ss_pred             eeecCcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      |..+|.++|+..+.. +.+++|+||++| ++|+.+.+.|.++++.+.+++.|+.+|++...   .+|+.++|..+ |+++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~   76 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---ELCKKYGVKSV-PTII   76 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---HHHHHTTCSSS-SEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc---hhhhccCCCCC-CEEE
Confidence            467899999998776 788999999999 99999999999999999988999999999775   89999999999 9996


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      .+.++....  .+.|..+.+.|.+||++
T Consensus        77 ~~~~g~~~~--~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   77 FFKNGKEVK--RYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             EEETTEEEE--EEESSSSHHHHHHHHHH
T ss_pred             EEECCcEEE--EEECCCCHHHHHHHHHc
Confidence            554443333  44788999999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.42  E-value=1e-12  Score=100.15  Aligned_cols=96  Identities=10%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC---CC----------C-
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP----------K-  297 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---~~----------~-  297 (360)
                      +..++...+.+.+ .+++.++|+|+++||++|+.+.|.+.++++..    ++.++.+|++.+.   +.          . 
T Consensus         8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            4556667787776 55778999999999999999999999999983    4567888877542   11          1 


Q ss_pred             ---CCCCCCcEEEEEeCCCccCceEecC-CCCHHHHHHHHH
Q 018164          298 ---LQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIK  334 (360)
Q Consensus       298 ---~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~  334 (360)
                         .++.++||+++|++|+.+.  +..| ..+.++|.+|+.
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~--~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVS--VRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEE--EEeCCCCCHHHHHHHhh
Confidence               2466799999999998864  5667 667999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.41  E-value=1.2e-12  Score=95.00  Aligned_cols=90  Identities=27%  Similarity=0.623  Sum_probs=74.9

Q ss_pred             cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccC
Q 018164          239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~  316 (360)
                      +|...+ ...++++|+||++||+.|..+.+.++++++. .+  ++.++.+|++.+ .+ ..+++.++|++++|++|... 
T Consensus         2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~-   76 (93)
T cd02947           2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV-   76 (93)
T ss_pred             chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEE-
Confidence            455555 3348999999999999999999999999988 33  799999999986 44 47899999999999998753 


Q ss_pred             ceEecCCCCHHHHHHHHH
Q 018164          317 PIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       317 ~~~~~g~~~~~~l~~~i~  334 (360)
                       ..+.|..+.+.|.+||.
T Consensus        77 -~~~~g~~~~~~l~~~i~   93 (93)
T cd02947          77 -DRVVGADPKEELEEFLE   93 (93)
T ss_pred             -EEEecCCCHHHHHHHhC
Confidence             47788888899988873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.40  E-value=2.1e-11  Score=100.82  Aligned_cols=172  Identities=20%  Similarity=0.333  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcC
Q 018164          135 SLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG  213 (360)
Q Consensus       135 ~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g  213 (360)
                      .....|.++|+.+.+.+.|+.+..      ..+++.+|+..  |.++++.. .......|.|. .+.+.|.+||....- 
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~~~~~--p~i~~~k~-~~~~~~~y~~~~~~~~~l~~fI~~~~~-   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTFN------EELAKKYGIKE--PTIVVYKK-FDEKPVVYDGDKFTPEELKKFIKKNSF-   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS--SEEEEEEC-TTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEcH------HHHHHHhCCCC--CcEEEecc-CCCCceecccccCCHHHHHHHHHHhcc-
Confidence            356689999999998899999862      27889999876  78865544 34455666787 899999999999643 


Q ss_pred             ccCCccccCCCCCCCCCceEEEcCccccccccccCc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          214 TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       214 ~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                                      +.|..++..++..+. ..+. .+++.|+.........+...++.+|+.+++  ++.|+.+|++.
T Consensus        77 ----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~  137 (184)
T PF13848_consen   77 ----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD  137 (184)
T ss_dssp             ----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred             ----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence                            248899999999986 4454 478888777778888899999999999987  79999999996


Q ss_pred             C-CC-CCCCCC--CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          293 N-EH-PKLQVE--EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       293 ~-~~-~~~~i~--~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      + .. ..++++  .+|+++++..........+.|..+.++|.+||++
T Consensus       138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  138 FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            5 33 356776  8999999974333212334799999999999974

...

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.39  E-value=2.2e-12  Score=96.78  Aligned_cols=100  Identities=20%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc------CceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK------GKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~------~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      .|.+++.++|+..+..+.+++|.||++| .+|+++.+.|+++|+.++      +++.|+.+||+...   .+|+.|||++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYRINK   78 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCCCCc
Confidence            4678899999998888888899999999 999999999999999864      25899999999875   8999999999


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      + |+++++ ..+......+.|..+.+.|.+||
T Consensus        79 ~-Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 Y-PTLKLF-RNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             C-CEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence            9 999655 44432345568999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.36  E-value=2.7e-12  Score=95.44  Aligned_cols=84  Identities=20%  Similarity=0.373  Sum_probs=72.4

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCC--CCcEEEEEeC--CCccCceEec
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE--EYPTLLFYPA--GDKANPIKVS  321 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~--~~Pti~~~~~--g~~~~~~~~~  321 (360)
                      ++++++.|+++||++|..+.+.++++|+.+++  ++.|+++|++.+ .+ ..+++.  ++|++++++.  |.+.   .+.
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~---~~~   86 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY---LMP   86 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc---CCC
Confidence            68999999999999999999999999999997  799999999997 44 367998  9999999988  4442   344


Q ss_pred             -CCCCHHHHHHHHHHh
Q 018164          322 -ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       322 -g~~~~~~l~~~i~~~  336 (360)
                       |..+.++|.+||.+.
T Consensus        87 ~~~~~~~~l~~fi~~~  102 (103)
T cd02982          87 EEELTAESLEEFVEDF  102 (103)
T ss_pred             ccccCHHHHHHHHHhh
Confidence             456999999999875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=4.5e-12  Score=103.65  Aligned_cols=104  Identities=19%  Similarity=0.403  Sum_probs=84.6

Q ss_pred             eEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          232 VQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      |..+.+ .+|...+.. ..+.++|.|+|.||++|+.+.|+|..++.+|.+   .+|.++|++.- .. ..++|...||++
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi   79 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI   79 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence            444543 567776633 356999999999999999999999999999964   78999999886 44 478999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +|++|.++.  .+.| .+...|...|.+++.+.+
T Consensus        80 ff~ng~kid--~~qG-Ad~~gLe~kv~~~~stsa  110 (288)
T KOG0908|consen   80 FFRNGVKID--QIQG-ADASGLEEKVAKYASTSA  110 (288)
T ss_pred             EEecCeEee--eecC-CCHHHHHHHHHHHhccCc
Confidence            999998863  4554 588899999999987654

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.35  E-value=4.2e-12  Score=97.96  Aligned_cols=90  Identities=18%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             ccC-ccEEEEEeCCCChhhHHHHHHHH---HHHHHhcCCCCEEEEEEeCCCC--------------CC-CCCCCCCCcEE
Q 018164          246 NSH-KDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN--------------EH-PKLQVEEYPTL  306 (360)
Q Consensus       246 ~~~-~~~~v~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~--------------~~-~~~~i~~~Pti  306 (360)
                      ... ++++|.||++||++|+.+.+.+.   .+...+++  ++.+..+|++.+              .+ ..+++.++||+
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   88 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV   88 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence            445 89999999999999999999885   56666764  788999998764              22 35799999999


Q ss_pred             EEEeCC-CccCceEecCCCCHHHHHHHHHHhcC
Q 018164          307 LFYPAG-DKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       307 ~~~~~g-~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|..+ ++. ..++.|..+.+.+.++|+..++
T Consensus        89 ~~~~~~gg~~-~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          89 IFLDPEGGKE-IARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             EEEcCCCCce-eEEecCCCCHHHHHHHHHHHHh
Confidence            999875 343 4578899999999999988764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.34  E-value=6.6e-12  Score=93.35  Aligned_cols=96  Identities=28%  Similarity=0.480  Sum_probs=77.4

Q ss_pred             cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC--CCCCceEEEEeCC
Q 018164          111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDNK  187 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~--~~~p~~~~~~~~~  187 (360)
                      ++..+...+.+++++|+++| ++|+.+.+.++++|+++++++.|+++|+++++   .+++.+|+.  +. |++ +++...
T Consensus         4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~i~~~~~-P~~-~~~~~~   78 (103)
T cd02982           4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFGLKEEDL-PVI-AIINLS   78 (103)
T ss_pred             HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcCCChhhC-CEE-EEEecc
Confidence            33434333678888899888 79999999999999999999999999999875   899999999  55 777 455554


Q ss_pred             CcccccCCCC-CCHHHHHHHHHHHh
Q 018164          188 AISKFLLESD-LTPSNIEEFCSRLL  211 (360)
Q Consensus       188 ~~~~y~~~~~-~~~~~i~~fi~~~~  211 (360)
                      ++.+|.+.+. .+.++|.+|+++++
T Consensus        79 ~~~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          79 DGKKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             cccccCCCccccCHHHHHHHHHhhC
Confidence            4567776554 59999999999863

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.33  E-value=7.6e-12  Score=93.03  Aligned_cols=104  Identities=11%  Similarity=0.027  Sum_probs=77.3

Q ss_pred             eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhc---CceEEEEEeCCCccc--chhHHhhcCCC--CC
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDL--AKPFLTLFGLE--ES  176 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~--~~~l~~~~gi~--~~  176 (360)
                      +..|++.||++++.....++|.||++|+.|.+ ++.++++|.++.   ..|.++.|||+.++-  +++||++|||+  ++
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            56799999999998888899999995544544 366666766663   249999999953210  24899999999  88


Q ss_pred             CCceEEEEeCCCcccccCCCC-CCHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSR  209 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~  209 (360)
                       |++.++.++.......|.|. ++.+.|.+|+..
T Consensus        82 -PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          82 -PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             -CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence             99964444322234456896 999999999976

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.32  E-value=1.2e-11  Score=92.03  Aligned_cols=99  Identities=22%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             eeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      |.+++..++...+. .+.+++++||++| ++|+.+.+.|.++++++.+++.|+.+|++...   .+++.+||.++ |+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~i~~~-P~~~   77 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYGVRGF-PTIK   77 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCCCCcc-CEEE
Confidence            46788888888654 4445889999999 99999999999999999999999999999875   89999999998 9985


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                       ++..+....+.|.|..+.+.|.+|+
T Consensus        78 -~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          78 -VFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             -EECCCCcceeecCCCCCHHHHHHHh
Confidence             4554444566778999999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.32  E-value=1.2e-11  Score=93.01  Aligned_cols=102  Identities=21%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +.+++..+|...+ +.+.++++.||++| ++|+++.+.|.++++.+.+.+.|+.+||+... +..+|+.|+|.++ |+++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~-Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF-PTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC-CEEE
Confidence            5688999998865 44566899999999 99999999999999999988999999999722 2389999999999 9996


Q ss_pred             EEEeCC---CcccccCCCCCCHHHHHHHH
Q 018164          182 TAFDNK---AISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       182 ~~~~~~---~~~~y~~~~~~~~~~i~~fi  207 (360)
                      ++.+++   ....+.|.|..+.+.|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            554443   12345668999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PTZ00062 glutaredoxin; Provisional

Probab=99.28  E-value=1.9e-11  Score=100.80  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCc
Q 018164          238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANP  317 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~  317 (360)
                      +.|.+.+..+.+.++++|+|+||+.|+.+.+.+.+|++.+.   ++.|+.||++      ++|.++||+++|++|+.++ 
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i~-   76 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLIN-   76 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEEe-
Confidence            45666664445889999999999999999999999999985   5999999987      8999999999999998865 


Q ss_pred             eEecCCCCHHHHHHHHHHhcCCCC
Q 018164          318 IKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       318 ~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                       ++.|. ++..|.++|.++.+...
T Consensus        77 -r~~G~-~~~~~~~~~~~~~~~~~   98 (204)
T PTZ00062         77 -SLEGC-NTSTLVSFIRGWAQKGS   98 (204)
T ss_pred             -eeeCC-CHHHHHHHHHHHcCCCC
Confidence             66664 58888888888877544

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.28  E-value=2.4e-11  Score=86.27  Aligned_cols=78  Identities=17%  Similarity=0.378  Sum_probs=66.5

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHH
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN  328 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~  328 (360)
                      .+..||++||++|+.+.+.+++++..++.  .+.+..+|++.+ +. ..+++.++|++++  +|.    .++.|..+.+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~----~~~~G~~~~~~   73 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD----VEFIGAPTKEE   73 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE----EEEecCCCHHH
Confidence            46789999999999999999999999875  689999999877 33 4789999999986  553    27889999999


Q ss_pred             HHHHHHHh
Q 018164          329 IAAFIKEQ  336 (360)
Q Consensus       329 l~~~i~~~  336 (360)
                      |.++|.+.
T Consensus        74 l~~~l~~~   81 (82)
T TIGR00411        74 LVEAIKKR   81 (82)
T ss_pred             HHHHHHhh
Confidence            99999864

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.27  E-value=2.1e-11  Score=91.87  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=81.7

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec--c--chH--HHHHHHHHHHHhh--cCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA--D--DLK--SLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~--~~~--~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      .|..+|.+||++.+..+...+|.||.+|  +  +|+  .+.|.+.++|.++  .+++.|+.||++.+.   .+++.|||.
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~I~   86 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLGLD   86 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcCCc
Confidence            4677899999987766655566666655  4  499  7788899999999  788999999999886   999999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +. ||++++.+ +..  ..+.|.++.+.|.+|+.+.+
T Consensus        87 ~i-PTl~lfk~-G~~--v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          87 EE-DSIYVFKD-DEV--IEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cc-cEEEEEEC-CEE--EEeeCCCCHHHHHHHHHHHh
Confidence            99 99965544 332  23689999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.3e-11  Score=92.85  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=90.1

Q ss_pred             CCceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      ...+...+...+++ +.++..|++|.|+++| ++|+.+.|.+.+++.+|.|++.|+.+|.+++.   +++..|+|... |
T Consensus        42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~---ela~~Y~I~av-P  117 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP---ELAEDYEISAV-P  117 (150)
T ss_pred             cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc---chHhhcceeee-e
Confidence            44666777777776 6678889999999999 99999999999999999999999999999987   99999999988 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++++.++....++  .|-.+.+.|.+||++++.
T Consensus       118 tvlvfknGe~~d~~--vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  118 TVLVFKNGEKVDRF--VGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEEECCEEeeee--cccCCHHHHHHHHHHHhc
Confidence            99665555443344  688899999999999873

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.25  E-value=3.2e-11  Score=90.53  Aligned_cols=100  Identities=14%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             eeecCccccccccc---CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHh-hcCCCCCC
Q 018164          104 VTKLTDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLT-LFGLEESK  177 (360)
Q Consensus       104 v~~l~~~~~~~~~~---~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~-~~gi~~~~  177 (360)
                      |.+++.++|+.+..   .+.++++.||++| ++|+++.+.|.+++..+++. +.++.+||+...  ..+|. .++++.+ 
T Consensus         3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~-   79 (109)
T cd02993           3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSF-   79 (109)
T ss_pred             ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcC-
Confidence            67889999988763   4678999999999 99999999999999999974 999999999632  37776 5999999 


Q ss_pred             CceEEEEeCCCcccccCCCC-CCHHHHHHHH
Q 018164          178 NTVVTAFDNKAISKFLLESD-LTPSNIEEFC  207 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi  207 (360)
                      |+++ ++..+....+.|.|. ++.+.|..|+
T Consensus        80 Pti~-~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          80 PTIL-FFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             CEEE-EEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9995 455544456667885 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.25  E-value=2e-11  Score=91.63  Aligned_cols=91  Identities=16%  Similarity=0.300  Sum_probs=68.2

Q ss_pred             cccccccccc-CccEEEEEeC-------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------CCC-CCCC
Q 018164          238 KTFDDLVLNS-HKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EHP-KLQV  300 (360)
Q Consensus       238 ~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------~~~-~~~i  300 (360)
                      ++|.+.+... +++++|.|||       +||++|+.+.|.+++++..+.+  ++.|++||++.+        ++. .++|
T Consensus        10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~I   87 (119)
T cd02952          10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPKL   87 (119)
T ss_pred             HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccCc
Confidence            5666666543 5799999999       9999999999999999999975  689999999763        332 5688


Q ss_pred             C-CCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          301 E-EYPTLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       301 ~-~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      . ++||+++|+.|++.   .-..-.+.+.+..|+
T Consensus        88 ~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~  118 (119)
T cd02952          88 TTGVPTLLRWKTPQRL---VEDECLQADLVEMFF  118 (119)
T ss_pred             ccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence            7 99999999777553   111123555555543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.25  E-value=3.6e-11  Score=89.11  Aligned_cols=98  Identities=24%  Similarity=0.276  Sum_probs=83.0

Q ss_pred             cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      ++.++|...+..+.+++++|+++| ..|+.+.+.|.+++..+++  .+.|+.+||+...   .+++.|||.++ |++++ 
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~i~~~-P~~~~-   75 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---DLASRFGVSGF-PTIKF-   75 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---HHHHhCCCCcC-CEEEE-
Confidence            456778887777788899999999 9999999999999999997  6999999999875   89999999998 98854 


Q ss_pred             EeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          184 FDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       184 ~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +..+.. .+.+.|..+.+.|..||++.
T Consensus        76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        76 FPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence            444433 66678999999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.24  E-value=4.3e-11  Score=89.28  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=80.7

Q ss_pred             eeecCcccccccccCCCceEEEEEEe----c-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAK----A-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~----~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      |+++|.+|...++..+  .++.+|+-    . ...+.+...++++|++|+ +++.|+++|.+.+.   ..++.||++...
T Consensus         1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~   75 (111)
T cd03073           1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG   75 (111)
T ss_pred             CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence            5678899998886444  44554433    3 567889999999999999 79999999999875   689999999643


Q ss_pred             --CceEEEEeCCCcccccCCCCC-CHHHHHHHHHHHh
Q 018164          178 --NTVVTAFDNKAISKFLLESDL-TPSNIEEFCSRLL  211 (360)
Q Consensus       178 --p~~~~~~~~~~~~~y~~~~~~-~~~~i~~fi~~~~  211 (360)
                        .|++++.+..+ .+|++.+.. +.++|.+|+++++
T Consensus        76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence              45556776544 899888889 9999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.24  E-value=5.5e-11  Score=88.01  Aligned_cols=98  Identities=18%  Similarity=0.127  Sum_probs=81.8

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .|.+++.++|+.+....  ++|.||++| ++|+.+.+.|.+++..+++ .+.|+.+||+..+   .+++.++|.++ |++
T Consensus         2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~i~~~-Pt~   75 (101)
T cd02994           2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRFFVTAL-PTI   75 (101)
T ss_pred             ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHcCCccc-CEE
Confidence            36789999999877543  789999999 9999999999999998874 5999999999875   89999999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      +++ ..+.  ...+.|..+.+.|.+|+++
T Consensus        76 ~~~-~~g~--~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          76 YHA-KDGV--FRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EEe-CCCC--EEEecCCCCHHHHHHHHhC
Confidence            654 3332  3456899999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.24  E-value=1.8e-10  Score=96.87  Aligned_cols=182  Identities=16%  Similarity=0.207  Sum_probs=125.8

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL  194 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~  194 (360)
                      ...|++-||+|| .+|+++.|.|.++.-+++.   -|.++.+||+.++   .++..|||++| |++. ++.++  ..|.|
T Consensus        43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~---aiAnefgiqGY-PTIk-~~kgd--~a~dY  115 (468)
T KOG4277|consen   43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP---AIANEFGIQGY-PTIK-FFKGD--HAIDY  115 (468)
T ss_pred             CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch---hhHhhhccCCC-ceEE-EecCC--eeeec
Confidence            346899999999 9999999999999998884   3999999999997   89999999999 9994 55543  46677


Q ss_pred             CCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHH
Q 018164          195 ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA  274 (360)
Q Consensus       195 ~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la  274 (360)
                      .|+++.+.|..|.....+.-+.|      +|+++         ..|.. +...+++.+|+|-+.. ++   +...+...|
T Consensus       116 RG~R~Kd~iieFAhR~a~aiI~p------i~enQ---------~~feh-lq~Rhq~ffVf~Gtge-~P---L~d~fidAA  175 (468)
T KOG4277|consen  116 RGGREKDAIIEFAHRCAAAIIEP------INENQ---------IEFEH-LQARHQPFFVFFGTGE-GP---LFDAFIDAA  175 (468)
T ss_pred             CCCccHHHHHHHHHhcccceeee------cChhH---------HHHHH-HhhccCceEEEEeCCC-Cc---HHHHHHHHh
Confidence            99999999999999876532222      22210         12333 3456889999887543 11   222333333


Q ss_pred             HHhcCCCCEEEEEEe-CCCCCCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          275 KHFKGLDNLVIAKID-ASANEHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       275 ~~~~~~~~~~~~~id-~~~~~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                         ..  .+.+++.= ++..-.+ .......|.+.+|++...  .+..  .-+.+.|..||++-
T Consensus       176 ---Se--~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf--~i~d--e~dd~dLseWinRE  230 (468)
T KOG4277|consen  176 ---SE--KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETF--EIED--EGDDEDLSEWINRE  230 (468)
T ss_pred             ---hh--heeeeeeeccccccCCcccchhhccceEEEcccee--EEEe--cCchhHHHHHHhHh
Confidence               22  45555553 3333233 346778899999987633  2233  44678899999864

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.24  E-value=3.7e-11  Score=89.12  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +..++.++|......+ ++++.||++| .+|+.+.+.|.++++++++   ++.|+.+||+...   .+|+.+++... |+
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt   76 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQVRGY-PT   76 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcCCCcC-CE
Confidence            5678888999877665 5889999999 9999999999999999987   7999999999875   89999999998 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      ++++. .+. ....+.|..+.+.|.+||
T Consensus        77 ~~~~~-~g~-~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          77 LLLFK-DGE-KVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEe-CCC-eeeEeeCCCCHHHHHhhC
Confidence            86554 332 344568999999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.22  E-value=7.7e-11  Score=87.68  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             eeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      |..++..+|.+... .+.+++|+||++| +.|+.+.+.|.++++.+++  ++.|+.+||+..    .++..+++.++ |+
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~-Pt   76 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF-PT   76 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC-CE
Confidence            67889999988654 4578889999999 9999999999999999986  599999999975    57788899887 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      ++++.++.......+.|..+.+.|.+||
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            8655444323455668999999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.21  E-value=3.1e-11  Score=91.35  Aligned_cols=94  Identities=16%  Similarity=0.310  Sum_probs=64.9

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCC--CcEEEEEe-CCCccC-ceE
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEE--YPTLLFYP-AGDKAN-PIK  319 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~--~Pti~~~~-~g~~~~-~~~  319 (360)
                      ..++++++|.|||+||++|+.+.|.+.+.+.......++..+.+|.+.... ..+++.+  +||+++|. +|+... .+.
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN   95 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence            356889999999999999999999999987755432245554444433232 4567765  99999995 665543 224


Q ss_pred             ecCCCCHHHHHHHHHHhcC
Q 018164          320 VSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       320 ~~g~~~~~~l~~~i~~~~~  338 (360)
                      ..|..+.+.+.+.|....+
T Consensus        96 ~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          96 KKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             CCCCccccccCCCHHHHHh
Confidence            5577777777666665544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.19  E-value=1.4e-10  Score=86.42  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             eeecCcccccccccCC-CceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCC-cccchhHHhhcCCCCCCC
Q 018164          104 VTKLTDINSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIAD-EDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~-~~~~~~l~~~~gi~~~~p  178 (360)
                      +.+++++++....... .+.+++|+++| ..|+++.+.|.++++.++  +++.|+.+||.. .+   .+|+.++|.++ |
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~i~~~-P   77 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYGVSGF-P   77 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCCCCCc-C
Confidence            4578888888876544 47889999999 999999999999999997  469999999998 65   89999999998 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      +++++ ..+....+.+.|..+.+.|.+|+
T Consensus        78 ~~~~~-~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          78 TLKFF-PKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEEE-eCCCCCccccCCccCHHHHHhhC
Confidence            98544 44434566678999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.19  E-value=9.8e-11  Score=98.23  Aligned_cols=105  Identities=15%  Similarity=0.230  Sum_probs=87.3

Q ss_pred             CceeecCcccccccccC-----CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          102 PLVTKLTDINSASVHSS-----PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~-----~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ..+.++++.+|+.....     +.+++|.||++| ++|+++.+.|.++++++++.+.|+.+||+...   .+++.|+|.+
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~l~~~~~I~~  106 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---NLAKRFAIKG  106 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---HHHHHcCCCc
Confidence            45888999999986642     468899999999 99999999999999999999999999999875   8999999999


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      + |++++ +..+....| ..|..+.+.|.+|+.+.+.
T Consensus       107 ~-PTl~~-f~~G~~v~~-~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        107 Y-PTLLL-FDKGKMYQY-EGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             C-CEEEE-EECCEEEEe-eCCCCCHHHHHHHHHHHHH
Confidence            9 99964 444322222 3577999999999998764

>PTZ00062 glutaredoxin; Provisional

Probab=99.18  E-value=2.2e-10  Score=94.43  Aligned_cols=158  Identities=16%  Similarity=0.245  Sum_probs=105.0

Q ss_pred             cccccccCC-CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC
Q 018164          111 NSASVHSSP-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA  188 (360)
Q Consensus       111 ~~~~~~~~~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~  188 (360)
                      .+..+...+ ...+++|.++| ++|+.+.+.+.+++++|.+ +.|+.||++           ++|.+. |+++.+.++..
T Consensus         8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v-Ptfv~~~~g~~   74 (204)
T PTZ00062          8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY-GVFEFYQNSQL   74 (204)
T ss_pred             HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc-eEEEEEECCEE
Confidence            344444433 45667777999 9999999999999999975 999999865           788888 99965554443


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEe----CCCChhhH
Q 018164          189 ISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVY----TPWCVTCE  264 (360)
Q Consensus       189 ~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~----~~~c~~c~  264 (360)
                      ..++  . ..++..|..++..+.....     +        .   . ..+-..+++  +..+++|+.-    .|||++|+
T Consensus        75 i~r~--~-G~~~~~~~~~~~~~~~~~~-----~--------~---~-~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C~  132 (204)
T PTZ00062         75 INSL--E-GCNTSTLVSFIRGWAQKGS-----S--------E---D-TVEKIERLI--RNHKILLFMKGSKTFPFCRFSN  132 (204)
T ss_pred             Eeee--e-CCCHHHHHHHHHHHcCCCC-----H--------H---H-HHHHHHHHH--hcCCEEEEEccCCCCCCChhHH
Confidence            3343  3 4678999999988764210     0        0   0 111223332  3456666554    37999999


Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCC
Q 018164          265 TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGD  313 (360)
Q Consensus       265 ~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~  313 (360)
                      ++...|.+.        ++.+..+|+..+ ++.    ++ +..++|.+++  +|+
T Consensus       133 ~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~  177 (204)
T PTZ00062        133 AVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGE  177 (204)
T ss_pred             HHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            988777754        466778888766 332    11 5567788754  453

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=2.2e-11  Score=111.27  Aligned_cols=110  Identities=24%  Similarity=0.430  Sum_probs=88.5

Q ss_pred             CCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCC---CCC-CCCCCC
Q 018164          228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN---EHP-KLQVEE  302 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~---~~~-~~~i~~  302 (360)
                      ..++|..|+..+|+..+..+.+-.+|.||++|||+|..+.|.|+++|+.+.. ..-+.++.|||...   .++ +++|++
T Consensus        37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~  116 (606)
T KOG1731|consen   37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG  116 (606)
T ss_pred             CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence            4578999999999999998888999999999999999999999999999754 22589999999875   333 789999


Q ss_pred             CcEEEEEeCCCccC--ceEecCCCCHHHHHHHHHHhc
Q 018164          303 YPTLLFYPAGDKAN--PIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       303 ~Pti~~~~~g~~~~--~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ||++.+|+.+....  .-.+.|.....++...+.+-+
T Consensus       117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l  153 (606)
T KOG1731|consen  117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL  153 (606)
T ss_pred             CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence            99999998874421  124556666677777665544

>PRK09381 trxA thioredoxin; Provisional

Probab=99.17  E-value=2.7e-10  Score=85.53  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=86.4

Q ss_pred             CceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          102 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       102 p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      ..+.+++.++|.. +...+.++++.||++| +.|..+.+.|++++.++.+++.|+.+|++...   .+++.+++... |+
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt   78 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-PT   78 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---hHHHhCCCCcC-CE
Confidence            4567788888876 4556778899999999 99999999999999999988999999999875   88999999998 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++++ ..+ ...+.+.|..+.+.|..|+...+
T Consensus        79 ~~~~-~~G-~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         79 LLLF-KNG-EVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEE-eCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence            8544 433 33445678889999999998865

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.17  E-value=7e-10  Score=85.36  Aligned_cols=110  Identities=19%  Similarity=0.246  Sum_probs=83.2

Q ss_pred             CceeecCcccc-cccccCCCceEEEEEEec------cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCC
Q 018164          102 PLVTKLTDINS-ASVHSSPIKLQVYVFAKA------DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus       102 p~v~~l~~~~~-~~~~~~~~~~~v~f~~~~------~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      |-|.+++..+. ...... ..+-++.+-+.      ...+++...++++|++|+++ +.|+++|...+.   .+.+.||+
T Consensus         2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~---~~~~~fgl   77 (130)
T cd02983           2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL---DLEEALNI   77 (130)
T ss_pred             CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH---HHHHHcCC
Confidence            45667776655 334433 34545555553      34567889999999999999 999999999885   79999999


Q ss_pred             CCCC-CceEEEEeCCCccccc-CCCCCCHHHHHHHHHHHhcCccCC
Q 018164          174 EESK-NTVVTAFDNKAISKFL-LESDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       174 ~~~~-p~~~~~~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      ++.. |.+ ++.+...+ +|. +.|.++.++|.+|++++++|++..
T Consensus        78 ~~~~~P~v-~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~  121 (130)
T cd02983          78 GGFGYPAM-VAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT  121 (130)
T ss_pred             CccCCCEE-EEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence            8543 555 56666544 887 789999999999999999999854

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2e-10  Score=97.46  Aligned_cols=107  Identities=23%  Similarity=0.333  Sum_probs=92.6

Q ss_pred             CCceeecCcccccccc---cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          101 FPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~---~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      .|.|.+.|..||+..+   +...|++|.|+++| ++|+++.+.+.+++..|+|++.++.|||+..+   .+...|||++.
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~vAaqfgiqsI   98 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---MVAAQFGVQSI   98 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---hHHHHhCcCcC
Confidence            3458899999998743   23458999999999 99999999999999999999999999999887   99999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       |+++++.++....-|  .|....+.|.+|+..++..
T Consensus        99 -PtV~af~dGqpVdgF--~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          99 -PTVYAFKDGQPVDGF--QGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             -CeEEEeeCCcCcccc--CCCCcHHHHHHHHHHhcCh
Confidence             999888777655555  7888889999999998754

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.13  E-value=2.7e-10  Score=84.70  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=81.7

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      +.++++.++...+..+.+++|.||++| ..|+++.+.+.++++.+.  +.+.|+.+||+... +..+++.+||.++ |++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~-Pt~   79 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF-PTF   79 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc-cEE
Confidence            567888888888888888999999999 999999999999999998  66899999999721 1389999999998 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      +++ ..+. ....+.|..+.+.+.+|+
T Consensus        80 ~~~-~~g~-~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          80 KYF-ENGK-FVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEE-eCCC-eeEEeCCCCCHHHHHhhC
Confidence            544 4432 345568999999998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=99.11  E-value=4.2e-10  Score=88.11  Aligned_cols=101  Identities=16%  Similarity=0.235  Sum_probs=84.6

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      +..++..+++.+...+.++++.||++| +.|+.+.+.|.++++++.+.+.|+.+|++..+   .+++.++|.+. |++++
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~V~~~-Ptlii  112 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFRIRSI-PTIMI  112 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcCCCcc-CEEEE
Confidence            445777788887777888999999999 99999999999999999988999999999875   89999999999 99854


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                       +.++ .....+.|..+.+.|.+|++..
T Consensus       113 -~~~G-~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        113 -FKNG-QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             -EECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence             4433 2333457889999999999874

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.11  E-value=4.5e-10  Score=82.25  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             cccccc-cC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164          111 NSASVH-SS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK  187 (360)
Q Consensus       111 ~~~~~~-~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~  187 (360)
                      +|.+.+ +. +.++++.||++| .+|+.+.+.+.+++..+.+.+.|+.+|++...   .+++.|+|.+. |+++++. .+
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~i~~~-Pt~~~~~-~g   76 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---QIAQQFGVQAL-PTVYLFA-AG   76 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---HHHHHcCCCCC-CEEEEEe-CC
Confidence            344434 33 568899999999 99999999999999999988999999999875   89999999999 9996554 33


Q ss_pred             CcccccCCCCCCHHHHHHHHH
Q 018164          188 AISKFLLESDLTPSNIEEFCS  208 (360)
Q Consensus       188 ~~~~y~~~~~~~~~~i~~fi~  208 (360)
                       .....+.|..+.+.|..|++
T Consensus        77 -~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          77 -QPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             -EEeeeecCCCCHHHHHHHhC
Confidence             22234578889999998873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.09  E-value=2.4e-10  Score=79.42  Aligned_cols=73  Identities=19%  Similarity=0.380  Sum_probs=58.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCC-CCHHHHH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIA  330 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~-~~~~~l~  330 (360)
                      -|.||++||++|+.+.|.++++++.+..  .+.+..+| +.....++++.+.|++++  +|..    .+.|. .+.+.+.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~----~~~G~~~~~~~l~   72 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL----VIMGKIPSKEEIK   72 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE----EEEeccCCHHHHH
Confidence            3789999999999999999999999975  68888887 222445789999999999  6644    37774 5668887


Q ss_pred             HHH
Q 018164          331 AFI  333 (360)
Q Consensus       331 ~~i  333 (360)
                      ++|
T Consensus        73 ~~l   75 (76)
T TIGR00412        73 EIL   75 (76)
T ss_pred             HHh
Confidence            776

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.08  E-value=5.2e-10  Score=82.46  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             ecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhh--cCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          106 KLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      .++..++......+.+++++|+++| +.|+++.+.|.+++..+  .+.+.|+.+||+...   .+++.+||..+ |++++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~i~~~-Pt~~~   77 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---DLCSEYGVRGY-PTIKL   77 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---HHHHhCCCCCC-CEEEE
Confidence            4677788887777778999999999 99999999999999999  578999999999865   89999999998 99865


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHH
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      + ..++.....+.|..+.+.|.+|+
T Consensus        78 ~-~~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          78 F-PNGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             E-cCCCcccccCCCCcCHHHHHhhC
Confidence            5 44324455568888999988874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.08  E-value=5.3e-10  Score=82.24  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=69.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE  195 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~  195 (360)
                      .+++++|.||++| ++|+.+.+.|.++++++++ +.|+.+|++ .+.   .+++.|+|.++ |++++ ++.+  ....+.
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~V~~~-PT~~l-f~~g--~~~~~~   88 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYGVVGF-PTILL-FNST--PRVRYN   88 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcCCeec-CEEEE-EcCC--ceeEec
Confidence            5678899999999 9999999999999999986 889999998 564   89999999999 99954 4444  445568


Q ss_pred             CCCCHHHHHHHH
Q 018164          196 SDLTPSNIEEFC  207 (360)
Q Consensus       196 ~~~~~~~i~~fi  207 (360)
                      |..+.+.|.+||
T Consensus        89 G~~~~~~l~~f~  100 (100)
T cd02999          89 GTRTLDSLAAFY  100 (100)
T ss_pred             CCCCHHHHHhhC
Confidence            999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.07  E-value=4.9e-10  Score=84.27  Aligned_cols=86  Identities=10%  Similarity=0.165  Sum_probs=72.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE  195 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~  195 (360)
                      .+.+++|.||++| +.|+.+.+.|.++++++++ ++.|+.+|++...   .+++.+||.++ |+++++. .+. ....+.
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~~V~~~-Pt~~i~~-~g~-~~~~~~   96 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKLGAHSV-PAIVGII-NGQ-VTFYHD   96 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHcCCccC-CEEEEEE-CCE-EEEEec
Confidence            5678999999999 9999999999999999986 4999999999775   89999999999 9996554 332 333347


Q ss_pred             CCCCHHHHHHHHHH
Q 018164          196 SDLTPSNIEEFCSR  209 (360)
Q Consensus       196 ~~~~~~~i~~fi~~  209 (360)
                      |..+.+.|.+|+++
T Consensus        97 G~~~~~~l~~~i~~  110 (111)
T cd02963          97 SSFTKQHVVDFVRK  110 (111)
T ss_pred             CCCCHHHHHHHHhc
Confidence            88999999999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01068 thioredoxin thioredoxin

Probab=99.02  E-value=1.8e-09  Score=79.67  Aligned_cols=97  Identities=18%  Similarity=0.255  Sum_probs=77.1

Q ss_pred             CcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164          108 TDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD  185 (360)
Q Consensus       108 ~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~  185 (360)
                      +.+++...... +.+.+++||++| ..|..+.+.|+++++++.+++.|+.+|++...   .+++.||+... |+++++ .
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-P~~~~~-~   76 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYGIRSI-PTLLLF-K   76 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCcC-CEEEEE-e
Confidence            34555554444 457889999999 99999999999999999988999999999875   88999999998 998655 4


Q ss_pred             CCCcccccCCCCCCHHHHHHHHHHH
Q 018164          186 NKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       186 ~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      .+. ....+.|..+.+.|.+|+++.
T Consensus        77 ~g~-~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        77 NGK-EVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             CCc-EeeeecCCCCHHHHHHHHHhh
Confidence            332 233446778889999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.02  E-value=1.9e-09  Score=99.55  Aligned_cols=107  Identities=11%  Similarity=0.101  Sum_probs=86.5

Q ss_pred             cCCceeecCccccccccc---CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHH-hhcCC
Q 018164          100 KFPLVTKLTDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFL-TLFGL  173 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~---~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~-~~~gi  173 (360)
                      ..+.|.+||+.||+..+.   .+.+++|.||++| ++|+.+.+.|.++|+++.++ +.|+.+|++...  ..++ +.|+|
T Consensus       349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I  426 (463)
T TIGR00424       349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL  426 (463)
T ss_pred             CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence            345789999999999764   6678999999999 99999999999999999875 899999998653  1444 78999


Q ss_pred             CCCCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHH
Q 018164          174 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRL  210 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~  210 (360)
                      ..+ |+++++ ..+......|. |.++.+.|..||+..
T Consensus       427 ~~~-PTii~F-k~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       427 GSF-PTILFF-PKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             Ccc-ceEEEE-ECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            999 999644 44433445566 579999999999863

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.00  E-value=1.9e-09  Score=103.78  Aligned_cols=97  Identities=24%  Similarity=0.496  Sum_probs=75.6

Q ss_pred             cccccccc---ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcE
Q 018164          238 KTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPT  305 (360)
Q Consensus       238 ~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pt  305 (360)
                      +++++.+.   .++++++|.||++||.+|+.+.+..   .++.+.++   ++.+.++|++.++-      .++++.++||
T Consensus       461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt  537 (571)
T PRK00293        461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLPT  537 (571)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence            45555553   2368999999999999999998865   56777775   58899999987632      3579999999


Q ss_pred             EEEEe-CCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          306 LLFYP-AGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       306 i~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +++|+ +|+..+..++.|..+.+++.++|++..
T Consensus       538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            99996 455533457889999999999998753

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.99  E-value=3.5e-09  Score=78.69  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164          110 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD  185 (360)
Q Consensus       110 ~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~  185 (360)
                      ++|+.. ..+.++++.||++| +.|+.+.+.|.+++.++++   .+.++.+||+..+   .+++.++|.++ |+++++ .
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~I~~~-Pt~~l~-~   80 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFGVRGY-PTIKLL-K   80 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcCCccc-cEEEEE-c
Confidence            456654 34568899999999 9999999999999999953   4999999999875   89999999999 999654 4


Q ss_pred             CCCcccccCCCCCCHHHHHHHHHHH
Q 018164          186 NKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       186 ~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      ++  ..+.+.|..+.+.|.+|+++.
T Consensus        81 ~~--~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          81 GD--LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CC--CceeecCCCCHHHHHHHHHhh
Confidence            33  344568899999999999874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.99  E-value=2.7e-09  Score=78.62  Aligned_cols=94  Identities=13%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             eeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      +.+++..||+.....+.+.++.|+++|   ++|..+.+.|.++|++|.+++.|+.+|++..+   .++..|||.+. |++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~V~sI-PTl   87 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFGVLRT-PAL   87 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcCCCcC-CEE
Confidence            347889999998888888999999995   89999999999999999999999999999886   99999999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNI  203 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i  203 (360)
                      +++.++..  ...+.|..+.+.+
T Consensus        88 i~fkdGk~--v~~~~G~~~~~e~  108 (111)
T cd02965          88 LFFRDGRY--VGVLAGIRDWDEY  108 (111)
T ss_pred             EEEECCEE--EEEEeCccCHHHH
Confidence            65554432  2233566665544

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.95  E-value=4.1e-09  Score=97.40  Aligned_cols=105  Identities=12%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             CCceeecCcccccccc---cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC-CcccchhHHh-hcCC
Q 018164          101 FPLVTKLTDINSASVH---SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA-DEDLAKPFLT-LFGL  173 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~---~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~-~~~~~~~l~~-~~gi  173 (360)
                      .+.|..++.++++.+.   ..+.+++|.||++| ++|+.+.+.|.++|.++.+. +.|+.+||+ ...   .++. .|+|
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I  420 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQL  420 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCC
Confidence            3578889999998865   46778999999999 99999999999999999864 999999999 543   7786 6999


Q ss_pred             CCCCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHH
Q 018164          174 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRL  210 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~  210 (360)
                      .++ |+++++ ..+......|. +.++.++|..||+..
T Consensus       421 ~~~-PTil~f-~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        421 GSF-PTILLF-PKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             cee-eEEEEE-eCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            999 999644 44433445566 469999999999864

>PHA02125 thioredoxin-like protein

Probab=98.94  E-value=2.2e-09  Score=74.49  Aligned_cols=67  Identities=13%  Similarity=0.362  Sum_probs=49.8

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecC-CCCHHH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKN  328 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~  328 (360)
                      +++||++||++|+.+.|.+++++        +.++.+|++.+ ++ ..+++.++||++   .|..+  -++.| ..+..+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~--~~~~G~~~~~~~   68 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTL--DRFTGVPRNVAE   68 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEE--EEEeCCCCcHHH
Confidence            78999999999999999987652        46788888777 44 468999999997   45443  25667 344455


Q ss_pred             HHH
Q 018164          329 IAA  331 (360)
Q Consensus       329 l~~  331 (360)
                      |.+
T Consensus        69 l~~   71 (75)
T PHA02125         69 LKE   71 (75)
T ss_pred             HHH
Confidence            544

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.93  E-value=1.1e-08  Score=80.23  Aligned_cols=104  Identities=10%  Similarity=0.105  Sum_probs=81.3

Q ss_pred             cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc
Q 018164          111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI  189 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~  189 (360)
                      .+......+.+++|.||++| ..|+.+.+.+.++++++.+++.|+.||.+... ...+++.|+|.++ |+++ +++.++.
T Consensus        12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i-Pt~v-~~~~~G~   88 (142)
T cd02950          12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI-PHFV-FLDREGN   88 (142)
T ss_pred             CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC-CEEE-EECCCCC
Confidence            34555567788999999999 99999999999999999888888888876432 1378899999998 9995 4443333


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhcCccCC
Q 018164          190 SKFLLESDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       190 ~~y~~~~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      ....+.|..+.+.|.+++..++.|.-.|
T Consensus        89 ~v~~~~G~~~~~~l~~~l~~l~~~~~~~  116 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDALVAGEPLP  116 (142)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence            3444578888999999999999876333

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.93  E-value=6.8e-09  Score=82.07  Aligned_cols=87  Identities=11%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------CC-C-CC---CCCCCcEEEEEeC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------EH-P-KL---QVEEYPTLLFYPA  311 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------~~-~-~~---~i~~~Pti~~~~~  311 (360)
                      .+..+|+||++||++|+...|.+++++++++-  .+..+.+|....           .. . .+   ++.++||.+++.+
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence            45569999999999999999999999998842  344444443210           01 1 12   5788999999966


Q ss_pred             CCccCceEecCCCCHHHHHHHHHHh
Q 018164          312 GDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       312 g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      .+......+.|..+.+.+.+.|.+.
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHh
Confidence            4332122578999999998888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.93  E-value=9.2e-10  Score=83.09  Aligned_cols=84  Identities=17%  Similarity=0.403  Sum_probs=58.6

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHH---HHHhcCCCCEEEEEEeCCCCC---------------------C-CCCCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKL---AKHFKGLDNLVIAKIDASANE---------------------H-PKLQV  300 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~l---a~~~~~~~~~~~~~id~~~~~---------------------~-~~~~i  300 (360)
                      .++++++++|++|||++|+++.+.+...   ...++.  ++.++.+++....                     + ..+++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            4678999999999999999999888864   344443  5777777776531                     1 24599


Q ss_pred             CCCcEEEEEe-CCCccCceEecCCCCHHHHHHHH
Q 018164          301 EEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       301 ~~~Pti~~~~-~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      .++||++++. +|+.+  .++.|..+.++|.++|
T Consensus        81 ~gtPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIV--YRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence            9999999996 45553  4688999999998875

...

>TIGR02740 TraF-like TraF-like protein

Probab=98.92  E-value=4.7e-09  Score=91.30  Aligned_cols=89  Identities=10%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-CCCCCCCCcEEEEEeC-CCc
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-PKLQVEEYPTLLFYPA-GDK  314 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-~~~~i~~~Pti~~~~~-g~~  314 (360)
                      .++.++|+||++||++|+.+.|.++++++.+.-  .+..+.+|....          .+ ..++|.++|+++++.. |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            367899999999999999999999999999852  344444443221          11 2569999999999987 555


Q ss_pred             cCceEecCCCCHHHHHHHHHHhcC
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +. ....|..+.+.|.+.|....+
T Consensus       243 v~-~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FT-PIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EE-EEEeCCCCHHHHHHHHHHHhc
Confidence            42 235589999999999987765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.90  E-value=7.9e-09  Score=78.55  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCC-CCCC---------CCCCCCcEEEEEeC
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPK---------LQVEEYPTLLFYPA  311 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~-~~~~---------~~i~~~Pti~~~~~  311 (360)
                      ...+++++|.|+++||+.|+.|.+. |  .+++..++.  ++.++.+|.+.+ ++..         +++.++|+++++..
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            4678999999999999999999763 3  367777765  799999999876 4421         47889999999955


Q ss_pred             -CCccCceEec-C--CCCHHHHHHHHHHh
Q 018164          312 -GDKANPIKVS-A--RSSSKNIAAFIKEQ  336 (360)
Q Consensus       312 -g~~~~~~~~~-g--~~~~~~l~~~i~~~  336 (360)
                       |+.+....|- +  ..+..++.+++...
T Consensus        90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             CCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence             4443222222 1  24445666666543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.90  E-value=7e-10  Score=90.33  Aligned_cols=99  Identities=19%  Similarity=0.434  Sum_probs=88.1

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      .++.++..|+...+   .+.+++.|++|||..|+.+.+.|...|.--.+. .+.++.+|++.| .+. .|-++..|||+=
T Consensus        25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYH  100 (248)
T KOG0913|consen   25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYH  100 (248)
T ss_pred             eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEE
Confidence            57889999999987   889999999999999999999999998776654 799999999999 554 688999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      .+.|.-.   +|.|.|+.++++.|+...
T Consensus       101 vkDGeFr---rysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen  101 VKDGEFR---RYSGARDKNDFISFEEHR  125 (248)
T ss_pred             eeccccc---cccCcccchhHHHHHHhh
Confidence            9999775   799999999999999754

>PHA02278 thioredoxin-like protein

Probab=98.89  E-value=5.9e-09  Score=76.72  Aligned_cols=94  Identities=13%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEeCC
Q 018164          110 INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNK  187 (360)
Q Consensus       110 ~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~~~  187 (360)
                      +.|.+.+..+.+.+|.||++| ++|+.+.|.+.++++++..++.|+.+|.+..++ +..+++.|+|.+. |+++++.++.
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i-PT~i~fk~G~   83 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST-PVLIGYKDGQ   83 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc-cEEEEEECCE
Confidence            345666667788999999999 999999999999999876667889999886410 1278999999999 9996555443


Q ss_pred             CcccccCCCCCCHHHHHHH
Q 018164          188 AISKFLLESDLTPSNIEEF  206 (360)
Q Consensus       188 ~~~~y~~~~~~~~~~i~~f  206 (360)
                      ...  .+.|..+.+.|.++
T Consensus        84 ~v~--~~~G~~~~~~l~~~  100 (103)
T PHA02278         84 LVK--KYEDQVTPMQLQEL  100 (103)
T ss_pred             EEE--EEeCCCCHHHHHhh
Confidence            222  33677777777665

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=4.5e-09  Score=96.38  Aligned_cols=221  Identities=15%  Similarity=0.150  Sum_probs=132.6

Q ss_pred             CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..|.+|+.++|...+ ..++..+|-||++| ++|..+.|.|+++|+...   .-+.++.|||.... |..+|+.|+|+.+
T Consensus        39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~~  117 (606)
T KOG1731|consen   39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSGY  117 (606)
T ss_pred             CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCCC
Confidence            457889999998754 45557889999999 999999999999999887   35889999999763 6799999999999


Q ss_pred             CCceEEEEeCCC-cccc--cCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEc-CccccccccccCccEE
Q 018164          177 KNTVVTAFDNKA-ISKF--LLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDVL  252 (360)
Q Consensus       177 ~p~~~~~~~~~~-~~~y--~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~-~~~~~~~~~~~~~~~~  252 (360)
                       |++ .++.... ...+  .+.|.....+|...+..-++...-..... .+|.  -.++..-+ ....++.+.+....+.
T Consensus       118 -Ptl-ryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~-~WP~--f~pl~~~~~~~~l~~~~~~~~~yvA  192 (606)
T KOG1731|consen  118 -PTL-RYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYP-SWPN--FDPLKDTTTLEELDEGISTTANYVA  192 (606)
T ss_pred             -cee-eecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCC-CCCC--CCCCCCcchHHHHhcccccccceeE
Confidence             999 5665542 2111  12455556677777665443221110000 1121  01111111 1223333333344555


Q ss_pred             EEE-eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHH
Q 018164          253 LEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA  330 (360)
Q Consensus       253 v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~  330 (360)
                      +.| ..+.       .--++.+-..+... .+.+..+-++++ ...+++.+..|+..+|++|... ++.- ...+.+...
T Consensus       193 iv~e~~~s-------~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~l~~-~~~s~~~y~  262 (606)
T KOG1731|consen  193 IVFETEPS-------DLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-PLWP-SSSSRSAYV  262 (606)
T ss_pred             EEEecCCc-------ccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc-cccc-ccccHHHHH
Confidence            555 3332       11345555555332 344444444444 5556899999999999999774 4432 233444445


Q ss_pred             HHHHHhcC
Q 018164          331 AFIKEQLK  338 (360)
Q Consensus       331 ~~i~~~~~  338 (360)
                      +-|.+.++
T Consensus       263 ~~I~~~lg  270 (606)
T KOG1731|consen  263 KKIDDLLG  270 (606)
T ss_pred             HHHHHHhc
Confidence            55555444

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.89  E-value=1.5e-08  Score=75.23  Aligned_cols=73  Identities=19%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             ccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164          111 NSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK  187 (360)
Q Consensus       111 ~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~  187 (360)
                      ++...+.  .+.+.+|.|+++| ++|+.+.+.|.++|.++.+.+.|+.||.++.+   .+.+.|||.+. |+++++.++.
T Consensus         4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~la~~~~V~~i-PTf~~fk~G~   79 (114)
T cd02954           4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---DFNKMYELYDP-PTVMFFFRNK   79 (114)
T ss_pred             HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHcCCCCC-CEEEEEECCE
Confidence            3444443  4567889999999 99999999999999999998999999999886   99999999998 9997665544

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.89  E-value=1e-08  Score=75.83  Aligned_cols=95  Identities=9%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      -|.+++..+.+.+.+.++.||++| ++|+.+.+.+.+++.++.+. +.|+.+|++ ..   .+++.|+|+.. |+++++.
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~v~~~-Pt~~~~~   79 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYRGKCE-PTFLFYK   79 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcCCCcC-cEEEEEE
Confidence            456677777777888999999999 99999999999999999854 789999998 43   78999999999 9985544


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHH
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                       ++. ......| .+.+.+.++|..
T Consensus        80 -~g~-~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          80 -NGE-LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             -CCE-EEEEEec-CChHHHHHHHhh
Confidence             332 2222344 588888888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.88  E-value=1.8e-08  Score=75.83  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=76.6

Q ss_pred             eeecCc-ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~-~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +..++. +.|...+..+.+.++.||++| ++|+.+.+.+.++++++.+ +.|+.||++...   .+++.|+|... |+++
T Consensus         6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~---~l~~~~~v~~v-Pt~l   80 (113)
T cd02989           6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP---FLVEKLNIKVL-PTVI   80 (113)
T ss_pred             eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH---HHHHHCCCccC-CEEE
Confidence            445555 566666666778899999999 9999999999999999976 999999999875   89999999999 9996


Q ss_pred             EEEeCCCcccc----cC--CCCCCHHHHHHHH
Q 018164          182 TAFDNKAISKF----LL--ESDLTPSNIEEFC  207 (360)
Q Consensus       182 ~~~~~~~~~~y----~~--~~~~~~~~i~~fi  207 (360)
                      ++.++....++    .+  .++++.+++..|+
T Consensus        81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            66554322221    11  2457888888775

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.88  E-value=2.6e-08  Score=93.39  Aligned_cols=90  Identities=21%  Similarity=0.358  Sum_probs=68.2

Q ss_pred             ccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC----------------------------CCC-C
Q 018164          244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA----------------------------SAN-E  294 (360)
Q Consensus       244 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~----------------------------~~~-~  294 (360)
                      .+..+++++|.|||+||++|+.+.|.++++++.++.. ++.+..|..                            +.+ .
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~  130 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT  130 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence            3457889999999999999999999999999998742 455555432                            111 1


Q ss_pred             C-CCCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          295 H-PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       295 ~-~~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      + ..+++.++|+++++ ++|+.+  ..+.|..+.+.|..+|+.-
T Consensus       131 lak~fgV~giPTt~IIDkdGkIV--~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        131 LAQSLNISVYPSWAIIGKDGDVQ--RIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHHcCCCCcCeEEEEcCCCeEE--EEEeCCCCHHHHHHHHHHh
Confidence            1 24589999999777 555443  4788999999999999843

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.85  E-value=2.4e-08  Score=75.88  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=84.5

Q ss_pred             EEcCccccccccccCccEEEEEeCC--CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164          234 IVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~~v~f~~~--~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~  309 (360)
                      .++..+++.++ ...+..+|+|-..  .+..+....-++.++++.+.+ .++.++++|++.+ .+. +++|.++||+++|
T Consensus        21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~F   98 (132)
T PRK11509         21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLVF   98 (132)
T ss_pred             ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            45567788876 5566666666543  356677888899999999964 2599999999999 664 7999999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ++|+.+.  ++.|.++.+.+.+||.+++..+.
T Consensus        99 kdGk~v~--~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         99 TGGNYRG--VLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             ECCEEEE--EEeCcCCHHHHHHHHHHHhcCcC
Confidence            9998863  78899999999999999988654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.84  E-value=1.8e-08  Score=74.91  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=74.1

Q ss_pred             cccccccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEe
Q 018164          111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFD  185 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~  185 (360)
                      .+.+....+.+++|+|+++| +.|+.+.+.+   .++++.+.+++.++.+|++.... ...+++.+++.++ |+++ ++.
T Consensus         3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~-Pti~-~~~   80 (104)
T cd02953           3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP-PTYL-FYG   80 (104)
T ss_pred             HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC-CEEE-EEC
Confidence            45556667788999999999 9999999887   67888888789999999875210 1378899999998 9995 444


Q ss_pred             C-CCcccccCCCCCCHHHHHHHH
Q 018164          186 N-KAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       186 ~-~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      . ++.....+.|..+.+.|.+++
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHh
Confidence            3 334455668889999988876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.82  E-value=1.8e-08  Score=74.59  Aligned_cols=95  Identities=9%  Similarity=0.014  Sum_probs=68.8

Q ss_pred             cccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          110 INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       110 ~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      +++...+.  .+.+++|.||++| ++|+.+.+.|.++++++ +.+.|+.+|++..+-...+++.++|.+. |+++++.++
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~-Pt~~~~~~G   81 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV-PHFLFYKDG   81 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC-CEEEEEeCC
Confidence            34454443  2678889999999 99999999999999999 5699999998865212378999999999 998555333


Q ss_pred             CCcccccCCCCCCHHHHHHHHHH
Q 018164          187 KAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       187 ~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      .  ....+.| ...+.|.+-+..
T Consensus        82 ~--~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          82 E--KIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             e--EEEEEeC-CCHHHHHHHHHh
Confidence            2  2333455 556666665543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.82  E-value=3.6e-08  Score=74.39  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             ceeecCcccccccccC-CCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          103 LVTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      .+.+++..+|...+.. +.++++.||++| ..|+.+.+.|++++.++++   .+.|+.+||.... +..+|+.+++..+ 
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~-   79 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY-   79 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence            4678899999987654 457889999999 9999999999999998863   5999999987432 2478999999999 


Q ss_pred             CceEEEEeC
Q 018164          178 NTVVTAFDN  186 (360)
Q Consensus       178 p~~~~~~~~  186 (360)
                      |+++++..+
T Consensus        80 Pt~~lf~~~   88 (114)
T cd02992          80 PTLRYFPPF   88 (114)
T ss_pred             CEEEEECCC
Confidence            998644333

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.81  E-value=1.5e-07  Score=91.05  Aligned_cols=183  Identities=15%  Similarity=0.194  Sum_probs=128.9

Q ss_pred             CceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe-CCCcccccCCC
Q 018164          120 IKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLES  196 (360)
Q Consensus       120 ~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~-~~~~~~y~~~~  196 (360)
                      .+..+.+|.+.  +.|.++...+++++ ...++|.+...|.....   .+.+.||+... |++ .+.+ .+......|.|
T Consensus       366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~---~~~~~~~v~~~-P~~-~i~~~~~~~~~i~f~g  439 (555)
T TIGR03143       366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEP---ESETLPKITKL-PTV-ALLDDDGNYTGLKFHG  439 (555)
T ss_pred             CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccch---hhHhhcCCCcC-CEE-EEEeCCCcccceEEEe
Confidence            45555555544  47888888888888 44567999888876554   78899999877 877 4543 33223345567


Q ss_pred             CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccE-EEEEeCCCChhhHHHHHHHHHHHH
Q 018164          197 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSKQIEKLAK  275 (360)
Q Consensus       197 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~la~  275 (360)
                      -..-.++..||...++-.       .+.        ..|+.+..+. +..-++++ +-.|.+++|++|......+.+++.
T Consensus       440 ~P~G~Ef~s~i~~i~~~~-------~~~--------~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~  503 (555)
T TIGR03143       440 VPSGHELNSFILALYNAA-------GPG--------QPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIAS  503 (555)
T ss_pred             cCccHhHHHHHHHHHHhc-------CCC--------CCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHH
Confidence            777788888998876421       111        1233333333 33335665 445689999999999999988887


Q ss_pred             HhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          276 HFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       276 ~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ...   ++..-.+|++.. ++. +++|.++|++++  +|..    .+.|..+.+++..||
T Consensus       504 ~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~----~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       504 LNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ----VYFGKKTIEEMLELI  554 (555)
T ss_pred             hCC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE----EEeeCCCHHHHHHhh
Confidence            754   588888899888 665 899999999987  4533    578988999999887

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.80  E-value=5.4e-08  Score=79.52  Aligned_cols=102  Identities=16%  Similarity=0.326  Sum_probs=75.9

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------  293 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------  293 (360)
                      +..++++.+.--. -.+++++|+||++||+.|....+.+.++++.+.+. ++.+..++++..                  
T Consensus        46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~  123 (173)
T PRK03147         46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVA  123 (173)
T ss_pred             eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence            4445555443221 24678999999999999999999999999999763 577787876532                  


Q ss_pred             -----CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          294 -----EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       294 -----~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                           .+ ..+++..+|+++++..++++ ...+.|..+.+.+.+++.+.
T Consensus       124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i-~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        124 IDKGRQVIDAYGVGPLPTTFLIDKDGKV-VKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             ECCcchHHHHcCCCCcCeEEEECCCCcE-EEEEeCCCCHHHHHHHHHHh
Confidence                 11 24688999999999765554 33678999999999998753

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.80  E-value=2.2e-08  Score=78.94  Aligned_cols=81  Identities=11%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             ceeecCccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCC---
Q 018164          103 LVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEE---  175 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~---  175 (360)
                      .+.++++++|.....  .+.+++|.||++| ++|+.+.+.|.++++++.+ ++.|+.||+++.+   .+++.|+|..   
T Consensus        29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~~  105 (152)
T cd02962          29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSPL  105 (152)
T ss_pred             ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecCC
Confidence            567788888887653  2457899999999 9999999999999999985 5999999999886   8999999987   


Q ss_pred             ---CCCceEEEEeCC
Q 018164          176 ---SKNTVVTAFDNK  187 (360)
Q Consensus       176 ---~~p~~~~~~~~~  187 (360)
                         + |+++++.++.
T Consensus       106 v~~~-PT~ilf~~Gk  119 (152)
T cd02962         106 SKQL-PTIILFQGGK  119 (152)
T ss_pred             cCCC-CEEEEEECCE
Confidence               7 9996555443

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.78  E-value=5.2e-08  Score=75.31  Aligned_cols=102  Identities=18%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             ccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          110 INSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       110 ~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      +.++..+  ..+.+.++-|+++| ++|+.+.|.|.++|+++.+.+.|+.||.++.+   ++++.|+|... ||++.++.+
T Consensus        12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---dla~~y~I~~~-~t~~~ffk~   87 (142)
T PLN00410         12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---DFNTMYELYDP-CTVMFFFRN   87 (142)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHcCccCC-CcEEEEEEC
Confidence            3444433  24567889999999 99999999999999999998999999999886   99999999976 777645555


Q ss_pred             CCcccccCCC--------CCCHHHHHHHHHHHhcCcc
Q 018164          187 KAISKFLLES--------DLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       187 ~~~~~y~~~~--------~~~~~~i~~fi~~~~~g~~  215 (360)
                      +....-...|        ..+.+.|.+-++.++.|..
T Consensus        88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence            4322222244        3677888888888776543

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.77  E-value=3.7e-08  Score=74.30  Aligned_cols=100  Identities=15%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CceeecCcccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+.+++.++|...+...   .++++.||++| +.|+.+.+.++++|.++.+ +.|+.||++..    .+++.++|... 
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~i~~~-   77 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLDIKVL-   77 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcCCCcC-
Confidence            346677777787655443   67889999999 9999999999999999975 89999999854    78999999999 


Q ss_pred             CceEEEEeCCCccccc----CC-CCCCHHHHHHHH
Q 018164          178 NTVVTAFDNKAISKFL----LE-SDLTPSNIEEFC  207 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~----~~-~~~~~~~i~~fi  207 (360)
                      |+++++.++....++.    +. ...+.+.|.+|+
T Consensus        78 Pt~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          78 PTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             CEEEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence            9996665543322221    11 235566666554

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.76  E-value=2.9e-08  Score=72.69  Aligned_cols=91  Identities=13%  Similarity=0.132  Sum_probs=68.5

Q ss_pred             ccccccccCC--CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          110 INSASVHSSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       110 ~~~~~~~~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      ++++......  .++++.||++| ..|+++.+.|.+++.++...+.|+.+|++..+   .+++.|++... |+++++ ..
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~-Pt~~~~-~~   77 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---EISEKFEITAV-PTFVFF-RN   77 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---HHHHhcCCccc-cEEEEE-EC
Confidence            4455555444  78889999999 99999999999999998778999999999775   89999999998 998554 43


Q ss_pred             CCcccccCCCCCCHHHHHHHH
Q 018164          187 KAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       187 ~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      +. ....+.| .+.+.|.+.|
T Consensus        78 g~-~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          78 GT-IVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             CE-EEEEEeC-CCHHHHHHhh
Confidence            32 2222233 5666666654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.76  E-value=5e-08  Score=73.46  Aligned_cols=91  Identities=12%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE  195 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~  195 (360)
                      ..+...+++|+++| +.|+.+.+.+.+++..+ +++.|..+|.+..+   .++..||+... |+++++.+++......+.
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~v~~v-Pt~~i~~~g~~~~~~~~~   94 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYGVERV-PTTIFLQDGGKDGGIRYY   94 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcCCCcC-CEEEEEeCCeecceEEEE
Confidence            44556677778899 99999999999999988 56999999999775   89999999999 999655444333333557


Q ss_pred             CCCCHHHHHHHHHHHhc
Q 018164          196 SDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       196 ~~~~~~~i~~fi~~~~~  212 (360)
                      |-.+...+.+||..+++
T Consensus        95 G~~~~~el~~~i~~i~~  111 (113)
T cd02975          95 GLPAGYEFASLIEDIVR  111 (113)
T ss_pred             ecCchHHHHHHHHHHHh
Confidence            88888999999998764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.73  E-value=8e-08  Score=79.23  Aligned_cols=86  Identities=17%  Similarity=0.338  Sum_probs=64.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-C-----------------------CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-H-----------------------PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~-----------------------~~~~i~  301 (360)
                      ..++++|.||++||++|+...|.+.++++.     ++.+..++.+.+ + .                       ..+++.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~  141 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY  141 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence            578999999999999999999999888642     355666654332 1 0                       135788


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+.+++..+.++ ..++.|..+.+.+.++|...+.
T Consensus       142 ~~P~t~vid~~G~i-~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        142 GAPETFLIDGNGII-RYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             cCCeEEEECCCceE-EEEEecCCCHHHHHHHHHHHHH
Confidence            99988887544443 3577899999999999888764

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.73  E-value=2.9e-08  Score=67.25  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      -+++|+++||++|+.+.+.+++++....   ++.+..+|++.+ ++ ..+++.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            3678999999999999999999987542   699999999887 44 4689999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.71  E-value=7.9e-08  Score=70.37  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=70.9

Q ss_pred             ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164          116 HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL  194 (360)
Q Consensus       116 ~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~  194 (360)
                      ...+.+++++|+++| ..|..+.+.++++++++.+++.++.+|++..+   .+++.+++.+. |+++++ ..+ .....+
T Consensus        10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~v~~v-Pt~~i~-~~g-~~v~~~   83 (97)
T cd02949          10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAGIMGT-PTVQFF-KDK-ELVKEI   83 (97)
T ss_pred             HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCCCeec-cEEEEE-ECC-eEEEEE
Confidence            345667888999999 99999999999999999888999999998775   88999999988 998655 433 234445


Q ss_pred             CCCCCHHHHHHHHH
Q 018164          195 ESDLTPSNIEEFCS  208 (360)
Q Consensus       195 ~~~~~~~~i~~fi~  208 (360)
                      .|..+.+.|.+|++
T Consensus        84 ~g~~~~~~~~~~l~   97 (97)
T cd02949          84 SGVKMKSEYREFIE   97 (97)
T ss_pred             eCCccHHHHHHhhC
Confidence            78888888888763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.70  E-value=1.3e-07  Score=77.20  Aligned_cols=85  Identities=22%  Similarity=0.341  Sum_probs=62.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------C-CC-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------N-EH-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~-~~-~~~~i~  301 (360)
                      .+++++|+||++||++|+.+.|.++++++.     ++.+..++.+.                       + .+ ..+++.
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~  136 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY  136 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence            578999999999999999999999888653     24444444321                       1 11 245788


Q ss_pred             CCcEEEEEe-CCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          302 EYPTLLFYP-AGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       302 ~~Pti~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+.+++. +|+.  ..++.|..+.+.+.++|.+.++
T Consensus       137 ~~P~~~~id~~G~i--~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       137 GAPETFLVDGNGVI--LYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eCCeEEEEcCCceE--EEEEeccCCHHHHHHHHHHHhh
Confidence            999877774 5543  3467799999999999998764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.69  E-value=6.8e-08  Score=75.11  Aligned_cols=68  Identities=22%  Similarity=0.396  Sum_probs=52.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCCC--------------------------CC-CC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASANE--------------------------HP-KL  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~--------------------------~~-~~  298 (360)
                      .++.++|.||++||++|+...|.++++++.+++. .++.+..++++.+.                          +. .+
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3689999999999999999999999999998753 25666666554421                          11 36


Q ss_pred             CCCCCcEEEEEeCCCc
Q 018164          299 QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       299 ~i~~~Pti~~~~~g~~  314 (360)
                      ++.++|+++++.++++
T Consensus        96 ~v~~iPt~~lid~~G~  111 (132)
T cd02964          96 KVEGIPTLVVLKPDGD  111 (132)
T ss_pred             CCCCCCEEEEECCCCC
Confidence            8999999999975544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PTZ00051 thioredoxin; Provisional

Probab=98.66  E-value=8e-08  Score=70.49  Aligned_cols=74  Identities=14%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164          107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD  185 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~  185 (360)
                      -+.+++..+...+.++++.||++| ..|+.+.+.|.+++.++.+ +.|+.+|++...   .+++.|++.+. |+++++.+
T Consensus         6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~~~~~   80 (98)
T PTZ00051          6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELS---EVAEKENITSM-PTFKVFKN   80 (98)
T ss_pred             cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchH---HHHHHCCCcee-eEEEEEeC
Confidence            344566777777788899999999 9999999999999999875 999999999765   89999999998 99865543

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.66  E-value=8.6e-08  Score=74.44  Aligned_cols=68  Identities=24%  Similarity=0.408  Sum_probs=52.2

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-C------------------------C-CCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-E------------------------H-PKLQ  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~------------------------~-~~~~  299 (360)
                      .+++++|+||++||+.|+.+.|.+.++.+.+++. .++.+..++++.+ +                        + ..++
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3679999999999999999999999999988653 2566666665533 1                        1 1468


Q ss_pred             CCCCcEEEEEeCCCc
Q 018164          300 VEEYPTLLFYPAGDK  314 (360)
Q Consensus       300 i~~~Pti~~~~~g~~  314 (360)
                      +.++|+++++.++++
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            999999999975444

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.66  E-value=1.7e-07  Score=70.81  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             cccCccEEEEEeCCCChhhHHHHH-HH--HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEEEEeC--CCcc
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSK-QI--EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLFYPA--GDKA  315 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~~~~~--g~~~  315 (360)
                      ...+++++|+|+++||..|+.+.. .|  .++.+.++.  ++.+..+|.+..+.    ..+++.++|+++++..  |.. 
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~-   90 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV-   90 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE-
Confidence            345789999999999999999865 44  467777765  78888899876432    2468999999999965  444 


Q ss_pred             CceEecCCCCHHHHHHHHHHhcC
Q 018164          316 NPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                       ..++.|..+.+.+.+.|++...
T Consensus        91 -l~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          91 -LKVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             -eEEEcCCCCHHHHHHHHHHHHh
Confidence             3478899999999999987653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.65  E-value=1.9e-07  Score=70.93  Aligned_cols=68  Identities=10%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCc
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~  314 (360)
                      ..++++++|+|+++||++|+.|....   .++.+.++.  ++..+.++.+..+. ......++||++|+..+.+
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~   91 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLT   91 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECCCCC
Confidence            45689999999999999999998765   356666654  57766777653321 1112367999999955444

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.64  E-value=1e-07  Score=69.46  Aligned_cols=67  Identities=25%  Similarity=0.518  Sum_probs=50.2

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCC-------------------------CCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP-------------------------KLQV  300 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~-------------------------~~~i  300 (360)
                      +++++|+|||+||++|....|.+.++.+.+++..++.+..|..+..  ...                         .+++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4789999999999999999999999999998434788888887654  110                         1157


Q ss_pred             CCCcEEEEEeCCCc
Q 018164          301 EEYPTLLFYPAGDK  314 (360)
Q Consensus       301 ~~~Pti~~~~~g~~  314 (360)
                      .++|+++++..+++
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            78899988866543

...

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.64  E-value=1.5e-07  Score=72.16  Aligned_cols=90  Identities=22%  Similarity=0.400  Sum_probs=62.5

Q ss_pred             EcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC---------------------CCC
Q 018164          235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---------------------SAN  293 (360)
Q Consensus       235 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---------------------~~~  293 (360)
                      +.++.+..... ..++++|.||++||+.|..+.|.+..+++.+.    +....+|-                     +.+
T Consensus         8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            44444444332 35899999999999999999999999887742    22222221                     122


Q ss_pred             -CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHH
Q 018164          294 -EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA  331 (360)
Q Consensus       294 -~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~  331 (360)
                       .+ ..+++.++|+++++.+|+ + ...+.|..+.++|.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~g-i-~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGG-I-VFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCC-e-EEEEeccCCHHHHHh
Confidence             23 257999999999998776 4 456789888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.64  E-value=1.6e-07  Score=67.65  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=70.7

Q ss_pred             cccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc
Q 018164          111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI  189 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~  189 (360)
                      ++...+....+.+++|+.+| ..|..+.+.++++++. .+.+.|+.+|++...   .+++.+++.+. |+++++. .+. 
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~v~~~-P~~~~~~-~g~-   74 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---ELAEEYGVRSI-PTFLFFK-NGK-   74 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---hHHHhcCcccc-cEEEEEE-CCE-
Confidence            34455555577889999999 9999999999999999 567999999999765   89999999998 9986553 332 


Q ss_pred             ccccCCCCCCHHHHHHHH
Q 018164          190 SKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       190 ~~y~~~~~~~~~~i~~fi  207 (360)
                      ....+.|..+.+.|.+|+
T Consensus        75 ~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          75 EVDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEEecCCCHHHHHHHh
Confidence            233346777888888886

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.61  E-value=2.1e-07  Score=71.86  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----------------------CC-CC-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----------------------AN-EH-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----------------------~~-~~-~~~~i~  301 (360)
                      .+++++|+||++||+.|..+.|.+.++++.+    ++.++.++.+                       .+ .+ ..+++.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~   99 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY   99 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence            3679999999999999999999999998775    2555555432                       11 22 246889


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l  329 (360)
                      ++|+.+++.+++++ ..++.|..+.+.|
T Consensus       100 ~~P~~~~ld~~G~v-~~~~~G~~~~~~~  126 (127)
T cd03010         100 GVPETFLIDGDGII-RYKHVGPLTPEVW  126 (127)
T ss_pred             CCCeEEEECCCceE-EEEEeccCChHhc
Confidence            99977777533343 3467888877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.61  E-value=2.6e-07  Score=75.06  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=79.8

Q ss_pred             CCceeecCc-ccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          101 FPLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l~~-~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ...+.+++. ++|...+...   .+++|.||++| +.|+.+.+.|..+|.+|.. +.|+.||++..    .++..|+|..
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~----~l~~~f~v~~  135 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT----GASDEFDTDA  135 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch----hhHHhCCCCC
Confidence            466778888 8887765433   37888999999 9999999999999999974 99999999864    6889999999


Q ss_pred             CCCceEEEEeCCCccccc----C-CCCCCHHHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKFL----L-ESDLTPSNIEEFCSR  209 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~----~-~~~~~~~~i~~fi~~  209 (360)
                      . |+++++.++.....+.    . ..+++.+.|..|+..
T Consensus       136 v-PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         136 L-PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             C-CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            8 9997666554322221    1 235889999988865

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.59  E-value=1.8e-07  Score=66.86  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHH
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSK  327 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~  327 (360)
                      .-+..|+++||++|..+.+.+.+++..+.   ++.+..+|.+.. +. .+++|.++|++++  +|+.    .+.|..+.+
T Consensus        14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~----~~~G~~~~~   84 (89)
T cd03026          14 INFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL----FGFGRMTLE   84 (89)
T ss_pred             EEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE----EEeCCCCHH
Confidence            35778999999999999999999997764   689999998887 44 4789999999975  6644    456866666


Q ss_pred             HHH
Q 018164          328 NIA  330 (360)
Q Consensus       328 ~l~  330 (360)
                      ++.
T Consensus        85 e~~   87 (89)
T cd03026          85 EIL   87 (89)
T ss_pred             HHh
Confidence            653

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.58  E-value=2.9e-07  Score=69.25  Aligned_cols=66  Identities=24%  Similarity=0.536  Sum_probs=54.3

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------------CC-CCCCCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVEE  302 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~-~~~~i~~  302 (360)
                      +++++|+||++||++|....+.+.++...+.+ .++.++.++++.+                        .+ ..+++.+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            67999999999999999999999999999863 3788999988773                        12 2568889


Q ss_pred             CcEEEEEeCCCc
Q 018164          303 YPTLLFYPAGDK  314 (360)
Q Consensus       303 ~Pti~~~~~g~~  314 (360)
                      +|+++++..+.+
T Consensus        98 ~P~~~l~d~~g~  109 (116)
T cd02966          98 LPTTFLIDRDGR  109 (116)
T ss_pred             cceEEEECCCCc
Confidence            999999964444

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.56  E-value=1.7e-07  Score=73.23  Aligned_cols=68  Identities=13%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC------CCEEEEEEeCCCC-C-C-----------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-E-H-----------------------  295 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~-~-~-----------------------  295 (360)
                      ..++++|+|||+||++|+...|.+.++.+++++.      .++.+..|+.+.+ . .                       
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            4689999999999999999999999998877542      2578888876653 1 1                       


Q ss_pred             --CCCCCCCCcEEEEEeCCCc
Q 018164          296 --PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       296 --~~~~i~~~Pti~~~~~g~~  314 (360)
                        ..+++.++|+++++...++
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence              0236778999999976544

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.4e-07  Score=66.87  Aligned_cols=83  Identities=14%  Similarity=0.229  Sum_probs=64.9

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD  197 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~  197 (360)
                      ++..++.||++| ++|+.+.|.+.++|.+|.+ +.|+.+|+++.   +.+++.++++.. |+++.+.++.....+  - +
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~-PTf~f~k~g~~~~~~--v-G   92 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAM-PTFVFYKGGEEVDEV--V-G   92 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEe-eEEEEEECCEEEEEE--e-c
Confidence            466778899999 9999999999999999999 99999999983   599999999999 999666544433333  2 2


Q ss_pred             CCHHHHHHHHHH
Q 018164          198 LTPSNIEEFCSR  209 (360)
Q Consensus       198 ~~~~~i~~fi~~  209 (360)
                      .+...+.+.+..
T Consensus        93 a~~~~l~~~i~~  104 (106)
T KOG0907|consen   93 ANKAELEKKIAK  104 (106)
T ss_pred             CCHHHHHHHHHh
Confidence            445566655543

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.53  E-value=5.2e-08  Score=68.87  Aligned_cols=64  Identities=22%  Similarity=0.590  Sum_probs=49.8

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEe
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP  310 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~  310 (360)
                      ...+++++|+|+++||+.|+.+...+   .++.+.+.+  ++.+..+|.+..+- ..+...++|+++++.
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence            35689999999999999999998877   456665655  79999999977632 233336799999985

...

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.52  E-value=1.1e-06  Score=70.91  Aligned_cols=84  Identities=10%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---CC-----------C-CCCC--CCCcEEEEEeCCCc
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---EH-----------P-KLQV--EEYPTLLFYPAGDK  314 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~~-----------~-~~~i--~~~Pti~~~~~g~~  314 (360)
                      +|.||++||++|++..|.+.+++++++    +.+..|..+..   ..           . .+++  .++|+.+++..+.+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            778999999999999999999999984    34444443322   11           1 2353  59999999966555


Q ss_pred             cCceEecCCCCHHHHHHHHHHhcCC
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      +..-.+.|..+.+.|.+.|.+.++.
T Consensus       149 i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 EALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHhh
Confidence            3112578999999999999888765

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.52  E-value=1.9e-07  Score=86.93  Aligned_cols=97  Identities=24%  Similarity=0.444  Sum_probs=71.8

Q ss_pred             cccccccc-cCccEEEEEeCCCChhhHHHHHHHH-HHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcEEEEEe
Q 018164          239 TFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIE-KLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPTLLFYP  310 (360)
Q Consensus       239 ~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~-~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pti~~~~  310 (360)
                      ..++.+.+ ..++++|.|||+||-.||.+.+..- +....++ ..+++..+.|.++|+-      .++++-+.|++++|+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~  542 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG  542 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            44454422 2359999999999999999987654 2222222 2379999999999943      367999999999998


Q ss_pred             CCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          311 AGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       311 ~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      .+... +....|.++.+.+.+++++..
T Consensus       543 ~~g~e-~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         543 PQGSE-PEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             CCCCc-CcCCcceecHHHHHHHHHHhc
Confidence            55443 334889999999999998753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.49  E-value=4.8e-07  Score=93.25  Aligned_cols=89  Identities=21%  Similarity=0.442  Sum_probs=70.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC---CC------------------------C-CC-CC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---SA------------------------N-EH-PK  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---~~------------------------~-~~-~~  297 (360)
                      ..++++|.|||+||++|+...|.++++++++++. ++.+..+.+   +.                        + .+ ..
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            4789999999999999999999999999999753 577766632   11                        0 11 24


Q ss_pred             CCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          298 LQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       298 ~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +++.++|+++++ ++|+.+  .++.|....+.|.++|...+.
T Consensus       498 ~~V~~iPt~ilid~~G~iv--~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLI--AQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             cCCCccceEEEECCCCeEE--EEEecccCHHHHHHHHHHHHH
Confidence            688999999999 566553  468899999999999998865

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.47  E-value=9.6e-07  Score=62.45  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecC-CCC
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSE-PDR   79 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~-~~~   79 (360)
                      ++.+.++|.. ++..+-.|||||.+.++.+++.|+.|| -+++++.|.+...... ......   +.| +++||+. ...
T Consensus         3 ef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~---~~~-~i~frp~~~~~   76 (91)
T cd03070           3 EFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP---GDN-IIYFPPGHNAP   76 (91)
T ss_pred             eecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC---CCC-eEEECCCCCCC
Confidence            4788899988 888899999999999999999999999 7889999999776554 222222   334 6779975 344


Q ss_pred             ccccCCCCC
Q 018164           80 YTGYEETFI   88 (360)
Q Consensus        80 ~~~y~g~~~   88 (360)
                      ...|.|.++
T Consensus        77 ~~~y~G~~t   85 (91)
T cd03070          77 DMVYLGSLT   85 (91)
T ss_pred             ceEEccCCC
Confidence            478889874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.46  E-value=2.5e-06  Score=62.95  Aligned_cols=90  Identities=11%  Similarity=0.092  Sum_probs=68.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-C
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-E  195 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~  195 (360)
                      .+++.++-|+++| ++|+.+.+.|.++|.++++.+.|+.||.++.+   ++++.|+|... |+.+.+.++. ..+..+ .
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~---dva~~y~I~am-Ptfvffkngk-h~~~d~gt   87 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP---VYTQYFDISYI-PSTIFFFNGQ-HMKVDYGS   87 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH---HHHHhcCceeC-cEEEEEECCc-EEEEecCC
Confidence            4667888999999 99999999999999999877999999999886   99999999888 9996444443 222222 2


Q ss_pred             CC--------CCHHHHHHHHHHHhc
Q 018164          196 SD--------LTPSNIEEFCSRLLH  212 (360)
Q Consensus       196 ~~--------~~~~~i~~fi~~~~~  212 (360)
                      |+        -+.+.+..-++....
T Consensus        88 ~~~~k~~~~~~~k~~~idi~e~~yr  112 (114)
T cd02986          88 PDHTKFVGSFKTKQDFIDLIEVIYR  112 (114)
T ss_pred             CCCcEEEEEcCchhHHHHHHHHHHc
Confidence            22        245666666665543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2.3e-07  Score=74.79  Aligned_cols=86  Identities=17%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             CCceEEE-cCccccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCC----
Q 018164          229 NANVQIV-VGKTFDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQV----  300 (360)
Q Consensus       229 ~~~v~~l-~~~~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i----  300 (360)
                      .+.++.. .++.+++.+ .+..+.|+|.|++.|...|..+.|.+.+|+.++.. +.++||++|+... +.. +++|    
T Consensus       123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~  201 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSP  201 (265)
T ss_pred             chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCc
Confidence            4567777 445666655 34455899999999999999999999999999976 3899999999998 553 5644    


Q ss_pred             --CCCcEEEEEeCCCcc
Q 018164          301 --EEYPTLLFYPAGDKA  315 (360)
Q Consensus       301 --~~~Pti~~~~~g~~~  315 (360)
                        ..+||+.+|..|+.+
T Consensus       202 ~srQLPT~ilFq~gkE~  218 (265)
T KOG0914|consen  202 GSRQLPTYILFQKGKEV  218 (265)
T ss_pred             ccccCCeEEEEccchhh
Confidence              479999999999876

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.44  E-value=5.9e-07  Score=67.83  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEE
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI  288 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i  288 (360)
                      ++++++|.||++||++|+...|.++++++.+.+  ++.+..+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v   59 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA   59 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence            368999999999999999999999999888765  4544444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>smart00594 UAS UAS domain

Probab=98.43  E-value=1.9e-06  Score=65.86  Aligned_cols=93  Identities=10%  Similarity=0.209  Sum_probs=67.9

Q ss_pred             cccccc---cccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEEE
Q 018164          239 TFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLF  308 (360)
Q Consensus       239 ~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~~  308 (360)
                      +|++.+   ....|.++|+|+++||..|..+... |  .++.+.++.  ++.+..+|.+..+-    ..++++++|++.+
T Consensus        15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~   92 (122)
T smart00594       15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI   92 (122)
T ss_pred             CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence            444443   3457799999999999999998764 3  456666765  78888889877633    2569999999999


Q ss_pred             EeCCC--cc-C-ceEecCCCCHHHHHHHH
Q 018164          309 YPAGD--KA-N-PIKVSARSSSKNIAAFI  333 (360)
Q Consensus       309 ~~~g~--~~-~-~~~~~g~~~~~~l~~~i  333 (360)
                      +....  .. . .-+..|..+.+.|+.+|
T Consensus        93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       93 VDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            94332  10 0 22577999999998876

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.41  E-value=2.6e-06  Score=60.08  Aligned_cols=78  Identities=8%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS  201 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~  201 (360)
                      +.+|+.+| +.|+.+.+.+.+++..++..+.+..+|.+...   .+++.+|+.+. |+++ + ++.    ..+.|..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~v-Pt~~-~-~g~----~~~~G~~~~~   72 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYGIMAV-PAIV-I-NGD----VEFIGAPTKE   72 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcCCccC-CEEE-E-CCE----EEEecCCCHH
Confidence            56788899 99999999999999999888999999998775   88999999998 9984 3 321    2446888999


Q ss_pred             HHHHHHHHH
Q 018164          202 NIEEFCSRL  210 (360)
Q Consensus       202 ~i~~fi~~~  210 (360)
                      .|.++++..
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.38  E-value=2.3e-06  Score=70.46  Aligned_cols=103  Identities=14%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             ccCCceeecCcccccccc-cCC--CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164           99 NKFPLVTKLTDINSASVH-SSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus        99 ~~~p~v~~l~~~~~~~~~-~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      .....|.+++..+|...+ ..+  .+++|.||++| +.|+.+.+.|..+|.+|.. +.|+.||++.      .+..|++.
T Consensus        79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~  151 (192)
T cd02988          79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK  151 (192)
T ss_pred             CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence            446788889998887643 332  36788999999 9999999999999999975 9999999863      35789999


Q ss_pred             CCCCceEEEEeCCCcccc----cCCC-CCCHHHHHHHHHH
Q 018164          175 ESKNTVVTAFDNKAISKF----LLES-DLTPSNIEEFCSR  209 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y----~~~~-~~~~~~i~~fi~~  209 (360)
                      .. |++++|.++.....+    .+.| .++.+.|..++.+
T Consensus       152 ~l-PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         152 NL-PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CC-CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            88 999766665432222    1233 5788898888765

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.38  E-value=1.9e-06  Score=66.29  Aligned_cols=97  Identities=10%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             cccCC-CceEEEEEEec-cchHHHHHHHH---HHHHhhcCceEEEEEeCCCcc----------cchhHHhhcCCCCCCCc
Q 018164          115 VHSSP-IKLQVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADED----------LAKPFLTLFGLEESKNT  179 (360)
Q Consensus       115 ~~~~~-~~~~v~f~~~~-~~~~~~~~~~~---~la~~~~~~i~f~~vd~~~~~----------~~~~l~~~~gi~~~~p~  179 (360)
                      ....+ ++.+|.|+++| +.|+.+.+.+.   .+...+++.+.++.+|.+...          -...++..|++... |+
T Consensus         9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~-Pt   87 (125)
T cd02951           9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT-PT   87 (125)
T ss_pred             HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-cE
Confidence            34455 78999999999 99999998874   677777777888999877430          01378899999998 99


Q ss_pred             eEEEEeCC-CcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          180 VVTAFDNK-AISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       180 ~~~~~~~~-~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      ++ +++.+ +.....+.|..+.+.+.++++.++++
T Consensus        88 ~~-~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          88 VI-FLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             EE-EEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            85 55544 33344557888999999999998865

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.36  E-value=6.6e-06  Score=60.61  Aligned_cols=104  Identities=19%  Similarity=0.403  Sum_probs=74.0

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHH-HHhcCCCCEEEEEEeCCCC-CC------CCCCC--
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASAN-EH------PKLQV--  300 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la-~~~~~~~~~~~~~id~~~~-~~------~~~~i--  300 (360)
                      ....|+.-||++++ ...+.+||.|=...  +-=.-+..|.++| +.....+++.+|.+-+... +-      .++++  
T Consensus         5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            45678889999998 55689999994322  1122356788999 5555555899999988765 22      24566  


Q ss_pred             CCCcEEEEEeCCCccCceEe--cCCCCHHHHHHHHHHhcC
Q 018164          301 EEYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       301 ~~~Pti~~~~~g~~~~~~~~--~g~~~~~~l~~~i~~~~~  338 (360)
                      ..||.+++|..| ..+|++|  .|..+.++|.+|++++++
T Consensus        82 e~fPv~~LF~~~-~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGD-KEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESS-TTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCC-CCCCccCCccCCccHHHHHHHHHhCCC
Confidence            679999999944 4479999  899999999999999865

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.32  E-value=1.9e-06  Score=65.66  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc---c-----chhHHhhcCC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED---L-----AKPFLTLFGL  173 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~---~-----~~~l~~~~gi  173 (360)
                      -+..++.+.+...+.++...+++|+++| ++|+.+.|.|.+++++.  ++.|.++|.+...   .     -..+.+.+++
T Consensus         7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295         7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            3456777777777777778899999999 99999999999999984  4667777766321   0     0144566654


Q ss_pred             C----CCCCceEEEEeCCCcccccCCC-CCCHHHHHHHHH
Q 018164          174 E----ESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCS  208 (360)
Q Consensus       174 ~----~~~p~~~~~~~~~~~~~y~~~~-~~~~~~i~~fi~  208 (360)
                      .    +. |+++++.++....+.  .| ..+.+.|.+|+.
T Consensus        85 ~~~i~~~-PT~v~~k~Gk~v~~~--~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        85 PTSFMGT-PTFVHITDGKQVSVR--CGSSTTAQELQDIAA  121 (122)
T ss_pred             cccCCCC-CEEEEEeCCeEEEEE--eCCCCCHHHHHHHhh
Confidence            4    46 999655554433333  45 567999988864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.26  E-value=6.8e-06  Score=70.96  Aligned_cols=110  Identities=23%  Similarity=0.332  Sum_probs=77.2

Q ss_pred             CCceEEEcC-ccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCc
Q 018164          229 NANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~P  304 (360)
                      -+.|..++. ..|-+.+....  ..|+|+||.+.+..|..|...|..||.++.   .++|++|..+.- .++.|.+..+|
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~~~~~f~~~~LP  200 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCPASENFPDKNLP  200 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCCTTTTS-TTC-S
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccCcccCCcccCCC
Confidence            467888864 77888774433  368999999999999999999999999997   589999998764 45688999999


Q ss_pred             EEEEEeCCCccCc-eEec---C-CCCHHHHHHHHHHhcCCCC
Q 018164          305 TLLFYPAGDKANP-IKVS---A-RSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       305 ti~~~~~g~~~~~-~~~~---g-~~~~~~l~~~i~~~~~~~~  341 (360)
                      ||++|++|..+.- +.+.   | ..+...|..||.++--.+.
T Consensus       201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~  242 (265)
T PF02114_consen  201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPE  242 (265)
T ss_dssp             EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS-
T ss_pred             EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCC
Confidence            9999999976521 2221   2 5777899999987765443

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.25  E-value=5.5e-05  Score=73.40  Aligned_cols=186  Identities=8%  Similarity=0.008  Sum_probs=130.6

Q ss_pred             HHHHHHhhh--CCeEEEEEecCCC---CccHHHHHHHHhcCCCceEEE---eccHHHHHHcCCCCCCCCCEEEEEecCC-
Q 018164            7 NEAEEFLKK--YQTFVLGMFKKFE---GSDYEEFVKTAAADNEIQFVE---TSNFEVAKVLYPDIKSTDHFLGIVKSEP-   77 (360)
Q Consensus         7 ~~~~~~~~~--~~~~vv~ff~~~~---~~~~~~f~~~a~~~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~~~~~~~-   77 (360)
                      ++|+.++..  +++.++.|..+.+   .+..+..+++|.+.+.+++-.   .++++++++|+++   ..|++.+++..+ 
T Consensus       355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~---~~P~~~i~~~~~~  431 (555)
T TIGR03143       355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKIT---KLPTVALLDDDGN  431 (555)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCC---cCCEEEEEeCCCc
Confidence            556666663  5677777776543   244556667888888888754   3567889999997   679999996433 


Q ss_pred             CCccccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCceEE-EEEEec-cchHHHHHHHHHHHHhhcCceE
Q 018164           78 DRYTGYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKLQV-YVFAKA-DDLKSLLEPLEDIARNFKGKIM  152 (360)
Q Consensus        78 ~~~~~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~v-~f~~~~-~~~~~~~~~~~~la~~~~~~i~  152 (360)
                      ...+.|.|--.=.++..||..   .+-+ -..++++..+.+-.-+.+..+ +|+.++ +.|.+....+.++|.... +|.
T Consensus       432 ~~~i~f~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~  509 (555)
T TIGR03143       432 YTGLKFHGVPSGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVE  509 (555)
T ss_pred             ccceEEEecCccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-Cce
Confidence            334677764444567777653   2323 235677666666555566545 456777 999999999999999977 499


Q ss_pred             EEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          153 FTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       153 f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      .-.+|...++   .+++.|+|... |+++  .+..    ..+.|..+.+.|..|+
T Consensus       510 ~~~i~~~~~~---~~~~~~~v~~v-P~~~--i~~~----~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       510 AEMIDVSHFP---DLKDEYGIMSV-PAIV--VDDQ----QVYFGKKTIEEMLELI  554 (555)
T ss_pred             EEEEECcccH---HHHHhCCceec-CEEE--ECCE----EEEeeCCCHHHHHHhh
Confidence            9999999886   99999999998 8883  3321    2235778998888876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.24  E-value=1e-05  Score=61.64  Aligned_cols=105  Identities=8%  Similarity=0.075  Sum_probs=78.0

Q ss_pred             ccCCceeecCcccccccccCCCceEEEEEEec----cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCC
Q 018164           99 NKFPLVTKLTDINSASVHSSPIKLQVYVFAKA----DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus        99 ~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~----~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      +..|.+..   .+++.+...+.. .++|+...    ..+....-.+.+++++|.+ ++.|+.||.+.++   .++..|||
T Consensus        17 ~g~~~~~~---~~~~~~~~~~~~-~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~LA~~fgV   89 (132)
T PRK11509         17 RGWTPVSE---SRLDDWLTQAPD-GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFGV   89 (132)
T ss_pred             cCCCcccc---ccHHHHHhCCCc-EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---HHHHHcCC
Confidence            45665544   667777655543 45555543    4456677789999999984 5999999999886   99999999


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      .+. |+++++.+++....+  .|-.+.+.+.+||..++..
T Consensus        90 ~si-PTLl~FkdGk~v~~i--~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         90 FRF-PATLVFTGGNYRGVL--NGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             ccC-CEEEEEECCEEEEEE--eCcCCHHHHHHHHHHHhcC
Confidence            999 999655554433333  6888999999999999864

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.22  E-value=1.3e-05  Score=68.01  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC-----CC----C------C---
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----L------Q---  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~-----~~----~------~---  299 (360)
                      .+++++|.||++||+.|....|.+.++.+++++. ++.+.-|+++.       .  ++     .+    +      .   
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            3589999999999999999999999999999763 57777777531       0  00     00    1      1   


Q ss_pred             ---------------------CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          300 ---------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       300 ---------------------i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                                           +...|+.+++..++++ ..+|.|..+.+.|.+.|++.+.
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV-v~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV-VERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE-EEEECCCCCHHHHHHHHHHHhc
Confidence                                 1224788888555554 3578899999999999988764

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.22  E-value=4.5e-06  Score=64.23  Aligned_cols=43  Identities=28%  Similarity=0.499  Sum_probs=37.2

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      ..++++|+||++||+.|....|.+.++.++++.. ++.+..+..
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence            4689999999999999999999999999999853 677777754

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.18  E-value=1.7e-05  Score=61.04  Aligned_cols=101  Identities=12%  Similarity=0.126  Sum_probs=77.1

Q ss_pred             CccCCHHHHHHHhhhCCeEEEEEecCC-C------CccHHHHHHHH-hcCCC-ceEEEecc---HHHHHHcCCCCCCCCC
Q 018164            1 MRTNTVNEAEEFLKKYQTFVLGMFKKF-E------GSDYEEFVKTA-AADNE-IQFVETSN---FEVAKVLYPDIKSTDH   68 (360)
Q Consensus         1 ~~i~s~~~~~~~~~~~~~~vv~ff~~~-~------~~~~~~f~~~a-~~~~~-~~F~~~~~---~~~~~~~~~~~~~~~p   68 (360)
                      |++++.+.++..=.++.+.+|+|++.. +      ......|.++| ++++. +.|+.+..   ..+.+.+|+.. .+.|
T Consensus         5 ~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~-~~~P   83 (130)
T cd02983           5 IELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG-FGYP   83 (130)
T ss_pred             EEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc-cCCC
Confidence            467788888777777889999999753 1      14577899999 77788 89988543   34888999862 2689


Q ss_pred             EEEEEecCCCCccccCCCCChHHHHHHHhhccCC
Q 018164           69 FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFP  102 (360)
Q Consensus        69 ~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p  102 (360)
                      ++++++..+.++..+.|+++.++|.+|+......
T Consensus        84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G  117 (130)
T cd02983          84 AMVAINFRKMKFATLKGSFSEDGINEFLRELSYG  117 (130)
T ss_pred             EEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence            9999998544444478999999999999975544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.15  E-value=1.6e-05  Score=65.81  Aligned_cols=85  Identities=15%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe-------------CC------CCCC-CCCCCCCCcEE
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-------------AS------ANEH-PKLQVEEYPTL  306 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id-------------~~------~~~~-~~~~i~~~Pti  306 (360)
                      .+++++|+||++||+.|+...|.+.++.+....  ++.++..|             .+      ..++ ..+++...|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            467899999999999999999999998766432  45444321             00      0011 24588899999


Q ss_pred             EEEeCCCccCceEecCC-CCHHHHHHHHHHh
Q 018164          307 LFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ  336 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~  336 (360)
                      +++..++++   .+.|. .+.+.+.+.++..
T Consensus       151 ~lID~~G~I---~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       151 VLLDQDGKI---RAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             EEECCCCeE---EEccCCCCHHHHHHHHHHH
Confidence            888654443   45554 4556666666543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.14  E-value=8.4e-06  Score=67.87  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=65.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CCC----CCCC-------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EHP----KLQV-------------  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~~----~~~i-------------  300 (360)
                      ..++++|.||++||+.|....|.+.++.+++++. ++.+..++++.       +  ++.    ++++             
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~  116 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE  116 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence            3679999999999999999999999999999763 58888887631       1  111    1111             


Q ss_pred             -----------------------CCCc---EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          301 -----------------------EEYP---TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       301 -----------------------~~~P---ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                                             ..+|   +.+++.+.+.+ ..++.|..+.+.|.+.|.+.++.++
T Consensus       117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~i-v~~~~g~~~~~~l~~~I~~ll~~~~  182 (199)
T PTZ00056        117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNV-VAYFSPRTEPLELEKKIAELLGVKD  182 (199)
T ss_pred             ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcE-EEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                                   1122   45566444343 2477888899999999998887553

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.09  E-value=1.2e-05  Score=60.47  Aligned_cols=64  Identities=14%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             CCceEEEEEE-------ec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc----cchhHHhhcCCC-CCCCceEEE
Q 018164          119 PIKLQVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----LAKPFLTLFGLE-ESKNTVVTA  183 (360)
Q Consensus       119 ~~~~~v~f~~-------~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~----~~~~l~~~~gi~-~~~p~~~~~  183 (360)
                      +.+.+|.|++       +| ++|+.+.+.+++++.++.+++.|+.||.+..+    -+.++...++|. +. |+++++
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~i-PT~~~~   97 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGV-PTLLRW   97 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCC-CEEEEE
Confidence            5688999999       89 99999999999999999977999999987521    013778889998 77 999655

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.8e-05  Score=65.58  Aligned_cols=102  Identities=17%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             eeecCcccccccccC-C-CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          104 VTKLTDINSASVHSS-P-IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       104 v~~l~~~~~~~~~~~-~-~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      +..-++..|..-++. + +-++|-|++.| ++|+.+.|.|..+|.+|++ ..|..||.++..   ..+..+||+.. ||+
T Consensus         4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~gV~am-PTF   78 (288)
T KOG0908|consen    4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNGVNAM-PTF   78 (288)
T ss_pred             EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcCcccC-ceE
Confidence            333444455554433 2 35678899999 9999999999999999986 899999998774   88889999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +.+.+..   +...-...+...|+.-|..|.+.
T Consensus        79 iff~ng~---kid~~qGAd~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   79 IFFRNGV---KIDQIQGADASGLEEKVAKYAST  108 (288)
T ss_pred             EEEecCe---EeeeecCCCHHHHHHHHHHHhcc
Confidence            6555443   33222457888899999888753

>PLN02412 probable glutathione peroxidase

Probab=98.08  E-value=4.3e-05  Score=61.85  Aligned_cols=89  Identities=16%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC-----CC----CC----------
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PK----LQ----------  299 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~-----~~----~~----------  299 (360)
                      .++++|.||++||+.|....|.+.++.+++++. ++.+.-|.++.       .  ++     .+    |.          
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            589999999999999999999999999999864 57777776531       0  11     01    11          


Q ss_pred             --------------------CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          300 --------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       300 --------------------i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                                          +...|+.+++.+++++ ..++.|..+.+.|.+.|.+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~v-v~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKV-VQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcE-EEEECCCCCHHHHHHHHHHHHh
Confidence                                2335788888555454 3477899999999999988765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.07  E-value=0.00013  Score=70.30  Aligned_cols=177  Identities=13%  Similarity=0.107  Sum_probs=117.7

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      .++-+.+|.+. +.|.++...+++++.--. +|.+-..+   .    .       ... |++ .+...+......|.|-.
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~---~----~-------~~~-p~~-~~~~~~~~~~i~f~g~P   81 (517)
T PRK15317         19 RPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDS---L----D-------VRK-PSF-SITRPGEDTGVRFAGIP   81 (517)
T ss_pred             CCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEcc---C----C-------CCC-CEE-EEEcCCccceEEEEecC
Confidence            34545566655 678888888888877654 57663311   1    1       122 776 44443333345557777


Q ss_pred             CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF  277 (360)
Q Consensus       199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~  277 (360)
                      .-.++..||...++-       |.+        -..|+.+..+. +..-+++ -+..|+++.|++|......+.+++..-
T Consensus        82 ~g~Ef~s~i~~i~~~-------~~~--------~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~  145 (517)
T PRK15317         82 MGHEFTSLVLALLQV-------GGH--------PPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN  145 (517)
T ss_pred             ccHHHHHHHHHHHHh-------cCC--------CCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC
Confidence            788899999887641       111        11233333333 2232444 488899999999999999999998753


Q ss_pred             cCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          278 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       278 ~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .   ++..-.+|...+ ++ .++++.++|++++  +|..    .+.|..+.+.|.+.+.+...
T Consensus       146 ~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        146 P---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE----FGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             C---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhcccc
Confidence            2   788999999888 55 4789999999975  5543    58899999999888877554

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.06  E-value=1.6e-05  Score=52.63  Aligned_cols=58  Identities=22%  Similarity=0.558  Sum_probs=47.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-----CCCCCCCCcEEEEEeCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-----PKLQVEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~Pti~~~~~g  312 (360)
                      ++.|+++||++|..+.+.+.++ .....  ++.+..++++...-     ..+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 33333  79999999988732     24588899999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.05  E-value=1.8e-05  Score=62.64  Aligned_cols=77  Identities=16%  Similarity=0.368  Sum_probs=54.9

Q ss_pred             cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCC-
Q 018164          247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVE-  301 (360)
Q Consensus       247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~-  301 (360)
                      ..++++|.||+. ||++|....|.+.++.+.++.. ++.+..+..+.+ .+                      ..+++. 
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            478899999999 9999999999999999887653 455655554333 11                      123666 


Q ss_pred             --------CCcEEEEEeCCCccCceEecCCCC
Q 018164          302 --------EYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       302 --------~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                              ++|+++++.+++++ ...+.|...
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V-~~~~~g~~~  136 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKV-VYRHVGPDP  136 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBE-EEEEESSBT
T ss_pred             ccccccCCeecEEEEEECCCEE-EEEEeCCCC
Confidence                    89999999777675 234445443

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.03  E-value=4.3e-05  Score=62.20  Aligned_cols=90  Identities=12%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---------CC----------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---------EH----------------------  295 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------~~----------------------  295 (360)
                      .+++++|+||++||+.|....+.+.++...+++. ++.+..+..+..         .+                      
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            5688999999999999999999999999999752 688888876431         00                      


Q ss_pred             CCCCCCCCcEEEEEeCCCccCceEec-----------CCCCHHHHHHHHHHhcCCC
Q 018164          296 PKLQVEEYPTLLFYPAGDKANPIKVS-----------ARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       296 ~~~~i~~~Pti~~~~~g~~~~~~~~~-----------g~~~~~~l~~~i~~~~~~~  340 (360)
                      ..+++...|+++++..++++   .|.           +..+.+.+.+-|...+...
T Consensus       103 ~~~~v~~~P~~~lid~~G~v---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  155 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKL---VYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK  155 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeE---EEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence            02367789999999655553   333           2346688888888877654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.01  E-value=1.6e-05  Score=54.58  Aligned_cols=67  Identities=15%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcEEEEEeCCCccCceEecCCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                      +.+|+++||++|..+.+.+.+.        ++.+..+|++.+.-      ..+++.++|++++.  | .    .+.| .+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~----~~~g-~~   65 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K----IIVG-FD   65 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E----EEee-CC
Confidence            5689999999999998877652        57788889887622      13588999999874  3 2    2555 47


Q ss_pred             HHHHHHHHH
Q 018164          326 SKNIAAFIK  334 (360)
Q Consensus       326 ~~~l~~~i~  334 (360)
                      .+.|.++|+
T Consensus        66 ~~~i~~~i~   74 (74)
T TIGR02196        66 PEKLDQLLE   74 (74)
T ss_pred             HHHHHHHhC
Confidence            788888774

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.00  E-value=1.9e-05  Score=54.78  Aligned_cols=68  Identities=18%  Similarity=0.323  Sum_probs=45.7

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-C-----CCCCCCcEEEEEeCCCccCceEecCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K-----LQVEEYPTLLFYPAGDKANPIKVSARS  324 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~-----~~i~~~Pti~~~~~g~~~~~~~~~g~~  324 (360)
                      +++|+++||++|..+++.+.++        .+.+-.+|++.+ ... .     +++.++|++ ++.+|...      ...
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l------~~~   66 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL------TNP   66 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe------cCC
Confidence            5789999999999999988766        244556787766 222 2     377899997 46666332      244


Q ss_pred             CHHHHHHHHH
Q 018164          325 SSKNIAAFIK  334 (360)
Q Consensus       325 ~~~~l~~~i~  334 (360)
                      +..++.+.|.
T Consensus        67 ~~~~~~~~l~   76 (77)
T TIGR02200        67 SAAQVKAKLQ   76 (77)
T ss_pred             CHHHHHHHhh
Confidence            5556655543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.99  E-value=2.7e-05  Score=53.95  Aligned_cols=72  Identities=19%  Similarity=0.404  Sum_probs=53.3

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCcEEEEEeCCCccCceEecC-CCCHHHHH
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIA  330 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~  330 (360)
                      |.+++++|..|..+...+++++..+.    +.+-.+|.... ++.++++.++|++++  +|+    +.+.| ..+.+.|.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~----~~~~G~~p~~~el~   72 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK----VVFVGRVPSKEELK   72 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE----EEEESS--HHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE----EEEEecCCCHHHHH
Confidence            34478899999999999999988883    45555666444 556789999999955  553    47899 88889999


Q ss_pred             HHHH
Q 018164          331 AFIK  334 (360)
Q Consensus       331 ~~i~  334 (360)
                      +||+
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9884

...

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.98  E-value=3.9e-05  Score=54.14  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             ccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC-CCCceEEEEeCCC
Q 018164          110 INSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE-SKNTVVTAFDNKA  188 (360)
Q Consensus       110 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~-~~p~~~~~~~~~~  188 (360)
                      ..|.+++.....++++|..+..+-...+..|.++|+..+|+-++++|||.+.+ .+.+|+.+.+.+ ..|--+.+.+-.+
T Consensus        10 KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKd   88 (112)
T cd03067          10 KDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKD   88 (112)
T ss_pred             HHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccC
Confidence            34566666655555555444466777788999999999999999999999754 579999999982 2122222333332


Q ss_pred             cccc-cCCCCCCHHHHHHHHHH
Q 018164          189 ISKF-LLESDLTPSNIEEFCSR  209 (360)
Q Consensus       189 ~~~y-~~~~~~~~~~i~~fi~~  209 (360)
                      +... .|+-..+..+|.+|+++
T Consensus        89 G~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          89 GDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             CCccccccchhhHHHHHHHhhC
Confidence            2222 23556899999999876

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.98  E-value=2.7e-05  Score=58.56  Aligned_cols=66  Identities=27%  Similarity=0.711  Sum_probs=55.0

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CC-CCCC--CCCCcEEEEEeCCCcc
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQ--VEEYPTLLFYPAGDKA  315 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~-~~~~--i~~~Pti~~~~~g~~~  315 (360)
                      .+++++.||++||++|+.+.|.+.++++.+..  .+.+..+|.. .+ +. ..+.  +..+|++.++.+|...
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  102 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV  102 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence            67888888999999999999999999999986  6888999986 44 33 3456  8889999988887653

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.93  E-value=4e-05  Score=64.43  Aligned_cols=82  Identities=17%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-CCCCCCCCcEEEEEeCCC-cc
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-PKLQVEEYPTLLFYPAGD-KA  315 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-~~~~i~~~Pti~~~~~g~-~~  315 (360)
                      ++-.|++||.+.|+.|..+.|++..+++.+.=  .+..+.+|....          ++ ..+++..+|+++++..+. ..
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~  197 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW  197 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence            66789999999999999999999999999943  455555553211          11 246899999999997765 33


Q ss_pred             CceEecCCCCHHHHHHH
Q 018164          316 NPIKVSARSSSKNIAAF  332 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~  332 (360)
                      .|+ -.|..+.++|.+=
T Consensus       198 ~pv-~~G~~s~~~L~~r  213 (215)
T PF13728_consen  198 YPV-SQGFMSLDELEDR  213 (215)
T ss_pred             EEE-eeecCCHHHHHHh
Confidence            333 3488898888763

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.88  E-value=0.00019  Score=59.02  Aligned_cols=42  Identities=19%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CccE-EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          248 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      .+++ ++.+|++||+.|....|.+.++.+++++. ++.+..+++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~   82 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC   82 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence            5554 45669999999999999999999999763 577777765

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.88  E-value=0.00022  Score=56.81  Aligned_cols=87  Identities=9%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------C-CC----CC-CC--------------
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------N-EH----PK-LQ--------------  299 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--------~-~~----~~-~~--------------  299 (360)
                      .++++|.||++||+.|..-.|.+.++.+.++.. ++.+..+++..        . .+    .+ ++              
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            578999999999999999999999999999753 67787777511        0 01    00 10              


Q ss_pred             ------------CCCCcE----EEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          300 ------------VEEYPT----LLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       300 ------------i~~~Pt----i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                                  ..++|+    .+++.+++++ ...|.|..+.+.|.+.|.+.
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v-~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV-VKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcE-EEEECCCCCHHHHHHHHHHh
Confidence                        113675    5666444443 35788999999988888764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.86  E-value=0.00068  Score=65.32  Aligned_cols=178  Identities=15%  Similarity=0.152  Sum_probs=115.7

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      .+..+.+|.+. +.|+++...+++++..- ++|.+..-+...             ... |++ .+...+......|.|-.
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-------------~~~-p~~-~~~~~~~~~~i~f~g~P   82 (515)
T TIGR03140        19 NPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-------------LRK-PSF-TILRDGADTGIRFAGIP   82 (515)
T ss_pred             CCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-------------CCC-CeE-EEecCCcccceEEEecC
Confidence            34445555555 67888888888877765 457774432110             122 666 44433333344556777


Q ss_pred             CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc-EEEEEeCCCChhhHHHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF  277 (360)
Q Consensus       199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~  277 (360)
                      .-.++..||...++-.       .+        -..|+.+..+.+ ..-+++ -+-.|.++.|++|......+.+++..-
T Consensus        83 ~g~Ef~s~i~~i~~~~-------~~--------~~~l~~~~~~~~-~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~  146 (515)
T TIGR03140        83 GGHEFTSLVLAILQVG-------GH--------GPKLDEGIIDRI-RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN  146 (515)
T ss_pred             CcHHHHHHHHHHHHhc-------CC--------CCCCCHHHHHHH-HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence            7788899998876421       11        112333333333 232344 478899999999999988888888764


Q ss_pred             cCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          278 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       278 ~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .   ++..-.+|...+ ++ .++++.++|++++  +|..    .+.|..+.+.+.+.+.+..+
T Consensus       147 p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~l~~~~~  200 (515)
T TIGR03140       147 P---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE----FHNGRMDLAELLEKLEETAG  200 (515)
T ss_pred             C---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhhccC
Confidence            3   688888898888 55 4789999999976  4543    57899999988887776643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.80  E-value=0.00011  Score=54.88  Aligned_cols=101  Identities=12%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHH---hcCCCCEEEEEEeCCCCCC--CCCCCCC--Cc
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH---FKGLDNLVIAKIDASANEH--PKLQVEE--YP  304 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~---~~~~~~~~~~~id~~~~~~--~~~~i~~--~P  304 (360)
                      |+.++.+|...+. .++.+..++|+++  ..-..+...+.++|+.   +++  ++.|+.+|.+..+.  ..++++.  +|
T Consensus         1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P   75 (111)
T cd03072           1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP   75 (111)
T ss_pred             CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence            4567777887654 6666666666633  3346788999999999   888  79999999988742  3567775  99


Q ss_pred             EEEEEeCCCccCceE-ecCCCCHHHHHHHHHHhcC
Q 018164          305 TLLFYPAGDKANPIK-VSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       305 ti~~~~~g~~~~~~~-~~g~~~~~~l~~~i~~~~~  338 (360)
                      .+.+....... .+. +.+..+.++|.+|+++.+.
T Consensus        76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhc
Confidence            99998765422 233 5689999999999998765

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.79  E-value=0.00043  Score=51.21  Aligned_cols=93  Identities=16%  Similarity=0.259  Sum_probs=67.6

Q ss_pred             HHHHHhhhCCeEEEEEecCC-CCccHHHHHHHH-hc---CCCceEEEe--------ccHHHHHHcCCCCCCCCCEEEEEe
Q 018164            8 EAEEFLKKYQTFVLGMFKKF-EGSDYEEFVKTA-AA---DNEIQFVET--------SNFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         8 ~~~~~~~~~~~~vv~ff~~~-~~~~~~~f~~~a-~~---~~~~~F~~~--------~~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      .+++++...+.++|-|=-.. -++..+.|.++| +.   -+++-++.+        .|.+++++|++.- ..+|.+.+|+
T Consensus        13 tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k-e~fPv~~LF~   91 (126)
T PF07912_consen   13 TFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK-EDFPVIYLFV   91 (126)
T ss_dssp             HHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC-CC-SEEEEEE
T ss_pred             ehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc-ccCCEEEEec
Confidence            35788999999999773211 356778888888 43   477777663        4788999999962 2579999999


Q ss_pred             cCCCCcccc--CCCCChHHHHHHHhhccC
Q 018164           75 SEPDRYTGY--EETFIMDKILQFLNYNKF  101 (360)
Q Consensus        75 ~~~~~~~~y--~g~~~~~~l~~fi~~~~~  101 (360)
                      ...+.++.|  +|+++.+.|.+|++.++-
T Consensus        92 ~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   92 GDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             SSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             CCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence            666778888  799999999999998753

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00032  Score=53.91  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=67.5

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCC-CC-----------------CCCCCCCC
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-EH-----------------PKLQVEEY  303 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~-~~-----------------~~~~i~~~  303 (360)
                      ...++..+++|-++.|..|.++...+   .++-+.+.+  ++.+++++++.. .+                 ..++++++
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence            35578899999999999999998776   456666776  788888887654 11                 13478999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ||+++|...++. .....|.+..+++...++=..+
T Consensus       117 PtfvFfdk~Gk~-Il~lPGY~ppe~Fl~vlkYVa~  150 (182)
T COG2143         117 PTFVFFDKTGKT-ILELPGYMPPEQFLAVLKYVAD  150 (182)
T ss_pred             ceEEEEcCCCCE-EEecCCCCCHHHHHHHHHHHHH
Confidence            999999665442 3455699999988877664443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.76  E-value=0.00036  Score=59.79  Aligned_cols=88  Identities=16%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------CCCCCCCCcEEEEEeCCCc-c
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDK-A  315 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------~~~~i~~~Pti~~~~~g~~-~  315 (360)
                      ++-.|++||.+.|++|.++.|+++.+++.+.-  .+..+.+|.... .+          ..++++.+|++++...+.. .
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            45789999999999999999999999999954  444555554322 21          1457899999999876644 3


Q ss_pred             CceEecCCCCHHHHHHHHHHhcC
Q 018164          316 NPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .|+. .|..+.++|.+-|...++
T Consensus       228 ~pv~-~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       228 SPLA-YGFISQDELKERILNVLT  249 (256)
T ss_pred             EEEe-eccCCHHHHHHHHHHHHh
Confidence            3343 389999999887765544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.70  E-value=8.7e-05  Score=55.66  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHH---HHHhhcCceEEEEEeCCCcc-----------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLED---IARNFKGKIMFTAVDIADED-----------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~---la~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~gi~~~  176 (360)
                      ++.+.+++|+++| +.|+++.+.+..   +...++.++.++.++.....                 ....+.+.+||.++
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            4667889999999 999999888774   56666667888888776431                 01358899999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                       |+++ +.+.++...+.+.|..+.+.|.+++
T Consensus        84 -Pt~~-~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   84 -PTIV-FLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SEEE-ECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             -CEEE-EEcCCCCEEEEecCCCCHHHHHhhC
Confidence             9994 5654433344567889999888764

...

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00023  Score=61.17  Aligned_cols=114  Identities=15%  Similarity=0.324  Sum_probs=86.2

Q ss_pred             CCceEEEcCccccccccccCc--cEEEEEeCC----CChhhHHHHHHHHHHHHHhcCC------CCEEEEEEeCCCC-CC
Q 018164          229 NANVQIVVGKTFDDLVLNSHK--DVLLEVYTP----WCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-EH  295 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~--~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~-~~  295 (360)
                      ...|..+++++|..++...++  .++|+|.|.    .|.-|+....++.-+|..++..      .++-|+.||.++. ++
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            356889999999999976665  478888765    5999999999999999987432      2688999998886 32


Q ss_pred             -CCCCCCCCcEEEEEeC--CCccCceEecC---CCCHHHHHHHHHHhcCCCCC
Q 018164          296 -PKLQVEEYPTLLFYPA--GDKANPIKVSA---RSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       296 -~~~~i~~~Pti~~~~~--g~~~~~~~~~g---~~~~~~l~~~i~~~~~~~~~  342 (360)
                       +.+++.+.|++++|+.  |++.++..+.+   ...+|++.+|+.+.++....
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~  171 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR  171 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence             5679999999999932  33333333332   34489999999999876653

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.69  E-value=0.00047  Score=58.74  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------CCCCCCCCcEEEEEeCCCc-c
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGDK-A  315 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------~~~~i~~~Pti~~~~~g~~-~  315 (360)
                      ++..|++||.+.|++|.++.|+++.+++.+.-  .+.-+.+|.... .+          ..+++..+|++++...+.. .
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            45789999999999999999999999999964  566666665333 22          1458889999999977653 3


Q ss_pred             CceEecCCCCHHHHHHHHHHhcC
Q 018164          316 NPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .|+. .|..+.++|.+-|...++
T Consensus       221 ~pv~-~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        221 RPLS-YGFITQDDLAKRFLNVST  242 (248)
T ss_pred             EEEe-eccCCHHHHHHHHHHHHh
Confidence            3443 388999999887765543

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.68  E-value=0.00012  Score=53.33  Aligned_cols=83  Identities=17%  Similarity=0.334  Sum_probs=61.7

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-CCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      ....+.++|-|+.++|+   .....|.++|..+++  .+.|+.+.-  .++. .+.+. -|++++|+.... .+..|.|.
T Consensus        14 ~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~~-~~~i~l~~~~~~-~~~~y~g~   84 (97)
T cd02981          14 LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKVK-PGSVVLFKPFEE-EPVEYDGE   84 (97)
T ss_pred             hccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCCC-CCceEEeCCccc-CCccCCCC
Confidence            35677888888888877   456789999999987  688876662  2332 34443 499999977533 35789999


Q ss_pred             CCHHHHHHHHHHh
Q 018164          324 SSSKNIAAFIKEQ  336 (360)
Q Consensus       324 ~~~~~l~~~i~~~  336 (360)
                      .+.+.|.+||..+
T Consensus        85 ~~~~~l~~fi~~~   97 (97)
T cd02981          85 FTEESLVEFIKDN   97 (97)
T ss_pred             CCHHHHHHHHHhC
Confidence            9999999999753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.68  E-value=0.00041  Score=65.61  Aligned_cols=104  Identities=7%  Similarity=-0.011  Sum_probs=74.7

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC--------------------
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI--------------------  158 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~--------------------  158 (360)
                      .|.+...+.+.-......+++++|.||++| +.|...++.+.+++++++. .+.|+.|..                    
T Consensus        38 lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~  117 (521)
T PRK14018         38 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLD  117 (521)
T ss_pred             CCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCC
Confidence            555544444443334456778999999999 9999999999999999873 466655432                    


Q ss_pred             --------CCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          159 --------ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       159 --------~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                              +..   ..+.+.|+|... |+.+++ +.++.....+.|..+.+.|..+|+.
T Consensus       118 y~~~pV~~D~~---~~lak~fgV~gi-PTt~II-DkdGkIV~~~~G~~~~eeL~a~Ie~  171 (521)
T PRK14018        118 YPKLPVLTDNG---GTLAQSLNISVY-PSWAII-GKDGDVQRIVKGSISEAQALALIRN  171 (521)
T ss_pred             Ccccceecccc---HHHHHHcCCCCc-CeEEEE-cCCCeEEEEEeCCCCHHHHHHHHHH
Confidence                    111   367889999988 998544 4433444556789999999999984

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.65  E-value=0.00025  Score=57.71  Aligned_cols=85  Identities=13%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHH-hcCCCCEEEEEEeCCC-----------------------------C-CC-
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASA-----------------------------N-EH-  295 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~-----------------------------~-~~-  295 (360)
                      .+.++|.|||.||+.|..-.|.+.+++.+ +.-..--...-||.+.                             + .. 
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            78999999999999999999999999653 3210000002223221                             1 11 


Q ss_pred             CCCCCCCCcEE-EEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          296 PKLQVEEYPTL-LFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       296 ~~~~i~~~Pti-~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ..+++.++|+. +++.+.+++ ...+.|..+.+.+.+.+
T Consensus       139 ~~~gv~~~P~T~fVIDk~GkV-v~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       139 NAWQLNSEDSAIIVLDKTGKV-KFVKEGALSDSDIQTVI  176 (184)
T ss_pred             HhcCCCCCCceEEEECCCCcE-EEEEeCCCCHHHHHHHH
Confidence            13478889887 677665555 45778998888776644

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>TIGR02740 TraF-like TraF-like protein

Probab=97.62  E-value=0.00043  Score=60.47  Aligned_cols=93  Identities=8%  Similarity=-0.052  Sum_probs=65.8

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------cchhHHhhcCCCCCCCceEEEEeCCCccc
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------LAKPFLTLFGLEESKNTVVTAFDNKAISK  191 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~gi~~~~p~~~~~~~~~~~~~  191 (360)
                      +.+.++.||++| +.|+...+.++++++++.-.+..+.+|....+      ....+.+.+||... |+++++..+++...
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v-Ptl~Lv~~~~~~v~  244 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV-PAVFLADPDPNQFT  244 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC-CeEEEEECCCCEEE
Confidence            456788999999 99999999999999999745555555553210      01367889999988 99964443232222


Q ss_pred             ccCCCCCCHHHHHHHHHHHhc
Q 018164          192 FLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       192 y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ....|..+.+.|.+.+.....
T Consensus       245 ~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       245 PIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEeCCCCHHHHHHHHHHHhc
Confidence            223578899999999887653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.61  E-value=0.00037  Score=49.41  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=54.8

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----CC---CCCCCCCcEEEEEeCCCccCceEecC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HP---KLQVEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~---~~~i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      -+++|+.+||++|......+++++..+.   ++.+..+|++.+.     +.   ..+..++|+++  -+|+.+      |
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------g   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------G   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE------c
Confidence            4678999999999999999999987653   5778888887652     22   12357899985  356432      2


Q ss_pred             CCCHHHHHHHHHHhcC
Q 018164          323 RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~~  338 (360)
                        ..++|.++++++++
T Consensus        71 --g~~~~~~~~~~~~~   84 (85)
T PRK11200         71 --GCTDFEAYVKENLG   84 (85)
T ss_pred             --CHHHHHHHHHHhcc
Confidence              45788888887765

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00031  Score=57.67  Aligned_cols=170  Identities=16%  Similarity=0.177  Sum_probs=102.8

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES  196 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~  196 (360)
                      .....++.|++.| ..|.++...+..+|+.+ .++.|+.++.+.++   .++..+.+... |....++......+.  .+
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~---eis~~~~v~~v-p~~~~~~~~~~v~~l--~~   88 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP---EISNLIAVEAV-PYFVFFFLGEKVDRL--SG   88 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh---HHHHHHHHhcC-ceeeeeecchhhhhh--hc
Confidence            4455678899999 99999999999999999 56999999999887   89999999877 777544444333332  23


Q ss_pred             CC---CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcC--c-cccccc--cccCccEEEEE----eCCCChhhH
Q 018164          197 DL---TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG--K-TFDDLV--LNSHKDVLLEV----YTPWCVTCE  264 (360)
Q Consensus       197 ~~---~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~--~-~~~~~~--~~~~~~~~v~f----~~~~c~~c~  264 (360)
                      ..   ....+..+.....     ......+.+     .++....  + ..+..+  .-+.++++++.    -.|.||..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~  158 (227)
T KOG0911|consen   89 ADPPFLVSKVEKLAESGS-----ASLGMGLST-----TIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSR  158 (227)
T ss_pred             cCcHHHHHHHHHhhhhcc-----cccCCCCCc-----chhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccH
Confidence            22   2223333333321     000000001     1111000  0 122222  12455666655    467899999


Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCCc
Q 018164          265 TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       265 ~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~~  314 (360)
                      ++..+++..        ++.+...|+..+ ++.    .| ...++|.+  |-+|.-
T Consensus       159 ~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQl--yI~GEF  204 (227)
T KOG0911|consen  159 QLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQL--YVKGEF  204 (227)
T ss_pred             HHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccce--eECCEe
Confidence            988777766        577999999988 553    22 44556665  556643

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.56  E-value=0.00017  Score=57.40  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      .++++|.||++||+ |....|.+.++.+++++. ++.+..+.+
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~   62 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC   62 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence            68999999999999 999999999999999753 677777764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.56  E-value=0.00034  Score=52.63  Aligned_cols=91  Identities=9%  Similarity=0.051  Sum_probs=65.5

Q ss_pred             cccCccEEEEEeCC----CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC---C-CCCCCCCcEEEEEe--CCCc
Q 018164          245 LNSHKDVLLEVYTP----WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH---P-KLQVEEYPTLLFYP--AGDK  314 (360)
Q Consensus       245 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~-~~~i~~~Pti~~~~--~g~~  314 (360)
                      ..+.|.++|++|++    ||..|+.... =.++.+.++.  ++.+...|++..+-   . .+++.+||++.++.  +++.
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~   90 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM   90 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence            35678999999999    8888866431 1345555655  78899999987742   2 56999999999882  2222


Q ss_pred             cCceEecCCCCHHHHHHHHHHhcC
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .-.-+..|.+++++|+..|.....
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHh
Confidence            112368899999999999887653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=97.54  E-value=0.001  Score=54.10  Aligned_cols=91  Identities=11%  Similarity=0.265  Sum_probs=68.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc-------------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~gi~~~  176 (360)
                      .+.++++.|+++| +.|....+.+.++++++.+. +.++.++++...                   ....+++.||+...
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            3567889999999 99999999999999999864 888888765321                   12367889999887


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                       |..++ .+.++.....+.|..+.+.+.+++++.
T Consensus       140 -P~~~l-id~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 -PTTFL-IDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             -CeEEE-ECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence             88754 444333344457889999999988764

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.54  E-value=0.00066  Score=48.08  Aligned_cols=97  Identities=11%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCC--ccHHHHHHHH-hcCCCceEEEe-----ccHHHHHHcCCCCCCCCCEEEEE
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEG--SDYEEFVKTA-AADNEIQFVET-----SNFEVAKVLYPDIKSTDHFLGIV   73 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~--~~~~~f~~~a-~~~~~~~F~~~-----~~~~~~~~~~~~~~~~~p~i~~~   73 (360)
                      .|.+..+++++++.++.++|.|..+..+  +..+.|.++| ...+-=+...+     ....+|+++.+.+..+...+.+.
T Consensus         5 ~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk   84 (112)
T cd03067           5 DISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK   84 (112)
T ss_pred             cccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence            4788899999999999899988876654  6788999999 55543333332     24569999998633232224455


Q ss_pred             ecCCCCcc-ccCCCCChHHHHHHHhh
Q 018164           74 KSEPDRYT-GYEETFIMDKILQFLNY   98 (360)
Q Consensus        74 ~~~~~~~~-~y~g~~~~~~l~~fi~~   98 (360)
                      +..|+.++ .|+-..+..+|..|+..
T Consensus        85 HYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          85 HYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cccCCCccccccchhhHHHHHHHhhC
Confidence            54455554 67878899999999875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=97.53  E-value=0.00041  Score=46.60  Aligned_cols=54  Identities=13%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +.+|+.+| +.|+.+.+.+.+++..+. ++.|..+|.+..+   .+.+.+|+.+. |+++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~---~l~~~~~i~~v-Pti~   57 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFP---DLADEYGVMSV-PAIV   57 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCH---hHHHHcCCccc-CEEE
Confidence            56788899 999999999999988764 5999999988775   78999999888 9873

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.52  E-value=0.00013  Score=51.50  Aligned_cols=55  Identities=16%  Similarity=0.338  Sum_probs=39.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC------CC-CCCCCCCcEEEEEeCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------HP-KLQVEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------~~-~~~i~~~Pti~~~~~g  312 (360)
                      +++|+++||++|..+.+.+.+++  ...  .+.+..+|.+.+.      +. ..++.++|+++  -+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g   62 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--ING   62 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECC
Confidence            47899999999999999999886  322  4677777765442      21 23778999984  355

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.51  E-value=0.0016  Score=51.61  Aligned_cols=90  Identities=8%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC---cc----cchhHH-hhc---CCCCCCCceEEEEeC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD---ED----LAKPFL-TLF---GLEESKNTVVTAFDN  186 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~---~~----~~~~l~-~~~---gi~~~~p~~~~~~~~  186 (360)
                      ....++.||++| +.|++..|.+.+++++++-.+..+.+|...   ++    ...... ..+   ++... |+.+ +.+.
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i-PTt~-LID~  127 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT-PATF-LVNV  127 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC-CeEE-EEeC
Confidence            344589999999 999999999999999985444444455321   00    001222 344   67777 8885 5554


Q ss_pred             CCcc-cccCCCCCCHHHHHHHHHHH
Q 018164          187 KAIS-KFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       187 ~~~~-~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +++. .....|..+.+.+.+.+...
T Consensus       128 ~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       128 NTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCEEEEEeecccCHHHHHHHHHHh
Confidence            4333 22457889999988888765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.49  E-value=0.0016  Score=46.62  Aligned_cols=106  Identities=19%  Similarity=0.309  Sum_probs=73.1

Q ss_pred             CceeecCcccccccccCCC-ceEEEEEEec--cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhHH----hhcC
Q 018164          102 PLVTKLTDINSASVHSSPI-KLQVYVFAKA--DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFL----TLFG  172 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~-~~~v~f~~~~--~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~----~~~g  172 (360)
                      |..+.++++++..+..... ...+..|+..  .+..++...++++|+++..  ++.|++||.+.++   -+.    +-||
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~   77 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFG   77 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcC
Confidence            3455666666555443322 3445566655  7788899999999999984  6999999999986   332    4678


Q ss_pred             CCCCCCceEEEEeCCCcc--cccCCCC---CCHHHHHHHHHHHh
Q 018164          173 LEESKNTVVTAFDNKAIS--KFLLESD---LTPSNIEEFCSRLL  211 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~--~y~~~~~---~~~~~i~~fi~~~~  211 (360)
                      |.-..|++ .+.+.....  -+.+.+.   .+.+.|..||++++
T Consensus        78 IDl~~PqI-GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          78 IDLFRPQI-GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             cccCCCce-eeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            88665777 566655433  4444333   68999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.47  E-value=0.0069  Score=58.48  Aligned_cols=181  Identities=11%  Similarity=0.011  Sum_probs=121.8

Q ss_pred             HHHHHHHhh--hCCeEEEEEecCC--CCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            6 VNEAEEFLK--KYQTFVLGMFKKF--EGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         6 ~~~~~~~~~--~~~~~vv~ff~~~--~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      .++|+.+++  ++++.++.|..+.  +.+..+...++|++.+.+++-.....        .   ..|++.+.+.+....+
T Consensus         7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------~---~~p~~~~~~~~~~~~i   75 (517)
T PRK15317          7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------V---RKPSFSITRPGEDTGV   75 (517)
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------C---CCCEEEEEcCCccceE
Confidence            466776666  3667776665421  12445555677788888888553321        1   2599999875545557


Q ss_pred             ccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEE
Q 018164           82 GYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV  156 (360)
Q Consensus        82 ~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~v  156 (360)
                      .|.|--.=.++..||..   .+-| =..++++..+.+-.-..|. +.+|+.+. +.|......+.++|.... +|.+-.+
T Consensus        76 ~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~i  153 (517)
T PRK15317         76 RFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMI  153 (517)
T ss_pred             EEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence            88765455678888763   2333 3356776666665545555 45566666 999999999999999766 5999999


Q ss_pred             eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      |+..++   ++++.|++... |+++  .+..    ..+.|..+.+.+.+.+..
T Consensus       154 d~~~~~---~~~~~~~v~~V-P~~~--i~~~----~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        154 DGALFQ---DEVEARNIMAV-PTVF--LNGE----EFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             EchhCH---hHHHhcCCccc-CEEE--ECCc----EEEecCCCHHHHHHHHhc
Confidence            999887   99999999977 8884  2322    223677777766666654

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.45  E-value=0.00065  Score=50.68  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             EcCccccccccccCccEEEEEe----CCCChhhHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCCC--CCCCCCC--C--C
Q 018164          235 VVGKTFDDLVLNSHKDVLLEVY----TPWCVTCETTSKQIEKLAKHFK-GLDNLVIAKIDASANE--HPKLQVE--E--Y  303 (360)
Q Consensus       235 l~~~~~~~~~~~~~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~--~~~~~i~--~--~  303 (360)
                      ++.+|.....   ..+.++.|+    +..-..-..++..+.++|+.++ +  ++.|+.+|.+...  +..++++  .  +
T Consensus         4 ~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           4 RTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEK   78 (111)
T ss_pred             eccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence            4445555542   334444443    2233445678899999999999 6  7999999998762  3456776  4  9


Q ss_pred             cEEEEEeCCCccCceEecCCC-CHHHHHHHHHHh
Q 018164          304 PTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQ  336 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~-~~~~l~~~i~~~  336 (360)
                      |++.+...+..  .....+.. +.++|.+|+.+.
T Consensus        79 P~~~i~~~~~~--KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          79 PVVAIRTAKGK--KYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CEEEEEeCCCC--ccCCCcccCCHHHHHHHHHHh
Confidence            99999875432  23356778 999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.45  E-value=0.0004  Score=52.06  Aligned_cols=65  Identities=26%  Similarity=0.491  Sum_probs=44.3

Q ss_pred             ccCccEEEEEeC-------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------CC---CCCCCCCCcEEE
Q 018164          246 NSHKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH---PKLQVEEYPTLL  307 (360)
Q Consensus       246 ~~~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------~~---~~~~i~~~Pti~  307 (360)
                      .++++++|+|++       +||+.|....|.+++.-.....  +..++.+.+..-        ..   +.++++++||++
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi   94 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI   94 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence            345788888875       4999999999999998877655  677777776432        11   257999999999


Q ss_pred             EEeCC
Q 018164          308 FYPAG  312 (360)
Q Consensus       308 ~~~~g  312 (360)
                      -+..+
T Consensus        95 ~~~~~   99 (119)
T PF06110_consen   95 RWETG   99 (119)
T ss_dssp             ECTSS
T ss_pred             EECCC
Confidence            99766

; PDB: 1V9W_A 1WOU_A.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=97.41  E-value=0.00027  Score=53.45  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=47.7

Q ss_pred             cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC-CCCceEEEEe
Q 018164          115 VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE-SKNTVVTAFD  185 (360)
Q Consensus       115 ~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~-~~p~~~~~~~  185 (360)
                      ....+++++|.|+++| ++|+.+.+.+.+.+........|+.+|.+..+  ......+++.+ +.|+++ +++
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~-f~~   84 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRIL-FLD   84 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEE-EEC
Confidence            3456778999999999 99999999999987765444556666655432  14456788875 337774 554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.40  E-value=0.0022  Score=48.19  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=69.9

Q ss_pred             cCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC-CCccc
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN-KAISK  191 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~-~~~~~  191 (360)
                      ..+++.+|+|+++| ..|+.+.. .|  .++.+.++....+..+|....+ +..++..+++.++ |+++ +.+. ++...
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~-P~~~-~i~~~~g~~l   91 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY-PHIA-IIDPRTGEVL   91 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC-CeEE-EEeCccCcEe
Confidence            44677888899999 79999876 44  4677777777888888887533 4688999999998 8885 4544 44445


Q ss_pred             ccCCCCCCHHHHHHHHHHHhc
Q 018164          192 FLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       192 y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ..+.|..+.+.+..-++++..
T Consensus        92 ~~~~G~~~~~~f~~~L~~~~~  112 (114)
T cd02958          92 KVWSGNITPEDLLSQLIEFLE  112 (114)
T ss_pred             EEEcCCCCHHHHHHHHHHHHh
Confidence            566899999999888887653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.40  E-value=0.0012  Score=52.94  Aligned_cols=106  Identities=20%  Similarity=0.306  Sum_probs=82.5

Q ss_pred             CCCceEEEcCccccccccccC-c-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcE
Q 018164          228 TNANVQIVVGKTFDDLVLNSH-K-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT  305 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~-~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt  305 (360)
                      .-+.|..+++.+|..-|...+ + -|+|..|...-..|.-+...++.||.+|..   ++|+++-.+. -++.|.-...||
T Consensus        89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~-cIpNYPe~nlPT  164 (240)
T KOG3170|consen   89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATT-CIPNYPESNLPT  164 (240)
T ss_pred             cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEeccccc-ccCCCcccCCCe
Confidence            357899999999988885443 3 467888999999999999999999999974   7888876433 667787788999


Q ss_pred             EEEEeCCCcc----CceEecC-CCCHHHHHHHHHHhc
Q 018164          306 LLFYPAGDKA----NPIKVSA-RSSSKNIAAFIKEQL  337 (360)
Q Consensus       306 i~~~~~g~~~----~~~~~~g-~~~~~~l~~~i~~~~  337 (360)
                      +++|..|...    .+..+.| ..+.+++..++-+.-
T Consensus       165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag  201 (240)
T KOG3170|consen  165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG  201 (240)
T ss_pred             EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence            9999988654    2334445 467788888887654

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.39  E-value=0.0012  Score=45.65  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHH
Q 018164          124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPS  201 (360)
Q Consensus       124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~  201 (360)
                      +.||++| +.|+.+.+.++++++++..++.|..+|  +.    +.+..+|+.+. |+++ + ++.  ..  +.|. .+.+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~----~~a~~~~v~~v-Pti~-i-~G~--~~--~~G~~~~~~   69 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DM----NEILEAGVTAT-PGVA-V-DGE--LV--IMGKIPSKE   69 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CH----HHHHHcCCCcC-CEEE-E-CCE--EE--EEeccCCHH
Confidence            6789999 999999999999999999889998887  22    44677899988 9884 3 322  12  4554 4557


Q ss_pred             HHHHHH
Q 018164          202 NIEEFC  207 (360)
Q Consensus       202 ~i~~fi  207 (360)
                      .|.+++
T Consensus        70 ~l~~~l   75 (76)
T TIGR00412        70 EIKEIL   75 (76)
T ss_pred             HHHHHh
Confidence            777665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.33  E-value=0.00018  Score=55.20  Aligned_cols=63  Identities=21%  Similarity=0.349  Sum_probs=39.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-CCC---CCCCCCcEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-HPK---LQVEEYPTLLFYPAG  312 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~~~---~~i~~~Pti~~~~~g  312 (360)
                      ..+..++.|..+||+.|....|.+.++++...   ++.+-.+..+.+ + ...   .+....|+++++..+
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence            34557888999999999999999999999753   344544444444 2 333   378889999999665

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.32  E-value=0.0016  Score=63.17  Aligned_cols=91  Identities=9%  Similarity=0.124  Sum_probs=68.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc-cchhHHhhcCCCCCCCceEEEEeCCCcc--
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTVVTAFDNKAIS--  190 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~gi~~~~p~~~~~~~~~~~~--  190 (360)
                      .+++++|.|+++| .+|+.+.+..   .++.+.+++ +.++.+|.++.+ -.+.+++.||+.+. |+++ +++.++..  
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~-Pt~~-~~~~~G~~i~  549 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL-PTIL-FFDAQGQEIP  549 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC-CEEE-EECCCCCCcc
Confidence            3578899999999 9999988764   567777864 889999987431 12478899999998 8885 55433222  


Q ss_pred             cccCCCCCCHHHHHHHHHHHh
Q 018164          191 KFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       191 ~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ..++.|..+.+++.+++++..
T Consensus       550 ~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        550 DARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             cccccCCCCHHHHHHHHHHhc
Confidence            355678899999999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.30  E-value=0.017  Score=55.79  Aligned_cols=183  Identities=10%  Similarity=0.015  Sum_probs=120.6

Q ss_pred             HHHHHHHhh--hCCeEEEEEecCC--CCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            6 VNEAEEFLK--KYQTFVLGMFKKF--EGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         6 ~~~~~~~~~--~~~~~vv~ff~~~--~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      .++|+.+++  .+++.++.|..+.  +.+..+...++|++.+.+++-.-..       +..   ..|++.+.+.+....+
T Consensus         7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~-------~~~---~~p~~~~~~~~~~~~i   76 (515)
T TIGR03140         7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTA-------DTL---RKPSFTILRDGADTGI   76 (515)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecC-------CcC---CCCeEEEecCCcccce
Confidence            456666666  3667776665521  1234455557777888888844221       112   3599998865444557


Q ss_pred             ccCCCCChHHHHHHHhh---ccCCceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEE
Q 018164           82 GYEETFIMDKILQFLNY---NKFPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV  156 (360)
Q Consensus        82 ~y~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~v  156 (360)
                      .|.|--.=.++..||..   .+.| -..++++..+.+-.-..+. +.+|+.+. +.|......+.+++.... +|..-.+
T Consensus        77 ~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~i  154 (515)
T TIGR03140        77 RFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMI  154 (515)
T ss_pred             EEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence            78765445677777653   3334 3567777766665545555 44566666 999999999999999987 5898899


Q ss_pred             eCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          157 DIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       157 d~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      |+..++   ++.+.|++... |+++ + +..  ..  +.|..+.+.+.+.+...
T Consensus       155 d~~~~~---~~~~~~~v~~V-P~~~-i-~~~--~~--~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       155 DGALFQ---DEVEALGIQGV-PAVF-L-NGE--EF--HNGRMDLAELLEKLEET  198 (515)
T ss_pred             EchhCH---HHHHhcCCccc-CEEE-E-CCc--EE--EecCCCHHHHHHHHhhc
Confidence            999887   99999999977 8884 3 322  22  36777777766665543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.24  E-value=0.00087  Score=52.38  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCCCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVEEY  303 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~~~  303 (360)
                      +++++|.|| +.||+.|....+.+.++...+++. ++.++.|..+.. .+                      ..+++...
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            678999999 689999999999999999888642 566666654322 11                      11245555


Q ss_pred             ---------cEEEEEeCCCccCceEecCCCCHHHHHH
Q 018164          304 ---------PTLLFYPAGDKANPIKVSARSSSKNIAA  331 (360)
Q Consensus       304 ---------Pti~~~~~g~~~~~~~~~g~~~~~~l~~  331 (360)
                               |+.+++.++.++ ...+.|....+.+.+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v-~~~~~g~~~~~~~~~  137 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKI-VKVWRKVKPKGHAEE  137 (140)
T ss_pred             cccccCCcceeEEEECCCCEE-EEEEecCCccchHHH
Confidence                     888888665554 345667665555544

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.18  E-value=0.0029  Score=47.05  Aligned_cols=67  Identities=16%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc--c------------------cchhHHhhcCCCCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE--D------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~--~------------------~~~~l~~~~gi~~~  176 (360)
                      +++.+++|+..| +.|+...+.+.++.+++. ..+.++.++.+..  +                  ....+.+.||+.+.
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            567889999999 999999999999999996 3588999888763  0                  00267778888777


Q ss_pred             CCceEEEEeCC
Q 018164          177 KNTVVTAFDNK  187 (360)
Q Consensus       177 ~p~~~~~~~~~  187 (360)
                       |.++ +.+.+
T Consensus        99 -P~~~-l~d~~  107 (116)
T cd02966          99 -PTTF-LIDRD  107 (116)
T ss_pred             -ceEE-EECCC
Confidence             7774 44443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>smart00594 UAS UAS domain

Probab=97.14  E-value=0.0049  Score=46.96  Aligned_cols=89  Identities=15%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             cCCCceEEEEEEec-cchHHHHHH-H--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc--
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLEP-L--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS--  190 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~~-~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~--  190 (360)
                      ..++..+|+|+.+| ..|..+... |  .++.+.++.++.+..+|....+ +.+++..+++.++ |+++++...++..  
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~-P~~~~l~~~~g~~~~  102 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF-PYVAIVDPRTGQRVI  102 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC-CEEEEEecCCCceeE
Confidence            35567889999999 889987764 3  4566777767888888877554 5688999999998 9985444333211  


Q ss_pred             --cccCCCCCCHHHHHHHH
Q 018164          191 --KFLLESDLTPSNIEEFC  207 (360)
Q Consensus       191 --~y~~~~~~~~~~i~~fi  207 (360)
                        .....|..+.+.+..++
T Consensus       103 ~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      103 EWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEeccccCCCCHHHHHHhh
Confidence              22347889999888775

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.13  E-value=0.0033  Score=45.38  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCc
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADE  161 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~  161 (360)
                      +++.++.|+++| ++|....+.+.++.++++  +++.|+.|..+..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~   46 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED   46 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            357889999999 899999999999999999  6799998888754

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.13  E-value=0.0024  Score=48.66  Aligned_cols=97  Identities=8%  Similarity=0.001  Sum_probs=62.7

Q ss_pred             cccccccccCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHh--------hcCCCCC
Q 018164          109 DINSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLT--------LFGLEES  176 (360)
Q Consensus       109 ~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~--------~~gi~~~  176 (360)
                      ++.+......+++++|.|+++| ..|+.+.. .|  .++++.+...+.++.+|.++.+   ++.+        .+|+.++
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~---~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP---DVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc---HHHHHHHHHHHHhcCCCCC
Confidence            3445555667888999999999 99999876 34  3677777767999999988654   4433        3577787


Q ss_pred             CCceEEEEeCCCcccccC-----CCCCCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLL-----ESDLTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~-----~~~~~~~~i~~fi~~~  210 (360)
                       |+++ +.+.++...+..     ....+...+..+++.+
T Consensus        82 -Pt~v-fl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          82 -PLNV-FLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             -CEEE-EECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence             8884 555543333221     1123444555555543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.12  E-value=0.0013  Score=52.63  Aligned_cols=101  Identities=20%  Similarity=0.348  Sum_probs=75.4

Q ss_pred             CceEEEc-CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--CCCCCCCCcEE
Q 018164          230 ANVQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pti  306 (360)
                      +....+. ..+|-+.+ ..+..|++.||-|.-..|+-|-..++.||+..-+   ..|++||+..-..  .+++|.-+|++
T Consensus        66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v  141 (211)
T KOG1672|consen   66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTV  141 (211)
T ss_pred             ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeE
Confidence            4455665 46676665 4567789999999999999999999999999875   6899999977633  57899999999


Q ss_pred             EEEeCCCccC-ceEec--C---CCCHHHHHHHHH
Q 018164          307 LFYPAGDKAN-PIKVS--A---RSSSKNIAAFIK  334 (360)
Q Consensus       307 ~~~~~g~~~~-~~~~~--g---~~~~~~l~~~i~  334 (360)
                      .+|.+|.... .+-|.  |   ..+.+.|..-|.
T Consensus       142 ~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~  175 (211)
T KOG1672|consen  142 ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA  175 (211)
T ss_pred             EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence            9999997753 22232  2   344555555544

>PHA02125 thioredoxin-like protein

Probab=97.10  E-value=0.0014  Score=45.21  Aligned_cols=49  Identities=14%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +++|+++| ++|+.+.+.|.+++      +.++.+|++...   .+++.|+|.+. |+++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~v~~~-PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHHIRSL-PTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcCCcee-CeEE
Confidence            57899999 99999999987663      457888887764   89999999999 9984

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.10  E-value=0.0047  Score=50.29  Aligned_cols=87  Identities=14%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC-------------C
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH-------------P  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~  296 (360)
                      .+.++|.|| +.||..|....+.+.++++.+.+. ++.+..|.++..                 .+             .
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            578999999 899999999999999999999653 455655554331                 01             0


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEec----CCCCHHHHHHHHHHh
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKVS----ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~~----g~~~~~~l~~~i~~~  336 (360)
                      .+++.      ..|+.+++.....+. ..+.    ..++.+++.+.|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~-~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIR-HITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence            12443      467898886555542 2332    235678888888765

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.08  E-value=0.0038  Score=50.80  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=62.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--------------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~gi~~~  176 (360)
                      .+++.++.||++| +.|++..+.+.+++++   .+.++.|+.+...                    ....+.+.|++.+.
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            4567889999999 9999999999888764   2555555532110                    01244566777776


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+.+ +.+.++...+.+.|..+.+.+.+++++++.
T Consensus       139 -P~~~-~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       139 -PETF-LVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             -CeEE-EEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence             7664 444444456666788999999999999873

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.05  E-value=0.0025  Score=55.23  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             CCceeecCc-ccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          101 FPLVTKLTD-INSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l~~-~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      +.-|.+++. +.|...+...   ..++|.||.+. ..|..+...|..||.+|.. +.|+.|.+...    .++..|.+..
T Consensus       124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~  198 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN  198 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred             CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence            456677754 5565554332   23567788887 8999999999999999997 99999988754    3567788877


Q ss_pred             CCCceEEEEeCCCcccc-c---C-CCCCCHHHHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKF-L---L-ESDLTPSNIEEFCSRL  210 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y-~---~-~~~~~~~~i~~fi~~~  210 (360)
                      . |++++|.++.-...+ .   + ..+++...|..|+.++
T Consensus       199 L-PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  199 L-PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             --SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             C-CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            7 999777754322211 1   1 2358899999999875

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00088  Score=54.55  Aligned_cols=67  Identities=15%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCC-----CCceEEEEeCCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEES-----KNTVVTAFDNKA  188 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~-----~p~~~~~~~~~~  188 (360)
                      ...|++-||+.| +.|....+.|.+++.+|.. .++|+.||..-++   +....|+|+..     .||++++..+..
T Consensus       144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp---d~a~kfris~s~~srQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP---DVAAKFRISLSPGSRQLPTYILFQKGKE  217 (265)
T ss_pred             ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc---ChHHheeeccCcccccCCeEEEEccchh
Confidence            356899999999 9999999999999999995 4999999999887   88999998822     377755544443

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.02  E-value=0.0015  Score=51.72  Aligned_cols=68  Identities=19%  Similarity=0.438  Sum_probs=44.6

Q ss_pred             cccCccEEEEEeCCCChhhHHHHH-HH--HHHHHHhcCCCCEEEEEEeCCCC-CCCC-C--------CCCCCcEEEEEeC
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSK-QI--EKLAKHFKGLDNLVIAKIDASAN-EHPK-L--------QVEEYPTLLFYPA  311 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~-~~~~-~--------~i~~~Pti~~~~~  311 (360)
                      ...+|+++|.++++||+.|+.|.. .|  .++|..++.  ++.-+++|.+.. ++.. +        +..++|+.++...
T Consensus        34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltP  111 (163)
T PF03190_consen   34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP  111 (163)
T ss_dssp             HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T
T ss_pred             HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECC
Confidence            466899999999999999999875 34  468888876  788899998887 6642 2        5679999998855


Q ss_pred             CCc
Q 018164          312 GDK  314 (360)
Q Consensus       312 g~~  314 (360)
                      ..+
T Consensus       112 dg~  114 (163)
T PF03190_consen  112 DGK  114 (163)
T ss_dssp             TS-
T ss_pred             CCC
Confidence            433

; PDB: 3IRA_A.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.01  E-value=0.0025  Score=48.56  Aligned_cols=46  Identities=22%  Similarity=0.496  Sum_probs=38.7

Q ss_pred             cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      .+++++|.||+. ||+.|....+.+.++...++.. ++.+..+..+..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~   70 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDP   70 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccc
Confidence            468999999999 9999999999999999998753 678877776543

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=97.01  E-value=0.0039  Score=47.81  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEESK  177 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~~  177 (360)
                      +++.+|.||++| +.|.+..+.+.++++++.  +.++.|+.+..                    +.+..+++.||+... 
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~-  101 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV-  101 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC-
Confidence            567889999999 999999999999998873  66665553110                    001256777888877 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHH
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNI  203 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i  203 (360)
                      |+.+ +.+.++...+.+.|.++.+.|
T Consensus       102 P~~~-~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETF-LIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEE-EECCCceEEEEEeccCChHhc
Confidence            7664 444333344555676665543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.0059  Score=44.87  Aligned_cols=62  Identities=18%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             ccEEEEEeC--------CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--------C-CCCC-CCCcEEEEEe
Q 018164          249 KDVLLEVYT--------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--------P-KLQV-EEYPTLLFYP  310 (360)
Q Consensus       249 ~~~~v~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--------~-~~~i-~~~Pti~~~~  310 (360)
                      +-++|+|++        +||+.|....|.+.+.-+....  ++.|+.+++..-..        . ..++ +++||++-|.
T Consensus        26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~  103 (128)
T KOG3425|consen   26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK  103 (128)
T ss_pred             ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence            347777774        5999999999999998886665  79999999876522        1 2244 8999999997


Q ss_pred             CC
Q 018164          311 AG  312 (360)
Q Consensus       311 ~g  312 (360)
                      ++
T Consensus       104 ~~  105 (128)
T KOG3425|consen  104 RQ  105 (128)
T ss_pred             Cc
Confidence            53

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=96.98  E-value=0.0017  Score=50.82  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcCCC--CEEEEEEeCCC
Q 018164          247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLD--NLVIAKIDASA  292 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~~~~~~id~~~  292 (360)
                      ..+.++|.||++||+. |....+.+.++...++...  ++.+..|..+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            4678999999999997 9999999999999997642  47777776654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.95  E-value=0.0022  Score=43.54  Aligned_cols=65  Identities=15%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCC----CCCCCcEEEEEeCCCccCceEecCCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~----~i~~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                      +++|+++||++|..+...+.+.        ++.+..+|++.+ .. ..+    +..++|++++  +| .    ...| .+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~-~----~i~g-~~   65 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD-E----HLSG-FR   65 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC-E----EEec-CC
Confidence            5789999999999988777663        456667777655 22 122    5688999975  33 1    3334 45


Q ss_pred             HHHHHHH
Q 018164          326 SKNIAAF  332 (360)
Q Consensus       326 ~~~l~~~  332 (360)
                      .+.|.++
T Consensus        66 ~~~l~~~   72 (73)
T cd02976          66 PDKLRAL   72 (73)
T ss_pred             HHHHHhh
Confidence            5566554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=96.94  E-value=0.0065  Score=46.17  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC-c-----------------ccchhHHhhcCCCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD-E-----------------DLAKPFLTLFGLEESKN  178 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~-~-----------------~~~~~l~~~~gi~~~~p  178 (360)
                      .+++.++.|+++| +.|....+.+..+++++.  +..+.+|... .                 ..+..+++.|++.+. |
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-P   95 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT-P   95 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc-c
Confidence            4567889999999 999999999999888753  2222222210 0                 001368899999988 8


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHH
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEE  205 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~  205 (360)
                      +++ +.+.++ ..+.+.|..+.+.|.+
T Consensus        96 ~~~-vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          96 AIV-IVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             EEE-EEcCCC-eEEEEeccCCHHHHHh
Confidence            885 444444 6666678888877754

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.91  E-value=0.0071  Score=43.12  Aligned_cols=54  Identities=11%  Similarity=-0.012  Sum_probs=46.5

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +.+|+.+| +.|....+.+.+++..+. ++.+..+|.+..+   .+++.|||.+. |+++
T Consensus        16 i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~---e~a~~~~V~~v-Pt~v   70 (89)
T cd03026          16 FETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQ---DEVEERGIMSV-PAIF   70 (89)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCH---HHHHHcCCccC-CEEE
Confidence            45666677 999999999999998886 4999999998775   89999999998 9984

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.90  E-value=0.002  Score=50.30  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC--CC-------------------------CCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN--EH-------------------------PKL  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~--~~-------------------------~~~  298 (360)
                      .++.+.++|-|.||++|+.+.|.+.++-+.++... .+-++.++-+.+  +.                         ..|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            46899999999999999999999999988886632 244444443332  22                         134


Q ss_pred             CCCCCcEEEEEeCCCc
Q 018164          299 QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       299 ~i~~~Pti~~~~~g~~  314 (360)
                      .+.+.|++++......
T Consensus       112 ~v~~iP~l~i~~~dG~  127 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGT  127 (157)
T ss_pred             ccCcCceeEEecCCCC
Confidence            6889999998865544

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.84  E-value=0.0032  Score=45.85  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=52.6

Q ss_pred             ccCCHHHHHHHhhh--CCeEEEEEecCCCC---ccHHHHHHHHhcCCC-ceEEEec-------cHHHHHHcCCCCCCCCC
Q 018164            2 RTNTVNEAEEFLKK--YQTFVLGMFKKFEG---SDYEEFVKTAAADNE-IQFVETS-------NFEVAKVLYPDIKSTDH   68 (360)
Q Consensus         2 ~i~s~~~~~~~~~~--~~~~vv~ff~~~~~---~~~~~f~~~a~~~~~-~~F~~~~-------~~~~~~~~~~~~~~~~p   68 (360)
                      +|+|.++++++++.  +.+++|.=-+..|+   ...+.|++.+...++ +.++...       +..+|+++||..  ..|
T Consensus         3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eSP   80 (105)
T PF11009_consen    3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ESP   80 (105)
T ss_dssp             E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SS
T ss_pred             ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CCC
Confidence            58899999999998  67777644444464   567788887744443 7777732       456899999974  469


Q ss_pred             EEEEEecCCCCccccCCCCChHHH
Q 018164           69 FLGIVKSEPDRYTGYEETFIMDKI   92 (360)
Q Consensus        69 ~i~~~~~~~~~~~~y~g~~~~~~l   92 (360)
                      .+.+++.+.-....=++.++.+.|
T Consensus        81 Q~ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   81 QVILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred             cEEEEECCEEEEECccccCCHHhc
Confidence            999999754222222356666665

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.77  E-value=0.0034  Score=49.54  Aligned_cols=45  Identities=13%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             CccEEEEE-eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          248 HKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       248 ~~~~~v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      ++.++|.| ++.||+.|....+.+.++...+... ++.++.|..+..
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~   68 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP   68 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence            35555555 5999999999999999999999642 688888876654

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.72  E-value=0.002  Score=42.09  Aligned_cols=49  Identities=16%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~  308 (360)
                      +++|..+||++|......|++.        ++.+..+|++.+ +..    +. +..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            4789999999999988877554        577888888887 332    22 8899999976

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.001  Score=54.69  Aligned_cols=76  Identities=25%  Similarity=0.449  Sum_probs=63.0

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      ...+..++.||++||..|+++...+..+++.+.   ++.+++.+.+.. ++. .+.+...|.+.++..|.++.  +..|.
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~--~l~~~   89 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD--RLSGA   89 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh--hhhcc
Confidence            367789999999999999999999999999993   789999999887 665 56899999999998887764  44554


Q ss_pred             CCH
Q 018164          324 SSS  326 (360)
Q Consensus       324 ~~~  326 (360)
                      ...
T Consensus        90 ~~~   92 (227)
T KOG0911|consen   90 DPP   92 (227)
T ss_pred             CcH
Confidence            443

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.71  E-value=0.0033  Score=51.43  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=36.7

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .++++|.|+|+||+.|.. .+.++++.+++++. ++.+..+.|..
T Consensus        25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq   67 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ   67 (183)
T ss_pred             CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence            689999999999999975 78999999999753 68888888753

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=96.65  E-value=0.0038  Score=49.30  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             ccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          249 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       249 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +.++|.|| ++||+.|....+.+.++++.+++. ++.+..+..+
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d   71 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVD   71 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCC
Confidence            67777777 999999999999999999999642 5667666543

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=96.63  E-value=0.012  Score=42.28  Aligned_cols=89  Identities=19%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             CceEEEEEEec--cchHHHHHHHHHHHHhhcC----------ceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164          120 IKLQVYVFAKA--DDLKSLLEPLEDIARNFKG----------KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK  187 (360)
Q Consensus       120 ~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~----------~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~  187 (360)
                      .|.+++|....  +..+...+.++.+|+++..          .+.|+..|.+-.   ..+-+..|+....|.+ ++.+-.
T Consensus        15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~t---dsLRDf~nL~d~~P~L-viLDip   90 (116)
T cd03071          15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMT---DSLRDYTNLPEAAPLL-TILDMS   90 (116)
T ss_pred             CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHH---HHHHHhcCCCccCceE-EEEecc
Confidence            35566666544  3577788888888877641          144444554433   2445566787664666 677777


Q ss_pred             CcccccCC-CCCCHHHHHHHHHHHhc
Q 018164          188 AISKFLLE-SDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       188 ~~~~y~~~-~~~~~~~i~~fi~~~~~  212 (360)
                      ...+|.+. ..+|.+++.+|+.+|++
T Consensus        91 ~r~~~v~~~eeIT~e~~~~fv~~ylA  116 (116)
T cd03071          91 ARAKYVMDVEEITPAIVEAFVSDFLA  116 (116)
T ss_pred             ccceEeCchHhcCHHHHHHHHHHhhC
Confidence            77888873 46999999999999863

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.62  E-value=0.0056  Score=43.38  Aligned_cols=75  Identities=21%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----CCC-CC--CCCCcEEEEEeCCCccCceEecCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HPK-LQ--VEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~~-~~--i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      +++|..+||++|.++...++++.....   .+.+..+|+..+.     +.. .+  ..++|++++  +|..      -| 
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~------ig-   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH------VG-   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE------ec-
Confidence            678999999999999988888764432   4667777876532     211 13  378999943  5532      12 


Q ss_pred             CCHHHHHHHHHHhcCC
Q 018164          324 SSSKNIAAFIKEQLKE  339 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~~  339 (360)
                       ..++|.+++.++.+.
T Consensus        70 -G~~dl~~~~~~~~~~   84 (86)
T TIGR02183        70 -GCTDFEQLVKENFDI   84 (86)
T ss_pred             -CHHHHHHHHHhcccc
Confidence             347888888876553

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=96.60  E-value=0.019  Score=47.28  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=63.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc--------------------chhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--------------------AKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~--------------------~~~l~~~~gi~~~  176 (360)
                      .+++.++.|+++| +.|.+..+.+.+++++   .+.++.|+.++...                    ...+...||+.+.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            4667889999999 9999999999988753   35666665432110                    0123346777777


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       |+.+ +++.++...+.+.|..+.+.+.++++..+..
T Consensus       144 -P~t~-vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        144 -PETF-LIDGNGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             -CeEE-EECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence             8764 4544444556668899999999999988753

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=96.59  E-value=0.0079  Score=45.01  Aligned_cols=61  Identities=20%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      +++.++.||++| +.|.+..+.++++++++.+++.++.+-....+....+++.+++..+ |.+
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~-p~~   82 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAF-PYV   82 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCC-cEE
Confidence            567889999999 9999999999999999877666665521222112467788888665 544

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=96.53  E-value=0.013  Score=45.21  Aligned_cols=65  Identities=11%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcc---------------------cchhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED---------------------LAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~---------------------~~~~l~~~~g  172 (360)
                      .+++++|.|+++| ..|+...+.+.++++++.+   .+.++.++.+...                     ....+++.||
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3567889999999 9999999999999988864   3555555544221                     0125677899


Q ss_pred             CCCCCCceEEE
Q 018164          173 LEESKNTVVTA  183 (360)
Q Consensus       173 i~~~~p~~~~~  183 (360)
                      +... |+.+++
T Consensus        97 v~~~-P~~~li  106 (131)
T cd03009          97 IEGI-PTLIIL  106 (131)
T ss_pred             CCCC-CEEEEE
Confidence            9888 888544

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.48  E-value=0.0042  Score=43.24  Aligned_cols=55  Identities=11%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC----CCCCCCcEEEEEeCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK----LQVEEYPTLLFYPAG  312 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~----~~i~~~Pti~~~~~g  312 (360)
                      .+..+++|..+||++|...+..|++.        ++.+-.+|++.+ ....    .+..++|.+++  +|
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g   65 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GG   65 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CC
Confidence            44557789999999999998888643        456666787765 2211    26788999953  55

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.48  E-value=0.019  Score=40.10  Aligned_cols=71  Identities=11%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C----CCCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H----PKLQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~----~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      +.+|..+||++|...+..|.+.        ++.|-.+|++.+. .    ...+...+|++++  +| .    .. +..+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~----~~-~Gf~~   66 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L----SW-SGFRP   66 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E----EE-ecCCH
Confidence            6688999999999988777553        5778888888762 2    1236678999965  33 2    12 35678


Q ss_pred             HHHHHHHHHhcC
Q 018164          327 KNIAAFIKEQLK  338 (360)
Q Consensus       327 ~~l~~~i~~~~~  338 (360)
                      +.|.+.+..+..
T Consensus        67 ~~l~~~~~~~~~   78 (81)
T PRK10329         67 DMINRLHPAPHA   78 (81)
T ss_pred             HHHHHHHHhhhh
Confidence            888888876654

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.42  E-value=0.005  Score=43.04  Aligned_cols=53  Identities=11%  Similarity=0.361  Sum_probs=36.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C----CC-CCCCCCcEEEEEeCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H----PK-LQVEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~----~~-~~i~~~Pti~~~~~g  312 (360)
                      +++|+++||++|..+...+.++..      .+.+..++...+.  +    .. .+..++|++  |-+|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g   61 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGG   61 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECC
Confidence            578999999999999999888743      3456666655431  1    11 267788997  4455

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=96.36  E-value=0.035  Score=45.04  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC---ccc-----chhHHhhcCC--CCCCCceEEEEeCCCccc
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD---EDL-----AKPFLTLFGL--EESKNTVVTAFDNKAISK  191 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~---~~~-----~~~l~~~~gi--~~~~p~~~~~~~~~~~~~  191 (360)
                      +|.||++| +.|++..+.++++++++.-.+.-+.+|...   ++.     ...+...||+  ... |+.+ +.+.++...
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-Pttf-LId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTTF-LVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeEE-EEeCCCcEE
Confidence            67899999 999999999999999996333333444321   110     1235567885  355 8885 444443333


Q ss_pred             c-cCCCCCCHHHHHHHHHHHhc
Q 018164          192 F-LLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       192 y-~~~~~~~~~~i~~fi~~~~~  212 (360)
                      + .+.|..+.+.+.+-+...++
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence            3 35789999999888888764

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.34  E-value=0.0065  Score=40.92  Aligned_cols=48  Identities=15%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-CC-C----CCCCCCcEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP-K----LQVEEYPTLL  307 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~~-~----~~i~~~Pti~  307 (360)
                      ++.|+++||++|..++..+.+..        +.+..+|+..+. .. .    .+..++|+++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            56789999999999998888763        566778887763 22 2    2556788774

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.28  E-value=0.022  Score=59.52  Aligned_cols=92  Identities=12%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC---C--c-------------------ccchhHHhhc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA---D--E-------------------DLAKPFLTLF  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~---~--~-------------------~~~~~l~~~~  171 (360)
                      .+++++|.||++| ..|....|.|++++++|+++ +.++.|.+.   .  .                   +....+.+.|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            3567889999999 99999999999999999865 666666321   0  0                   0012566788


Q ss_pred             CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       172 gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++... |+.+ +++.++.....+.|....+.+.++++..+
T Consensus       499 ~V~~i-Pt~i-lid~~G~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSSW-PTFA-VVSPNGKLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCcc-ceEE-EECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence            99888 8885 55443334445678888899999998865

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.26  E-value=0.01  Score=46.50  Aligned_cols=41  Identities=27%  Similarity=0.406  Sum_probs=34.5

Q ss_pred             CccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +++++|.||+.| |.+|....+.+.++.+.+.   ++.++.|..+
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d   67 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD   67 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence            678999999998 6999999999999999874   4667777664

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=96.26  E-value=0.024  Score=43.72  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcc----------------------cchhHHhhc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED----------------------LAKPFLTLF  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~----------------------~~~~l~~~~  171 (360)
                      .++..++.|+++| +.|....+.++++++++++   .+.++.|+.+...                      ....+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            3567889999999 9999999999999998875   3666666544321                      011345668


Q ss_pred             CCCCCCCceEEE
Q 018164          172 GLEESKNTVVTA  183 (360)
Q Consensus       172 gi~~~~p~~~~~  183 (360)
                      |+.+. |+.+++
T Consensus        96 ~v~~i-Pt~~li  106 (132)
T cd02964          96 KVEGI-PTLVVL  106 (132)
T ss_pred             CCCCC-CEEEEE
Confidence            88888 888544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.24  E-value=0.034  Score=40.97  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             cccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC---
Q 018164          111 NSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK---  187 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~---  187 (360)
                      ..+.+.......+|.||....+  .....|.++|..++....|+.....      .+...+++  . |+++++.+..   
T Consensus        10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~-~~ivl~~p~~~~~   78 (104)
T cd03069          10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G-EGVVLFRPPRLSN   78 (104)
T ss_pred             HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C-CceEEEechhhhc
Confidence            3455555555666667755422  3556889999999988999876443      56677887  3 7775553211   


Q ss_pred             --CcccccCCCCCCHHHHHHHHHH
Q 018164          188 --AISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       188 --~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                        ......|.|..+.+.|.+||..
T Consensus        79 k~de~~~~y~g~~~~~~l~~fi~~  102 (104)
T cd03069          79 KFEDSSVKFDGDLDSSKIKKFIRE  102 (104)
T ss_pred             ccCcccccccCcCCHHHHHHHHHh
Confidence              1223446888899999999976

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.21  E-value=0.031  Score=47.04  Aligned_cols=82  Identities=7%  Similarity=0.062  Sum_probs=57.2

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc------ccchhHHhhcCCCCCCCceEEEEeCCCcccccC
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE------DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL  194 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~------~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~  194 (360)
                      -+++||.+. +.|+.+.+.++.++++|.=.|..+.+|+...      .....+.+.+||..+ |+++++..++ ...++.
T Consensus       123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~-Pal~Lv~~~~-~~~~pv  200 (215)
T PF13728_consen  123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT-PALFLVNPNT-KKWYPV  200 (215)
T ss_pred             EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC-CEEEEEECCC-CeEEEE
Confidence            356777777 9999999999999999976677777775310      001378889999887 9986554443 334433


Q ss_pred             -CCCCCHHHHHH
Q 018164          195 -ESDLTPSNIEE  205 (360)
Q Consensus       195 -~~~~~~~~i~~  205 (360)
                       .|-.+.+.|.+
T Consensus       201 ~~G~~s~~~L~~  212 (215)
T PF13728_consen  201 SQGFMSLDELED  212 (215)
T ss_pred             eeecCCHHHHHH
Confidence             57788877754

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.21  E-value=0.023  Score=45.17  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..++++|.||+. ||..|....+.+.++.+.+++. ++.+..|..+
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d   73 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTD   73 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            467899999975 6888999999999999888653 5666666543

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=96.21  E-value=0.01  Score=46.21  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .+++++|.|| +.||..|....+.+.++..+++.. ++.++.+..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4788999999 789999999999999999998532 5667766654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=96.20  E-value=0.015  Score=46.67  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             HHHHHhhccCCceeecC-cccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHh
Q 018164           92 ILQFLNYNKFPLVTKLT-DINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT  169 (360)
Q Consensus        92 l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~  169 (360)
                      -..|+.. ...-+.++. +..|-........+++.||.+. .-|+-+...|..+|+.+-+ ..|+.||+...+   -++.
T Consensus        57 r~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~P---Flv~  131 (211)
T KOG1672|consen   57 RKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAP---FLVT  131 (211)
T ss_pred             HHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCc---eeee
Confidence            3445443 445555555 4445555556667888999998 8999999999999999997 899999999887   7899


Q ss_pred             hcCCCCCCCceEEEEeCCCccccc-C---C--CCCCHHHHHHHHHH
Q 018164          170 LFGLEESKNTVVTAFDNKAISKFL-L---E--SDLTPSNIEEFCSR  209 (360)
Q Consensus       170 ~~gi~~~~p~~~~~~~~~~~~~y~-~---~--~~~~~~~i~~fi~~  209 (360)
                      .++|+-. |++.++.++....++. |   .  .+++.+.|..=+-.
T Consensus       132 kL~IkVL-P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~  176 (211)
T KOG1672|consen  132 KLNIKVL-PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK  176 (211)
T ss_pred             eeeeeEe-eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence            9999988 9986555443222221 2   1  24777777666544

>TIGR03137 AhpC peroxiredoxin

Probab=96.18  E-value=0.0095  Score=49.12  Aligned_cols=86  Identities=10%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------CC-------------CCCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------EH-------------PKLQ  299 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------~~-------------~~~~  299 (360)
                      .+.++|+|| +.||..|....+.+.++...|.+. ++.+..|.++..              .+             ..++
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            568999999 999999999999999999998643 444544443321              01             0224


Q ss_pred             CC------CCcEEEEEeCCCccCceEec-C--CCCHHHHHHHHH
Q 018164          300 VE------EYPTLLFYPAGDKANPIKVS-A--RSSSKNIAAFIK  334 (360)
Q Consensus       300 i~------~~Pti~~~~~g~~~~~~~~~-g--~~~~~~l~~~i~  334 (360)
                      +.      ..|+.+++..++.+....+. .  .++.+++.+.|.
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            43      35889888655454222221 1  468888888775

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.12  E-value=0.011  Score=50.41  Aligned_cols=78  Identities=17%  Similarity=0.331  Sum_probs=53.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe-------------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-------------------------------------  289 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id-------------------------------------  289 (360)
                      +.+.+++.|..|.|++|+++.+.+.++.+.     ++.+..+.                                     
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            456789999999999999999888776431     12211110                                     


Q ss_pred             ---CCCCCC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          290 ---ASANEH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       290 ---~~~~~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                         |.. .+       .+++|++.|+++ +++|..     ..|..+.+.|.++|++.
T Consensus       181 ~~~c~~-~v~~~~~la~~lgi~gTPtiv-~~~G~~-----~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        181 PASCDV-DIADHYALGVQFGVQGTPAIV-LSNGTL-----VPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccccc-hHHHhHHHHHHcCCccccEEE-EcCCeE-----eeCCCCHHHHHHHHHHc
Confidence               111 11       134789999999 666643     47999999999999864

>KOG3414 consensus Component of the U4/U6

Probab=96.10  E-value=0.036  Score=41.17  Aligned_cols=95  Identities=15%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             ccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccC
Q 018164          240 FDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       240 ~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~  316 (360)
                      .++.+ ....+.+++-|-..|.+.|.++-..+..+++.+++  -..++-+|++.- +.. -+.+...|++.+|=+++.. 
T Consensus        14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm-   90 (142)
T KOG3414|consen   14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM-   90 (142)
T ss_pred             HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE-
Confidence            34444 34577899999999999999999999999999987  567777787754 443 3589999999988665554 


Q ss_pred             ceEe--------cC-CCCHHHHHHHHHHhc
Q 018164          317 PIKV--------SA-RSSSKNIAAFIKEQL  337 (360)
Q Consensus       317 ~~~~--------~g-~~~~~~l~~~i~~~~  337 (360)
                      -+.+        ++ -.+.+.+++.|.-.-
T Consensus        91 kiD~gtgdn~Kin~~~~~kq~~Idiie~iy  120 (142)
T KOG3414|consen   91 KIDLGTGDNNKINFAFEDKQEFIDIIETIY  120 (142)
T ss_pred             EEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence            1222        22 245677777776544

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=96.08  E-value=0.014  Score=47.09  Aligned_cols=41  Identities=22%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             CccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .+.++|.||+.| |+.|....+.+.++++.+.   ++.+..+.++
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D   85 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD   85 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence            678999999999 9999999999999998884   4555555543

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.03  E-value=0.078  Score=38.85  Aligned_cols=91  Identities=14%  Similarity=0.125  Sum_probs=58.9

Q ss_pred             Cccccccccc-CCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          108 TDINSASVHS-SPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       108 ~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      +.+..+.+.. .....+|.||....+  .....|.++|..++....|+.....      .+...+++. . |+++++...
T Consensus         7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~~-~-~~i~l~~~~   76 (102)
T cd03066           7 SERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLGLK-M-NEVDFYEPF   76 (102)
T ss_pred             CHHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcCCC-C-CcEEEeCCC
Confidence            3444666666 555566666655422  3455799999999888999775432      556667764 3 677444332


Q ss_pred             CCcccccC-CCCCCHHHHHHHHHH
Q 018164          187 KAISKFLL-ESDLTPSNIEEFCSR  209 (360)
Q Consensus       187 ~~~~~y~~-~~~~~~~~i~~fi~~  209 (360)
                      . .....| .|..+.+.|.+||..
T Consensus        77 ~-e~~~~y~~g~~~~~~l~~fi~~   99 (102)
T cd03066          77 M-EEPVTIPDKPYSEEELVDFVEE   99 (102)
T ss_pred             C-CCCcccCCCCCCHHHHHHHHHH
Confidence            2 333446 678899999999976

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.00  E-value=0.011  Score=43.13  Aligned_cols=55  Identities=13%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC----CCCCCcEEEEEeCCCc
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL----QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~----~i~~~Pti~~~~~g~~  314 (360)
                      .-++.|..+||++|..+...|.+.        ++.+..+|++.. +..    .+    +..++|.+  |-+|..
T Consensus         8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~   71 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL   71 (99)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence            346779999999999988877665        344455666554 211    11    56789998  445633

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=96.00  E-value=0.014  Score=43.23  Aligned_cols=53  Identities=11%  Similarity=0.142  Sum_probs=34.6

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----C----CC-CCCCCCcEEEE
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----H----PK-LQVEEYPTLLF  308 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~----~~-~~i~~~Pti~~  308 (360)
                      -+++|..+||++|......|.+..-...     .+..+|++.++    +    .+ -+..++|++++
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            4778999999999999888877632111     35555666531    1    11 26678999943

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.97  E-value=0.011  Score=40.27  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C-CCC----CCCCCcEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-PKL----QVEEYPTLL  307 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~-~~~----~i~~~Pti~  307 (360)
                      ++.|+.+||++|++.+..|++.        ++.+..+|+..+. . ..+    +...+|+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~   56 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIF   56 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            5678999999999998888763        5677788888763 2 122    556789983

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=95.95  E-value=0.014  Score=39.60  Aligned_cols=64  Identities=11%  Similarity=0.285  Sum_probs=43.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CC----CCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PK----LQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~----~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      +++|..+||+.|.+.+..+++.        ++.+..+|++.+.. ..    .+..++|.+  |-+|..     . |  ..
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~-----i-g--g~   64 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL-----I-G--GS   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE-----E-e--CH
Confidence            6789999999999998777753        46677778777632 11    267789998  345533     1 2  35


Q ss_pred             HHHHHHH
Q 018164          327 KNIAAFI  333 (360)
Q Consensus       327 ~~l~~~i  333 (360)
                      ++|.+|+
T Consensus        65 ~~l~~~l   71 (72)
T cd03029          65 DDLEKYF   71 (72)
T ss_pred             HHHHHHh
Confidence            6666665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.94  E-value=0.013  Score=42.50  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             CccEEEEEe----CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-C----CCCCCCcEEE
Q 018164          248 HKDVLLEVY----TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLL  307 (360)
Q Consensus       248 ~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~----~~i~~~Pti~  307 (360)
                      +.+++|+-.    .|||++|......|.+.        ++.+..+|+..+ ... .    .+..++|.++
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            455665544    38999999998888775        356677888765 322 1    1566889884

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.89  E-value=0.013  Score=40.98  Aligned_cols=78  Identities=18%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l  329 (360)
                      +++|..+.|.-|..+...+..++...    .+.+-.+|++.+ .+ .+|+ ...|.+.+-..+.........+..+.+.|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYG-YRIPVLHIDGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSC-TSTSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhc-CCCCEEEEcCcccccccceeCCCCCHHHH
Confidence            67899999999999988887754332    588999999987 43 4566 36898755321111112356689999999


Q ss_pred             HHHHH
Q 018164          330 AAFIK  334 (360)
Q Consensus       330 ~~~i~  334 (360)
                      .+||+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=95.88  E-value=0.0042  Score=51.39  Aligned_cols=100  Identities=13%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+..++.+|...+...  .++++|+++| +.|..+.++|...|.--.+ .+.++.||.+.++   .+..+|-+... |++
T Consensus        25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---gLsGRF~vtaL-ptI   98 (248)
T KOG0913|consen   25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---GLSGRFLVTAL-PTI   98 (248)
T ss_pred             eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---ccceeeEEEec-ceE
Confidence            6788899998877644  4789999999 9999999999988775554 4889999988665   67677777777 888


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +-..++. -++|  .|.++.+++..|+..-.
T Consensus        99 YHvkDGe-Frry--sgaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen   99 YHVKDGE-FRRY--SGARDKNDFISFEEHRE  126 (248)
T ss_pred             EEeeccc-cccc--cCcccchhHHHHHHhhh
Confidence            6555543 3444  89999999999998743

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=95.86  E-value=0.0086  Score=41.56  Aligned_cols=48  Identities=10%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCC----CCCCCcEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLL  307 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~----~i~~~Pti~  307 (360)
                      +++|..+||++|...+..+++.        ++.+-.+|++.+ .. ..+    +..++|+++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~   54 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF   54 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE
Confidence            3578899999999999888764        355666677665 22 222    567899983

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.86  E-value=0.014  Score=39.69  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C-C---CCCCCCCcEEEE
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-P---KLQVEEYPTLLF  308 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~-~---~~~i~~~Pti~~  308 (360)
                      .+|..++|++|.+.+..|++.        ++.+-.+|++.+. . .   ..+..++|.+++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence            578899999999998888753        5677778888762 2 1   236778999855

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.18  Score=43.95  Aligned_cols=119  Identities=15%  Similarity=0.237  Sum_probs=81.7

Q ss_pred             HHHHHHHhhccCCceeecCcccccccccCC-Cc-eEEEEEEec------cchHHHHHHHHHHHHhhc------C--ceEE
Q 018164           90 DKILQFLNYNKFPLVTKLTDINSASVHSSP-IK-LQVYVFAKA------DDLKSLLEPLEDIARNFK------G--KIMF  153 (360)
Q Consensus        90 ~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~-~~-~~v~f~~~~------~~~~~~~~~~~~la~~~~------~--~i~f  153 (360)
                      +.+.+...--+..-|..++++++.++...+ ++ .++.+|+..      .-|.+...+|+-+|..+.      +  ++-|
T Consensus        28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF  107 (331)
T KOG2603|consen   28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF  107 (331)
T ss_pred             HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence            445555553456678899999999987643 33 234444432      237788889999998887      2  6899


Q ss_pred             EEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccc--cCC---CCCCHHHHHHHHHHHhc
Q 018164          154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF--LLE---SDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y--~~~---~~~~~~~i~~fi~~~~~  212 (360)
                      +.||-++.+   +..+.++++.. |.++.+.+..++.+-  .|+   -...+|++.+|+.+...
T Consensus       108 ~~Vd~~e~p---~~Fq~l~ln~~-P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  108 CMVDYDESP---QVFQQLNLNNV-PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             EEEeccccH---HHHHHhcccCC-CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            999999876   89999999998 998655444332221  121   12459999999999653

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.80  E-value=0.016  Score=41.40  Aligned_cols=56  Identities=20%  Similarity=0.356  Sum_probs=37.2

Q ss_pred             CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----C-CCCCCCcEEEEEeCCC
Q 018164          248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----K-LQVEEYPTLLFYPAGD  313 (360)
Q Consensus       248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~-~~i~~~Pti~~~~~g~  313 (360)
                      +.+++|+-.+    |||++|.+....|++.        ++.+..+|+..+ ++.    + -+..++|.+  |-+|.
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~   72 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE   72 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            4566665543    7999999988877776        356777777665 332    1 166789998  33553

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.76  E-value=0.086  Score=45.39  Aligned_cols=88  Identities=9%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------cchhHHhhcCCCCCCCceEEEEeCCCcccccC-
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------LAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-  194 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-  194 (360)
                      +++||... +.|+++.+.++.++++|.=.+..+.+|+...+      ....+++.+|+..+ |+++++ +.+....++. 
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-Pal~Lv-~~~t~~~~pv~  231 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF-PALYLV-NPKSQKMSPLA  231 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC-ceEEEE-ECCCCcEEEEe
Confidence            56677766 89999999999999999877777778766221      01247789999887 888644 4443444443 


Q ss_pred             CCCCCHHHHHHHHHHHhc
Q 018164          195 ESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       195 ~~~~~~~~i~~fi~~~~~  212 (360)
                      .|-++.+.|.+=+.....
T Consensus       232 ~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       232 YGFISQDELKERILNVLT  249 (256)
T ss_pred             eccCCHHHHHHHHHHHHh
Confidence            577888888776666554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.75  E-value=0.016  Score=39.62  Aligned_cols=52  Identities=13%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CC----CCCC-CCcEEEEEeCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVE-EYPTLLFYPAGD  313 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~----~~i~-~~Pti~~~~~g~  313 (360)
                      +++|..+||++|...+..|++.        ++.+..+|++.+ +. ..    .+.. ++|+++  -+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence            5678899999999988888763        467777888775 22 22    2444 899884  3553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=95.74  E-value=0.19  Score=37.74  Aligned_cols=94  Identities=12%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             cCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc--c
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI--S  190 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~--~  190 (360)
                      +.++..+|+++++. .++..+.. .|  .++.+-+++++.+...|....+ +..++..+++..+ |.++++...+..  -
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~-P~~~~l~~~~~~~~v   92 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY-PFLAMIMLKDNRMTI   92 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC-CEEEEEEecCCceEE
Confidence            34566778888874 44443332 22  4566666677888888988654 5688999999999 998544322221  1


Q ss_pred             cccCCCCCCHHHHHHHHHHHhc
Q 018164          191 KFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       191 ~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ..++.|..+++.+...++.+.+
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHh
Confidence            2345899999999999887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=95.73  E-value=0.19  Score=40.66  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc-------c-------------------cchhHHh
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE-------D-------------------LAKPFLT  169 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~-------~-------------------~~~~l~~  169 (360)
                      .+.+++++|+.+| +.|....+.+.++.++++ .++.|+.+..+..       .                   ..+.+.+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            4556788888888 899999999999999997 3588888766431       0                   0134566


Q ss_pred             hcCCCCCCCceEEEEeCCCcccccC---------CCCCCHHHHHHHHHHHhcCccCC
Q 018164          170 LFGLEESKNTVVTAFDNKAISKFLL---------ESDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       170 ~~gi~~~~p~~~~~~~~~~~~~y~~---------~~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      .||+... |..+ +.+.++...|..         .+..+...+.+-|+..++|.-.+
T Consensus       104 ~~~v~~~-P~~~-lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  158 (171)
T cd02969         104 AYGAACT-PDFF-LFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP  158 (171)
T ss_pred             HcCCCcC-CcEE-EECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence            7788766 7764 555443333321         12346788999999999876443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=95.63  E-value=0.072  Score=41.77  Aligned_cols=43  Identities=12%  Similarity=0.138  Sum_probs=34.6

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--------ceEEEEEeCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--------KIMFTAVDIAD  160 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--------~i~f~~vd~~~  160 (360)
                      .+++++|.|+++| +.|.+..|.+.++.+++++        ++.++.|+.+.
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~   75 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ   75 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC
Confidence            4568889999999 9999999999998876653        37777777663

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.52  E-value=0.12  Score=43.04  Aligned_cols=41  Identities=12%  Similarity=0.059  Sum_probs=35.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      ++++++.|+++| +.|.+..+.+.++.++|.++ +.++.|+++
T Consensus        39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~   81 (199)
T PTZ00056         39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS   81 (199)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence            567888899999 99999999999999999864 888888763

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.45  E-value=0.13  Score=44.00  Aligned_cols=89  Identities=12%  Similarity=0.078  Sum_probs=63.8

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc-c-----chhHHhhcCCCCCCCceEEEEeCCCcccccC-
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-L-----AKPFLTLFGLEESKNTVVTAFDNKAISKFLL-  194 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~-----~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-  194 (360)
                      +++||... +.|.++.+.++.++++|.=.+..+.+|+...+ |     .....+.+|+..+ |.+++ .+.+....++. 
T Consensus       147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-PAl~L-v~~~t~~~~pv~  224 (248)
T PRK13703        147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF-PALML-VDPKSGSVRPLS  224 (248)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc-ceEEE-EECCCCcEEEEe
Confidence            56677766 89999999999999999977888888874321 0     1235678999887 88854 44444444443 


Q ss_pred             CCCCCHHHHHHHHHHHhcC
Q 018164          195 ESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       195 ~~~~~~~~i~~fi~~~~~g  213 (360)
                      .|-++.+.|.+=+.....+
T Consensus       225 ~G~iS~deL~~Ri~~v~t~  243 (248)
T PRK13703        225 YGFITQDDLAKRFLNVSTD  243 (248)
T ss_pred             eccCCHHHHHHHHHHHHhc
Confidence            5778998888777766654

>PRK13190 putative peroxiredoxin; Provisional

Probab=95.44  E-value=0.11  Score=43.43  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             CccEEE-EEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------C--C-------------CC
Q 018164          248 HKDVLL-EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------E--H-------------PK  297 (360)
Q Consensus       248 ~~~~~v-~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------~--~-------------~~  297 (360)
                      ++.++| .|++.||..|..-.+.+.++...|+.. ++.+..+.++..              .  +             ..
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            444544 688999999999999999999998653 455555554421              0  1             01


Q ss_pred             CCCC------CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHHhc
Q 018164          298 LQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQL  337 (360)
Q Consensus       298 ~~i~------~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~~~  337 (360)
                      +++.      .+|+.+++..++++..+. |  .+.++.+++.+.|+...
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            2442      479999997665653222 2  34689999999997654

>PRK10824 glutaredoxin-4; Provisional

Probab=95.39  E-value=0.02  Score=42.81  Aligned_cols=57  Identities=19%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC-C----CCCCCcEEEEEeCCCc
Q 018164          248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK-L----QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~-~----~i~~~Pti~~~~~g~~  314 (360)
                      +.+++|+.-+    |||++|......|..+.        +.+..+|+..+ ++.. +    +..++|.|++  +|..
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~   80 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGEL   80 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence            4556655544    79999999988887762        33444566555 3321 1    5667888744  5544

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=95.38  E-value=0.015  Score=42.67  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      ....++..+++.++ ......+++|.+..  |..|....-++-+|.+.|.+  .+..+.++-... .+ ..+++..+|++
T Consensus        10 g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen   10 GWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             CCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeE
Confidence            45678888999987 44666666665442  34566666788899888987  677777773333 44 36899999999


Q ss_pred             EEEeCCCccCceEecCCC
Q 018164          307 LFYPAGDKANPIKVSARS  324 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~  324 (360)
                      +++++|....  ...|.+
T Consensus        87 vf~R~g~~lG--~i~gi~  102 (107)
T PF07449_consen   87 VFFRDGRYLG--AIEGIR  102 (107)
T ss_dssp             EEEETTEEEE--EEESSS
T ss_pred             EEEECCEEEE--EecCee
Confidence            9999997652  344544

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=95.33  E-value=0.12  Score=39.45  Aligned_cols=41  Identities=12%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI  158 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~  158 (360)
                      .+++.++.||+.| +.|....+.+.++.++++. .+.++.|..
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            4567889999999 9999999999999999985 477776654

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=95.18  E-value=0.095  Score=42.84  Aligned_cols=106  Identities=22%  Similarity=0.349  Sum_probs=80.4

Q ss_pred             CceEEE-cCcccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcE
Q 018164          230 ANVQIV-VGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPT  305 (360)
Q Consensus       230 ~~v~~l-~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pt  305 (360)
                      +.|..+ +++.|-+.+-..  ....+|..|.+.-.-|..+...+.-||..+.   .++|.++-.+.-.. ..|....+|+
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~  214 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPT  214 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCce
Confidence            457777 457788887433  3357888899999999999999999999886   58999998776644 5788899999


Q ss_pred             EEEEeCCCcc-CceEec----CCCCHHHHHHHHHHhcC
Q 018164          306 LLFYPAGDKA-NPIKVS----ARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       306 i~~~~~g~~~-~~~~~~----g~~~~~~l~~~i~~~~~  338 (360)
                      +++|++|.-+ +.++..    .......+..||+++--
T Consensus       215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl  252 (273)
T KOG3171|consen  215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL  252 (273)
T ss_pred             EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence            9999999775 222222    25666788889988643

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=95.13  E-value=0.23  Score=41.03  Aligned_cols=92  Identities=12%  Similarity=0.049  Sum_probs=56.8

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC---------------CcccchhHHhhcCCCCCCCceE
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA---------------DEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~---------------~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      .+++.++.|+++| +.|++..+.+.++.++...++.++..|..               .+.....+.+.||+... |..+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~-P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI-PYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc-ceEE
Confidence            4567888999999 99999999999988776544544432100               00012355667777766 7764


Q ss_pred             EEEeCCCcccccCCCC-CCHHHHHHHHHHHhcC
Q 018164          182 TAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG  213 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g  213 (360)
                       +.+.++.-.+  .|. .+.+.+.+.++....|
T Consensus       152 -lID~~G~I~~--~g~~~~~~~le~ll~~l~~~  181 (189)
T TIGR02661       152 -LLDQDGKIRA--KGLTNTREHLESLLEADREG  181 (189)
T ss_pred             -EECCCCeEEE--ccCCCCHHHHHHHHHHHHcC
Confidence             4444332233  343 3567788888776554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=95.01  E-value=0.28  Score=41.89  Aligned_cols=42  Identities=14%  Similarity=0.059  Sum_probs=36.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|++.| +.|....+.|.++.++|+++ +.++.|+++
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d  141 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN  141 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            3567889999999 99999999999999999864 888888764

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=0.053  Score=37.71  Aligned_cols=49  Identities=14%  Similarity=0.334  Sum_probs=35.8

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C-----CC-CCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P-----KL-QVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~-----~~-~i~~~Pti~~  308 (360)
                      +++|..++|++|+.....|.+.        ++.+..+|++.+..  .     .. +..++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            5678899999999988777733        56777777777642  1     22 5788999865

>PRK10638 glutaredoxin 3; Provisional

Probab=94.86  E-value=0.04  Score=38.63  Aligned_cols=49  Identities=8%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-CC-CC----CCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP-KL----QVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~~-~~----~i~~~Pti~~  308 (360)
                      +++|..+||++|...+..+++.        ++.+..+|++.+. .. .+    +...+|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5678889999999998887764        4566677887662 32 22    5678898843

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.81  E-value=0.066  Score=44.01  Aligned_cols=88  Identities=9%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------------------CC-CCCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------------EH-PKLQ  299 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------------------~~-~~~~  299 (360)
                      .+.++|.|| +.||+.|....+.+.++...|... ++.+..+..+.-                          .+ ..++
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            568899999 999999999999999999998643 455555543331                          11 1224


Q ss_pred             C----CCC--cEEEEEeCCCccCce-Ee--cCCCCHHHHHHHHHHh
Q 018164          300 V----EEY--PTLLFYPAGDKANPI-KV--SARSSSKNIAAFIKEQ  336 (360)
Q Consensus       300 i----~~~--Pti~~~~~g~~~~~~-~~--~g~~~~~~l~~~i~~~  336 (360)
                      +    .+.  |+.+++..++++..+ .+  ...++.+++.+.|...
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            4    245  999999655554222 12  1357899999988643

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=94.74  E-value=0.21  Score=34.25  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=49.7

Q ss_pred             EEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC-CCCHHHHH
Q 018164          127 FAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES-DLTPSNIE  204 (360)
Q Consensus       127 ~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~-~~~~~~i~  204 (360)
                      +.+. +.|..+...+++++..+ + +.+-.+|....+   .+ ..||+... |+++ + ++    +..+.| -.+.+.|.
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~---~~-~~ygv~~v-Palv-I-ng----~~~~~G~~p~~~el~   72 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFE---EI-EKYGVMSV-PALV-I-NG----KVVFVGRVPSKEELK   72 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHH---HH-HHTT-SSS-SEEE-E-TT----EEEEESS--HHHHHH
T ss_pred             eCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHH---HH-HHcCCCCC-CEEE-E-CC----EEEEEecCCCHHHHH
Confidence            6677 89999999999999999 4 777777876553   55 99999998 8883 3 32    233467 57888888


Q ss_pred             HHHH
Q 018164          205 EFCS  208 (360)
Q Consensus       205 ~fi~  208 (360)
                      +|++
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8874

...

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.43  E-value=0.11  Score=40.94  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      +.+.+++.|+.++|++|..+.+.+.++...+.   ++.+...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence            35678999999999999999999998876653   455555544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=94.20  E-value=0.33  Score=35.85  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             CcccccccccCC-CceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          108 TDINSASVHSSP-IKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       108 ~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      +.+.++.+.... ...+|.||....+  .....|.++|..++....|+.....      .+...+++..  |+++++.+.
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~--~~vvl~rp~   76 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP--GQLVVFQPE   76 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC--CceEEECcH
Confidence            333455555444 4555666654422  3456789999999988999776443      5667777753  566444322


Q ss_pred             CC-----cccccCCCC-CCHHH-HHHHHHH
Q 018164          187 KA-----ISKFLLESD-LTPSN-IEEFCSR  209 (360)
Q Consensus       187 ~~-----~~~y~~~~~-~~~~~-i~~fi~~  209 (360)
                      .-     .....|.|. .+.+. |.+|+.+
T Consensus        77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            11     122334666 56655 9999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=94.17  E-value=0.24  Score=31.60  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=41.4

Q ss_pred             EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHH---hhcCCCCCCCceEEEEeC
Q 018164          124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL---TLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~---~~~gi~~~~p~~~~~~~~  186 (360)
                      ++|+..+ +.|.++.+.+.++ ......+.+..++++...   ...   ..+++... |+++ +.+.
T Consensus         2 ~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-P~~~-~~~~   62 (69)
T cd01659           2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV-PTLV-VFGP   62 (69)
T ss_pred             EEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc-cEEE-EEeC
Confidence            5677777 8999999999888 444556999999998764   333   36677776 8874 4443

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=94.04  E-value=0.13  Score=35.92  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             ccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc
Q 018164          116 HSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED  162 (360)
Q Consensus       116 ~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~  162 (360)
                      ...+++.+|+|+++| ..|+.+...+   .++.+.+.+++.++.+|.+..+
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~   64 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED   64 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC
Confidence            346788999999999 9999988876   4566656677999999998654

...

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=93.90  E-value=0.11  Score=37.97  Aligned_cols=89  Identities=13%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-----CCCCC-CCcEEEEE
Q 018164          238 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQVE-EYPTLLFY  309 (360)
Q Consensus       238 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-----~~~i~-~~Pti~~~  309 (360)
                      +.+++++..+ .++++|+=+++.|+-+......|++......+  .+.++.+|+-.+ ++.     +++|. .-|.++++
T Consensus         8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili   85 (105)
T PF11009_consen    8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI   85 (105)
T ss_dssp             HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred             HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence            5566666333 66788877999999999988888888887765  489999998887 542     45765 57999999


Q ss_pred             eCCCccCceEecCCCCHHHH
Q 018164          310 PAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l  329 (360)
                      ++|+-+- -.-.+.++.+.|
T Consensus        86 ~~g~~v~-~aSH~~It~~~l  104 (105)
T PF11009_consen   86 KNGKVVW-HASHWDITAEAL  104 (105)
T ss_dssp             ETTEEEE-EEEGGG-SHHHH
T ss_pred             ECCEEEE-ECccccCCHHhc
Confidence            9996631 011245666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK15000 peroxidase; Provisional

Probab=93.88  E-value=0.13  Score=42.81  Aligned_cols=88  Identities=8%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             cCccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----------------C-------------
Q 018164          247 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------H-------------  295 (360)
Q Consensus       247 ~~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------~-------------  295 (360)
                      ..+.++|+||.. ||..|....+.+.+++..|+.. ++.+..+.++...                 +             
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            467899999994 9999999999999999999753 4555555544210                 0             


Q ss_pred             CCCCCC------CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHH
Q 018164          296 PKLQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKE  335 (360)
Q Consensus       296 ~~~~i~------~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~  335 (360)
                      ..+++.      .+|+.+++...+.+.... +  .-.++.+++.+.|+.
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            012444      589999997555542221 1  125789999998865

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.80  E-value=0.27  Score=42.58  Aligned_cols=35  Identities=11%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      +++++.|++++-.....  +....|....+.|.++|.
T Consensus       215 lGv~GTPaiv~~d~~G~--~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        215 LGANATPAIYYMDKDGT--LQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             cCCCCCCEEEEECCCCC--EEEecCCCCHHHHHHHhC
Confidence            47899999998753222  335779999999988774

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=93.79  E-value=0.33  Score=37.10  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=41.0

Q ss_pred             cccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC
Q 018164          115 VHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA  188 (360)
Q Consensus       115 ~~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~  188 (360)
                      .-..+++++|.|+++| ..|+.+...+   .++++..+..+..+.++.+..+   .-....| ... |++ ++++.++
T Consensus        19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td---~~~~~~g-~~v-Pti-vFld~~g   90 (130)
T cd02960          19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD---KNLSPDG-QYV-PRI-MFVDPSL   90 (130)
T ss_pred             HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC---CCcCccC-ccc-CeE-EEECCCC
Confidence            3456788899999999 9999988864   3455555545555566654221   1111233 233 777 4555543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=93.68  E-value=0.52  Score=34.48  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcC--CCCCCCceEEEEeC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFG--LEESKNTVVTAFDN  186 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~g--i~~~~p~~~~~~~~  186 (360)
                      +.+.++.|+++| +.|..+.+.+.++++++...+.+..+|.. ...   .+...++  +... |+++...+.
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~-p~~~~~~~~   99 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP---DLAAEFGVAVRSI-PTLLLFKDG   99 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh---HHHHHHhhhhccC-CeEEEEeCc
Confidence            445666678899 99999999999999999977899999986 443   7788888  7777 777533333

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=93.60  E-value=0.29  Score=38.92  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=36.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +.+.+++.|+...|++|.++.+.+.++.+.+-+..++.+...+..
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~   55 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP   55 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence            456789999999999999999999999888833337888888763

...

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=93.51  E-value=0.62  Score=35.29  Aligned_cols=93  Identities=14%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             cccccc-cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE-EEeCCCc
Q 018164          239 TFDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL-FYPAGDK  314 (360)
Q Consensus       239 ~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~-~~~~g~~  314 (360)
                      ..++.+ ...++.+++-|-.+|-..|.++-..+.++|.+.++  -..++.+|++.- +.. .+.+. -|..+ +|=+++.
T Consensus        10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh   86 (133)
T PF02966_consen   10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH   86 (133)
T ss_dssp             HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred             hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence            344444 34578899999999999999999999999999987  688899998855 442 34677 67654 4435544


Q ss_pred             cCceEe--------cC-CCCHHHHHHHHHH
Q 018164          315 ANPIKV--------SA-RSSSKNIAAFIKE  335 (360)
Q Consensus       315 ~~~~~~--------~g-~~~~~~l~~~i~~  335 (360)
                      . .+.+        ++ ..+.+++++.|.-
T Consensus        87 m-~vD~GtgnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   87 M-MVDFGTGNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             E-EEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred             E-EEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence            3 1222        22 2445777766654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PLN02412 probable glutathione peroxidase

Probab=93.37  E-value=0.68  Score=37.32  Aligned_cols=41  Identities=15%  Similarity=0.052  Sum_probs=34.6

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      ++++++.|+++| +.|.+..+.++++.++|+++ +.++.|.++
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            466778889999 88998899999999999965 888888764

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=93.33  E-value=1  Score=35.65  Aligned_cols=40  Identities=13%  Similarity=0.007  Sum_probs=34.6

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI  158 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~  158 (360)
                      +++++|.++++| +.|....+.+.++.++|+. .+.++.++|
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            456778899999 9999999999999999985 488888886

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=93.32  E-value=0.47  Score=37.06  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             CCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc
Q 018164          118 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE  161 (360)
Q Consensus       118 ~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~  161 (360)
                      .+++.+|.||.. | +.|....+.+.++++.++.+ +.++.+.....
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~   73 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD   73 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence            456788999999 9 99999999999999997754 77766655533

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=93.05  E-value=0.4  Score=45.70  Aligned_cols=96  Identities=13%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             ccccccCCC--ceEEEEEEec-cchHHHHHH-HH--HHHHhhcCceEEEEEeCCCc-ccchhHHhhcCCCCCCCceEEEE
Q 018164          112 SASVHSSPI--KLQVYVFAKA-DDLKSLLEP-LE--DIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       112 ~~~~~~~~~--~~~v~f~~~~-~~~~~~~~~-~~--~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      .+.....++  |+++-||++| -.|+.+.+. |.  ++..+..+ +....+|.+++ +-.+.+++++|+-+- |++ +++
T Consensus       465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~-P~~-~ff  541 (569)
T COG4232         465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV-PTY-LFF  541 (569)
T ss_pred             HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-CEE-EEE
Confidence            344444444  8889999999 999987763 32  34444444 88889997743 333567899998776 666 566


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +.++...-...|-++.+.+.++++..
T Consensus       542 ~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         542 GPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCCCcCcCCcceecHHHHHHHHHHh
Confidence            65444444467889999999998764

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=0.18  Score=36.89  Aligned_cols=57  Identities=14%  Similarity=0.289  Sum_probs=37.9

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC-----CCCCCcEEEEEeCCCc
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-----QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~-----~i~~~Pti~~~~~g~~  314 (360)
                      .-+|+|..+||..|..+...|..    +..  ...+..+|-..+  +++..     +.+++|.+++  +|+-
T Consensus        14 ~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~   77 (104)
T KOG1752|consen   14 NPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF   77 (104)
T ss_pred             CCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence            34567899999999998877777    333  567777776655  33321     4458888854  5533

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.96  E-value=1.9  Score=33.71  Aligned_cols=93  Identities=12%  Similarity=0.146  Sum_probs=60.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc-------------cchhHHhhcCCCCCCCceE
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED-------------LAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-------------~~~~l~~~~gi~~~~p~~~  181 (360)
                      ++-.+++|=.+. .-|.++...+   .++.+-+.+.+.+++++.....             -.++|++.|+++++ |++ 
T Consensus        42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst-Ptf-  119 (182)
T COG2143          42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST-PTF-  119 (182)
T ss_pred             CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC-ceE-
Confidence            333444444444 7798887765   4456666666777777765331             11488999999999 999 


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      ++++..+...+...|.+..++...-+.=+-.|
T Consensus       120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g  151 (182)
T COG2143         120 VFFDKTGKTILELPGYMPPEQFLAVLKYVADG  151 (182)
T ss_pred             EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            57777655666667888887665544443333

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=92.85  E-value=0.19  Score=41.98  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .+|+.|++.||..|....+.+.+++..|++. ++.+.-+.++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence            3455788999999999999999999999753 56666665543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.67  E-value=0.22  Score=40.37  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=35.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      +.+..++.|+.+.|++|..+.+.+..+.+++.+  ++.+..+....
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~~   57 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVVF   57 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCcc
Confidence            467889999999999999999999999888855  67666555443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=92.59  E-value=2.7  Score=30.53  Aligned_cols=103  Identities=9%  Similarity=0.056  Sum_probs=71.6

Q ss_pred             EEEcCcccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC--C----CCCCC-CCc
Q 018164          233 QIVVGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P----KLQVE-EYP  304 (360)
Q Consensus       233 ~~l~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~-~~P  304 (360)
                      +++...++.+.-. +-++..++-|-.+-...-.++.++++++|+....++++.|+.||-+...+  +    .|+|. .-|
T Consensus         4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P   83 (120)
T cd03074           4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP   83 (120)
T ss_pred             hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence            3444444444332 22567888888888888889999999999999888899999999887733  1    34443 249


Q ss_pred             EEEEEeCCCccCceEec--C---CCCHHHHHHHHHHh
Q 018164          305 TLLFYPAGDKANPIKVS--A---RSSSKNIAAFIKEQ  336 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~--g---~~~~~~l~~~i~~~  336 (360)
                      .|-+..-.... .+-+.  +   ..+++.|..||.+.
T Consensus        84 qIGVV~vtdad-SvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          84 QIGVVNVTDAD-SVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             ceeeEeccccc-ceeEecccccccCcHHHHHHHHHhh
Confidence            99888554442 33333  3   37889999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=92.56  E-value=2.5  Score=30.34  Aligned_cols=75  Identities=9%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             CccE-EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          248 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       248 ~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      .+++ ++.|..+. ..|..+...++++|..-.   ++.+-..+...         ..|++.+..+|... .++|.|-..-
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~~-gIrF~GiP~G   83 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGEDT-GIRFAGIPMG   83 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCcc-cEEEEecCCc
Confidence            4444 44454444 889998888888876542   56554333211         46999998777443 5899999999


Q ss_pred             HHHHHHHHHh
Q 018164          327 KNIAAFIKEQ  336 (360)
Q Consensus       327 ~~l~~~i~~~  336 (360)
                      .++..||...
T Consensus        84 hEf~Slilai   93 (94)
T cd02974          84 HEFTSLVLAL   93 (94)
T ss_pred             hhHHHHHHHh
Confidence            9999888653

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=92.48  E-value=0.29  Score=42.45  Aligned_cols=88  Identities=8%  Similarity=0.097  Sum_probs=57.9

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC-------------C
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH-------------P  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~  296 (360)
                      ++.++++|| +.||..|..-.+.|.++...|++. ++.+.-+.++.-                 .+             .
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            456777777 899999999999999999999653 344444444331                 11             0


Q ss_pred             CCCCC-----CCcEEEEEeCCCccCceE-e--cCCCCHHHHHHHHHHh
Q 018164          297 KLQVE-----EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~-----~~Pti~~~~~g~~~~~~~-~--~g~~~~~~l~~~i~~~  336 (360)
                      .+++.     ..|+.+++..++.+.... +  ...++.+++.+.|...
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            22442     479999997555542222 2  2367999999988643

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=92.23  E-value=0.31  Score=40.56  Aligned_cols=88  Identities=18%  Similarity=0.234  Sum_probs=56.3

Q ss_pred             CccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C----------------C-------------C
Q 018164          248 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E----------------H-------------P  296 (360)
Q Consensus       248 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~----------------~-------------~  296 (360)
                      ++.++|+||. .||..|....+.+.++++.|... ++.+..|.++.. .                +             .
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            5678889994 78999998888999999999754 566666655432 1                0             0


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEe---cCCCCHHHHHHHHHHh
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKV---SARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~---~g~~~~~~l~~~i~~~  336 (360)
                      .+++.      .+|+.+++.....+.....   .-.++.+++++.|...
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            11332      3688888865555422211   1246777888777643

>PRK13599 putative peroxiredoxin; Provisional

Probab=92.14  E-value=0.27  Score=41.44  Aligned_cols=88  Identities=16%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             Ccc-EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------CC-------------CC
Q 018164          248 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------EH-------------PK  297 (360)
Q Consensus       248 ~~~-~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------~~-------------~~  297 (360)
                      ++. +|+.|++.||+.|..-.+.+.+++.+|... ++.+.-+.++..                .+             ..
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            344 467889999999999999999999998643 455555554431                01             01


Q ss_pred             CCC-------CCCcEEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHh
Q 018164          298 LQV-------EEYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       298 ~~i-------~~~Pti~~~~~g~~~~~~~-~~--g~~~~~~l~~~i~~~  336 (360)
                      +++       ...|+++++..++++..+. |.  ..++.+++.+.|...
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            233       2579999997655653332 22  357899999988753

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=92.13  E-value=0.78  Score=30.59  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCccc-chhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP  200 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~  200 (360)
                      +.+|+.+| +.|..+.+.|.+      ..+.+..+|.+..+. ...+++.+|+... |+++ + . +  ..  +.| .+.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~v-P~~~-~-~-~--~~--~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGV-PVIV-I-G-H--KI--IVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcc-cEEE-E-C-C--EE--Eee-CCH
Confidence            35777888 999998877765      237888888875431 1235677888877 8774 3 2 2  22  234 577


Q ss_pred             HHHHHHHH
Q 018164          201 SNIEEFCS  208 (360)
Q Consensus       201 ~~i~~fi~  208 (360)
                      +.|.+|++
T Consensus        67 ~~i~~~i~   74 (74)
T TIGR02196        67 EKLDQLLE   74 (74)
T ss_pred             HHHHHHhC
Confidence            88888763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=91.86  E-value=0.35  Score=34.32  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      +..|+.+.|++|..+.+.+.++.....+  ++.+....+...
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~   40 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLL   40 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccC
Confidence            3679999999999999999999855555  666666655443

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG3414 consensus Component of the U4/U6

Probab=91.81  E-value=2.5  Score=31.68  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=63.4

Q ss_pred             CceEEE-EEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccC-CC
Q 018164          120 IKLQVY-VFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-ES  196 (360)
Q Consensus       120 ~~~~v~-f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~-~~  196 (360)
                      ...+++ |=.+| +.|-++...+.++|....+-..+..+|.++-+   .+.+.|++... |+++.++++.. -+..+ .|
T Consensus        23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~---~~~~~~~l~~p-~tvmfFfn~kH-mkiD~gtg   97 (142)
T KOG3414|consen   23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP---DFVKMYELYDP-PTVMFFFNNKH-MKIDLGTG   97 (142)
T ss_pred             ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh---hhhhhhcccCC-ceEEEEEcCce-EEEeeCCC
Confidence            344444 44455 88999999999999999987777888888765   88999999876 77766665542 22222 22


Q ss_pred             C--------CCHHHHHHHHHHHhcCcc
Q 018164          197 D--------LTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       197 ~--------~~~~~i~~fi~~~~~g~~  215 (360)
                      +        .+.+.+..-++....|..
T Consensus        98 dn~Kin~~~~~kq~~Idiie~iyRga~  124 (142)
T KOG3414|consen   98 DNNKINFAFEDKQEFIDIIETIYRGAR  124 (142)
T ss_pred             CCceEEEEeccHHHHHHHHHHHHHhhh
Confidence            2        356777777777766543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=91.71  E-value=0.27  Score=45.87  Aligned_cols=49  Identities=8%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-C----C---------CCCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P----K---------LQVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~----~---------~~i~~~Pti~~  308 (360)
                      +++|..+||++|......+.+.        ++.+..+|++++.- .    +         .+..++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999988777764        46777788876531 1    1         24568899955

>PRK13191 putative peroxiredoxin; Provisional

Probab=91.67  E-value=0.36  Score=40.69  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=57.8

Q ss_pred             CccEE-EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----------------C-------------CC
Q 018164          248 HKDVL-LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----------------H-------------PK  297 (360)
Q Consensus       248 ~~~~~-v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------------~-------------~~  297 (360)
                      ++.++ +.|++.||..|..-.+.|.+++..|+.. ++.+..+.++...                +             ..
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            44444 4778999999999999999999999653 4555555544321                0             01


Q ss_pred             CCC-------CCCcEEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHh
Q 018164          298 LQV-------EEYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       298 ~~i-------~~~Pti~~~~~g~~~~~~~-~~--g~~~~~~l~~~i~~~  336 (360)
                      +++       ...|+.+++..++.+..+. +.  -.++.+++.+.|+..
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            232       1368888887665653322 22  257999999999754

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=91.29  E-value=2.6  Score=34.44  Aligned_cols=106  Identities=16%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             HhhccCCceeecCcccccc-cccCC-Cce-EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhc
Q 018164           96 LNYNKFPLVTKLTDINSAS-VHSSP-IKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF  171 (360)
Q Consensus        96 i~~~~~p~v~~l~~~~~~~-~~~~~-~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~  171 (360)
                      ...+.+..|.+++-..|.. +...+ ..| +|.+|... ..|.-+...|+.+|.+|+. +.|+.+-+...      ...|
T Consensus        85 ~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c------IpNY  157 (240)
T KOG3170|consen   85 AEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC------IPNY  157 (240)
T ss_pred             HHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc------cCCC
Confidence            4456778888888777654 22222 233 45677766 8899999999999999996 89988765522      1112


Q ss_pred             CCCCCCCceEEEEeCCCccccc----CCCC-CCHHHHHHHHHH
Q 018164          172 GLEESKNTVVTAFDNKAISKFL----LESD-LTPSNIEEFCSR  209 (360)
Q Consensus       172 gi~~~~p~~~~~~~~~~~~~y~----~~~~-~~~~~i~~fi~~  209 (360)
                      -=... ||+++|..+.-...+.    +.|. .+.+.+..++-+
T Consensus       158 Pe~nl-PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  158 PESNL-PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             cccCC-CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            22233 9998777664322221    2333 688888888766

>PRK13189 peroxiredoxin; Provisional

Probab=90.77  E-value=0.5  Score=40.10  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             Cc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------CC-------------CC
Q 018164          248 HK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------EH-------------PK  297 (360)
Q Consensus       248 ~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------~~-------------~~  297 (360)
                      ++ .+|+.|++.||..|....+.+.+++..|+.. ++.+..+.++..                .+             ..
T Consensus        35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            44 4455678999999999999999999999653 455555544321                00             01


Q ss_pred             CCCC-------CCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHHh
Q 018164          298 LQVE-------EYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       298 ~~i~-------~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~~  336 (360)
                      +++.       ..|+.+++...+.+..+.+.   ..++.+++.+.|+..
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            2332       46888998655555333222   467889999998754

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=89.59  E-value=1.2  Score=36.59  Aligned_cols=103  Identities=16%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CceeecCcc-cccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          102 PLVTKLTDI-NSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       102 p~v~~l~~~-~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..|.+++.. .|.+.+...   ...+|.+|.+- ..|+.+...+.=||.+|+. +.|+.+-.+.-    ...+.|..+..
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~----gas~~F~~n~l  212 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT----GASDRFSLNVL  212 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc----cchhhhcccCC
Confidence            456676653 344444332   23456778777 8899999999999999995 99999988765    45677888777


Q ss_pred             CCceEEEEeCCCcccc-----cCCCCCCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKF-----LLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y-----~~~~~~~~~~i~~fi~~~  210 (360)
                       |++.+|..+.-..-|     .+..++....+..|++++
T Consensus       213 -P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  213 -PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             -ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence             998544433211111     112335555666666664

>TIGR02180 GRX_euk Glutaredoxin

Probab=89.25  E-value=1.1  Score=31.05  Aligned_cols=54  Identities=13%  Similarity=0.067  Sum_probs=36.3

Q ss_pred             EEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--cchhHHhhcCCCCCCCce
Q 018164          124 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       124 v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~gi~~~~p~~  180 (360)
                      ++|+.+| +.|.++.+.+.++.  ....+.+..+|.....  ....+.+..|+... |++
T Consensus         2 ~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v-P~v   58 (84)
T TIGR02180         2 VVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV-PNI   58 (84)
T ss_pred             EEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence            6788889 99999999998876  3334667777765332  01124555677776 887

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=88.98  E-value=1.4  Score=34.22  Aligned_cols=54  Identities=9%  Similarity=0.010  Sum_probs=39.3

Q ss_pred             CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCC
Q 018164          119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus       119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      +++.++.||..|  +.|...++.+.++.++++ .+.++.|..+.....+.+.+.+++
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~   81 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGV   81 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCC
Confidence            457788888877  679999999999999997 488888887643211234455554

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=88.94  E-value=0.18  Score=43.96  Aligned_cols=87  Identities=15%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C-CCCCCCCCcEEEEEeCCCccCceEecC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-PKLQVEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      ++..++-+.||+.||+.....+|.+.-....+..   +.-..++-....  + ..+++.+.|++.+...--   +.+|-|
T Consensus        74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~~~  147 (319)
T KOG2640|consen   74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASYRG  147 (319)
T ss_pred             ccCCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc---chhhcc
Confidence            3455788999999999999999999888887763   222223322221  1 356899999999885543   458999


Q ss_pred             CCCHHHHHHHHHHhcC
Q 018164          323 RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~~  338 (360)
                      .++..+|.+|-.+.+.
T Consensus       148 ~r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  148 ERDLASLVNFYTEITP  163 (319)
T ss_pred             cccHHHHHHHHHhhcc
Confidence            9999999999998875

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=88.65  E-value=1.6  Score=32.81  Aligned_cols=55  Identities=15%  Similarity=0.301  Sum_probs=41.8

Q ss_pred             CCCceEEEEEEe-c-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcC
Q 018164          118 SPIKLQVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~g  172 (360)
                      .+++.+|.||.. | +.|....+.+.++..+++. .+.++.|..+....-+.+++.++
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~   81 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG   81 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence            457888899998 8 9999999999999999985 48888888775431234455555

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PTZ00256 glutathione peroxidase; Provisional

Probab=88.49  E-value=4.8  Score=32.89  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=32.1

Q ss_pred             CCce-EEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          119 PIKL-QVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       119 ~~~~-~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      ++++ ++++++.| +.|.+.++.+.++.++|+++ +.++.|+++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            4444 34558888 99999999999999999864 888888764

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=88.28  E-value=0.72  Score=33.89  Aligned_cols=78  Identities=18%  Similarity=0.272  Sum_probs=51.3

Q ss_pred             eeecCcccccccccCCCceEEEEEEec----cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA----DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~----~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +..++.++++.+...+.. .++|+...    ..+....-.+=++.+.|.+.+..+.+.....   +.+...||+... |+
T Consensus        11 ~~~vd~~~ld~~l~~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e---~~L~~r~gv~~~-Pa   85 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAPGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE---RALAARFGVRRW-PA   85 (107)
T ss_dssp             EEEE-CCCHHHHHHCCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH---HHHHHHHT-TSS-SE
T ss_pred             CeeechhhHHHHHhCCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH---HHHHHHhCCccC-Ce
Confidence            345567777777766544 45555543    3344455567788899999998888885544   488999999998 99


Q ss_pred             eEEEEeCC
Q 018164          180 VVTAFDNK  187 (360)
Q Consensus       180 ~~~~~~~~  187 (360)
                      ++ ++..+
T Consensus        86 Lv-f~R~g   92 (107)
T PF07449_consen   86 LV-FFRDG   92 (107)
T ss_dssp             EE-EEETT
T ss_pred             EE-EEECC
Confidence            85 44443

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=88.23  E-value=0.95  Score=37.56  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=22.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHH
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEK  272 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~  272 (360)
                      +.+..++.|+.+.|++|+++.+.+.+
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh
Confidence            46789999999999999999988875

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=88.15  E-value=0.7  Score=38.70  Aligned_cols=41  Identities=15%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~  290 (360)
                      .++.+|.|++-.|+||..+.+.+   ..+.+.+.+  ++.+.++.+
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence            35679999999999999999876   777877765  566666654

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=88.12  E-value=3.4  Score=31.78  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=29.9

Q ss_pred             CCceEEEEEE-ec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164          119 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~  159 (360)
                      +++.++.||. .| +.|....+.+.++.+++.+ .+.++.|..+
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   66 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD   66 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4567777774 56 7899999999999988874 3666666544

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=87.81  E-value=4  Score=33.37  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHh-hcC-ce-EEEEEeCCCc-------------------c-------cchhHH
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARN-FKG-KI-MFTAVDIADE-------------------D-------LAKPFL  168 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~-~~~-~i-~f~~vd~~~~-------------------~-------~~~~l~  168 (360)
                      ++..+|-|++.| ..|+.-+|.+..++.+ +.- +. +...||.++.                   +       -...+.
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            667788888888 8888888888887643 221 00 0022222210                   0       001345


Q ss_pred             hhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          169 TLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       169 ~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      ..+|+.+. |+.+.+.+.++.-.+...|.++.+.+.+.+
T Consensus       139 ~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       139 NAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             HhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            67788777 776446666655566668888888887743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=87.55  E-value=1.8  Score=34.76  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=41.0

Q ss_pred             CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +++.++.||..|  +.|....+.|.++++++. .+.++.|..+.....+.+++.+|+.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~  100 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE  100 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence            456788899888  679999999999999995 5777777766432234566776664

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=86.48  E-value=3.3  Score=32.63  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCc---eEEEEEeCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~---i~f~~vd~~  159 (360)
                      ++...++|-+.| ++|+.+.|.+.++-...+..   +-++.|..+
T Consensus        33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D   77 (157)
T KOG2501|consen   33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD   77 (157)
T ss_pred             CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence            455667777888 99999999888887777765   444444444

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=86.07  E-value=13  Score=28.30  Aligned_cols=87  Identities=15%  Similarity=0.086  Sum_probs=57.9

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC--------cccc
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA--------ISKF  192 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~--------~~~y  192 (360)
                      .++-|=.+| +.|-++...+.++|.+.++-..+..+|.++-+   ++.+.|.+. . |..+.++-.++        +...
T Consensus        23 vViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---dfn~~yel~-d-P~tvmFF~rnkhm~vD~Gtgnnn   97 (133)
T PF02966_consen   23 VVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---DFNQMYELY-D-PCTVMFFFRNKHMMVDFGTGNNN   97 (133)
T ss_dssp             EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---CCHHHTTS--S-SEEEEEEETTEEEEEESSSSSSS
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---hhhcccccC-C-CeEEEEEecCeEEEEEecCCCcc
Confidence            334444455 88999999999999999988888899999776   888999998 4 76555552222        1122


Q ss_pred             cCCCC-CCHHHHHHHHHHHhcC
Q 018164          193 LLESD-LTPSNIEEFCSRLLHG  213 (360)
Q Consensus       193 ~~~~~-~~~~~i~~fi~~~~~g  213 (360)
                      ++.+- -+.+++..-++....|
T Consensus        98 Kin~~~~~kqe~iDiie~iyrg  119 (133)
T PF02966_consen   98 KINWAFEDKQEFIDIIETIYRG  119 (133)
T ss_dssp             SBCS--SCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHHH
Confidence            22333 3567777777776544

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=85.72  E-value=8.3  Score=31.09  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=30.0

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~  159 (360)
                      ++..+|.|| ..| ..|....+.|.+++++|.+ .+.++.|..+
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d   72 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD   72 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            455666666 577 8999999999999999974 3656555543

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=85.61  E-value=1  Score=32.99  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCc-cCceEe--cCC
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDK-ANPIKV--SAR  323 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~-~~~~~~--~g~  323 (360)
                      .+|+.|+|+.|++....+++.        ++.+-.+|+..+...  ++    +..+.+.--++...+. .+...-  ...
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~   73 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE   73 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence            578999999999987666664        466777777665331  11    2223333333433322 110101  235


Q ss_pred             CCHHHHHHHHHHhcC
Q 018164          324 SSSKNIAAFIKEQLK  338 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~  338 (360)
                      .+.+++.++|.++-.
T Consensus        74 ls~~e~~~~l~~~p~   88 (105)
T cd02977          74 LSDEEALELMAEHPK   88 (105)
T ss_pred             CCHHHHHHHHHhCcC
Confidence            678888888887654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=85.38  E-value=2.3  Score=33.57  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=33.3

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~  159 (360)
                      ++++++.|++.| + |..-.+.++++.++|++ .+.++.|.++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            567888999999 7 99999999999999974 4777777653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=85.20  E-value=2.3  Score=33.90  Aligned_cols=93  Identities=6%  Similarity=-0.014  Sum_probs=58.4

Q ss_pred             HHHHHHHhhccCCceeecCc--ccccccccCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCccc
Q 018164           90 DKILQFLNYNKFPLVTKLTD--INSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDL  163 (360)
Q Consensus        90 ~~l~~fi~~~~~p~v~~l~~--~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~  163 (360)
                      .+-.-++..|....|....-  +.+...-..+++.+|.++.+| .-|..+.. .|  .++|.-++..+.-+.||.++.+ 
T Consensus         6 ~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~P-   84 (163)
T PF03190_consen    6 NSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERP-   84 (163)
T ss_dssp             G---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-H-
T ss_pred             cCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCc-
Confidence            34567888888888865544  556666677888899999999 77998775 44  4688888888888999999876 


Q ss_pred             chhHHhhc--------CCCCCCCceEEEEeCC
Q 018164          164 AKPFLTLF--------GLEESKNTVVTAFDNK  187 (360)
Q Consensus       164 ~~~l~~~~--------gi~~~~p~~~~~~~~~  187 (360)
                        ++-..|        |..++ |.. ++.+..
T Consensus        85 --did~~y~~~~~~~~~~gGw-Pl~-vfltPd  112 (163)
T PF03190_consen   85 --DIDKIYMNAVQAMSGSGGW-PLT-VFLTPD  112 (163)
T ss_dssp             --HHHHHHHHHHHHHHS---S-SEE-EEE-TT
T ss_pred             --cHHHHHHHHHHHhcCCCCC-Cce-EEECCC
Confidence              776655        56677 777 455554

; PDB: 3IRA_A.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=83.08  E-value=3.7  Score=28.43  Aligned_cols=77  Identities=16%  Similarity=0.247  Sum_probs=48.1

Q ss_pred             EEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC-cccccCCCCCCH
Q 018164          124 VYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA-ISKFLLESDLTP  200 (360)
Q Consensus       124 v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~-~~~y~~~~~~~~  200 (360)
                      +.+|...  .=|+.+...++.++....  +.+-.+|..+.+   .+...||..   -|++.+-+... .......+.++.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~---~l~~~Y~~~---IPVl~~~~~~~~~~~~~~~~~~d~   73 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDP---ELFEKYGYR---IPVLHIDGIRQFKEQEELKWRFDE   73 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTH---HHHHHSCTS---TSEEEETT-GGGCTSEEEESSB-H
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCH---HHHHHhcCC---CCEEEEcCcccccccceeCCCCCH
Confidence            3455554  679988888887665554  888889988765   788899963   44433322111 002223467899


Q ss_pred             HHHHHHHH
Q 018164          201 SNIEEFCS  208 (360)
Q Consensus       201 ~~i~~fi~  208 (360)
                      +.|.+|++
T Consensus        74 ~~L~~~L~   81 (81)
T PF05768_consen   74 EQLRAWLE   81 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999875

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=82.42  E-value=2.6  Score=33.11  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=33.9

Q ss_pred             EEEEeCC------CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----CC-CC----CCCCcEEEE
Q 018164          252 LLEVYTP------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PK-LQ----VEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~~-~~----i~~~Pti~~  308 (360)
                      +|+|+++      +|++|..++..|+.+        ++.+-.+|++.+ +.    .. .+    -..+|.+++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4566677      899999998888765        577888898776 22    11 12    257888754

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.72  E-value=7.3  Score=29.07  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=44.8

Q ss_pred             CCceEEEEEE--------ec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC----CCceEEE
Q 018164          119 PIKLQVYVFA--------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES----KNTVVTA  183 (360)
Q Consensus       119 ~~~~~v~f~~--------~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~----~p~~~~~  183 (360)
                      +...+++|+.        +| ++|-+..+.+.+.-+....++.|+.++..+.+..+.....|..+..    -||++.+
T Consensus        25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw  102 (128)
T KOG3425|consen   25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW  102 (128)
T ss_pred             CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence            3345555654        36 7899999999999888888999999998877655555444444322    1666444

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.33  E-value=3.7  Score=29.49  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             CccEEEEE----eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCCCc
Q 018164          248 HKDVLLEV----YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       248 ~~~~~v~f----~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g~~  314 (360)
                      +.++++++    -.|.||.+.+...++..+.       -+.|+.+|+-.+ ++.    ++ +..++|.+  |-+|+-
T Consensus        14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g-------~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL--yi~GEf   81 (105)
T COG0278          14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACG-------VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQL--YVNGEF   81 (105)
T ss_pred             cCceEEEecCCCCCCCCCccHHHHHHHHHcC-------CcceeEEeeccCHHHHhccHhhcCCCCCcee--eECCEE
Confidence            44555554    3678999988776666552       167889999888 553    22 44455555  546644

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=81.21  E-value=2.2  Score=31.29  Aligned_cols=35  Identities=14%  Similarity=0.014  Sum_probs=25.4

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH  295 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~  295 (360)
                      .+|+.|+|+.|++....+++-        ++.+-.+|...+..
T Consensus         2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~   36 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL   36 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence            578999999999977666554        45666677766633

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=81.10  E-value=3.8  Score=27.59  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=30.5

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhh-----cCCCCCCCce
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL-----FGLEESKNTV  180 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~-----~gi~~~~p~~  180 (360)
                      +.+|+.+| +.|.++.+.|.+++.      .+-.+|.+..+   .....     +|+... |++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~---~~~~~~~~~~~~~~~v-P~i   55 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDE---GAADRVVSVNNGNMTV-PTV   55 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCH---hHHHHHHHHhCCCcee-CEE
Confidence            46788888 999999988876643      34456666443   22222     266555 775

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=80.97  E-value=2.2  Score=32.74  Aligned_cols=34  Identities=12%  Similarity=0.337  Sum_probs=24.9

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      +.+|+.|+|+.|++....+++-        ++.+-.+|+..+
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~   35 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence            5678999999999977666554        456666776655

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=80.47  E-value=20  Score=29.47  Aligned_cols=93  Identities=9%  Similarity=-0.035  Sum_probs=55.5

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc----------------------cchhHHhhcCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED----------------------LAKPFLTLFGL  173 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~gi  173 (360)
                      +++.++.|| ..| ..|..-.+.|.++.++|.. .+.++.|..+...                      ....+++.||+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            345666667 567 8899999999999999863 2444444433210                      01366788887


Q ss_pred             CC---C--CCceEEEEeCCCcccccC----CCCCCHHHHHHHHHHHhc
Q 018164          174 EE---S--KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       174 ~~---~--~p~~~~~~~~~~~~~y~~----~~~~~~~~i~~fi~~~~~  212 (360)
                      ..   .  .|.. .+.+.++.-.|.+    ....+.+.+.+.+.....
T Consensus       111 ~~~~~g~~~r~t-fIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~  157 (187)
T PRK10382        111 MREDEGLADRAT-FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY  157 (187)
T ss_pred             CcccCCceeeEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhh
Confidence            31   1  1444 4555444333332    334689999999887653

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=80.17  E-value=5.4  Score=30.92  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=33.0

Q ss_pred             CceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCc
Q 018164          120 IKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE  161 (360)
Q Consensus       120 ~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~  161 (360)
                      .+.+++|| ..| +.|....+.+.++.+++.. .+.++.|..+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~   68 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP   68 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence            45666665 678 9999999999999999963 488888877654

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=80.14  E-value=2.5  Score=31.35  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC--CC----CCCCCcEEEEEeCCCcc-CceEecC---
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KL----QVEEYPTLLFYPAGDKA-NPIKVSA---  322 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~~----~i~~~Pti~~~~~g~~~-~~~~~~g---  322 (360)
                      .+|+.++|+.|++....+++-        ++.+-.+|+..+...  ++    +..+.|.--+++..+.. +.....+   
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   73 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP   73 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence            468899999999987666663        466777787766332  12    33455655555444332 1111111   


Q ss_pred             CCCHHHHHHHHHHhcC
Q 018164          323 RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~~  338 (360)
                      ..+.+++++.|.++-.
T Consensus        74 ~~s~~e~~~~l~~~p~   89 (111)
T cd03036          74 SLSEEEALELLSSDGM   89 (111)
T ss_pred             cCCHHHHHHHHHhCcC
Confidence            2355777777776643

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		1e-36
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		5e-25
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		4e-04
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		3e-21
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		3e-21
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		1e-17
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		2e-17
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		8e-04
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		4e-15
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		1e-13
3bj5_A	147	Alternative Conformations Of The X Region Of Human		5e-10
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		1e-07
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		5e-07
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		5e-07
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		1e-06
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		1e-06
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		2e-06
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		2e-06
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		3e-06
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		3e-06
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		5e-06
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		9e-06
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		9e-06
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		1e-05
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		1e-05
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		1e-05
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		1e-05
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		1e-05
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		1e-05
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		1e-05
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-05
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		1e-05
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-05
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		2e-05
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		2e-05
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		2e-05
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		2e-05
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		3e-05
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		4e-05
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-05
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		5e-05
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		5e-05
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		6e-05
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		8e-05
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		9e-05
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		9e-05
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		9e-05
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-04
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		2e-04
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		2e-04
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		2e-04
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		5e-04
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		5e-04
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		7e-04
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		8e-04

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)
Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V      D    D 
Sbjct: 28  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD---KDG 84
Query: 69  FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF- 127
            +   K +  R   +E     + +L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct: 85  VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 143
Query: 128 -AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                D    L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct: 144 PKSVSDYDGKLSNFKTAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 202
Query: 186 NKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN-VQIVVGKTFDDL 243
            + ++K+  ES+ LT   I EFC R L G + P+L SQ +P++ +   V+++VGK F+D+
Sbjct: 203 EEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDV 262
Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEY 303
             +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   ++V  +
Sbjct: 263 AFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF 322
Query: 304 PTLLFYPA 311
           PTL F+PA
Sbjct: 323 PTLKFFPA 330

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 40/364 (10%)
Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
           T  E ++F+      ++G F       + EF+K A+   +      +N E     Y    
Sbjct: 117 TEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEY---- 172
Query: 65  STDHFLGIVKSEP--------DRYTGY-EETFIMDKILQFLNYNKFPLVTKLTDINSASV 115
             D+  GI+   P        D+   Y E+     KI +F+  N F +   +T+ N   +
Sbjct: 173 -DDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLI 231
Query: 116 HSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF-------- 167
               + +  Y      + K         +  ++ ++M  A    D      F        
Sbjct: 232 QGKDLLIAYYDVDYEKNAKG--------SNYWRNRVMMVAKKFLDAGHKLNFAVASRKTF 283
Query: 168 ---LTLFGLEESKNTV-VTAFDNKAISKFLLESDLTPSN--IEEFCSRLLHGTLTPYLKS 221
              L+ FGLE +   + V A       KF+++ + +     +E F      G L  YLKS
Sbjct: 284 SHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKS 343
Query: 222 QPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD 281
           +PIP++ +  V++VV + FD++V N +KDVL+E Y PWC  C+    + ++L +      
Sbjct: 344 EPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDP 403
Query: 282 NLVIAKIDASANEHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
           N+VIAK+DA+AN+ P   +V  +PT+ F PA  K NP K       + ++ FI    +E 
Sbjct: 404 NIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEG---GRELSDFISYLQREA 460
Query: 341 DQSP 344
              P
Sbjct: 461 TNPP 464

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KLQVEEYPTLLF 308
           +L+E + PWC   +  + + E  A   KG+  + +AK+D +AN +   K  V  YPTL  
Sbjct: 24  MLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 309 YPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           +  G++A         ++  I + +K+Q
Sbjct: 82  FRDGEEAG--AYDGPRTADGIVSHLKKQ 107

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 213 GTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEK 272
           G L  YLKS+PIP++ +  V++VV + FD++V N +KDVL+E Y PWC  C+    + ++
Sbjct: 10  GNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE 69
Query: 273 LAKHFKGLDNLVIAKIDASANEHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 331
           L +      N+VIAK+DA+AN+ P   +V  +PT+ F PA  K NP K       + ++ 
Sbjct: 70  LGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEG---GRELSD 126
Query: 332 FIKEQLKEKDQSP 344
           FI    +E    P
Sbjct: 127 FISYLQREATSGP 139

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
            ++  V++VVGKTFD +V++  KDVL+E Y PWC  C+        L K +KG  +LVIA
Sbjct: 4   GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 287 KIDASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSS-KNIAAFIKEQLKEKDQS 343
           K+DA+AN+  + + +VE +PT+ F P+GDK NPIK    +   ++++ FI E   ++ ++
Sbjct: 64  KMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-----KHFKG 279
           P  +   V +VV K ++++VL+  KDVL+E Y PWC  C+  + + E+L        FK 
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK- 60
Query: 280 LDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
            D +VIAK+DA+AN+ P  +++ +PT+  YPAG K  P+  S   + +++  FI E  K 
Sbjct: 61  -DRVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 118
Query: 340 K 340
           K
Sbjct: 119 K 119

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 183 AFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDD 242
           AFD  +  K +LES    S +++F    L G  +P +KSQ I +N +++V  +VGK  D+
Sbjct: 316 AFDELS-DKIVLESKAIESLVKDF----LKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370
Query: 243 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDASANEHPKLQVE 301
           +V +  KDVL+  Y PWC  C+  +   ++LA  +     +++IAK+D + N+   + +E
Sbjct: 371 IVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE 430
Query: 302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
            YPT++ YP G K+  +      S  ++  FIKE
Sbjct: 431 GYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQ--VEE 302
           + SH  VL E + PWC  C+  + +  K A+      N+ +A+ID + N+   ++  +  
Sbjct: 28  IQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPG 86
Query: 303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           +P+L  +   D  N I      +++ I  F+ +Q
Sbjct: 87  FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 57/85 (67%)
Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
            ++  V+++VGK F+D+  +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIA
Sbjct: 4   GSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 63
Query: 287 KIDASANEHPKLQVEEYPTLLFYPA 311
           K+D++ANE   ++V  +PTL F+PA
Sbjct: 64  KMDSTANEVEAVKVHSFPTLKFFPA 88

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 9   AEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDH 68
           AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V      D    D 
Sbjct: 17  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD---KDG 73
Query: 69  FLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF- 127
            +   K +  R   +E     + +L F+ +N+ PLV + T+  +  +    IK  + +F 
Sbjct: 74  VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 132
Query: 128 -AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD- 185
                D    L   +  A +FKGKI+F  +D +D    +  L  FGL++ +   V     
Sbjct: 133 PKSVSDYDGKLSNFKTAAESFKGKILFIFID-SDHTDNQRILEFFGLKKEECPAVRLITL 191
Query: 186 NKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKS 221
            + ++K+  ES +LT   I EFC R L G + P+L S
Sbjct: 192 EEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 228

>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein Disulphide- Isomerase Modulate Exposure Of The Substrate Binding B' Domain Length = 147

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 99  NKFPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARNFKGKIMFTAV 156
           N+ PLV + T+  +  +    IK  + +F      D    L   +  A +FKGKI+F  +
Sbjct: 11  NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 157 DIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLESD-LTPSNIEEFCSRLLHGT 214
           D +D    +  L  FGL++ +   V      + ++K+  ES+ LT   I EFC R L G 
Sbjct: 71  D-SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 215 LTPYLKSQPIPDN 227
           + P+L SQ +P++
Sbjct: 130 IKPHLMSQELPED 142

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDN-LVIAKIDASANEHPKLQ--V 300
            L +HK +L+E Y PWC  C+  + +  K A   K   + + +AK+DA+       Q  V
Sbjct: 20  ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGV 79
Query: 301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
             YPT+ F+  GD A+P + +A   + +I  ++K++
Sbjct: 80  RGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294
           V  + F+  VL S K VL++ + PWC  C   +  IE+LAK ++G   +V   +D + N 
Sbjct: 6   VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 295 HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
             +  +   PTLL +  G   +          + + A  KE LKE+
Sbjct: 66  AAQYGIRSIPTLLLFKNGQVVD----------RLVGAQPKEALKER 101

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIA 286
           ++  V  +    FDD +  +     ++ Y PWC  C+T +   E+L+ K F GL  + IA
Sbjct: 5   SSGTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA---FIKEQLKEK 340
           ++D +A  +   K  V  YPTLL +  G      KVS  S  +++ +   F+  Q K++
Sbjct: 63  EVDCTAERNICSKYSVRGYPTLLLFRGGK-----KVSEHSGGRDLDSLHRFVLSQAKDE 116

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASANEH--P 296
           FDD +  +     ++ Y PWC  C+T +   E+L+ K F GL  + IA++D +A  +   
Sbjct: 10  FDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICS 67
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA---FIKEQLKEK 340
           K  V  YPTLL +  G      KVS  S  +++ +   F+  Q K++
Sbjct: 68  KYSVRGYPTLLLFRGGK-----KVSEHSGGRDLDSLHRFVLSQAKDE 109

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASANEH--P 296
           FDD +  +     ++ Y PWC  C+T +   E+L+ K F GL  + IA++D +A  +   
Sbjct: 15  FDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICS 72
Query: 297 KLQVEEYPTLLFYPAGDKAN 316
           K  V  YPTLL +  G K +
Sbjct: 73  KYSVRGYPTLLLFRGGKKVS 92

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +++ ++  +  K+FD  + N++   L+E Y PWC  C+  S    K AK   G+  +   
Sbjct: 14  DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73
Query: 287 KIDASANEH--PKLQVEEYPTLLFY--PAGDKANPIKVSARSSS 326
             D + N+    K  V  +PTL+ +  P  D + PI  + +S S
Sbjct: 74  NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFS 117

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WCV C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  GD A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGDVA----------ATKVGALSKGQLKE 101

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  CE  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  +E++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A+ ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 21  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 78
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 79  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 111

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRSIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASA 292
           V   +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID + 
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP 64
Query: 293 NEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
              PK  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 65  GTAPKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEH 295
           ++FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    
Sbjct: 10  ESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTA 67
Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           PK  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 68  PKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 12  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 69
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 70  KYGIRGTPTLLLFKNGEVA----------ATKVGALSKGQLKE 102

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKID 289
            V ++    FD+ V +    VLLE Y PWC  C+  + + EK+A   K  D  + +AKID
Sbjct: 18  GVWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76
Query: 290 ASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           A++      K  V  YPT+       K   +      + + I A ++E + + D +P  E
Sbjct: 77  ATSASMLASKFDVSGYPTIKIL---KKGQAVDYDGSRTQEEIVAKVRE-VSQPDWTPPPE 132

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++ +A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ACKVGALSKGQLKE 101

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-IAKID 289
            V ++    FD+ V +    VLLE Y PWC  C+  + + EK+A   K  D  + +AKID
Sbjct: 16  GVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID 74
Query: 290 ASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 347
           A++      +  V  YPT+       K   +      + + I A ++E + + D +P  E
Sbjct: 75  ATSASVLASRFDVSGYPTIKIL---KKGQAVDYEGSRTQEEIVAKVRE-VSQPDWTPPPE 130

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           VQ V   ++ + VL S   V+++ + PWC  C+  +  I++LAK + G   +     D +
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPI 318
                +  +   PT+LF+  G++   I
Sbjct: 62  PGIATQYNIRSIPTVLFFKNGERKESI 88

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 327
           K  +   PTLL +  G+ A   KV A S  +
Sbjct: 69  KYGIRGIPTLLLFKNGEVA-ATKVGALSKGQ 98

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +F+  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 327
           K  +   PTLL +  G+ A   KV A S  +
Sbjct: 69  KYGIRGIPTLLLFKNGEVA-ATKVGALSKGQ 98

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDAS--ANEHP 296
           FDD+V N+   +L+E Y PWC  C+  + + EK AK   K    + +AK+DA+   +   
Sbjct: 17  FDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAK 75
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           +  V  YPTL  +    K  P   +       I  ++ EQ
Sbjct: 76  RFDVSGYPTLKIF---RKGRPFDYNGPREKYGIVDYMIEQ 112

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC   +  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL 298
           ++ + VL S   V+++ + PWC  C+  +  I++LAK + G   +     D +     + 
Sbjct: 8   SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQY 67
Query: 299 QVEEYPTLLFYPAGDKANPI 318
            +   PT+LF+  G++   I
Sbjct: 68  NIRSIPTVLFFKNGERKESI 87

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294
           V  + FD+  L  H  VL++ +  WC  C   +  +E++AK ++G   L++AK+D   +E
Sbjct: 7   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLD--VDE 61
Query: 295 HPK----LQVEEYPTLLFYPAGDKANPIKVSARSSSK-NIAAFIKEQL 337
           +PK     +V   PT++ +  G    P++V   +  K N  A I++ L
Sbjct: 62  NPKTAXRYRVXSIPTVILFKDG---QPVEVLVGAQPKRNYQAKIEKHL 106

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 235 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 294
           V  + FD+  L  H  VL++ +  WC  C   +  +E++AK ++G   L++AK+D   +E
Sbjct: 6   VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLD--VDE 60
Query: 295 HPK----LQVEEYPTLLFYPAGDKANPIKVSARSSSK-NIAAFIKEQL 337
           +PK     +V   PT++ +  G    P++V   +  K N  A I++ L
Sbjct: 61  NPKTAXRYRVXSIPTVILFKDG---QPVEVLVGAQPKRNYQAKIEKHL 105

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP--KLQVEEYPTLLF 308
           +L+E + PWC  C+  + + E  A   KG+  + +AK+D +AN +   K  V  YPTL  
Sbjct: 24  MLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 309 YPAGDKA 315
           +  G++A
Sbjct: 82  FRDGEEA 88

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC   +  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 31  SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 88
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 89  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 121

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  VL +   +L++ +  WC   +  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLDNLVIAK--IDASANEH 295
           +FD  VL +   +L++ +  WC   C+  +  ++++A  ++G   L +AK  ID +    
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTA 68
Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           PK  +   PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  PKYGIRGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 102

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
           +TF++ VL      +++ Y PWC  C+  + + E LA+  KG   +   K+D  A     
Sbjct: 11  QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTC 68
Query: 296 PKLQVEEYPTLLFYPAGDKANPI---KVSARSSSKNIAAFIKEQL 337
            K  ++ YP++  Y        I   ++++R  +K IAA I  +L
Sbjct: 69  QKAGIKAYPSVKLYQYERAKKSIWEEQINSR-DAKTIAALIYGKL 112

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           VQ V   ++ + VL S   V+++ + PWC   +  +  I++LAK + G   +     D +
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPI 318
                +  +   PT+LF+  G++   I
Sbjct: 62  PGIATQYNIRSIPTVLFFKNGERKESI 88

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           +FD  ++ +   +L++ +  WC  C+  +  ++++A  ++G   L +AK  ID +    P
Sbjct: 11  SFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAP 68
Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           K      PTLL +  G+ A          +  + A  K QLKE
Sbjct: 69  KYIERGIPTLLLFKNGEVA----------ATKVGALSKGQLKE 101

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDN---LVIAKIDASANE 294
           +TFD +V++  KDV +  Y PW        +  + L+       N    V A+ID    +
Sbjct: 23  ETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID--GEK 80
Query: 295 HP----KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333
           +P    +++V  +PT+ +Y   DK  P + S +     + +F+
Sbjct: 81  YPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	1e-70
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-52
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-12
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-50
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	9e-19
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-36
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	2e-36
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	9e-31
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	8e-29
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-28
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-21
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-08
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-28
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-10
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	5e-27
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-25
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-07
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-04
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	9e-24
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	1e-20
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-19
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-07
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	9e-04
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-19
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	3e-19
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-19
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	5e-13
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	9e-19
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-18
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-18
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	6e-18
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	7e-18
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	8e-18
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	2e-15
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	7e-15
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	8e-14
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	2e-12
2l57_A	126	Uncharacterized protein; structural genomics, unkn	4e-10
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	5e-10
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	5e-10
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	6e-10
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-09
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-09
2kuc_A	130	Putative disulphide-isomerase; structural genomics	3e-09
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	5e-09
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	6e-09
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	7e-09
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	9e-09
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-08
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	1e-08
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	1e-08
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	1e-08
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	2e-08
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-08
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-08
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-08
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	4e-08
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	7e-08
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	1e-07
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	1e-07
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-07
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	3e-07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-07
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	5e-07
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	6e-07
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	6e-07
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	1e-06
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-06
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-06
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	1e-06
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-06
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	2e-06
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	4e-06
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	7e-06
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	9e-06
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	9e-06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	9e-06
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	9e-06
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-05
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	2e-05
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-05
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-05
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	3e-05
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	6e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	7e-05
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-04
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-04
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	4e-04
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	4e-04
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	4e-04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	5e-04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	6e-04
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	6e-04
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	7e-04
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	8e-04

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  224 bits (571), Expect = 1e-70
 Identities = 97/342 (28%), Positives = 168/342 (49%), Gaps = 10/342 (2%)

Query: 4   NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDI 63
                AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V        
Sbjct: 23  PDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFS----KY 78

Query: 64  KSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQ 123
           +     + + K   +    +E     + +L F+ +N+ PLV + T+  +  +    IK  
Sbjct: 79  QLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTH 138

Query: 124 VYVFA--KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN-TV 180
           + +F      D    L   +  A +FKGKI+F  +D  D    +  L  FGL++ +   V
Sbjct: 139 ILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDS-DHTDNQRILEFFGLKKEECPAV 197

Query: 181 VTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIP-DNTNANVQIVVGK 238
                 + ++K+  ES+ LT   I EFC R L G + P+L SQ +P D     V+++VGK
Sbjct: 198 RLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGK 257

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL 298
            F+D+  +  K+V +E Y PWC  C+  +   +KL + +K  +N+VIAK+D++ANE   +
Sbjct: 258 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV 317

Query: 299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
           +V  +PTL F+PA      I  +   +      F++   ++ 
Sbjct: 318 KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDG 359

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  178 bits (452), Expect = 6e-52
 Identities = 87/368 (23%), Positives = 155/368 (42%), Gaps = 13/368 (3%)

Query: 4   NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAK---VL 59
            T  E ++F+      ++G F       + EF+K A+   +  +F  T+   +       
Sbjct: 116 RTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDN 175

Query: 60  YPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP 119
              I          K E       E+     KI +F+  N F +   +T+ N   +    
Sbjct: 176 GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKD 235

Query: 120 IKLQVYVFA---KADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 176
           + +  Y       A         +  +A+ F          +A        L+ FGLE +
Sbjct: 236 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLEST 295

Query: 177 KNTVVT-AFDNKAISKFLL--ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQ 233
              +   A       KF++  E       +E F      G L  YLKS+PIP++ +  V+
Sbjct: 296 AGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVK 355

Query: 234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293
           +VV + FD++V N +KDVL+E Y PWC  C+    + ++L +      N+VIAK+DA+AN
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415

Query: 294 EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEK 352
           + P   +V  +PT+ F PA  K NP K        +  ++++ +        +++   +K
Sbjct: 416 DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQEEKP--KK 473

Query: 353 DQAPKDEL 360
            +  +++L
Sbjct: 474 KKKAQEDL 481

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 66.0 bits (160), Expect = 4e-12
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 231 NVQIVVGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
           +V  +    F+  + +  S   +L+E + PWC   +  + + E  A   KG   + +AK+
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKV 59

Query: 289 DASANEHP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKD 346
           D +AN +   K  V  YPTL  +  G++          ++  I + +K+Q        + 
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEE--AGAYDGPRTADGIVSHLKKQAGPASVPLRT 117

Query: 347 EQWKEK 352
           E+  +K
Sbjct: 118 EEEFKK 123

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  174 bits (442), Expect = 2e-50
 Identities = 71/365 (19%), Positives = 139/365 (38%), Gaps = 15/365 (4%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
               A    + + T V+    K +      F   A      +     +F  A+    D K
Sbjct: 129 ADLPAYLANETFVTPVIVQSGKIDADFNATFYSMAN-----KHFNDYDFVSAENADDDFK 183

Query: 65  STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
            + +    +           +    D   ++L     P   ++     A    S + L  
Sbjct: 184 LSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGY 243

Query: 125 YVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADE---------DLAKPFLTLFGLEE 175
             +   ++L+       ++A+  +G + F ++D                 P   +  + E
Sbjct: 244 LFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE 303

Query: 176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIV 235
                +     +A  +   +  L    IE      L G  +P +KSQ I +N +++V  +
Sbjct: 304 DLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQL 363

Query: 236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASANE 294
           VGK  D++V +  KDVL+  Y PWC  C+  +   ++LA  +     +++IAK+D + N+
Sbjct: 364 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND 423

Query: 295 HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQ 354
              + +E YPT++ YP G K+  +      S  ++  FIKE            +  ++  
Sbjct: 424 VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKA 483

Query: 355 APKDE 359
           A + +
Sbjct: 484 AEEAD 488

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 86.4 bits (213), Expect = 9e-19
 Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 217 PYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH 276
            +++ + +    ++ V  +   +F++  + SH  VL E + PWC  C+  + +  K A+ 
Sbjct: 2   GHMQQEAVAPE-DSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAET 59

Query: 277 FKGLDNLVIAKIDASANEHP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK 334
                N+ +A+ID + N+    +  +  +P+L  +   D  N I      +++ I  F+ 
Sbjct: 60  LVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMI 118

Query: 335 EQLKEKDQSPKDEQWKEKDQAPKD 358
           +Q +       D      ++    
Sbjct: 119 KQSQPAVAVVADLPAYLANETFVT 142

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  127 bits (322), Expect = 2e-36
 Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 3/128 (2%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
            ++  V++VVGKTFD +V++  KDVL+E Y PWC  C+        L K +KG  +LVIA
Sbjct: 4   GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63

Query: 287 KIDASANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQLKEKDQS 343
           K+DA+AN+  + + +VE +PT+ F P+GDK NPIK    +   ++++ FI E   ++ ++
Sbjct: 64  KMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRT 123

Query: 344 PKDEQWKE 351
            ++     
Sbjct: 124 KEELSGPS 131

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  127 bits (320), Expect = 2e-36
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 4/119 (3%)

Query: 225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL---D 281
           P  +   V +VV K ++++VL+  KDVL+E Y PWC  C+  + + E+L   +      D
Sbjct: 2   PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61

Query: 282 NLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
            +VIAK+DA+AN+ P  +++ +PT+  YPAG K  P+  S   + +++  FI E  K K
Sbjct: 62  RVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 119

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score =  116 bits (291), Expect = 9e-31
 Identities = 46/239 (19%), Positives = 85/239 (35%), Gaps = 10/239 (4%)

Query: 4   NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAKVLYPD 62
            T  E ++F+      ++G F       + EF+K A+   +  +F  T+   +      +
Sbjct: 12  RTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDN 71

Query: 63  IKSTDHF---LGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSP 119
            +    F       K E       E+     KI +F+  N F +   +T+ N   +    
Sbjct: 72  GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKD 131

Query: 120 IKLQVYVFAKAD---DLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 176
           + +  Y                 +  +A+ F          +A        L+ FGLE +
Sbjct: 132 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLEST 191

Query: 177 KNTV-VTAFDNKAISKFLLESD--LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANV 232
              + V A       KF+++ +       +E F      G L  YLKS+PIP++ +   
Sbjct: 192 AGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGAA 250

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  107 bits (269), Expect = 8e-29
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 220 KSQPIP--DNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF 277
            +  +       + V  +  +TFD +V++  KDV +  Y PW        +  + L+   
Sbjct: 3   MASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQ 62

Query: 278 KGLDN---LVIAKIDASAN--EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAF 332
               N    V A+ID         +++V  +PT+ +Y   DK  P + S +     + +F
Sbjct: 63  SQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSF 122

Query: 333 IKEQ 336
           + + 
Sbjct: 123 VFQN 126

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  114 bits (287), Expect = 3e-28
 Identities = 54/330 (16%), Positives = 105/330 (31%), Gaps = 42/330 (12%)

Query: 29  GSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFI 88
            +     +K    D  I     + + +    YP            +S    Y G+     
Sbjct: 481 STLLYGQLKVGTLDCTIHEGLCNMYNIQA--YPTTV------VFNQSSIHEYEGH---HS 529

Query: 89  MDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQ---VYVFAK-ADDLKSLLEPLEDIA 144
            ++IL+F+   + P V  LT      +       +   V  ++  +   + L+   + +A
Sbjct: 530 AEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMA 589

Query: 145 RNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIE 204
           R   G I   +VD         F T   ++           +    ++   +        
Sbjct: 590 RTLTGLINVGSVDCGQY---HSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNG------- 639

Query: 205 EFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCE 264
                        Y                +  +TF++ VL      +++ Y PW    +
Sbjct: 640 --------WNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQ 691

Query: 265 TTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSA 322
             + + E LA+  K    +   K+D  A      K  ++ YP++  Y        I    
Sbjct: 692 NFAPEFELLARMIK--GKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQ 749

Query: 323 RS--SSKNIAAFIKEQL---KEKDQSPKDE 347
            +   +K IAA I  +L   + + +  KDE
Sbjct: 750 INSRDAKTIAALIYGKLETLQSQVKRNKDE 779

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 92.9 bits (230), Expect = 9e-21
 Identities = 37/370 (10%), Positives = 97/370 (26%), Gaps = 49/370 (13%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSD-----YEEFVKTAAADNEI----QFVETSNFEV 55
           +       ++      +G    F          +  ++ +   + +         +   +
Sbjct: 228 STGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSL 287

Query: 56  AK---VLYPDIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINS 112
            K                 +   E             +  ++ ++    P    L+    
Sbjct: 288 CKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIH--NLPDFELLSANQL 345

Query: 113 ASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLF 171
               +      +  F    +  +    L+ +    K   I     D +         +  
Sbjct: 346 EDRLAH--HRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSA---PGICSDL 400

Query: 172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN 231
            + +    V      K                        HG    Y       ++ N++
Sbjct: 401 YVFQPSLAVFKGQGTKEYEIH-------------------HGKKILYDILAFAKESVNSH 441

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           V  +  + F     +  +  L++ + PW         ++ K +    G   L +  +D +
Sbjct: 442 VTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG--QLKVGTLDCT 496

Query: 292 ANEHP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQW 349
            +E       ++ YPT + +      +  +     S++ I  FI++       S     +
Sbjct: 497 IHEGLCNMYNIQAYPTTVVFNQS---SIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTF 553

Query: 350 KEKDQAPKDE 359
            E  +  K +
Sbjct: 554 NELVKQRKHD 563

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQ 299
           D  +NS +   +  Y+P        +    + AK   G   L I  ++   +        
Sbjct: 127 DAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKG 184

Query: 300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKD 358
           V  YP+L  + +G     +K +   S +++ AF  + ++          +    +    
Sbjct: 185 VNSYPSLFIFRSGM--AAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFA 241

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 43/323 (13%), Positives = 87/323 (26%), Gaps = 52/323 (16%)

Query: 53  FEVAKVLYPDIKSTD----HFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLT 108
           F      Y  +K  D    +     K   D   G  E++   +    +  +   ++T   
Sbjct: 64  FLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLER 123

Query: 109 DINSASVHSSPIKLQVYVFAKADDLKSLLEP-LEDIARNFKGKIMFTAVD-IADEDLAK- 165
               A+V+S  +   V  ++        L P   + A+   G +   AV+   D  L + 
Sbjct: 124 REFDAAVNSGELWF-VNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRM 182

Query: 166 ------PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYL 219
                 P L +F                A  K+    D +  ++  F             
Sbjct: 183 KGVNSYPSLFIFR------------SGMAAVKY--NGDRSKESLVAF------------- 215

Query: 220 KSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG 279
                  +  + V  +    F + +  +     +     +C   E       +L      
Sbjct: 216 ----AMQHVRSTVTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGML 270

Query: 280 LDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKAN----PIKVSARSSSKNIAAFI 333
              + +  +D  A +     L      T  F P     +     +       +K I   I
Sbjct: 271 DGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEI 330

Query: 334 KEQLKEKDQSPKDEQWKEKDQAP 356
              L + +    ++         
Sbjct: 331 IHNLPDFELLSANQLEDRLAHHR 353

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  112 bits (281), Expect = 3e-28
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 14/254 (5%)

Query: 5   TVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIK 64
                   L + +  ++G F++ +  +Y  F + A   ++     ++  +V+K       
Sbjct: 124 RDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGD 183

Query: 65  STDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQV 124
           +  +      +    Y G    F  D    ++     PLV ++T  N   +    +   +
Sbjct: 184 NIIYKPPGHSAPDMVYLGAMTNF--DVTYNWIQDKCVPLVREITFENGEELTEEGLPFLI 241

Query: 125 YVFAK--ADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT 182
               K   + L+     +     + KG I F   D          L       +   V+ 
Sbjct: 242 LFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRH---PLLHIQKTPADCPVIA 298

Query: 183 AFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFD 241
               + +  F    D L P  +++F   L  G L       P P +T        G+   
Sbjct: 299 IDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA------PGEQAQ 352

Query: 242 DLVLNSHKDVLLEV 255
           D+  +  +    ++
Sbjct: 353 DVASSPPESSFQKL 366

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----DNL 283
             + +  +  +  D+ +LN+    L+  Y  WC   +      E+ +   K      + +
Sbjct: 3   LGSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQV 61

Query: 284 VIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 341
           V A++D   +     + ++ +YPTL  +  G      +   + S K +A +I++Q  +  
Sbjct: 62  VFARVDCDQHSDIAQRYRISKYPTLKLFRNG-MMMKREYRGQRSVKALADYIRQQKSDPI 120

Query: 342 QSPKDEQ 348
           Q  +D  
Sbjct: 121 QEIRDLA 127

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score =  106 bits (265), Expect = 5e-27
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 8/237 (3%)

Query: 4   NTVNEAEEFLKKY-QTFVLGMFKKFEGSDYEEFVKTAAADNE-IQFVETSNFEVAKVLYP 61
            T+ + +EFLK      +LG+F+      Y ++   A    E  +F  T + E+AK L  
Sbjct: 12  LTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLKV 71

Query: 62  DIKSTDHFL---GIVKSEPDRYT-GYEETFIMDKILQFLNYNKFPLVTKLTDINSASV-H 116
            +             K EP  +    + +     I  ++  +  PLV      N A    
Sbjct: 72  SLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS 131

Query: 117 SSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 176
             P+ +  Y    + D ++  +   +               IADE+     +   GL ES
Sbjct: 132 KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLSES 191

Query: 177 KNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANV 232
              V  A  +++  KF +E  +     + EF      G L P +KSQP+P N     
Sbjct: 192 GGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPVPKNNKGAA 248

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  105 bits (262), Expect = 1e-25
 Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 15/240 (6%)

Query: 4   NTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAKVLYP 61
               E + F   + +  ++G FK  +   Y+ F + A      I F  T + +VAK L  
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTL 190

Query: 62  DIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIK 121
            +   D +        +  T  ++    ++I+ F+  ++   + KL   +        + 
Sbjct: 191 KLNEIDFYE---AFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMD 247

Query: 122 LQVYVF---AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADED---LAKPFLTLFGLEE 175
               V        D    LE L+ +A++       + + I  +D   L   +   F ++ 
Sbjct: 248 GIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDL 307

Query: 176 SKNTV----VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNAN 231
           S   +    VT  D+  +     E   +   +E++   +L G +          D+ + +
Sbjct: 308 SAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDEDDDDDDDD 367

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 220 KSQPIP-DNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-----IEKL 273
           +    P  +    V  V  K + + V   ++ + L  + P      +  +      I +L
Sbjct: 2   EGLDFPEYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILEL 60

Query: 274 AKHFKGLDNLVIAKIDASANEHP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 331
           A        +    +D+  +     KL + E  ++  +        I+     S+  +  
Sbjct: 61  AAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED---EVIEYDGEFSADTLVE 117

Query: 332 FIKEQLKEKDQSPKDEQWKEKDQAPKDE 359
           F+ + L++  +  + E+  +  +  +DE
Sbjct: 118 FLLDVLEDPVELIEGERELQAFENIEDE 145

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 38/294 (12%), Positives = 84/294 (28%), Gaps = 43/294 (14%)

Query: 74  KSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDL 133
           + E   Y G       D +++FL       V  +          +       +    +  
Sbjct: 100 EDEVIEYDGEFSA---DTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKD 156

Query: 134 KSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFL 193
               +  ++ A  F   I F A    D  +AK       L+ ++     AF  + ++   
Sbjct: 157 SEHYKAFKEAAEEFHPYIPFFATF--DSKVAKKL----TLKLNEIDFYEAFMEEPVTIP- 209

Query: 194 LESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLL 253
            +   +   I  F       TL               ++     +T++D +   H   ++
Sbjct: 210 -DKPNSEEEIVNFVEEHRRSTLRKL---------KPESMY----ETWEDDMDGIH---IV 252

Query: 254 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTL-LFYPA- 311
                         + ++ +A+      +L I  ID           E+   + L  P  
Sbjct: 253 AFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQI 312

Query: 312 ---------GDKANPIKVSARSSSKNIAAFIKEQLK-----EKDQSPKDEQWKE 351
                                 S++ +  ++++ L+     E D    D+   +
Sbjct: 313 GVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDEDDDDDDD 366

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score = 94.7 bits (235), Expect = 9e-24
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 89  MDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARN 146
           M      + +N+ PLV + T+  +  +    IK  + +F      D    L   +  A +
Sbjct: 1   MHHHHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAES 60

Query: 147 FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLES-DLTPSNIE 204
           FKGKI+F  +D +D    +  L  FGL++ +   V      + ++K+  ES +LT   I 
Sbjct: 61  FKGKILFAFID-SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERIT 119

Query: 205 EFCSRLLHGTLTPYLKSQPIPDNTNAN 231
           EFC R L G + P+L SQ +P++ +  
Sbjct: 120 EFCHRFLEGKIKPHLMSQELPEDWDKQ 146

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 101 FPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIAD 160
            PL+ ++     +   S+ I L       A++ K L + L+ IA   +G I F      D
Sbjct: 5   SPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFG---TID 61

Query: 161 EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL--ESDLTPSNIEEFCSRLLHGTLTPY 218
                       L+  K       +     KF    E ++T   I+ F    + G + P 
Sbjct: 62  AKAFGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121

Query: 219 LKSQPIPDN 227
           +KS+PIP+ 
Sbjct: 122 IKSEPIPEK 130

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 87.4 bits (216), Expect = 2e-19
 Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 15/224 (6%)

Query: 4   NTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTAAA-DNEIQFVETSNFEVAKVLYP 61
           N+  E + F + + Q  ++G FK  E   Y+ F + A      I+F  T +  VAK L  
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSL 188

Query: 62  DIKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIK 121
            +   D +        +     ++ +  +++++F+  ++ P + +L   +        + 
Sbjct: 189 KMNEVDFYE---PFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLN 245

Query: 122 LQVYVF---AKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL-----FGL 173
               V        D    LE L+ +AR+       + V I  +D               L
Sbjct: 246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDL 305

Query: 174 EESKNTVVTAFDNKAISKFLL--ESDLTPSNIEEFCSRLLHGTL 215
            + +  VV   D  ++   +   +   T   +E++   +L G +
Sbjct: 306 FKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI 349

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 226 DNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----- 280
            +    V  +  K F  ++     DVL   Y     + +   KQ +      + +     
Sbjct: 7   YDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLE 64

Query: 281 -DNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             ++    +DA        KL  +E  +L           I+     ++  +  F+ + +
Sbjct: 65  HKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGD---RTIEFDGEFAADVLVEFLLDLI 121

Query: 338 K 338
           +
Sbjct: 122 E 122

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 40.1 bits (93), Expect = 9e-04
 Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 27/221 (12%)

Query: 76  EPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKS 135
               + G       D +++FL       V  +                  +     +   
Sbjct: 100 RTIEFDGEFAA---DVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESE 156

Query: 136 LLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 195
             +  E+ A +F+  I F A    D+ +AK            N V            + +
Sbjct: 157 YYKAFEEAAEHFQPYIKFFATF--DKGVAKKL------SLKMNEVDFYEPFMDEPIAIPD 208

Query: 196 SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEV 255
              T   + EF       TL               ++     +T++D +   H   ++  
Sbjct: 209 KPYTEEELVEFVKEHQRPTLRRL---------RPEDMF----ETWEDDLNGIH---IVAF 252

Query: 256 YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP 296
                       + ++++A+      +L I  ID       
Sbjct: 253 AERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL 293

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 224 IPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-N 282
            P+    +V ++    F +  L +HK +L+E Y PWC  C+  + +  K A   K     
Sbjct: 2   APE-EEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE 59

Query: 283 LVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           + +AK+DA+       +  V  YPT+ F+  GD A+P + +A   + +I  ++K++ 
Sbjct: 60  IRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 82.1 bits (203), Expect = 3e-19
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDN--LV 284
            ++ +V  +   +FD  VL+S    ++E Y PWC  C+    +    A   K      + 
Sbjct: 4   GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63

Query: 285 IAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 342
           +A +DA+ N+    +  +  +PT+  +  G+         R +  +I +   +   +   
Sbjct: 64  LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYD-GGR-TRSDIVSRALDLFSDN-- 119

Query: 343 SPKDEQWKEKDQA 355
           +P  E  +    +
Sbjct: 120 APPPELLESGPSS 132

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 84.1 bits (208), Expect = 6e-19
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 217 PYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH 276
           P      +       V ++    FD+ V      VLLE Y PWC  C+  + + EK+A  
Sbjct: 2   PLGSEDDLEVKEENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANI 60

Query: 277 FKGLDNLV-IAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 333
            K  D  + +AKIDA++      +  V  YPT+     G     +      + + I A +
Sbjct: 61  LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG---QAVDYEGSRTQEEIVAKV 117

Query: 334 KEQLKEKDQSPKD 346
           +E  +     P +
Sbjct: 118 REVSQPDWTPPPE 130

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 221 SQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL 280
           SQP          ++  + FD++V N    +L+E Y PWC  C+  + + EK AK     
Sbjct: 121 SQPDWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 179

Query: 281 DNLV-IAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
              + +AK+DA+A      +  V  YPTL  +  G    P   +       I  ++ EQ
Sbjct: 180 SPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG---RPYDYNGPREKYGIVDYMIEQ 235

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 86.5 bits (213), Expect = 9e-19
 Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 7/139 (5%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-I 285
           +++  + ++   +    VL S     +E +  WC      +   ++LA   K     + +
Sbjct: 9   SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68

Query: 286 AKIDASANEHPKL----QVEEYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLKE 339
           A +D +   +  +     +  +PT+ F+ A  K         A ++ + +   + + L+ 
Sbjct: 69  AVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 340 KDQSPKDEQWKEKDQAPKD 358
              +        +     D
Sbjct: 129 HRDTWPPACPPLEPAKLND 147

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 220 KSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG 279
               +       V ++    FD+ V      VLLE Y PWC  C+  + + EK+A   K 
Sbjct: 7   GDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD 65

Query: 280 LD-NLVIAKIDASANEHP--KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
            D  + +AKIDA++      K  V  YPT+     G     +      + + I A ++E 
Sbjct: 66  NDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG---QAVDYDGSRTQEEIVAKVREV 122

Query: 337 LKEKDQSPKDEQWKEKDQA 355
            +  D +P  E        
Sbjct: 123 SQ-PDWTPPPEVTSGPSSG 140

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 83.1 bits (205), Expect = 1e-18
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-I 285
           + +  + ++   T    VL S     +E +  WC  C   +     LA+  K     + +
Sbjct: 9   SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYL 68

Query: 286 AKIDASANEHPKL----QVEEYPTLLFYPAG--DKANPIKVSARSSSKNIAAFIKEQLKE 339
           A +D +   +  +     +  +PT+ F+ A   + +  +   A +  + +   + + L+ 
Sbjct: 69  AALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 340 KDQSPKDEQWKEKDQAPKD 358
              +        +    ++
Sbjct: 129 HHDTWPPACPPLEPAXLEE 147

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +++ +V  +    F+  V+ S    L+E Y PWC  C+  + + +K A   K    + + 
Sbjct: 14  SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVG 71

Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
            ++A  ++    +  V+ +PT+  + A  K  P       + + I       L+
Sbjct: 72  AVNADKHQSLGGQYGVQGFPTIKIFGAN-KNKPEDYQGGRTGEAIVDAALSALR 124

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
               +  +TF++ VL      +++ Y PWC  C+  + + E LA+  KG   +   K+D 
Sbjct: 4   ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDC 61

Query: 291 SANEH--PKLQVEEYPTLLFYPAGDKANPI---KVSARSSSKNIAAFIKEQLKEKDQSPK 345
            A      K  ++ YP++  Y        I   ++++R +   IAA I  +L+      K
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKT-IAALIYGKLETLQSQVK 120

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 80.8 bits (199), Expect = 8e-18
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP- 296
            TF   V+   K VL++  T +    +    + ++LA++    D+L++A++  S      
Sbjct: 13  VTFYK-VIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKL 69

Query: 297 --------KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQ 348
                   KL  E YP    +  GD  NP+  +       I  ++K Q            
Sbjct: 70  NMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQGVYLGMPGCLPV 129

Query: 349 WKE 351
           +  
Sbjct: 130 YDA 132

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV 284
              ++ NV+++  + + +L+     D ++E Y PWC  C+    + E  A+  +    + 
Sbjct: 2   SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVN 57

Query: 285 IAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 342
           IAK+D +       +  +   PT+     G      +     + K+   FI ++  +  +
Sbjct: 58  IAKVDVTEQPGLSGRFIINALPTIYHCKDG---EFRRYQGPRTKKDFINFISDKEWKSIE 114

Query: 343 SPKDE 347
                
Sbjct: 115 PVSSW 119

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 69.2 bits (170), Expect = 7e-15
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIA 286
             + V  +    FDD +  +     ++ Y PWC  C+T +   E+L+K  F GL  + IA
Sbjct: 3   LGSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 60

Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           ++D +A  +   K  V  YPTLL +  G K +      R    ++  F+  Q
Sbjct: 61  EVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHS-GGR-DLDSLHRFVLSQ 110

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 70.2 bits (171), Expect = 8e-14
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +++ ++  +  K+FD  + N++   L+E Y PWC  C+  S    K AK   G+  +   
Sbjct: 14  DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAV 73

Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARS---------------SSKNI 329
             D + N+    K  V  +PTL+ +          +                   +   I
Sbjct: 74  NCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPI 133

Query: 330 AAFIKEQLKEKDQSPKDEQWKEKDQAPKDE 359
             F   +++   +                +
Sbjct: 134 VDFSLSRIRSYVKKFVRIDTLGSLLRKSPK 163

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 11/154 (7%)

Query: 212 HGTLTPYLKSQPIPD--NTNANVQIVVGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSK 268
           H ++       P P   + +++V  + G  F  +         ++  Y   C  C   + 
Sbjct: 3   HMSVAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYAS 62

Query: 269 QIEKLAKHFKGLDN------LVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKV 320
              K A   K             A ++ ++      K  +   P L F+   D     + 
Sbjct: 63  TFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEE 122

Query: 321 SARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQ 354
              SS +++A        ++ +S       +   
Sbjct: 123 CGTSSLEHVAFENSHLEVDELESEVRRLVNKHMV 156

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
             +          ++   T  C  C    K++  ++K  +G  N+  A+++   N     
Sbjct: 17  VENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAY 76

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSP 344
           K      PT +F         +       +  I   +     ++    
Sbjct: 77  KYDANIVPTTVFLDKEGNKFYVHQGLMRKNN-IETILNSLGVKEGHHH 123

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 221 SQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL 280
           S     + +    I  G  F D V+NS   V+++ +  WC  C+    ++EK+     G 
Sbjct: 4   SHHHHHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG- 62

Query: 281 DNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             +V+AK+D   +     + +V   PT+L    GD  +   V  +   + + AF+K+ +
Sbjct: 63  -KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVD-KFVGIKDEDQ-LEAFLKKLI 118

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
            +++      T+   V +S K V++  Y+P C  C+      E+ AK +    + V  +I
Sbjct: 5   GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRI 62

Query: 289 DASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 342
           + + N     K  V+  PT  F+  G      +V     S  +   +++ L+  ++
Sbjct: 63  NIATNPWTAEKYGVQGTPTFKFFCHGRPVW-EQVGQIYPSI-LKNAVRDMLQHGEE 116

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
            +VQ++        V    K V+++ +  WC  C+      EK++    G D +   K+D
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73

Query: 290 ASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
                    ++ +   PT +F+  G K + + V A      + A I +
Sbjct: 74  VDEQSQIAQEVGIRAMPTFVFFKNGQKIDTV-VGA--DPSKLQAAITQ 118

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293
               K  ++      K  +++ Y  WC  C+  +  +++LAK + G   +VI K+D    
Sbjct: 24  YNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKE 81

Query: 294 EH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS 343
           +       +   P++LF P   K   +   A   +      I E L +K+  
Sbjct: 82  QELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKAS-FKKAIDEFLLKKEGH 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 62/403 (15%), Positives = 120/403 (29%), Gaps = 118/403 (29%)

Query: 8   EAEEFLKKYQTFV---LGMFKK-FEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPD- 62
           E  E   +Y+  +      F   F+  D ++  K+  +  EI  +         ++  D 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---------IMSKDA 60

Query: 63  IKSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKL-TDINSAS------- 114
           +  T      + S+ +     ++ F ++++L+ +NY  F L++ + T+    S       
Sbjct: 61  VSGTLRLFWTLLSKQEE--MVQK-F-VEEVLR-INYK-F-LMSPIKTEQRQPSMMTRMYI 113

Query: 115 -----VHSSP---IKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKP 166
                +++      K  V        L+  L  L                          
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP----------------------AK 151

Query: 167 FLTLFGLEESKNTVVTA---FDNKAISKFL-------LESDLTPSNIEEFCSRLLHGTLT 216
            + + G+  S  T V        K   K         L++  +P  + E   +LL+  + 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QID 210

Query: 217 PYLKSQP-IPDNTNANVQIVVGKTFDDLVLNSHKDVLL---EVYTPWCV-----TCET-- 265
           P   S+     N    +  +  +    L    +++ LL    V           +C+   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 266 TSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTL-------LF-----YPAGD 313
           T++               V   + A+   H  L      TL       L          D
Sbjct: 271 TTR------------FKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 314 ------KANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWK 350
                   NP ++S       IA  I++ L   D        K
Sbjct: 318 LPREVLTTNPRRLSI------IAESIRDGLATWDNWKHVNCDK 354

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 234 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 293
             +              +L++ + PWC  C   + Q +  A    G   + +AKID  A+
Sbjct: 50  AGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAH 107

Query: 294 EH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
                + +++  P  + +  G +       AR +S+ +  F++ +L
Sbjct: 108 PAVAGRHRIQGIPAFILFHKGRELA-RAAGARPASE-LVGFVRGKL 151

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 15/115 (13%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 227 NTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +   +++ +   TF+ L+ +  K  L+      C  C+  +  +E+L  +++   +    
Sbjct: 1   SNAMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFY 58

Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
            +D    +    +  ++  P +L++  G+             + +   I + L++
Sbjct: 59  YVDVEEEKTLFQRFSLKGVPQILYFKDGEYKG-KMAGDVEDDE-VEQMIADVLED 111

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 229 NANVQIVVGKTFDDLVLNS---HKDVLLEVYTPWCVTCETTSKQI--EKLAKHFKGLDNL 283
            A+       +F + +  +    K + ++ +T WC  C+  SK +  + L   +    + 
Sbjct: 5   QADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHF 63

Query: 284 VIAKIDASANEHP----KLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK 338
           V  K+D    E      K  V  YPTLLF   +G+    + V A  + + +   +K  ++
Sbjct: 64  VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRL-VGAEDAPE-LLKKVKLGVE 121

Query: 339 EKDQ 342
            +  
Sbjct: 122 SEGH 125

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK-- 287
             ++ V   +F+  VL + K VL++ +  WC  C   +  +E +A  +     + I K  
Sbjct: 5   GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLN 62

Query: 288 IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           ID +     K  V   PTL  Y  G+ A    V A+  +  I   +++ + +
Sbjct: 63  IDENPGTAAKYGVMSIPTLNVYQGGEVAK-TIVGAKPKAA-IVRDLEDFIAD 112

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 243 LVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-- 298
           LV    K V+L++Y  WCV C+   K      +  K L + V+ + + +AN  +   L  
Sbjct: 26  LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85

Query: 299 --QVEEYPTLLFYPA 311
              V   PT+LF+  
Sbjct: 86  HLNVLGLPTILFFDG 100

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 220 KSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG 279
           +   + D+  +    V   +F   VL+S+K VL++ +  WC  C+  +  +E++A     
Sbjct: 2   RWGSMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT 61

Query: 280 LDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             +L +AK+D   N       QV   PTL+ +  G       V A+  +  +   + + +
Sbjct: 62  --DLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVK-RIVGAKGKAA-LLRELSDVV 117

Query: 338 KEKD 341
              +
Sbjct: 118 PNLN 121

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           ++ + VL S   V+++ + PWC  C+  +  I++LAK + G   + + K   D +     
Sbjct: 9   SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIAT 66

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           +  +   PT+LF+  G++     + A   S  +   I++ L
Sbjct: 67  QYNIRSIPTVLFFKNGERKE-SIIGAVPKST-LTDSIEKYL 105

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 221 SQPIPDNTNA-NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG 279
           S  +P  +++  +  +   +FD  VL +   +L++ +  WC   +  +  ++++A  ++G
Sbjct: 12  SGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG 71

Query: 280 LDNLVIAK--IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
              L +AK  ID +    PK  +   PTLL +  G+ A   KV A S  + +  F+   L
Sbjct: 72  --KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA-TKVGALSKGQ-LKEFLDANL 127

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--IDASANEHP 296
           TF ++VL S   VL++ + PWC  C   +  ++++A  +K    L   K   D S N   
Sbjct: 10  TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVAS 67

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           +  +   PT++ +  G K     + A   +  I   +++ L
Sbjct: 68  EYGIRSIPTIMVFKGGKKCE-TIIGAVPKAT-IVQTVEKYL 106

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
           +V  V  + F+  VL S K VL++ + PWC  C   +  IE+LAK ++G   + + K++ 
Sbjct: 2   SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNV 59

Query: 291 SANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             N +   +  +   PTLL +  G   +   V A+     +   I + L
Sbjct: 60  DENPNTAAQYGIRSIPTLLLFKNGQVVD-RLVGAQPKEA-LKERIDKHL 106

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK- 287
           +  +  +   +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   L +AK 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKL 58

Query: 288 -IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
            ID +    PK  +   PTLL +  G+ A   KV A S  + +  F+   L
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGEVAA-TKVGALSKGQ-LKEFLDANL 107

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
              ++  + FD+ V+ ++K VL++ +  WC  C       +K+A+ +KG    V  +++ 
Sbjct: 5   VTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNV 61

Query: 291 SANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
             N+    K  V   PT L +  G   +   V A      + + + + LK
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNGQLVD-SLVGAVDEDT-LESTVNKYLK 109

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
             V     +T D  +L     ++++ + PWC  C + +    + A    G   +   K++
Sbjct: 38  GEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVN 94

Query: 290 ASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS 343
             A      + ++   PT++ Y  G   + +   A   +     ++ EQL     S
Sbjct: 95  TEAEPALSTRFRIRSIPTIMLYRNGKMID-MLNGAVPKAP-FDNWLDEQLSRDPNS 148

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK- 287
           +  V  +    F+  VL + + VL+  +  WC  C+  S  I   A  +     L + K 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKL 63

Query: 288 -IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
            ID +     K +VE  P L         +       S  K + +F+   L
Sbjct: 64  EIDPNPTTVKKYKVEGVPALRLVKGEQILD-STEGVISKDK-LLSFLDTHL 112

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK--I 288
           +   V   +FD  VL +   VL++ +  WC  C+     + ++ K F G   + +AK  I
Sbjct: 3   HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNI 60

Query: 289 DASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
           D +       QV   PTL+    G   +  KV A   S+ + A+++ 
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGKVID-KKVGALPKSQ-LKAWVES 105

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
           A    V  + FD+  L  H  VL++ +  WC  C   +  +E++AK ++G   L++AK+D
Sbjct: 1   AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLD 57

Query: 290 ASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
              N     + +V   PT++ +  G     + V A+       A I++ L
Sbjct: 58  VDENPKTAMRYRVMSIPTVILFKDGQPVE-VLVGAQPKRN-YQAKIEKHL 105

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
            F    +     VL++ +  WC  C   +  +E+ A+       + +AK++   N     
Sbjct: 9   NFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTS 65

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
           +  +   PTL+ +  G       +  +   + + A + + L+
Sbjct: 66  QFGIMSIPTLILFKGGRPVK-QLIGYQPKEQ-LEAQLADVLQ 105

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
              + V   +  ++L  +  WC  C   S +++KL K++     + + K+D   NE    
Sbjct: 33  NIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLAR 90

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
           K  V+  PT++           K    SS+  + A IK+
Sbjct: 91  KFSVKSLPTIILLKNKTMLA-RKDHFVSSND-LIALIKK 127

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
               +      K  +++ Y  WC  C+  +  +E+L+K + G   + I K++        
Sbjct: 41  NHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPELA 98

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
               ++  PT+ F P   +   + + A S  + +  +I + L ++
Sbjct: 99  RDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQ-LKGYIDKVLLKQ 141

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
            F   V  +    L++ + PWC  C   S  +E+LA+   G   L + K++   +     
Sbjct: 42  GFAQEVAGA-PLTLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAA 98

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
           +  V   PTL+ +  G       V A      +   ++  L+ +
Sbjct: 99  RYGVRSVPTLVLFRRGAPVA-TWVGASPRRV-LEERLRPYLEGR 140

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 219 LKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK 278
           +K        +  +  +   +FD  VL +   +L++ +  WC  C+  +  ++++A  ++
Sbjct: 1   MKHHHHHHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ 60

Query: 279 GLDNLVIAK--IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           G   L +AK  ID +    PK  +   PTLL +  G+ A   KV A S  + +  F+   
Sbjct: 61  G--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA-TKVGALSKGQ-LKEFLDAN 116

Query: 337 LKEKDQSPK 345
           L        
Sbjct: 117 LAGSAMEST 125

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 238 KTFDDL--VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 295
           KT ++L   +   + VLL + T  C  C+   +++  + +++   + +   +I     + 
Sbjct: 6   KTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQE 62

Query: 296 --PKLQVEEYPTLLFY 309
              +  V   PT+L +
Sbjct: 63  IAGRYAVFTGPTVLLF 78

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 11/124 (8%)

Query: 239 TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
               ++  S    VL   ++     C   +  +E LA  + G    ++AK+D  A +   
Sbjct: 16  NLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIA 73

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQA 355
            +  +   PT+  +  G +        +         I+  L       ++   ++  Q 
Sbjct: 74  AQFGLRAIPTVYLFQNG-QPVDGFQGPQPEEA-----IRALLDXVLPREEELXAQQAMQL 127

Query: 356 PKDE 359
            ++ 
Sbjct: 128 MQES 131

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
           K FD   L SH+  +++ +  WC  C   +  IE+LA+ +     +   K+++  N    
Sbjct: 7   KNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSDENPDIA 62

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
            +  V   PT++F+  G+  +   + A    + I   IK  L E
Sbjct: 63  ARYGVMSLPTVIFFKDGEPVD-EIIGAVPREE-IEIRIKNLLGE 104

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 14/110 (12%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASANEHP 296
            +F+  V       +++         +   +     +K   K   +L+IA +        
Sbjct: 24  LSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGEL 80

Query: 297 ---------KLQVEEYPTLLFYPAG-DKANPIKVSARSSSKNIAAFIKEQ 336
                    K+  + +P++  +    D+   +      +  N+ AF+   
Sbjct: 81  ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 130

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 246 NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEHPKL---- 298
              + V++  ++  C  C+  +  +     +++  +     V+A +     E  +L    
Sbjct: 17  AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRY 74

Query: 299 QVEEYPTLLFYPAGDKANPIKVSARSS-SKNIAAFIK--EQLKEKDQSPKDEQWK 350
           +V   PT +F     KA   +   R   S+  A F+K   Q+  K  +  +    
Sbjct: 75  RVPGTPTFVFLVP--KAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGEGHHH 127

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 16/113 (14%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
           +V  V        +++     +      WC  C+T  + +EK+A  F     +  AK+DA
Sbjct: 20  SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDA 76

Query: 291 SANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSARSSSKNIAAFIKE 335
             N     K +V + PT +   +G        ANP  +  +     +   IK+
Sbjct: 77  DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQK-----LRDIIKD 124

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 232 VQIVVGKTFDDLVLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
           ++ + G  + + V N+ KD  V++ +Y      C   ++ +  LA+ F         K  
Sbjct: 12  LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAI 68

Query: 290 ASANEHPKLQVEEYPTLLFYPAGDKANPI 318
            + +          PT+  Y  G      
Sbjct: 69  VN-SCIEHYHDNCLPTIFVYKNGQIEGKF 96

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPK---LQVE 301
             S   +++ ++  WC  C+    +  +  +  +   N V+  ++       +       
Sbjct: 43  AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGG 102

Query: 302 EYPTLLFY-PAGDKANPI-----KVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQA 355
             P +LF  P+G     I       S +    +    ++  +KE  +    + +++K   
Sbjct: 103 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQG-MKEAQERLTGDAFRKKHL- 160

Query: 356 PKDEL 360
            +DEL
Sbjct: 161 -EDEL 164

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
            FD  V +     L++ +   C  C+  +  +E+LA  ++G     I K+D   N     
Sbjct: 12  DFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAA 67

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           K +V   PTL+ +  G   +   V  +     +A  + + L
Sbjct: 68  KYEVMSIPTLIVFKDGQPVD-KVVGFQPKEN-LAEVLDKHL 106

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-- 295
           +   + +  +   VL++ +  WC  C+   + +  +A+      ++   K+D   N +  
Sbjct: 13  EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDKNGNAA 69

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN-IAAFIKEQLKEK 340
               V   P L F                +  + I A I E+ K  
Sbjct: 70  DAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADI-EKFKHH 114

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWC--------------VTCETTSKQIEKLAKH 276
            +  +   +FD  VL +   +L++ +  WC                C+  +  ++++A  
Sbjct: 4   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADE 63

Query: 277 FKGLDNLVIAK--IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK 334
           ++G   L +AK  ID +    PK  +   PTLL +  G+ A   KV A S  + +  F+ 
Sbjct: 64  YQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA-TKVGALSKGQ-LKEFLD 119

Query: 335 EQL 337
             L
Sbjct: 120 ANL 122

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK 287
           +  ++  +   T    ++  +  ++++ Y  WC  C+     + KL + +    ++   K
Sbjct: 10  SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVK 66

Query: 288 IDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
            D   +     + +V   PT +    G     I + A      +   IK+
Sbjct: 67  CDVDESPDIAKECEVTAMPTFVLGKDGQLIGKI-IGAN--PTALEKGIKD 113

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 232 VQIVVGKTFDDLVLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
            ++  G+ F + +    K   +++ +Y      C+  +  +  LA  +     +   KI 
Sbjct: 115 YELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIK 171

Query: 290 ASANE-HPKLQVEEYPTLLFYPAGD-KANPIKVSA----RSSSKNIAAFIKEQ--LKEKD 341
           AS      +   +  PTLL Y  G+  +N I V+        + ++ +F+ E   L EK+
Sbjct: 172 ASNTGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKE 231

Query: 342 QSPKDEQWKEKD 353
               ++   E+D
Sbjct: 232 MHVLEQTNMEED 243

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} Length = 124

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 4  NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAK 57
            V  A EF+   +  V+G F+  E                + F  +++ EV  
Sbjct: 27 TDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLT 80

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 233 QIVVGKTFDDLVLNSH-KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           ++   K  D  + ++  K ++L         C      + K +          I  +D  
Sbjct: 7   KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVD 64

Query: 292 ANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
                     +   P+ +F+  G +   +   +   +K + +F  +Q
Sbjct: 65  QTAVYTQYFDISYIPSTVFFFNG-QHMKVDYGSPDHTKFVGSFKTKQ 110

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 232 VQIVVGKTFDDLVLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
           ++ + G  + + V N+ +D  V++ +Y      C   ++ +  LA+ F         K  
Sbjct: 5   LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAI 61

Query: 290 ASANEHPKLQVEEYPTLLFYPAGD 313
            + +          PT+  Y  G 
Sbjct: 62  VN-SCIQHYHDNCLPTIFVYKNGQ 84

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQ 299
           D  +NS +   +  Y+P C  C   +    + AK   GL  L I  ++   +        
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL--LRIGAVNCGDDRMLCRMKG 165

Query: 300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           V  YP+L  + +G     +K +   S +++ AF  + +
Sbjct: 166 VNSYPSLFIFRSG--MAAVKYNGDRSKESLVAFAMQHV 201

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 218 YLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHF 277
               + +    +  +  +  + F  L+     D +L VY+  C  C     Q+ + +K  
Sbjct: 4   SYVKEGLAVLEDGRLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASKEV 60

Query: 278 KG-----LDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA 330
                  +   +I + + SA      K  VE  PTL+FY  G   + + V A        
Sbjct: 61  DVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKL-VGATP------ 113

Query: 331 AFIKEQLKEK 340
                   EK
Sbjct: 114 ---WSLKVEK 120

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
           +F      S   VL + + PWC   +  +  +E+L +       L I KID   N+    
Sbjct: 10  SFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAG 65

Query: 297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
           K  V   PTLL    G+      V  +     +   + + L E 
Sbjct: 66  KYGVMSIPTLLVLKDGEVVE-TSVGFKPKEA-LQELVNKHLLEH 107

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           V+IV  +   D +++ ++ V+++ +  WC  C+  +   E+ +K +     +V  K+D  
Sbjct: 10  VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVD 66

Query: 292 ANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSA 322
                  K  +   PT   Y  G        AN   +  
Sbjct: 67  EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQ 105

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 240 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PK 297
                     D ++  +   C  C+   K ++K          + I+ +D+ A      +
Sbjct: 11  AGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDSEARPELMKE 67

Query: 298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
           L  E  PTL+F   G  A                    +L+ 
Sbjct: 68  LGFERVPTLVFIRDGKVAK----------VFSGIMNPRELQA 99

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 226 DNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVI 285
            + +  V      +  D  +   K V+++ Y  WC  C+  +  IEK ++ +        
Sbjct: 2   HHHHHMVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADF 58

Query: 286 AKIDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSA 322
            K+D         K +V   PTLL +  G +      ANP  +  
Sbjct: 59  YKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQ 103

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 231 NVQIVVGK-TFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +V ++  K  +D  +      HK ++++    WC  C+  +   E L+  +     ++  
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFL 60

Query: 287 KIDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSAR 323
           K+D  A         +   PT   Y  G K      A+  K+ A 
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKAL 105

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 233 QIVVGKTFDDLVLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
           ++  G+ F + +    K   +++ +Y      C+  +  +E LA  +     +   KI A
Sbjct: 103 ELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRA 159

Query: 291 SANEH-PKLQVEEYPTLLFYPAGD 313
           S      +   +  PTLL Y  G+
Sbjct: 160 SNTGAGDRFSSDVLPTLLVYKGGE 183

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 230 ANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
             V  V   TF  +V  +  K V+L+++T WC   +  + + EKLA+ +     ++  K+
Sbjct: 5   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD---VIFLKL 61

Query: 289 DASANEHP----KLQVEEYPTLLFYPAGDK 314
           D +  E+     +L +   PT         
Sbjct: 62  DCNQ-ENKTLAKELGIRVVPTFKILKENSV 90

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 230 ANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
             V  V   TF  +V  +  K V+L+++T WC  C+  + + EKLA+ +     ++  K+
Sbjct: 18  GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD---VIFLKL 74

Query: 289 DASANEHP----KLQVEEYPTLLFYPAGDK 314
           D +  E+     +L +   PT         
Sbjct: 75  DCNQ-ENKTLAKELGIRVVPTFKILKENSV 103

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 232 VQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            Q+      D  +   S K V+L+ +  WC  C+  S ++ +L+  F   DN+V+ K+D 
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDV 60

Query: 291 SANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
              E    +  +   PT +F   G K       A  ++K +   IK  +
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNGVKVEEF-AGA--NAKRLEDVIKANI 106

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 232 VQIVVGKTFDDL---VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
           +     +T+++       S   V+++    WC  C   +     LAK      N++  K+
Sbjct: 19  IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKV 75

Query: 289 DASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSAR 323
           D    +       ++  PT +F   G        A   ++ + 
Sbjct: 76  DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQST 118

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQ 299
           +    S K ++++    WC  C+  +    +LAK F    N+   K+D    +    +  
Sbjct: 20  EKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAVAEEWN 76

Query: 300 VEEYPTLLFYPAGDK 314
           VE  PT +F   G  
Sbjct: 77  VEAMPTFIFLKDGKL 91

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--P 296
           T+        K ++L  +T W   C+   +  E ++       N+    IDA  N     
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISE 70

Query: 297 KLQVEEYPTLLFYPAGDK------ANPIKVSA 322
             ++   P  +    G        A+P +  +
Sbjct: 71  LFEISAVPYFIIIHKGTILKELSGADPKEYVS 102

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 226 DNTNANVQIVVGKTFDDLVLNSHKDVLLEV--YTPWCVTCETTSKQIEKLAKHFKGLDNL 283
            + + +V+ +  KT     L++  D L+ V     WC   +        L++ +    N+
Sbjct: 7   HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NV 63

Query: 284 VIAKIDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSAR 323
           +  ++D    +    + +V+  PT  F+  G K      AN  K+ A 
Sbjct: 64  IFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEAT 111

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 244 VLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVE 301
              + K V+++    WC  C   +     LAK F    N V  K+D    +    +  VE
Sbjct: 30  ANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKVDVDELKPIAEQFSVE 86

Query: 302 EYPTLLFYPAGDK------ANPIKVSAR 323
             PT LF   GD       A   +++A+
Sbjct: 87  AMPTFLFMKEGDVKDRVVGAIKEELTAK 114

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 230 ANVQIVVGKTFDDLVLNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK 287
           + +  +      + +L  HK+  V+++ +  WC  C+T +   ++L++ +      +  K
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA----IFVK 68

Query: 288 IDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSA 322
           +D    E    K  +   PT +    G+K      A+  KV  
Sbjct: 69  VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVED 111

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 230 ANVQIVVGKT-FDDLV-LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAK 287
           A V+ V     F++L+ L +   +++  + PW   C   ++ + +LAK       +   K
Sbjct: 12  AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVK 68

Query: 288 IDASANEH--PKLQVEEYPTLLFYPAGDK------ANPIKVSAR----SSSKNIAAFIKE 335
           ++A        K ++   PT LF+    K      A+  +++ +    +SS +     K 
Sbjct: 69  LEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKV 128

Query: 336 QLKEKDQSPKDEQWKE 351
           ++     S   ++   
Sbjct: 129 KVDTDPNSSSVDKLAA 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	100.0
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.97
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.95
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.95
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.95
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.94
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.94
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.93
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.92
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.91
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.9
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.87
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.85
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.84
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.84
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.83
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.83
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.81
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.81
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.81
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.81
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.79
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.79
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.77
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.76
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.76
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.76
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.76
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.76
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.75
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.75
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.75
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.75
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.74
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.74
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.74
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.73
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.73
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.73
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.73
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.73
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.73
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.73
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.73
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.73
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.73
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.72
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.72
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.72
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.72
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.72
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.72
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.72
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.71
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.71
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.7
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.7
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.7
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	99.7
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.69
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.69
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.69
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.68
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.68
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.68
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.68
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.68
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.67
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.66
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.66
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.66
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.66
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.66
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.66
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.65
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.65
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.65
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.65
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.64
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.64
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.63
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.63
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.62
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.62
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.62
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.62
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.62
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.62
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.61
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.61
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.61
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.4
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.6
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.6
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.59
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.59
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.59
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.59
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.59
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.58
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.58
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.57
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.57
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.57
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.55
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.55
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.55
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.51
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.51
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.49
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.48
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.47
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.46
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.45
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.45
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.44
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.43
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.42
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.41
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.34
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.03
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.34
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.32
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.32
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.32
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.31
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.31
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.3
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.3
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.3
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.29
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.29
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.29
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.28
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.28
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.27
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.26
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.26
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.26
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.26
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.25
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.25
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.25
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.25
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.25
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.25
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.25
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.24
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.24
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.23
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.23
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.22
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.22
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.22
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.22
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.22
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.21
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.21
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.21
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.2
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.2
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.2
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.2
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.2
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.19
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.19
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.18
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.17
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.17
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.17
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.17
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.17
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.16
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.15
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.15
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.14
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.14
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.14
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.13
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.13
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.13
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.13
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.13
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.12
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.12
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.12
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.11
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.1
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.1
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.1
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.09
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.08
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.08
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.08
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.08
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.07
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.07
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.07
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.06
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.06
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.05
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.05
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.05
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.04
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.04
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.03
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.03
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.03
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.03
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.03
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.03
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.02
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.01
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.01
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.0
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.99
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.99
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.98
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.97
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.96
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.93
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.92
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.91
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.91
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.41
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.88
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.88
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.87
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.87
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.87
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.87
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.87
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.86
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.86
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.86
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.85
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.84
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.84
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.83
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.83
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.8
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.8
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.8
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.79
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.78
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.77
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.76
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.75
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.75
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.73
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.72
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.72
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.7
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.16
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.68
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.67
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.66
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.66
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.66
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.66
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.66
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.64
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.08
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.62
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.61
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.6
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.6
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.6
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.58
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.56
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.55
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.51
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.51
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.51
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.5
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.49
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	97.87
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.48
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.46
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.46
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.45
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.42
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.4
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.39
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.38
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.38
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.37
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.36
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.36
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	98.35
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.32
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.31
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.29
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.28
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.28
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.28
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.27
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.27
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.23
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.21
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.2
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.19
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.19
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.17
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.16
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.15
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.11
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.11
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.1
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.1
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.1
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.09
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.08
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.08
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.08
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.08
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.07
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.06
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.04
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.02
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.0
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.0
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.99
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.96
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.95
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.94
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.93
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.91
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	97.9
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	97.89
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.89
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.88
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.85
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	97.83
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.83
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.81
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	97.79
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.76
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.72
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.7
3me7_A	170	Putative uncharacterized protein; electron transfe	97.69
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.69
2lrt_A	152	Uncharacterized protein; structural genomics, thio	97.68
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.68
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.66
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	97.65
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	97.63
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	97.63
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	97.62
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.61
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.59
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.57
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.57
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.56
1ttz_A	87	Conserved hypothetical protein; structural genomic	97.56
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.56
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.53
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.53
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.52
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.5
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.49
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.46
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.44
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.44
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	97.44
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.43
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.42
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.4
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.4
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.39
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	97.38
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.36
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.35
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.34
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.33
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.32
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.29
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.27
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.23
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.21
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.19
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.19
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.19
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.14
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.13
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.11
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.1
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.09
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.07
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.06
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.06
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.99
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.98
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	96.97
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.91
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	96.9
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	96.89
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	96.87
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	96.87
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	96.86
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.84
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.84
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	96.8
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	95.84
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	96.79
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.77
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	96.77
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	96.76
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	96.73
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	96.68
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	96.64
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	96.63
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	96.61
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.62
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.59
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.5
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	96.48
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.47
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.46
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.46
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.37
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	96.31
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	96.29
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.19
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.14
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	96.14
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.08
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	96.05
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	96.01
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	96.01
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	95.99
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	95.96
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	95.89
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	95.88
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	95.87
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	95.85
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	95.85
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	95.58
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	95.52
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	95.51
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	95.48
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	95.47
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	95.38
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	95.38
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	95.33
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	95.21
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	94.98
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	94.95
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	94.78
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.78
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.73
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	94.71
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	94.63
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	94.56
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	94.45
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	94.34
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	94.25
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	94.2
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	94.15
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	93.78
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	93.76
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	93.28
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	93.26
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	92.79
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	92.72
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	92.58
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	91.91
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	91.75
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	91.74
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	91.48
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	91.46
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	90.69
1kte_A	105	Thioltransferase; redox-active center, electron tr	90.57
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	90.54
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	90.48
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	90.31
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	90.26
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	89.67
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	89.51
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	89.4
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	89.12
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	88.69
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	88.65
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	88.54
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	88.48

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=2.9e-56  Score=407.90  Aligned_cols=332  Identities=29%  Similarity=0.532  Sum_probs=298.0

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      +|+|.+++++|++.++++|||||++.+++..+.|.++|+..+++.|++++++++|++++++    .|+|++||++++...
T Consensus        21 ~l~~~~~~~~~~~~~~~~vvgff~~~~~~~~~~f~~~A~~~~~~~F~~t~~~~v~~~~~v~----~~~i~lfk~f~~~~~   96 (361)
T 3uem_A           21 TLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRN   96 (361)
T ss_dssp             ECCSHHHHHHHHHTSSEEEEEECSCTTSHHHHHHHHHHHHCSSSCEEEECCHHHHHHTTCS----SSEEEEEESSTTSEE
T ss_pred             ecCCHHHHHHHHhcCCcEEEEEEcCCCchHHHHHHHHHhcCCCceEEEECcHHHHHHhCCC----CCeEEEEEecCCCcc
Confidence            4789999999999999999999999999999999999955589999999999999999996    599999999888889


Q ss_pred             ccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCc-eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC
Q 018164           82 GYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIK-LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA  159 (360)
Q Consensus        82 ~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~-~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~  159 (360)
                      .|+|+++.++|.+||+.++.|+|.+++++++..++..+.+ ++++||++| ++|+++.+.|+++|+++++++.|+.+||+
T Consensus        97 ~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~  176 (361)
T 3uem_A           97 NFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSD  176 (361)
T ss_dssp             ECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTT
T ss_pred             ccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCC
Confidence            9999999999999999999999999999999998877654 567788888 89999999999999999999999999999


Q ss_pred             CcccchhHHhhcCCCC--CCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHHhcCccCCccccCCCCCC-CCCceEEE
Q 018164          160 DEDLAKPFLTLFGLEE--SKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDN-TNANVQIV  235 (360)
Q Consensus       160 ~~~~~~~l~~~~gi~~--~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~-~~~~v~~l  235 (360)
                      ... ..++|+.|||+.  + |+++++..++...+|.+. +.++.+.|.+|++++++|+++|..+|+++|+. ..+.|..+
T Consensus       177 ~~~-~~~~~~~fgi~~~~~-P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l  254 (361)
T 3uem_A          177 HTD-NQRILEFFGLKKEEC-PAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVL  254 (361)
T ss_dssp             SGG-GHHHHHHTTCCTTTC-SEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEE
T ss_pred             hHH-HHHHHHHcCCCccCC-ccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEe
Confidence            321 148999999996  6 888544433555678764 67999999999999999999999999999987 47889999


Q ss_pred             cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCcc
Q 018164          236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKA  315 (360)
Q Consensus       236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~  315 (360)
                      ++++|++.+.+++++++|+||||||++|+.+.|.|+++++.+++..++.++.+|++.+....++|.++||+++|++|...
T Consensus       255 ~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~~~~~~~~~  334 (361)
T 3uem_A          255 VGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASADR  334 (361)
T ss_dssp             CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBCSSCCCCSSSEEEEECSSSSC
T ss_pred             ecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccchhhcCCcccCeEEEEECCCCc
Confidence            99999999988899999999999999999999999999999987667999999999998888999999999999887544


Q ss_pred             CceEecCCCCHHHHHHHHHHhcCC
Q 018164          316 NPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       316 ~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      .+.+|.|.++.+.|.+||+++.+.
T Consensus       335 ~~~~~~G~~~~~~l~~~l~~~~~~  358 (361)
T 3uem_A          335 TVIDYNGERTLDGFKKFLESGGQD  358 (361)
T ss_dssp             CCEECCSCSSHHHHHHHHTTTSCS
T ss_pred             ceeEecCCCCHHHHHHHHHhcCCC
Confidence            578999999999999999988764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=1e-48  Score=371.17  Aligned_cols=347  Identities=24%  Similarity=0.441  Sum_probs=291.5

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEe------
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVK------   74 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~------   74 (360)
                      ++.|.+++++|++.+++++||||.+.++...+.|.++| .+++++.|+++++++++++++++    .+.+++||      
T Consensus       114 ~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~v~----~~~i~~~~p~~~~~  189 (481)
T 3f8u_A          114 PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDN----GEGIILFRPSHLTN  189 (481)
T ss_dssp             EECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCSS----SEEEEEECCGGGCB
T ss_pred             ecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHhccCceEEEECCHHHHHHhCCC----CCcEEEEecccccC
Confidence            46789999999999999999999988999999999999 78899999999999999999996    46699999      


Q ss_pred             cCCCCccccC-CCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec-c-c---hHHHHHHHHHHHHhhc
Q 018164           75 SEPDRYTGYE-ETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA-D-D---LKSLLEPLEDIARNFK  148 (360)
Q Consensus        75 ~~~~~~~~y~-g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~-~---~~~~~~~~~~la~~~~  148 (360)
                      +.++....|+ |.++.++|.+||..+..|+|.++|.+|+..++..  +..++|+... . .   .+.+...++++|++|+
T Consensus       190 ~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~  267 (481)
T 3f8u_A          190 KFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFL  267 (481)
T ss_dssp             TTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTTS--SEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcCC--CceEEEEecccccchhhHHHHHHHHHHHHHHhc
Confidence            5566778898 8899999999999999999999999999988754  4445555433 2 2   2336788999999999


Q ss_pred             Cc---eEEEEEeCCCcccchhHHhhcCCCCC--CCceEEEEeCCCcccccCCCCCCHH--HHHHHHHHHhcCccCCcccc
Q 018164          149 GK---IMFTAVDIADEDLAKPFLTLFGLEES--KNTVVTAFDNKAISKFLLESDLTPS--NIEEFCSRLLHGTLTPYLKS  221 (360)
Q Consensus       149 ~~---i~f~~vd~~~~~~~~~l~~~~gi~~~--~p~~~~~~~~~~~~~y~~~~~~~~~--~i~~fi~~~~~g~~~~~~~s  221 (360)
                      ++   +.|+++|+..+.   ..++.||++..  ..|.+++.+ ..+.+|.|.+.++.+  +|.+|++++++|++.++++|
T Consensus       268 ~k~~~i~F~~~D~~~~~---~~l~~~gl~~~~~~~P~~~i~~-~~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s  343 (481)
T 3f8u_A          268 DAGHKLNFAVASRKTFS---HELSDFGLESTAGEIPVVAIRT-AKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKS  343 (481)
T ss_dssp             HTTCCCEEEEEETTTTH---HHHGGGTCCCCTTCSCEEEEEC-SSSCEEECCSCCCTTSHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCceEEEEEEcHHHHH---HHHHHcCCCcccCCCcEEEEEc-CCCcccCCCcccCccHHHHHHHHHHHhcCCccccccc
Confidence            88   999999999875   88999999832  234445665 456788888889999  99999999999999999999


Q ss_pred             CCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-CCCC
Q 018164          222 QPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQV  300 (360)
Q Consensus       222 e~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-~~~i  300 (360)
                      +++|+...+.|..+++++|++.+.+++++++|.|||+||++|+.+.|.|+++++.+++..++.++.+|++.++++ .+++
T Consensus       344 ~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~~~~~~~v  423 (481)
T 3f8u_A          344 EPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEV  423 (481)
T ss_dssp             CCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSCCCTTCCC
T ss_pred             CCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchhhHhhCCC
Confidence            999998889999999999999998889999999999999999999999999999998766899999999999775 6899


Q ss_pred             CCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCCCCC
Q 018164          301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQWKEKDQAPKDEL  360 (360)
Q Consensus       301 ~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~e~~~~~~~~~~de~  360 (360)
                      .++||+++|++|+++.+++|.|.++.+.|.+||.++++......  ...++.+++.++||
T Consensus       424 ~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~dl  481 (481)
T 3f8u_A          424 RGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQ--EEKPKKKKKAQEDL  481 (481)
T ss_dssp             CSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCSSCCCCC--CC------------
T ss_pred             cccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCCccccc--chhhhhhhhccccC
Confidence            99999999999988667899999999999999999988655421  12234445666665

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=3.7e-46  Score=355.41  Aligned_cols=320  Identities=22%  Similarity=0.355  Sum_probs=280.3

Q ss_pred             HHHHhhhCC--eEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCccccCC
Q 018164            9 AEEFLKKYQ--TFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEE   85 (360)
Q Consensus         9 ~~~~~~~~~--~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g   85 (360)
                      +++|++.++  +.+||||.+.++...+.|.++| .+++++.|+++.  ++++++++      + +++|++.+ ....|+|
T Consensus       131 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A~~~~~~~~F~~~~--~~~~~~~~------~-i~l~~~~~-~~~~~~g  200 (504)
T 2b5e_A          131 LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAE--NADDDFKL------S-IYLPSAMD-EPVVYNG  200 (504)
T ss_dssp             HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEE--CTTSCCEE------E-EEETTEEE-EEEECCS
T ss_pred             HHHHHhcCCCceEEEEEeCCCCchHHHHHHHHHHHhhcCcEEEEEH--HHHHhcCC------e-EEecCCCC-cccccCC
Confidence            777888888  9999999988888999999999 778999999987  67777665      2 88999866 6778999


Q ss_pred             C-C---ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Q 018164           86 T-F---IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADE  161 (360)
Q Consensus        86 ~-~---~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~  161 (360)
                      + +   +.+.|.+||..+..|++.++|.+++..++..+.+.+++++......+.+...|+++|+++++++.|+++|+..+
T Consensus       201 ~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~i~F~~id~~~~  280 (504)
T 2b5e_A          201 KKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKF  280 (504)
T ss_dssp             CHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred             cccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCCeeEEEEEehhhh
Confidence            8 7   89999999999999999999999999999988888887776544447889999999999999999999999977


Q ss_pred             ccchhHHhhcCCCCCCCceEEEEeCCCcccccCC--CC-----------CCHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          162 DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE--SD-----------LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       162 ~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~--~~-----------~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                      .   .+|+.||+ ....|.+++.+...+.+|.+.  ++           ++.+.|..|+.+++.|++.|..+|+++|...
T Consensus       281 ~---~~~~~~gl-~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~  356 (504)
T 2b5e_A          281 G---RHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQ  356 (504)
T ss_dssp             T---THHHHTTC-CSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCC
T ss_pred             H---HHHHHcCC-cccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChhhhcCCCCccc
Confidence            5   89999999 433444467777667778775  55           8999999999999999999999999999888


Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCCCCCCCCCCCCcEEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK-GLDNLVIAKIDASANEHPKLQVEEYPTLL  307 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~~~~~~i~~~Pti~  307 (360)
                      .+.|..+++++|++.+.+.+++++|.||||||++|+.+.|.|+++++.+. +..++.++.+|++.++...++|.++||++
T Consensus       357 ~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~~~v~~~Pt~~  436 (504)
T 2b5e_A          357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV  436 (504)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEE
T ss_pred             cccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccccCCceecCeEE
Confidence            88999999999999998889999999999999999999999999999986 33479999999999966669999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      +|++|+...+.+|.|.++.+.|.+||++++.....
T Consensus       437 ~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~  471 (504)
T 2b5e_A          437 LYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVD  471 (504)
T ss_dssp             EECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCCC
T ss_pred             EEeCCceecceEecCCCCHHHHHHHHHhcCCCCCC
Confidence            99998775567899999999999999999876543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=4.9e-36  Score=299.89  Aligned_cols=301  Identities=19%  Similarity=0.255  Sum_probs=253.6

Q ss_pred             HHHHHHHhhhCCeEEEEEecCCCC-ccHHHHHHHH-hcC-CCceEEEe---ccHHHHHHcCCCCCCCCCEEEEEecCC-C
Q 018164            6 VNEAEEFLKKYQTFVLGMFKKFEG-SDYEEFVKTA-AAD-NEIQFVET---SNFEVAKVLYPDIKSTDHFLGIVKSEP-D   78 (360)
Q Consensus         6 ~~~~~~~~~~~~~~vv~ff~~~~~-~~~~~f~~~a-~~~-~~~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~~~~~-~   78 (360)
                      .+.+++.+.+ .+.+|.|....+. ...+.|.++| .+. ..+.|+.+   .++.+|++++++    .|++++|++++ +
T Consensus       342 ~~~f~~~~~~-~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~----~p~i~l~~~~~~e  416 (780)
T 3apo_A          342 ANQLEDRLAH-HRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF----QPSLAVFKGQGTK  416 (780)
T ss_dssp             HHHHHHHHTT-SEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCC----SCEEEEEESSTTS
T ss_pred             HHHHHHHhcc-CCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhcccc----CChhhhccCCCcc
Confidence            3445544434 5777777754433 3457888888 444 67899887   567899999996    49999999977 5


Q ss_pred             CccccCCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEe
Q 018164           79 RYTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVD  157 (360)
Q Consensus        79 ~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd  157 (360)
                      .+..|+|.++.++|.+|+..+..|.|.+++.+++..+  .+.+++|.||++| ++|+++.+.|.++|+++++++.|+.||
T Consensus       417 ~~~~~~g~~~~~~i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd  494 (780)
T 3apo_A          417 EYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLD  494 (780)
T ss_dssp             SEEECCSCCCHHHHHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             eeeecccHhhHHHHHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEe
Confidence            5778999999999999999999999999999999988  6678899999999 999999999999999999999999999


Q ss_pred             CCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcC
Q 018164          158 IADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG  237 (360)
Q Consensus       158 ~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~  237 (360)
                      ++...   .+++.|||+++ |+++++ ..+  ..+.+.|.++.+.|.+|++++++                 ++|..+++
T Consensus       495 ~~~~~---~~~~~~~v~~~-Pt~~~~-~~g--~~~~~~g~~~~~~l~~fi~~~~~-----------------~~v~~l~~  550 (780)
T 3apo_A          495 CTIHE---GLCNMYNIQAY-PTTVVF-NQS--SIHEYEGHHSAEQILEFIEDLRN-----------------PSVVSLTP  550 (780)
T ss_dssp             TTTCH---HHHHHTTCCSS-SEEEEE-ETT--EEEEECSCSCHHHHHHHHHHHHS-----------------CSEEECCH
T ss_pred             CCCCH---HHHHHcCCCcC-CeEEEE-cCC--ceeeecCcccHHHHHHHHHhhcc-----------------cceeecCc
Confidence            99875   89999999998 998544 443  34677899999999999999985                 24888999


Q ss_pred             cccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCC
Q 018164          238 KTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       238 ~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~  313 (360)
                      ++|++++.+.  +..++|.||+|||++|+.+.|.|+++|+.+++  ++.|+.+||+.+ .+ ..++++++|++++|+.|.
T Consensus       551 ~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~  628 (780)
T 3apo_A          551 STFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG--LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKS  628 (780)
T ss_dssp             HHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCS
T ss_pred             ccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--CeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCC
Confidence            9999998654  46789999999999999999999999999987  799999999998 44 468999999999999886


Q ss_pred             cc--CceEecC-CCCHHHHHHHHHHhcCC
Q 018164          314 KA--NPIKVSA-RSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       314 ~~--~~~~~~g-~~~~~~l~~~i~~~~~~  339 (360)
                      ..  .++.|.| .++.++|.+||.+.+..
T Consensus       629 ~~~~~~~~y~g~~~~~~~l~~fi~~~~~~  657 (780)
T 3apo_A          629 SKAYQYHSYNGWNRDAYSLRSWGLGFLPQ  657 (780)
T ss_dssp             SSCCSCEECCCSCCSHHHHHHHHHTTSCC
T ss_pred             cCccchhhcCCCCCCHHHHHHHHhhhccc
Confidence            52  3678999 89999999999998754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=1.6e-35  Score=296.10  Aligned_cols=293  Identities=17%  Similarity=0.253  Sum_probs=250.5

Q ss_pred             CCeEEEEEecCCCC---ccHHHHHHHH-hcCCCceEEEec---cHHHHHHcCCCCCCCCCEEEEEecCCCCccccCCCCC
Q 018164           16 YQTFVLGMFKKFEG---SDYEEFVKTA-AADNEIQFVETS---NFEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYEETFI   88 (360)
Q Consensus        16 ~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~g~~~   88 (360)
                      ..+++|.|+.++|+   .....|.++| ++.+++.|+.+.   ++++|+.+++.   +.|++++++.+  ....|.|..+
T Consensus       455 ~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~---~~Pt~~~~~~g--~~~~~~g~~~  529 (780)
T 3apo_A          455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQ---AYPTTVVFNQS--SIHEYEGHHS  529 (780)
T ss_dssp             CSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCC---SSSEEEEEETT--EEEEECSCSC
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCC---cCCeEEEEcCC--ceeeecCccc
Confidence            46888999999886   5678999999 666889998853   67799999998   79999999753  3367889999


Q ss_pred             hHHHHHHHhhccCCceeecCcccccccccC---CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccc
Q 018164           89 MDKILQFLNYNKFPLVTKLTDINSASVHSS---PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLA  164 (360)
Q Consensus        89 ~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~---~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~  164 (360)
                      .++|.+||.....|.|..++.++++.+...   +..+++.||++| ++|+++.+.|.++|+.+++++.|+.+||+.+.  
T Consensus       530 ~~~l~~fi~~~~~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~~~~--  607 (780)
T 3apo_A          530 AEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYH--  607 (780)
T ss_dssp             HHHHHHHHHHHHSCSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTTH--
T ss_pred             HHHHHHHHHhhcccceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCeEEEEEECcchH--
Confidence            999999999999999999999999987654   356799999999 99999999999999999999999999999875  


Q ss_pred             hhHHhhcCCCCCCCceEEEEeCCCc---ccccCCC-CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccc
Q 018164          165 KPFLTLFGLEESKNTVVTAFDNKAI---SKFLLES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTF  240 (360)
Q Consensus       165 ~~l~~~~gi~~~~p~~~~~~~~~~~---~~y~~~~-~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~  240 (360)
                       .+|+.+||+++ |+++ ++..+..   ....|.| .++.+.|.+|+.+...                 ..+..+++.+|
T Consensus       608 -~l~~~~~v~~~-Pti~-~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~-----------------~~v~~l~~~~~  667 (780)
T 3apo_A          608 -SFCTQENVQRY-PEIR-FYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP-----------------QASIDLTPQTF  667 (780)
T ss_dssp             -HHHHHTTCCSS-SEEE-EECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSC-----------------CCSEEECHHHH
T ss_pred             -HHHHHcCCCCC-CeEE-EEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcc-----------------cccccCCHHHH
Confidence             89999999998 9985 5544332   2344688 7999999999998652                 23778999999


Q ss_pred             cccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCce
Q 018164          241 DDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPI  318 (360)
Q Consensus       241 ~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~  318 (360)
                      .+.+...+++++|.||++||++|+.+.|.|+++++.+++  ++.++.+|++.+ .+ ..++|.++||+++|++|+.+.  
T Consensus       668 ~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--  743 (780)
T 3apo_A          668 NEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKK--  743 (780)
T ss_dssp             HHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTT--
T ss_pred             HHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCccc--
Confidence            887778889999999999999999999999999999987  799999999998 45 468999999999998887753  


Q ss_pred             EecC----CCCHHHHHHHHHHhcCC
Q 018164          319 KVSA----RSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       319 ~~~g----~~~~~~l~~~i~~~~~~  339 (360)
                      ++.|    .++.+.|.+||.+++..
T Consensus       744 ~~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          744 SIWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             EEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             cccCcccCCcCHHHHHHHHHHHHHH
Confidence            4555    68999999999999853

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=100.00  E-value=5.9e-34  Score=246.13  Aligned_cols=222  Identities=23%  Similarity=0.338  Sum_probs=180.0

Q ss_pred             ccCCHHHHHHHhhh-CCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEec----
Q 018164            2 RTNTVNEAEEFLKK-YQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKS----   75 (360)
Q Consensus         2 ~i~s~~~~~~~~~~-~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~----   75 (360)
                      +|+|.+++++|+++ ++++|||||.+.+++..+.|.++| .+++++.|+++++++++++++++    .|+|++||+    
T Consensus        10 ~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~~~~v~~~~~v~----~p~ivlfk~~~~~   85 (250)
T 3ec3_A           10 EILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLKVS----LGKLVLMQPEKFQ   85 (250)
T ss_dssp             ECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEECCHHHHHHHTCC----SSEEEEECCGGGC
T ss_pred             ecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEECcHHHHHHcCCC----CCeEEEEecchhh
Confidence            58899999999999 999999999999999999999999 78899999999999999999996    499999996    


Q ss_pred             --CCCCccccC--CCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec------cchHHHHHHHHHHHH
Q 018164           76 --EPDRYTGYE--ETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA------DDLKSLLEPLEDIAR  145 (360)
Q Consensus        76 --~~~~~~~y~--g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~~~~~la~  145 (360)
                        +++....|+  |+++.++|.+||..+.+|+|+++|.+|+..++. +.+.+++|+...      ..++.+...++++|+
T Consensus        86 ~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk  164 (250)
T 3ec3_A           86 SKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAK  164 (250)
T ss_dssp             CTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHT
T ss_pred             ccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHHHHHHHHHH
Confidence              356677888  578999999999999999999999999988774 667777776532      234668899999999


Q ss_pred             hhcCceEEEEEeCCCcccchhHHhhcCCCCC-CCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHHhcCccCCccccCC
Q 018164          146 NFKGKIMFTAVDIADEDLAKPFLTLFGLEES-KNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRLLHGTLTPYLKSQP  223 (360)
Q Consensus       146 ~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~-~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~~~~~~~se~  223 (360)
                      +|+ +++|+++|+..+.   +.++.||+... .||.+++.+ ..+.+|.+. +.++.++|.+|++++++|+++|+++|||
T Consensus       165 ~~k-ki~F~~~d~~~~~---~~l~~fgl~~~~~~p~~~~~~-~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gkl~p~~kSep  239 (250)
T 3ec3_A          165 DFP-EYTFAIADEEDYA---TEVKDLGLSESGGDVNAAILD-ESGKKFAMEPEEFDSDALREFVMAFKKGKLKPVIKSQP  239 (250)
T ss_dssp             TCT-TSEEEEEETTTTH---HHHHHTTCSSCSCSCEEEEEC-TTSCEEECCCCSCCHHHHHHHHHHHHTTCCCCCC----
T ss_pred             hhc-ceeEEEEcHHHHH---HHHHHcCCCccCCCcEEEEEc-CCCceecCCcccCCHHHHHHHHHHHHCCCccceeecCC
Confidence            999 9999999998775   78899999853 255545555 456789886 6799999999999999999999999999


Q ss_pred             CCCCCCCceE
Q 018164          224 IPDNTNANVQ  233 (360)
Q Consensus       224 ~p~~~~~~v~  233 (360)
                      +|++++++|.
T Consensus       240 iPe~~~~pV~  249 (250)
T 3ec3_A          240 VPKNNKGAAA  249 (250)
T ss_dssp             ----------
T ss_pred             CCCCCCCCCC
Confidence            9998777763

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=241.20  Aligned_cols=222  Identities=20%  Similarity=0.324  Sum_probs=177.9

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEec-----
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKS-----   75 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~-----   75 (360)
                      +|+|.+++++|+++++++|||||.+.+++.++.|.++| .+++++.|+++++++++++++++    .|+|++||+     
T Consensus        10 ~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~~~~v~~~~~~~----~p~i~~fk~~~~~~   85 (252)
T 2h8l_A           10 PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDN----GEGIILFRPSHLTN   85 (252)
T ss_dssp             ECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEECCHHHHHHHCSS----SEEEEEECCGGGCC
T ss_pred             eecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEChHHHHHHhCCC----CCcEEEEcchhhcc
Confidence            57899999999999999999999999999999999999 77899999999999999999996    499999996     


Q ss_pred             -CCCCcccc-CCCCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--c---chHHHHHHHHHHHHhhc
Q 018164           76 -EPDRYTGY-EETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--D---DLKSLLEPLEDIARNFK  148 (360)
Q Consensus        76 -~~~~~~~y-~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~---~~~~~~~~~~~la~~~~  148 (360)
                       +++....| +|+++.++|.+||..+.+|+|.++|.+|+..++..  +.+++|+...  .   ..+.+...++++|++|+
T Consensus        86 kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~  163 (252)
T 2h8l_A           86 KFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFL  163 (252)
T ss_dssp             TTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSSS--SEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcCC--CeEEEEeecchhhcchhHHHHHHHHHHHHHHcc
Confidence             35667789 99999999999999999999999999999887543  4556665433  1   13358889999999999


Q ss_pred             Cc---eEEEEEeCCCcccchhHHhhcCC--CCCCCceEEEEeCCCcccccCCCCCCHHH--HHHHHHHHhcCccCCcccc
Q 018164          149 GK---IMFTAVDIADEDLAKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESDLTPSN--IEEFCSRLLHGTLTPYLKS  221 (360)
Q Consensus       149 ~~---i~f~~vd~~~~~~~~~l~~~~gi--~~~~p~~~~~~~~~~~~~y~~~~~~~~~~--i~~fi~~~~~g~~~~~~~s  221 (360)
                      ++   +.|+++|+..+.   ++++.||+  .....|.+++.+. .+.+|.|.+.++.+.  |.+|++++++|+++|+++|
T Consensus       164 ~k~~~~~F~~~d~~~~~---~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~t~~~~~i~~F~~~~~~Gkl~~~~kS  239 (252)
T 2h8l_A          164 DAGHKLNFAVASRKTFS---HELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKS  239 (252)
T ss_dssp             HTTCCCEEEEEETTTTH---HHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCCCTTSHHHHHHHHHHHHTCSCCCC--
T ss_pred             ccCceEEEEEEchHHHH---HHHHHcCCCCccCCCCEEEEEeC-cCcEecCCcccCcchHHHHHHHHHHHCCCccccccC
Confidence            87   999999999775   78999999  4333344466654 467888888899999  9999999999999999999


Q ss_pred             CCCCCCCCCceE
Q 018164          222 QPIPDNTNANVQ  233 (360)
Q Consensus       222 e~~p~~~~~~v~  233 (360)
                      |++|+++.++|+
T Consensus       240 e~iPe~~~~pV~  251 (252)
T 2h8l_A          240 EPIPESNDGAAA  251 (252)
T ss_dssp             ------------
T ss_pred             CCCCCCCCCCCC
Confidence            999998777775

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=100.00  E-value=1.6e-31  Score=227.66  Aligned_cols=208  Identities=18%  Similarity=0.301  Sum_probs=181.1

Q ss_pred             CccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            1 MRTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         1 ~~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      ++|.|.+++++|+++++++|||||.+.++++.+.|.++|+..+++.|+++.++++|++++++    .|+|++||+.++..
T Consensus        12 ~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~~l~~~~F~~t~~~~v~~~~~v~----~p~i~lfk~~~~~~   87 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNIT----GNTICLFRLVDNEQ   87 (227)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTTTCTTSEEEEECCHHHHHHTTCC----SSEEEEEETTTTEE
T ss_pred             eeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHHhCCCceEEEECCHHHHHHcCCC----CCeEEEEEecCccc
Confidence            46889999999999999999999999999999999999944479999999999999999997    49999999887777


Q ss_pred             cccCC----CCChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCceEEE
Q 018164           81 TGYEE----TFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGKIMFT  154 (360)
Q Consensus        81 ~~y~g----~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~i~f~  154 (360)
                      ..|+|    +++.++|.+||..++.|+|.++|.+|+..++..+.+.++++| .++ .+|+++.+.|+++|++|++++.|+
T Consensus        88 ~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~  167 (227)
T 4f9z_D           88 LNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFI  167 (227)
T ss_dssp             EEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEE
T ss_pred             ccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEE
Confidence            78884    789999999999999999999999999999988888777666 456 789999999999999999999999


Q ss_pred             EEeCCCcccchhHHhhcCCCC-CCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHHhcCc
Q 018164          155 AVDIADEDLAKPFLTLFGLEE-SKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       155 ~vd~~~~~~~~~l~~~~gi~~-~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~  214 (360)
                      ++|++...+ .++++.||+.. ..|.+ ++.+..+..+|.+. +.++.++|.+|++++++|+
T Consensus       168 ~vd~~~~~~-~~~l~~fgl~~~~~P~~-~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          168 LVDSGMKEN-GKVISFFKLKESQLPAL-AIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             EEETTSGGG-HHHHHHTTCCGGGCSEE-EEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             EeCCccHhH-HHHHHHcCCCcccCCEE-EEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            999975322 37889999983 22666 67776666677764 6799999999999999985

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.97  E-value=5.1e-30  Score=220.75  Aligned_cols=219  Identities=22%  Similarity=0.327  Sum_probs=187.2

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc---eEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~---i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+..++.++|......+.+++|.||++| ++|+.+.+.|.+++++++++   +.|+.+|++...   .+++.|||.++ 
T Consensus        15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~-   90 (241)
T 3idv_A           15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS---VLASRFDVSGY-   90 (241)
T ss_dssp             TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHTTCCSS-
T ss_pred             CCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH---HHHHhcCCCcC-
Confidence            45888999999998888889999999999 99999999999999999876   999999999875   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeC
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYT  257 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~  257 (360)
                      |+++++ ..+.  ...+.|..+.+.|.+|+.+.......+          ....+..++.++|++.+ ..+++++|.||+
T Consensus        91 Pt~~~~-~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~v~f~a  156 (241)
T 3idv_A           91 PTIKIL-KKGQ--AVDYEGSRTQEEIVAKVREVSQPDWTP----------PPEVTLVLTKENFDEVV-NDADIILVEFYA  156 (241)
T ss_dssp             SEEEEE-ETTE--EEECCSCSCHHHHHHHHHHHHSTTCCC----------CCCSSEECCTTTHHHHH-HHCSEEEEEEEC
T ss_pred             CEEEEE-cCCC--cccccCcccHHHHHHHHhhccCccccc----------ccccceeccHHHHHHhh-ccCCeEEEEEEC
Confidence            998544 4432  335689999999999999987643211          23457888999999987 567899999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          258 PWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       258 ~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      +||++|+.+.|.|.++++.+++. .++.|+.+|++.+ ++. .++|.++||+++|++|+.   +.|.|.++.+.|.+||.
T Consensus       157 ~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~g~~~~~~l~~~l~  233 (241)
T 3idv_A          157 PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRP---YDYNGPREKYGIVDYMI  233 (241)
T ss_dssp             TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEE---EECCSCCSHHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeE---EEecCCCCHHHHHHHHH
Confidence            99999999999999999999752 3599999999998 554 689999999999998854   46999999999999999


Q ss_pred             HhcCCCC
Q 018164          335 EQLKEKD  341 (360)
Q Consensus       335 ~~~~~~~  341 (360)
                      ++++...
T Consensus       234 ~~~~~~~  240 (241)
T 3idv_A          234 EQSGAAA  240 (241)
T ss_dssp             HHTTCTT
T ss_pred             hhhCCCC
Confidence            9987653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.95  E-value=1.8e-25  Score=202.82  Aligned_cols=302  Identities=15%  Similarity=0.153  Sum_probs=235.5

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC--ccHHH-------HHHHH-hcCC-CceEEEec---cHHHHHHcCCCCCCCCCEE
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG--SDYEE-------FVKTA-AADN-EIQFVETS---NFEVAKVLYPDIKSTDHFL   70 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~--~~~~~-------f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~~~~p~i   70 (360)
                      +.+++++.+.++++++|-|+.++|+  .+...       |.++| .+.+ ++.|+.+.   ++++|+++++.   +.|++
T Consensus        17 ~~~~f~~~i~~~~~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~---~~Pt~   93 (350)
T 1sji_A           17 TEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFD---EEGSL   93 (350)
T ss_dssp             CHHHHHHHHTTCSEEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCC---STTEE
T ss_pred             CHHHHHHHHhhCCeEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCC---ccceE
Confidence            5678889999999999999999996  33334       88988 5544 58888754   67899999998   89999


Q ss_pred             EEEecCCCCccccCCCCChHHHHHHHhhccCCceeecC-ccccccccc-CCCceEEEEEEeccchHHHHHHHHHHHHhhc
Q 018164           71 GIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLT-DINSASVHS-SPIKLQVYVFAKADDLKSLLEPLEDIARNFK  148 (360)
Q Consensus        71 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~  148 (360)
                      .+|+.+.  ...|.|..+.+.|.+|+.....|.+.+++ .+++..+.. .....+|.||.++  |....+.|.++|..++
T Consensus        94 ~~~~~g~--~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~--~~~~~~~~~~~A~~~~  169 (350)
T 1sji_A           94 YVLKGDR--TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSE--ESEYYKAFEEAAEHFQ  169 (350)
T ss_dssp             EEEETTE--EEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT--TSHHHHHHHHHHHHTT
T ss_pred             EEEECCc--EEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCC--CcHHHHHHHHHHHhhc
Confidence            9998643  56899999999999999999999999995 567777766 5556777787765  5556789999999999


Q ss_pred             CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcCccCCccccCCCCCC
Q 018164          149 GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDN  227 (360)
Q Consensus       149 ~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~~~~~~~se~~p~~  227 (360)
                      +.+.|+.+..      ..+++.+|++ + |+++ ++.........|.|. ++.+.|.+|+.+...               
T Consensus       170 ~~~~f~~~~~------~~~~~~~~v~-~-p~i~-~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~---------------  225 (350)
T 1sji_A          170 PYIKFFATFD------KGVAKKLSLK-M-NEVD-FYEPFMDEPIAIPDKPYTEEELVEFVKEHQR---------------  225 (350)
T ss_dssp             TTSEEEEECC------HHHHHHHTCC-T-TCEE-EECTTCSSCEECSSSSCCHHHHHHHHHHHCC---------------
T ss_pred             cCcEEEEECC------HHHHHHcCCC-C-CcEE-EEeCCCCCceecCCCCCCHHHHHHHHHHcCc---------------
Confidence            9999998743      2789999998 5 8885 444433344556787 899999999998542               


Q ss_pred             CCCceEEEcCccccccccccC-ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-C-----CCCCC
Q 018164          228 TNANVQIVVGKTFDDLVLNSH-KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-----PKLQV  300 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~-----~~~~i  300 (360)
                        +.|..++.+++..+..... +..++.|+.+||+.|..+.+.++++|+.+++..++.|+.+|++.+. +     ..+++
T Consensus       226 --p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi  303 (350)
T 1sji_A          226 --PTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKI  303 (350)
T ss_dssp             --CSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCS
T ss_pred             --cchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCC
Confidence              2488899999988653322 4456669999999999999999999999985447999999998772 2     23677


Q ss_pred             C-CCcEEEEEeCCCccCceE--e---cCCCCHHHHHHHHHHhcCCC
Q 018164          301 E-EYPTLLFYPAGDKANPIK--V---SARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       301 ~-~~Pti~~~~~g~~~~~~~--~---~g~~~~~~l~~~i~~~~~~~  340 (360)
                      . ++|+++++...+.. ...  +   .|..+.++|.+||++.+...
T Consensus       304 ~~~~P~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~F~~d~~~Gk  348 (350)
T 1sji_A          304 DLFKPQIGVVNVTDAD-SVWMEIPDDDDLPTAEELEDWIEDVLSGK  348 (350)
T ss_dssp             CTTSCEEEEEESSSSC-EEESCSSCCSCCCCHHHHHHHHHHHHTSC
T ss_pred             CccCCcEEEEeccccc-ccccCCCcccccCCHHHHHHHHHHHhcCc
Confidence            6 58999999763221 122  2   25889999999999987653

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.95  E-value=1.4e-25  Score=204.38  Aligned_cols=309  Identities=12%  Similarity=0.107  Sum_probs=240.3

Q ss_pred             CCHHHHHHHhhhCCeEEEEEecCCCCc--cHH-------HHHHHH-hcCC-CceEEEec---cHHHHHHcCCCCCCCCCE
Q 018164            4 NTVNEAEEFLKKYQTFVLGMFKKFEGS--DYE-------EFVKTA-AADN-EIQFVETS---NFEVAKVLYPDIKSTDHF   69 (360)
Q Consensus         4 ~s~~~~~~~~~~~~~~vv~ff~~~~~~--~~~-------~f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~~~~p~   69 (360)
                      -|.+.++++++++++++|-||.++|+.  ..+       .|+++| .+.+ .+.|+.+.   ++++|+++++.   ++|+
T Consensus        18 lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~---~~PT   94 (367)
T 3us3_A           18 VNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT---EEDS   94 (367)
T ss_dssp             CCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC---STTE
T ss_pred             CCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC---cCce
Confidence            356778889999999999999999976  122       577888 4444 58888754   78899999998   8999


Q ss_pred             EEEEecCCCCccccCCCCChHHHHHHHhhccCCceeecC-ccccccccc-CCCceEEEEEEeccchHHHHHHHHHHHHhh
Q 018164           70 LGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLT-DINSASVHS-SPIKLQVYVFAKADDLKSLLEPLEDIARNF  147 (360)
Q Consensus        70 i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~la~~~  147 (360)
                      +.+|+.+  ....|.|..+.+.|.+||.....|.+..++ .+++..+.. ....++|.||.++  |....+.|.++|..+
T Consensus        95 l~~f~~G--~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~--~~~~~~~f~~~A~~~  170 (367)
T 3us3_A           95 IYVFKED--EVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNK--DSEHYKAFKEAAEEF  170 (367)
T ss_dssp             EEEEETT--EEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT--TCHHHHHHHHHHHHH
T ss_pred             EEEEECC--cEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCC--CchHHHHHHHHHHhh
Confidence            9999964  446899999999999999999999999996 467777776 5566778888765  556777899999999


Q ss_pred             cCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-CCHHHHHHHHHHHhcCccCCccccCCCCC
Q 018164          148 KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPD  226 (360)
Q Consensus       148 ~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g~~~~~~~se~~p~  226 (360)
                      ++.+.|+.+...      .+++.+|++.  |+++ ++.........|.|. ++.+.|.+||....-              
T Consensus       171 ~~~~~F~~~~~~------~~~~~~~v~~--p~i~-lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~--------------  227 (367)
T 3us3_A          171 HPYIPFFATFDS------KVAKKLTLKL--NEID-FYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR--------------  227 (367)
T ss_dssp             TTTSCEEEECCH------HHHHHHTCCT--TCEE-EECTTCSSCEECSSSSCCHHHHHHHHHHTCS--------------
T ss_pred             cCCcEEEEECCH------HHHHHcCCCC--CeEE-EEcCCCCCCeecCCCCCCHHHHHHHHHHcCc--------------
Confidence            999999987532      7889999983  7875 444433445556785 899999999988532              


Q ss_pred             CCCCceEEEcCcccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC------CCC
Q 018164          227 NTNANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP------KLQ  299 (360)
Q Consensus       227 ~~~~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~------~~~  299 (360)
                         ..|..++.+++.+..... .++.++.|+.++|..|..+...++++|+.+++..++.|+++|+..+...      .++
T Consensus       228 ---p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fg  304 (367)
T 3us3_A          228 ---STLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFD  304 (367)
T ss_dssp             ---CSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHT
T ss_pred             ---cceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcC
Confidence               248889999987765432 4567888999999999999999999999998744699999999887421      256


Q ss_pred             CC-CCcEEEEEeCCCc-cCceEecC---CCCHHHHHHHHHHhcCCCCCCCh
Q 018164          300 VE-EYPTLLFYPAGDK-ANPIKVSA---RSSSKNIAAFIKEQLKEKDQSPK  345 (360)
Q Consensus       300 i~-~~Pti~~~~~g~~-~~~~~~~g---~~~~~~l~~~i~~~~~~~~~~~~  345 (360)
                      +. .+|+++++..... .....+.+   ..+.++|.+|+++.+....+...
T Consensus       305 l~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p~~  355 (367)
T 3us3_A          305 IDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTED  355 (367)
T ss_dssp             CCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC--
T ss_pred             CCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCccc
Confidence            65 8999999975543 11223443   68999999999999987665443

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.95  E-value=1.9e-26  Score=210.11  Aligned_cols=209  Identities=16%  Similarity=0.171  Sum_probs=177.6

Q ss_pred             ccCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164            2 RTNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR   79 (360)
Q Consensus         2 ~i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~   79 (360)
                      +++|.+++++|++ ++++++||||.+.+++..+.|.++| .+++++.|+++++++++++++++    .|+|++||++++.
T Consensus       129 ~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~v~----~p~i~lf~~~~~~  204 (367)
T 3us3_A          129 LIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLK----LNEIDFYEAFMEE  204 (367)
T ss_dssp             ECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHTCC----TTCEEEECTTCSS
T ss_pred             EcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEECCHHHHHHcCCC----CCeEEEEcCCCCC
Confidence            4778999999999 7899999999998999999999999 78899999999999999999996    5999999998778


Q ss_pred             ccccCCC-CChHHHHHHHhhccCCceeecCcccccccccCC--CceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEE
Q 018164           80 YTGYEET-FIMDKILQFLNYNKFPLVTKLTDINSASVHSSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMF  153 (360)
Q Consensus        80 ~~~y~g~-~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f  153 (360)
                      ...|+|. ++.++|.+||..+..|+|.++|.+++..++..+  .+.+++|+..+ ..+.++...++++|++|++  ++.|
T Consensus       205 ~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F  284 (367)
T 3us3_A          205 PVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSI  284 (367)
T ss_dssp             CEECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred             CeecCCCCCCHHHHHHHHHHcCccceeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEE
Confidence            8899985 899999999999999999999999987776542  34556666555 6688999999999999998  7999


Q ss_pred             EEEeCCCcccchhHH----hhcCCCCCCCceEEEEeCCCc--ccccCCC---CCCHHHHHHHHHHHhcCccCCc
Q 018164          154 TAVDIADEDLAKPFL----TLFGLEESKNTVVTAFDNKAI--SKFLLES---DLTPSNIEEFCSRLLHGTLTPY  218 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~----~~~gi~~~~p~~~~~~~~~~~--~~y~~~~---~~~~~~i~~fi~~~~~g~~~~~  218 (360)
                      +++|+..++   ..+    +.||+....|.+ ++.+...+  .+|.+.+   .+|.++|.+|++++++|+++|.
T Consensus       285 ~~id~~~~~---~~l~~~~~~fgl~~~~P~~-~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~p~  354 (367)
T 3us3_A          285 IWIDPDDFP---LLVPYWEKTFDIDLSAPQI-GVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTE  354 (367)
T ss_dssp             EEECGGGCT---TTHHHHHHHHTCCTTSCEE-EEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSCC-
T ss_pred             EEECCccch---hHHHHHHHhcCCCCCCCeE-EEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcCcc
Confidence            999999875   444    459998433666 56666544  4676754   6999999999999999999886

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=211.13  Aligned_cols=240  Identities=18%  Similarity=0.240  Sum_probs=167.9

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCC--C
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEP--D   78 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~--~   78 (360)
                      ++.+.+++++ +..+++++|+||.+.++...+.|.++| .+++++.|+++.+ +++++++++   +.|  ++|++.+  .
T Consensus       122 ~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~~~-~~~~~~~v~---~~p--i~~~~~~~~~  194 (382)
T 2r2j_A          122 EIRDLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFG-DVSKPERYS---GDN--IIYKPPGHSA  194 (382)
T ss_dssp             EC-------------CCEEEEEESCSSSHHHHHHHHHHHHHTTTCEEEEEES-CC-----------CE--EEEECSSSSS
T ss_pred             ecCCHHHHHH-hcCCCCEEEEEECCCCChhHHHHHHHHHHhhccceEEEEeh-hhHHhhCCC---CCc--eEECCCCCCC
Confidence            3567778887 677889999999988888899999999 7789999999988 788888886   667  5677652  3


Q ss_pred             CccccCCCC-ChHHHHHHHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEE
Q 018164           79 RYTGYEETF-IMDKILQFLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTA  155 (360)
Q Consensus        79 ~~~~y~g~~-~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~  155 (360)
                      ....|+|.+ +.++|.+||..+..|+|.++|.+++..++..+.+++++|+.++  ..++.+...+.+++.++++++.|++
T Consensus       195 ~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~  274 (382)
T 2r2j_A          195 PDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLH  274 (382)
T ss_dssp             CCEECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEE
T ss_pred             cCcccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEE
Confidence            457899998 8999999999999999999999999999888888888888776  4466677778888889999999999


Q ss_pred             EeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC---CCCCHHHHHHHHHHHhcCccCCccccCCCCCCC----
Q 018164          156 VDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE---SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT----  228 (360)
Q Consensus       156 vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~---~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~----  228 (360)
                      +|+..+.   .+++.||++....|++++.+.+..  |.|.   +..+.++|.+|++++++|+++|+++|+++|++.    
T Consensus       275 id~~~~~---~~~~~~gl~~~~~P~i~i~~~~~~--y~~~~~~~~~~~~~i~~F~~d~~~Gkl~p~~kse~~P~~~~~~~  349 (382)
T 2r2j_A          275 ADCDKFR---HPLLHIQKTPADCPVIAIDSFRHM--YVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGE  349 (382)
T ss_dssp             EETTTTH---HHHHHTTCCGGGCSEEEEECSSCE--EECCCSGGGGSTTHHHHHHHHHHHTTTSSCC-------------
T ss_pred             EchHHhH---HHHHHcCCCccCCCEEEEEcchhc--CCCCccccccCHHHHHHHHHHHHCCCccccccCCCCCCCCCccc
Confidence            9999875   789999998533344466654332  5442   345789999999999999999999999999876    


Q ss_pred             --CCceEEEcCccccccccccCccEEE
Q 018164          229 --NANVQIVVGKTFDDLVLNSHKDVLL  253 (360)
Q Consensus       229 --~~~v~~l~~~~~~~~~~~~~~~~~v  253 (360)
                        ...+.....++|.++.-...+.+++
T Consensus       350 ~~~~~~~~~~~s~f~~l~~~~~~~~~~  376 (382)
T 2r2j_A          350 QAQDVASSPPESSFQKLAPSEYRYTLL  376 (382)
T ss_dssp             ------CCCCCCSGGGGSCCTTTCEEC
T ss_pred             ccccCCCCCCcccccccCCCccceecc
Confidence              2233556778888876445556654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.94  E-value=3.9e-25  Score=200.60  Aligned_cols=207  Identities=18%  Similarity=0.245  Sum_probs=174.8

Q ss_pred             ccCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 018164            2 RTNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDR   79 (360)
Q Consensus         2 ~i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~   79 (360)
                      +++|.+++++|++ ++++++|+||++.++...+.|.++| .+++++.|+.+.++++|++++++    .|++++|++.++.
T Consensus       127 ~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~~~~~~~~~~~v~----~p~i~~~~~~~~~  202 (350)
T 1sji_A          127 IINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLK----MNEVDFYEPFMDE  202 (350)
T ss_dssp             ECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEECCHHHHHHHTCC----TTCEEEECTTCSS
T ss_pred             eccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHHHhhccCcEEEEECCHHHHHHcCCC----CCcEEEEeCCCCC
Confidence            4678999999998 8889999999998888999999999 67799999999999999999986    7999999998777


Q ss_pred             ccccCCC-CChHHHHHHHhhccCCceeecCcccccccccCCC-ceE-EEEEEec-cchHHHHHHHHHHHHhhcC--ceEE
Q 018164           80 YTGYEET-FIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI-KLQ-VYVFAKA-DDLKSLLEPLEDIARNFKG--KIMF  153 (360)
Q Consensus        80 ~~~y~g~-~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~-~~~-v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f  153 (360)
                      ...|+|. ++.++|.+||..+..|+|.++|.+++..+++.+. +.. ++|+.++ .+|.++.+.|+++|+++++  ++.|
T Consensus       203 ~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f  282 (350)
T 1sji_A          203 PIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSI  282 (350)
T ss_dssp             CEECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCE
T ss_pred             ceecCCCCCCHHHHHHHHHHcCccchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEE
Confidence            8899997 8999999999999999999999999999887654 433 4444444 5578999999999999987  8999


Q ss_pred             EEEeCCCcccchhHH----hhcCCCCCCCceEEEEeCCCccccc--CC---CCCCHHHHHHHHHHHhcCccC
Q 018164          154 TAVDIADEDLAKPFL----TLFGLEESKNTVVTAFDNKAISKFL--LE---SDLTPSNIEEFCSRLLHGTLT  216 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~----~~~gi~~~~p~~~~~~~~~~~~~y~--~~---~~~~~~~i~~fi~~~~~g~~~  216 (360)
                      +++|+..++   .++    +.||+....|.+ ++++...+.+|.  +.   +.++.++|.+|++++++|++.
T Consensus       283 ~~id~~~~~---~~~~~~~~~~gi~~~~P~~-~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl~  350 (350)
T 1sji_A          283 VWIDPDDFP---LLVAYWEKTFKIDLFKPQI-GVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKIN  350 (350)
T ss_dssp             EEECGGGCH---HHHHHHHHHCCSCTTSCEE-EEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC-
T ss_pred             EEECchhhH---HHHHHHHhhcCCCccCCcE-EEEecccccccccCCCcccccCCHHHHHHHHHHHhcCccC
Confidence            999999775   677    789998432666 566665454554  43   478999999999999999863

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.93  E-value=5.2e-26  Score=193.73  Aligned_cols=193  Identities=13%  Similarity=0.175  Sum_probs=154.9

Q ss_pred             ceEEEEEEe-c-cchHHHHHHHHHHHHhhcCceEEEEEeCCC--cccchhHHhhcCCCCCCCceEEEEeCCCcccccCCC
Q 018164          121 KLQVYVFAK-A-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD--EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES  196 (360)
Q Consensus       121 ~~~v~f~~~-~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~--~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~  196 (360)
                      ..+++|+++ | ++|+.+.+.|.++|+. .+++.|+.+|++.  ..   .+++.|||.++ |+++ ++..+......+.|
T Consensus        24 v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~---~~~~~~~v~~~-Pt~~-~~~~g~~~~~~~~G   97 (226)
T 1a8l_A           24 VKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGK---ELAKRYRIDRA-PATT-ITQDGKDFGVRYFG   97 (226)
T ss_dssp             EEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHH---HHHHHTTCCSS-SEEE-EEETTBCCSEEEES
T ss_pred             eEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccH---HHHHHcCCCcC-ceEE-EEcCCceeeEEEec
Confidence            345788999 9 9999999999999965 5679999999997  64   89999999998 9985 44443322234467


Q ss_pred             CCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccE-EEEEeCCCChhhHHHHHHHHHHHH
Q 018164          197 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSKQIEKLAK  275 (360)
Q Consensus       197 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~la~  275 (360)
                      ..+.+.+..|+...+...-               .+..++.++++.+. ..++++ +|.||++||++|+.+.|.|++++.
T Consensus        98 ~~~~~~l~~~l~~~l~~~~---------------~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~  161 (226)
T 1a8l_A           98 LPAGHEFAAFLEDIVDVSR---------------EETNLMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAI  161 (226)
T ss_dssp             CCCTTHHHHHHHHHHHHHH---------------TCCCCCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhhcC---------------CCCCCCHHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHHHHHH
Confidence            7888899999998764211               12345667777764 455666 999999999999999999999999


Q ss_pred             Hhc--CCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          276 HFK--GLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       276 ~~~--~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      .+.  +..++.++.+|++.+ ++ ..++|.++||+++|++|+..  .++.|.++.+.|.+||++.+
T Consensus       162 ~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          162 ENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDR--VEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEE--EEEESCCCHHHHHHHHHHHH
T ss_pred             hcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCcee--EEEcCCCCHHHHHHHHHHhh
Confidence            987  112799999999988 44 46899999999999988663  58999999999999999875

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.92  E-value=6.9e-25  Score=187.13  Aligned_cols=191  Identities=13%  Similarity=0.138  Sum_probs=154.8

Q ss_pred             CCCceEEEEE-----Eec-cchHHHHHHHHHHHHhh--cCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCc
Q 018164          118 SPIKLQVYVF-----AKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI  189 (360)
Q Consensus       118 ~~~~~~v~f~-----~~~-~~~~~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~  189 (360)
                      ...++++.+|     ++| ++|+.+.+.|.++|.++  .+++.|+.+||+...   .+|+.|||+++ |+++ ++.+ +.
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Ptl~-~~~~-~~   92 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK---EETEKYGVDRV-PTIV-IEGD-KD   92 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCH---HHHHHTTCCBS-SEEE-EESS-SC
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccH---HHHHHcCCCcC-cEEE-EECC-Cc
Confidence            3455666666     788 99999999999999998  678999999999875   99999999999 9995 5543 23


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccE-EEEEeCCCChhhHHHHH
Q 018164          190 SKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSK  268 (360)
Q Consensus       190 ~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~~  268 (360)
                      ....|.|..+.+.+..|+...+...               +.+..++.++|+.++ ..++++ +|.||++||++|+.+.|
T Consensus        93 ~~~~~~G~~~~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~~  156 (229)
T 2ywm_A           93 YGIRYIGLPAGLEFTTLINGIFHVS---------------QRKPQLSEKTLELLQ-VVDIPIEIWVFVTTSCGYCPSAAV  156 (229)
T ss_dssp             CCEEEESCCCTTHHHHHHHHHHHHH---------------TTCCSCCHHHHHHHT-TCCSCEEEEEEECTTCTTHHHHHH
T ss_pred             ccceecCCccHHHHHHHHHHHHhcc---------------CCccCCCHHHHHHHH-hcCCCeEEEEEECCCCcchHHHHH
Confidence            3444578889999999999876411               123456677888876 445555 88899999999999999


Q ss_pred             HHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          269 QIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       269 ~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .+++++..+ +  ++.++.+|++.+ ++ ..++|.++||+++  +|+   ..+|.|.++.+.|.+||++.++
T Consensus       157 ~~~~~~~~~-~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~---~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          157 MAWDFALAN-D--YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG---VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHHC-T--TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG---TEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-C--CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE---EEEeeCCCCHHHHHHHHHHHhh
Confidence            999999998 3  799999999988 55 4789999999998  554   3579999999999999998875

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.6e-22  Score=185.40  Aligned_cols=299  Identities=9%  Similarity=0.055  Sum_probs=213.3

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hc------CCCceEEEec---cHHHHHHcCCCCCCCCCEEE
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AA------DNEIQFVETS---NFEVAKVLYPDIKSTDHFLG   71 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~------~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~   71 (360)
                      +.++++++++++++++|.|+.++|+   .+...|.++| .+      .+.+.|+.+.   +.++|+++++.   +.|+++
T Consensus        11 ~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~---~~Pt~~   87 (382)
T 2r2j_A           11 DTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRIS---KYPTLK   87 (382)
T ss_dssp             CTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCC---EESEEE
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCC---cCCEEE
Confidence            4567778888999999999999996   5678899999 54      3458888754   67899999998   899999


Q ss_pred             EEecCCCCccccCCCCChHHHHHHHhhccCCceeecCc-ccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCc
Q 018164           72 IVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTD-INSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGK  150 (360)
Q Consensus        72 ~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~-~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~  150 (360)
                      +|+.+......|.|..+.+.|.+||.....|.+..++. +++.. +.....+++.||.++  +......|.++|..+++.
T Consensus        88 ~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~--~~~~~~~f~~~A~~~~~~  164 (382)
T 2r2j_A           88 LFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQK--DSDNYRVFERVANILHDD  164 (382)
T ss_dssp             EEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCS--SSHHHHHHHHHHHHHTTT
T ss_pred             EEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCC--CChhHHHHHHHHHHhhcc
Confidence            99964322226899999999999999999998888854 45666 455666778888665  223456899999999999


Q ss_pred             eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC-CcccccCCCCC-CHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          151 IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK-AISKFLLESDL-TPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       151 i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~-~~~~y~~~~~~-~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                      +.|+...+.       +++.++++++ | + ++...+ ......|.|.+ +.+.|.+||+...-                
T Consensus       165 ~~F~~~~~~-------~~~~~~v~~~-p-i-~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~----------------  218 (382)
T 2r2j_A          165 CAFLSAFGD-------VSKPERYSGD-N-I-IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV----------------  218 (382)
T ss_dssp             CEEEEEESC-------C--------C-E-E-EEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS----------------
T ss_pred             ceEEEEehh-------hHHhhCCCCC-c-e-EECCCCCCCcCcccCCCCCCHHHHHHHHHhccc----------------
Confidence            999887762       3466788876 6 4 566542 23445668888 99999999998652                


Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--CCCCCCC--CC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPKLQVE--EY  303 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~~~~~i~--~~  303 (360)
                       ..|..++..++.++ ...+.++++.|+.++|. .|..+...+.+++..+++  ++.|+.+|++.+.  +..++++  .+
T Consensus       219 -p~v~elt~~~~~~~-~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~--~i~f~~id~~~~~~~~~~~gl~~~~~  294 (382)
T 2r2j_A          219 -PLVREITFENGEEL-TEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKG--TINFLHADCDKFRHPLLHIQKTPADC  294 (382)
T ss_dssp             -CSSEECCHHHHHHH-HTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT--TSEEEEEETTTTHHHHHHTTCCGGGC
T ss_pred             -CceEecChhhHHHH-hcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC--eeEEEEEchHHhHHHHHHcCCCccCC
Confidence             24778888888876 46678999999999984 455566667777767765  8999999999872  2356665  78


Q ss_pred             cEEEEEeCCCccCceEe---cCCCCHHHHHHHHHHhcCCCCC
Q 018164          304 PTLLFYPAGDKANPIKV---SARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~---~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      |.++++..+..   ..|   .+..+.+.|.+||++.+.....
T Consensus       295 P~i~i~~~~~~---y~~~~~~~~~~~~~i~~F~~d~~~Gkl~  333 (382)
T 2r2j_A          295 PVIAIDSFRHM---YVFGDFKDVLIPGKLKQFVFDLHSGKLH  333 (382)
T ss_dssp             SEEEEECSSCE---EECCCSGGGGSTTHHHHHHHHHHHTTTS
T ss_pred             CEEEEEcchhc---CCCCccccccCHHHHHHHHHHHHCCCcc
Confidence            99999865432   233   3455789999999998876543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.90  E-value=8.2e-23  Score=175.23  Aligned_cols=193  Identities=13%  Similarity=0.128  Sum_probs=149.0

Q ss_pred             CCceEEEEEEec---cchHHHHHHHHHHHHh---hcCc--eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc
Q 018164          119 PIKLQVYVFAKA---DDLKSLLEPLEDIARN---FKGK--IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS  190 (360)
Q Consensus       119 ~~~~~v~f~~~~---~~~~~~~~~~~~la~~---~~~~--i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~  190 (360)
                      ..+..+.||.+|   ++|+.+.+.+.++|+.   ++++  +.|+.+|++...   .+++.|||+++ |+++ +++ + ..
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~---~~~~~~gv~~~-Pt~~-i~~-g-~~   97 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS---DKFSEFKVERV-PTVA-FLG-G-EV   97 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH---HHHHHTTCCSS-SEEE-ETT-T-TE
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH---HHHHhcCCCcC-CEEE-EEC-C-ce
Confidence            357788888888   7799999999999998   4555  999999999775   89999999988 9984 553 3 34


Q ss_pred             cccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHH
Q 018164          191 KFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI  270 (360)
Q Consensus       191 ~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~  270 (360)
                      +|  .|..+...+..|+..++.+.-.+.               .++.++++.+.....+.+++.||+|||++|+.+.|.|
T Consensus        98 ~~--~G~~~~~~l~~fv~~~l~~~~~~~---------------~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l  160 (243)
T 2hls_A           98 RW--TGIPAGEEIRALVEVIMRLSEDES---------------GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLA  160 (243)
T ss_dssp             EE--ESCCCTTHHHHHHHHHHHHHTTCC---------------CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHH
T ss_pred             eE--cCCCcHHHHHHHHHHHHhccCCCC---------------CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHH
Confidence            44  576777899999998874321111               1222333333222355678999999999999999999


Q ss_pred             HHHHHHhc--CCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          271 EKLAKHFK--GLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       271 ~~la~~~~--~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ++++..+.  +..++.++.+|++.+ ++ ..++|.++||+++  +|..    .|.|.++.+.|.++|.+.++...
T Consensus       161 ~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~----~~~G~~~~~~l~~~l~~~~~~~~  229 (243)
T 2hls_A          161 HMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYL----VFVGVPYEEDFLDYVKSAAEGRL  229 (243)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE----EEESCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEE----EEeCCCCHHHHHHHHHHHhhccc
Confidence            99999983  223799999999998 55 4689999999988  5532    59999999999999999987643

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.87  E-value=2.1e-20  Score=176.82  Aligned_cols=300  Identities=14%  Similarity=0.148  Sum_probs=227.7

Q ss_pred             CHHHHHHHhhhC---CeEEEEEecCCCC---ccHHHHHHHH-hcCCCceEEEec---cHHHHHHcCCCCCCCCCEEEEEe
Q 018164            5 TVNEAEEFLKKY---QTFVLGMFKKFEG---SDYEEFVKTA-AADNEIQFVETS---NFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         5 s~~~~~~~~~~~---~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      |.+++++++.++   ++++|.|+.++|+   .+...|.++| .+.+.+.|+.+.   ++++|+++++.   +.|++++|+
T Consensus         7 ~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Ptl~~~~   83 (481)
T 3f8u_A            7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVS---GYPTLKIFR   83 (481)
T ss_dssp             CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCC---EESEEEEEE
T ss_pred             cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCC---CCCEEEEEe
Confidence            567788888887   9999999999986   6788999999 555668888865   78899999998   899999998


Q ss_pred             cCCCCccccCCCCChHHHHHHHhhccCCceeec-CcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164           75 SEPDRYTGYEETFIMDKILQFLNYNKFPLVTKL-TDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMF  153 (360)
Q Consensus        75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l-~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f  153 (360)
                      .+ .....|.|..+.+.|.+|+.....|.+..+ +.+++..+.......++.||.++  +......|.++|..+++.+.|
T Consensus        84 ~g-~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~--~~~~~~~f~~~a~~~~~~~~F  160 (481)
T 3f8u_A           84 DG-EEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDS--FSEAHSEFLKAASNLRDNYRF  160 (481)
T ss_dssp             TT-EEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCT--TCHHHHHHHHHHHHHTTTSCE
T ss_pred             CC-ceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCC--ccchHHHHHHHHHHhccCceE
Confidence            64 345689999999999999999999998888 55667777777767777788655  445677899999999999999


Q ss_pred             EEEeCCCcccchhHHhhcCCCCCCCceEEEEe-----CCCcccccCC-CCCCHHHHHHHHHHHhcCccCCccccCCCCCC
Q 018164          154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-----NKAISKFLLE-SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDN  227 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~-----~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~  227 (360)
                      +.+..      ..+++.+|++..  +++++.+     ........|. |..+.+.|.+||....-               
T Consensus       161 ~~~~~------~~~~~~~~v~~~--~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~---------------  217 (481)
T 3f8u_A          161 AHTNV------ESLVNEYDDNGE--GIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF---------------  217 (481)
T ss_dssp             EEECC------HHHHHHHCSSSE--EEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTT---------------
T ss_pred             EEECC------HHHHHHhCCCCC--cEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCC---------------
Confidence            98742      278899999764  4544431     1123445566 77899999999998643               


Q ss_pred             CCCceEEEcCccccccccccCccEEEEEeCCC-Ch---hhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-C-CCCCCC
Q 018164          228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPW-CV---TCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-E-HPKLQV  300 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~-c~---~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~-~~~~~i  300 (360)
                        ..|..++..++..+.   +.+.++.|+... ..   .+..+...+.++|+.+++. .++.|+.+|+... . +..+++
T Consensus       218 --p~v~e~t~~n~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl  292 (481)
T 3f8u_A          218 --GICPHMTEDNKDLIQ---GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGL  292 (481)
T ss_dssp             --TTSCEECTTTHHHHT---TSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTC
T ss_pred             --CCccccChhHHHHhc---CCCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCC
Confidence              236678888888765   456666666432 22   2233677899999999872 2399999998876 2 345666


Q ss_pred             C----CCcEEEEEeCCCccCceEecCCCCHH--HHHHHHHHhcCCC
Q 018164          301 E----EYPTLLFYPAGDKANPIKVSARSSSK--NIAAFIKEQLKEK  340 (360)
Q Consensus       301 ~----~~Pti~~~~~g~~~~~~~~~g~~~~~--~l~~~i~~~~~~~  340 (360)
                      +    ..|.++++..+..  .+.+.+..+.+  .|.+|+.+.+...
T Consensus       293 ~~~~~~~P~~~i~~~~~~--ky~~~~~~t~e~~~l~~f~~~~~~g~  336 (481)
T 3f8u_A          293 ESTAGEIPVVAIRTAKGE--KFVMQEEFSRDGKALERFLQDYFDGN  336 (481)
T ss_dssp             CCCTTCSCEEEEECSSSC--EEECCSCCCTTSHHHHHHHHHHHHTC
T ss_pred             CcccCCCcEEEEEcCCCc--ccCCCcccCccHHHHHHHHHHHhcCC
Confidence            5    6899999964333  34666888999  9999999987654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.85  E-value=3.2e-21  Score=148.67  Aligned_cols=109  Identities=23%  Similarity=0.424  Sum_probs=97.4

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC---CCCEEEEEEeCCCC-CCC-CCCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG---LDNLVIAKIDASAN-EHP-KLQVEEY  303 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~-~~~-~~~i~~~  303 (360)
                      .+.|..|++++|++.+.+++++++|.||++||++|+.+.|.|+++|+.+..   ..++.++.+|++.+ ++. +++|.++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            467899999999999877789999999999999999999999999998742   23799999999998 654 7899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ||+++|++|+...++.|.|.++.+.|.+||.++.
T Consensus        94 Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~s  127 (127)
T 3h79_A           94 PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQNT  127 (127)
T ss_dssp             SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred             CEEEEEeCCCCCCceEecCCccHHHHHHHHHhcC
Confidence            9999999998866789999999999999999863

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.84  E-value=4e-20  Score=141.15  Aligned_cols=115  Identities=37%  Similarity=0.748  Sum_probs=100.4

Q ss_pred             CCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC---CCCEEEEEEeCCCCCCCCCCCC
Q 018164          225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG---LDNLVIAKIDASANEHPKLQVE  301 (360)
Q Consensus       225 p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~~~~~~~i~  301 (360)
                      |+...+.|..+++++|++.+..++++++|+||++||++|+.+.|.|+++++.+.+   ..++.|+.+|++.+.+.. ++.
T Consensus         2 p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~   80 (121)
T 2djj_A            2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQ   80 (121)
T ss_dssp             CCCCSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCS
T ss_pred             CccCCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccC
Confidence            3345677999999999998877889999999999999999999999999999975   237999999999998777 999


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++||+++|++|++....+|.|.++.+.|.+||.+++...
T Consensus        81 ~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           81 GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             SSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             cCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCcC
Confidence            999999999886633468999999999999999987643

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.84  E-value=1.7e-20  Score=145.66  Aligned_cols=125  Identities=22%  Similarity=0.326  Sum_probs=110.9

Q ss_pred             ccCCceeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC--C
Q 018164           99 NKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE--S  176 (360)
Q Consensus        99 ~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~--~  176 (360)
                      .+.|+|.++|.++|..+++.+.+.++.||+++++|+.+.+.++++|++|++++.|+++|.+.++   .+++.|||++  .
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~---~~a~~~gi~~~~i   79 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLNLKTDKF   79 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTTCCSSSS
T ss_pred             cccCceeccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhH---HHHHHcCCCcccC
Confidence            5789999999999998888888888999988899999999999999999999999999999876   8999999998  5


Q ss_pred             CCceEEEEeCCCcccccCC--CCCCHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          177 KNTVVTAFDNKAISKFLLE--SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~--~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                       |+++ ++...++.+|.+.  |..+.+.|.+|++++++|+++|+++||++|+++
T Consensus        80 -Ptl~-i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~~  131 (133)
T 2djk_A           80 -PAFA-IQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ  131 (133)
T ss_dssp             -SEEE-EECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTS
T ss_pred             -CEEE-EEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcCccccCCCCCCcC
Confidence             8884 5554345567775  889999999999999999999999999999864

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=145.47  Aligned_cols=133  Identities=30%  Similarity=0.566  Sum_probs=105.2

Q ss_pred             HHhhccCCceeecCcccccccccCCCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcC
Q 018164           95 FLNYNKFPLVTKLTDINSASVHSSPIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFG  172 (360)
Q Consensus        95 fi~~~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~g  172 (360)
                      -++.+++|+|+++|.+|...++..+.+.++++|...  ...+.+.+.++++|++|++++.|+++|.+...+ .++++.||
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~-~~~l~~fG   85 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDN-QRILEFFG   85 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGG-HHHHHHTT
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhH-HHHHHHcC
Confidence            457899999999999999999999988887767653  557889999999999999999999999843222 36889999


Q ss_pred             CCCCCCceEEEEeC-CCcccccCC-CCCCHHHHHHHHHHHhcCccCCccccCCCCCCC
Q 018164          173 LEESKNTVVTAFDN-KAISKFLLE-SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNT  228 (360)
Q Consensus       173 i~~~~p~~~~~~~~-~~~~~y~~~-~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~  228 (360)
                      ++....|++++.+. ..+.+|.+. +.++.++|.+|++++++|+++|+++|||+|++|
T Consensus        86 l~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~w  143 (147)
T 3bj5_A           86 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW  143 (147)
T ss_dssp             CCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEEECCSCCCGGG
T ss_pred             CCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCccccccCCCCCCCc
Confidence            99644444467765 557788875 789999999999999999999999999999874

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.83  E-value=2.6e-19  Score=153.68  Aligned_cols=196  Identities=17%  Similarity=0.179  Sum_probs=164.0

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCCC---ceEEEe---ccHHHHHHcCCCCCCCCCEEEEEe
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADNE---IQFVET---SNFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~---~~F~~~---~~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      +.++++.++.++++++|.|+.++|+   .+...|.++| .+.+.   +.|+.+   .+.++|+++++.   +.|++++|+
T Consensus        21 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~   97 (241)
T 3idv_A           21 NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVS---GYPTIKILK   97 (241)
T ss_dssp             CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCC---SSSEEEEEE
T ss_pred             cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCC---cCCEEEEEc
Confidence            5567888899999999999999986   5677888888 44333   788764   467899999998   899999998


Q ss_pred             cCCCCccccCCCCChHHHHHHHhhccCC-------ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHh
Q 018164           75 SEPDRYTGYEETFIMDKILQFLNYNKFP-------LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARN  146 (360)
Q Consensus        75 ~~~~~~~~y~g~~~~~~l~~fi~~~~~p-------~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~  146 (360)
                      .+  ....|.|..+.++|.+|+.....|       .+..++.+++......+.++++.||++| ++|+.+.+.|.++|.+
T Consensus        98 ~g--~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~  175 (241)
T 3idv_A           98 KG--QAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKE  175 (241)
T ss_dssp             TT--EEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHH
T ss_pred             CC--CcccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHH
Confidence            53  345789999999999999986554       4778899999988877788999999999 9999999999999999


Q ss_pred             hcCc---eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          147 FKGK---IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       147 ~~~~---i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +.++   +.|+.+|++...   .+++.|||.++ |++++ +..+  ..+.+.|..+.+.|.+|+.+.+.
T Consensus       176 ~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~-~~~g--~~~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          176 LSKRSPPIPLAKVDATAET---DLAKRFDVSGY-PTLKI-FRKG--RPYDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             HHTSSSCCCEEEEETTTCH---HHHHHTTCCSS-SEEEE-EETT--EEEECCSCCSHHHHHHHHHHHTT
T ss_pred             HhccCCcEEEEEEECCCCH---HHHHHcCCccc-CEEEE-EECC--eEEEecCCCCHHHHHHHHHhhhC
Confidence            9765   999999999875   89999999999 99854 4443  33446899999999999999764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.81  E-value=9.1e-19  Score=166.49  Aligned_cols=292  Identities=17%  Similarity=0.171  Sum_probs=220.6

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHH-hcCC-CceEEEec---cHHHHHHcCCCCCCCCCEEEEEecC
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTA-AADN-EIQFVETS---NFEVAKVLYPDIKSTDHFLGIVKSE   76 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~-~~~F~~~~---~~~~~~~~~~~~~~~~p~i~~~~~~   76 (360)
                      +.++++++++++++++|.|+.++|+   .+...|.++| .+.+ ++.|+.+.   +.++|+++++.   +.|++++|+.+
T Consensus        20 ~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~~g   96 (504)
T 2b5e_A           20 ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP---GFPSLKIFKNS   96 (504)
T ss_dssp             CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCC---SSSEEEEEETT
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCC---cCCEEEEEeCC
Confidence            5567888899999999999999996   5788999999 5555 48998864   78899999998   89999999975


Q ss_pred             CCC-ccccCCCCChHHHHHHHhhccCCceeecCcccccccccCCC--ceEEEEEEeccchHHHHHHHHHHHHhhcCceEE
Q 018164           77 PDR-YTGYEETFIMDKILQFLNYNKFPLVTKLTDINSASVHSSPI--KLQVYVFAKADDLKSLLEPLEDIARNFKGKIMF  153 (360)
Q Consensus        77 ~~~-~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~--~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f  153 (360)
                      ... ...|.|..+.+.|.+|+.....|.+..++.  ++.+.....  ..++.||.+.  .......|..+|..+++.+.|
T Consensus        97 ~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~--~~~~~~~~~~~~~~v~~f~~~--~~~~~~~f~~~A~~~~~~~~F  172 (504)
T 2b5e_A           97 DVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVAD--LPAYLANETFVTPVIVQSGKI--DADFNATFYSMANKHFNDYDF  172 (504)
T ss_dssp             CTTCEEECCSCCSHHHHHHHHHHHTSCSEEECSC--HHHHHHHSCCSSCEEEEEESC--CHHHHHHHHHHHHHTTTTCEE
T ss_pred             ccccceeecCCCCHHHHHHHHHHhcCCcceeHHH--HHHHHhcCCCceEEEEEeCCC--CchHHHHHHHHHHHhhcCcEE
Confidence            421 668999999999999999999999999987  666665555  5677777764  234556899999999999999


Q ss_pred             EEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC-C---CHHHHHHHHHHHhcCccCCccccCCCCCCCC
Q 018164          154 TAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-L---TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN  229 (360)
Q Consensus       154 ~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~-~---~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~  229 (360)
                      +.++ .       +++.+|++     + +++.... ....|.|. .   +.+.|.+||.....+                
T Consensus       173 ~~~~-~-------~~~~~~~~-----i-~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p----------------  221 (504)
T 2b5e_A          173 VSAE-N-------ADDDFKLS-----I-YLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALP----------------  221 (504)
T ss_dssp             EEEE-C-------TTSCCEEE-----E-EETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSC----------------
T ss_pred             EEEH-H-------HHHhcCCe-----E-EecCCCC-cccccCCcccccCCHHHHHHHHHhcccC----------------
Confidence            9887 1       34556664     3 3332212 44456787 6   999999999886431                


Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCC-CCCcEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQV-EEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i-~~~Pti  306 (360)
                       .+..++..++..+. ..+.+++++|+.+.... ..+...++++|+.+++  ++.|+.+|++.+ .+ ..+++ ..+|++
T Consensus       222 -~v~~~t~~~~~~~~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~a~~~~~--~i~F~~id~~~~~~~~~~~gl~~~~P~v  296 (504)
T 2b5e_A          222 -YFGEIDGSVFAQYV-ESGLPLGYLFYNDEEEL-EEYKPLFTELAKKNRG--LMNFVSIDARKFGRHAGNLNMKEQFPLF  296 (504)
T ss_dssp             -SSCBCCHHHHHHHH-HTTSCEEEEEESSHHHH-HHHHHHHHHHHHHTTT--TCEEEEEEHHHHTTHHHHTTCCSCSSEE
T ss_pred             -CcccCCHhHHHHHh-cCCCcEEEEEecCcccH-HHHHHHHHHHHHhcCC--eeEEEEEehhhhHHHHHHcCCcccCCEE
Confidence             35567777887764 66778888887654333 6788999999999987  799999998876 33 24566 469999


Q ss_pred             EEEeCCCccCceEec--CC-----------CCHHHHHHHHHHhcCCC
Q 018164          307 LFYPAGDKANPIKVS--AR-----------SSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~--g~-----------~~~~~l~~~i~~~~~~~  340 (360)
                      +++...... .+.+.  +.           .+.+.|..|+.+.+..+
T Consensus       297 ~i~~~~~~~-ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~  342 (504)
T 2b5e_A          297 AIHDMTEDL-KYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  342 (504)
T ss_dssp             EEEETTTTE-EEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             EEEeCCcCc-ccCCCCCccchhhccccccccCHHHHHHHHHHHHcCC
Confidence            999874332 12333  44           78999999999987544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=4.4e-19  Score=137.68  Aligned_cols=113  Identities=42%  Similarity=0.806  Sum_probs=99.7

Q ss_pred             CCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      ..+.|..+++++|+..+...+++++|+||++||++|+.+.|.|+++++.+.+..++.++.+|++.+ .+. .++|.++||
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            356799999999999987778999999999999999999999999999998544799999999998 444 589999999


Q ss_pred             EEEEeCCCccCceEec-CCCCHHHHHHHHHHhcCCC
Q 018164          306 LLFYPAGDKANPIKVS-ARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~-g~~~~~~l~~~i~~~~~~~  340 (360)
                      +++|++|....++.|. |.++.+.|.+||.+++...
T Consensus        85 ~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            9999988876667788 5699999999999998754

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.81  E-value=6.6e-19  Score=149.63  Aligned_cols=200  Identities=12%  Similarity=0.025  Sum_probs=158.6

Q ss_pred             cCCHHHHHHHh-h--hCCeEEEEEecC-CCC---ccHHHHHHHHhcCCCceEEEec-----cHHHHHHcCCCCCCCCCEE
Q 018164            3 TNTVNEAEEFL-K--KYQTFVLGMFKK-FEG---SDYEEFVKTAAADNEIQFVETS-----NFEVAKVLYPDIKSTDHFL   70 (360)
Q Consensus         3 i~s~~~~~~~~-~--~~~~~vv~ff~~-~~~---~~~~~f~~~a~~~~~~~F~~~~-----~~~~~~~~~~~~~~~~p~i   70 (360)
                      ..+.+++++++ .  ++++++|.|+.+ +|+   .....+.++|+..+.+.|+.+.     ++++|.++++.   +.|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~---~~Pt~   82 (226)
T 1a8l_A            6 DADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRID---RAPAT   82 (226)
T ss_dssp             HHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCC---SSSEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCC---cCceE
Confidence            34567888888 3  457788888888 776   4677888888767889998855     67899999998   89999


Q ss_pred             EEEecCCCCccccCCCCChHHHHHHHhhccC--CceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHHHHh
Q 018164           71 GIVKSEPDRYTGYEETFIMDKILQFLNYNKF--PLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDIARN  146 (360)
Q Consensus        71 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~--p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~la~~  146 (360)
                      ++|+.+......|.|..+.+.+..|+.....  .....++.+++..+...+.+. ++.||++| ++|+++.+.|.+++.+
T Consensus        83 ~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~  162 (226)
T 1a8l_A           83 TITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIE  162 (226)
T ss_dssp             EEEETTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             EEEcCCceeeEEEeccCcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHh
Confidence            9998654434678888788889999876321  234567888888776666677 89999999 9999999999999999


Q ss_pred             hc----CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          147 FK----GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       147 ~~----~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +.    +++.|+.+|++...   .+++.|||.++ |+++++ ..+. ....+.|..+.+.|.+|++..+
T Consensus       163 ~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~~-~~G~-~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          163 NTKAGKGKILGDMVEAIEYP---EWADQYNVMAV-PKIVIQ-VNGE-DRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHTTCCCEEEEEEEGGGCH---HHHHHTTCCSS-CEEEEE-ETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             cccccCCcEEEEEEEcccCH---HHHHhCCCccc-CeEEEE-eCCc-eeEEEcCCCCHHHHHHHHHHhh
Confidence            98    57999999999775   89999999999 998544 4332 2334578899999999998865

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.4e-18  Score=153.28  Aligned_cols=214  Identities=15%  Similarity=0.176  Sum_probs=163.5

Q ss_pred             cCCceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          100 KFPLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+.|.+++.++|+..+ ..+.+++|.||++| ++|+.+.+.|.++++.+.+.+.|+.+||+... +..+|+.|||.++ 
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~I~~~-   92 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYDVNGF-   92 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTTCCBS-
T ss_pred             CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCCCCcc-
Confidence            34678899999999877 45678999999999 99999999999999999988999999998321 2489999999999 


Q ss_pred             CceEEEEeCC---------------CcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcC-cccc
Q 018164          178 NTVVTAFDNK---------------AISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG-KTFD  241 (360)
Q Consensus       178 p~~~~~~~~~---------------~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~-~~~~  241 (360)
                      |+++++.+++               ......|.|.++.+.|.+|+.+.+.                 ..+..+.. ++++
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~-----------------~~v~~i~~~~~l~  155 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR-----------------SYVKKFVRIDTLG  155 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC-----------------CCEEECSCGGGHH
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc-----------------cccEEcCCHHHHH
Confidence            9996554443               1124556899999999999988653                 23566644 6688


Q ss_pred             ccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC---CCC-----CC------------
Q 018164          242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH---PKL-----QV------------  300 (360)
Q Consensus       242 ~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~---~~~-----~i------------  300 (360)
                      +++...+.+.++.| +..    ....+.|..+|..+++  .+.|+.++...- ..   ..+     +|            
T Consensus       156 ~~l~~~~~~~vi~f-s~~----~~~~~~f~~~A~~~~~--~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~  228 (298)
T 3ed3_A          156 SLLRKSPKLSVVLF-SKQ----DKISPVYKSIALDWLG--KFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQR  228 (298)
T ss_dssp             HHHTSCSSEEEEEE-ESS----SSCCHHHHHHHHHTBT--TEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCceEEEEE-cCC----CcchHHHHHHHHHhhc--CcEEEEEcchHhhhhhhhhhhcccCcchhhhhhccccccc
Confidence            87755556777766 332    2345789999999988  899999985432 11   122     23            


Q ss_pred             -CCCcEEEEEeCCCccCceEecC-CCCHHHHHHHHHHhcCCC
Q 018164          301 -EEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       301 -~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~~~~~  340 (360)
                       ...|++++|+..... ++.|.| ..+.+.|.+||.++.+..
T Consensus       229 ~~~~P~lv~~~~~~~~-~~~y~g~~~~~~~i~~fi~~~~~~~  269 (298)
T 3ed3_A          229 QSDKSKLVVFDADKDK-FWEYEGNSINKNDISKFLRDTFSIT  269 (298)
T ss_dssp             TCSSCEEEEEETTTTE-EEECCCSSCCHHHHHHHHHHHHTCC
T ss_pred             ccCCCeEEEEcCCCCc-eEEeccccCCHHHHHHHHHhhcCCC
Confidence             679999999875543 789995 789999999999766643

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.79  E-value=2.4e-19  Score=132.69  Aligned_cols=98  Identities=21%  Similarity=0.471  Sum_probs=83.4

Q ss_pred             EEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          233 QIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       233 ~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      ..+.. ++|++.+.+ .+++++|.|||+||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. +++|.++||+++
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence            34433 678888754 36799999999999999999999999999885   589999999998 664 789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      |++|+.+  -++.| .+.+.|.+||++|
T Consensus        80 ~~~G~~v--~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           80 MKNGQKL--DSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EETTEEE--EEEES-CCHHHHHHHHHHH
T ss_pred             EECCEEE--EEEeC-cCHHHHHHHHHhc
Confidence            9999775  36778 5899999999986

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.79  E-value=1.5e-18  Score=158.02  Aligned_cols=207  Identities=15%  Similarity=0.162  Sum_probs=156.5

Q ss_pred             CCceeecC-cccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          101 FPLVTKLT-DINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       101 ~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .+.+..++ .+++..+.......+|.||.+.  .......|.++|..+ ..+.|+.++.      ..+|+.+|++.  |+
T Consensus        16 ~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~--~~~~~~~f~~~A~~~-~~~~F~~t~~------~~v~~~~~v~~--~~   84 (361)
T 3uem_A           16 SEFATTLPDGAAAESLVESSEVAVIGFFKDV--ESDSAKQFLQAAEAI-DDIPFGITSN------SDVFSKYQLDK--DG   84 (361)
T ss_dssp             CSSSEECCSHHHHHHHHHTSSEEEEEECSCT--TSHHHHHHHHHHHHC-SSSCEEEECC------HHHHHHTTCSS--SE
T ss_pred             cccceecCCHHHHHHHHhcCCcEEEEEEcCC--CchHHHHHHHHHhcC-CCceEEEECc------HHHHHHhCCCC--Ce
Confidence            34555553 3556666666655556666443  223356899999999 5699987643      27899999975  66


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCC
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPW  259 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~  259 (360)
                      ++++... ...+..|.|.++.+.|.+|+.+...                 +.|..++.+++..++....++++|+||++|
T Consensus        85 i~lfk~f-~~~~~~~~g~~~~~~i~~fi~~~~~-----------------p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~  146 (361)
T 3uem_A           85 VVLFKKF-DEGRNNFEGEVTKENLLDFIKHNQL-----------------PLVIEFTEQTAPKIFGGEIKTHILLFLPKS  146 (361)
T ss_dssp             EEEEESS-TTSEEECCSCCCHHHHHHHHHHHSS-----------------CSEEECSTTTHHHHHSCSCCEEEEEECCSS
T ss_pred             EEEEEec-CCCccccCCcCCHHHHHHHHHHcCC-----------------CcceecCcccHHHHhcCCCCcEEEEEEeCC
Confidence            7544432 2345566899999999999998653                 247889999999887666678899999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC--CC-CC-CCCCCCC--CcEEEEEeCCCccCceEec---CCCCHHHHH
Q 018164          260 CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS--AN-EH-PKLQVEE--YPTLLFYPAGDKANPIKVS---ARSSSKNIA  330 (360)
Q Consensus       260 c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~-~~-~~~~i~~--~Pti~~~~~g~~~~~~~~~---g~~~~~~l~  330 (360)
                      |++|..+.+.|+++|+.+++  ++.|+.+|++  .+ .+ ..+++++  +|+++++..|...  .+|.   |.++.+.|.
T Consensus       147 ~~~~~~~~~~~~~~A~~~~~--~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~--~ky~~~~~~~~~~~l~  222 (361)
T 3uem_A          147 VSDYDGKLSNFKTAAESFKG--KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEM--TKYKPESEELTAERIT  222 (361)
T ss_dssp             SSSHHHHHHHHHHHHGGGTT--TCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--C--CEECCSSCCCCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHccC--ceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcc--cccCCCccccCHHHHH
Confidence            99999999999999999998  7999999998  34 33 3678887  9999999986553  3565   789999999


Q ss_pred             HHHHHhcCCC
Q 018164          331 AFIKEQLKEK  340 (360)
Q Consensus       331 ~~i~~~~~~~  340 (360)
                      +|+.+.+...
T Consensus       223 ~fi~~~l~g~  232 (361)
T 3uem_A          223 EFCHRFLEGK  232 (361)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            9999988644

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.77  E-value=3.1e-18  Score=127.76  Aligned_cols=105  Identities=23%  Similarity=0.530  Sum_probs=93.1

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      +.|..++.++|++.+..++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++. .+++.++||++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            46888999999987777889999999999999999999999999999976  799999999988 443 68999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+..  .++.|..+.+.|.+||++.++
T Consensus        80 ~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           80 LFKNGEVA--ATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEeCCEEE--EEEecCCCHHHHHHHHHHhhC
Confidence            99888664  478899999999999998763

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.76  E-value=1.6e-18  Score=129.92  Aligned_cols=105  Identities=15%  Similarity=0.371  Sum_probs=94.4

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      ..|..++.++|.+.+..++++++|+||++||++|+.+.|.++++++.+.+  ++.|+.+|++.+ ++ ..+++.++||++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE--SFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            45888999999999877889999999999999999999999999999986  799999999998 45 478999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+..  .++.|..+.+.|.+||+++++
T Consensus        82 ~~~~g~~~--~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFKDGEYK--GKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEETTEEE--EEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECCEEE--EEEeccCCHHHHHHHHHHHhc
Confidence            99888663  478999999999999998764

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.76  E-value=3.8e-19  Score=135.64  Aligned_cols=105  Identities=21%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCC--hhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWC--VTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c--~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      .....++.++|++.+....++++|.||++||  ++|+.+.|+++++++.+.+  ++.|+++|++.+ ++. +|+|.++||
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~--~v~~~KVdvDe~~~la~~ygV~siPT   92 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG--RLVAAEVAAEAERGLMARFGVAVCPS   92 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT--TEEEEEECGGGHHHHHHHHTCCSSSE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCccCCE
Confidence            3456899999999986666699999999999  9999999999999999987  899999999998 664 799999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +++|++|+.+.  +..|..+.+.|.++|++++.
T Consensus        93 lilFkdG~~v~--~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           93 LAVVQPERTLG--VIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             EEEEECCEEEE--EEESCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEE--EEeCCCCHHHHHHHHHHHhc
Confidence            99999998864  78899999999999998884

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.76  E-value=3.3e-18  Score=132.38  Aligned_cols=107  Identities=11%  Similarity=0.166  Sum_probs=90.3

Q ss_pred             eEEEcC-cccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          232 VQIVVG-KTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~-~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      |..|.. .+|++.+. +.+++++|.|||+||++|+.+.|.++++|+.+.+  ++.|+++|++++ ++. .++|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~--~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN--FCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--CcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            455654 78998886 4788999999999999999999999999999976  799999999999 775 68999999999


Q ss_pred             EEeCCCccCce-------EecCCCC-HHHHHHHHHHhcCCC
Q 018164          308 FYPAGDKANPI-------KVSARSS-SKNIAAFIKEQLKEK  340 (360)
Q Consensus       308 ~~~~g~~~~~~-------~~~g~~~-~~~l~~~i~~~~~~~  340 (360)
                      +|++|+.+..-       +..|..+ .+.|.++|+.++...
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a  141 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA  141 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence            99999774111       5778776 999999999887543

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.76  E-value=4.9e-18  Score=136.15  Aligned_cols=112  Identities=14%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CceEEEcCccccccccc-cCccEEEEEeC-------CCChhhHHHHHHHHHHHHHhcCC---CCEEEEEEeCCCC-CCC-
Q 018164          230 ANVQIVVGKTFDDLVLN-SHKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGL---DNLVIAKIDASAN-EHP-  296 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~-~~~~~~v~f~~-------~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~-~~~-  296 (360)
                      +.|..|+.++|++++.. .+.+++|.|||       +||++|+.+.|+|+++|+.+.+.   +++.|+++|++.+ ++. 
T Consensus        18 ~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~   97 (178)
T 3ga4_A           18 TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVK   97 (178)
T ss_dssp             TSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHH
T ss_pred             CCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHH
Confidence            46889999999998753 35689999999       49999999999999999998611   2799999999999 664 


Q ss_pred             CCCCCCCcEEEEEeCCCccC----------ceEe---cC-CCCHHHHHHHHHHhcCCCC
Q 018164          297 KLQVEEYPTLLFYPAGDKAN----------PIKV---SA-RSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       297 ~~~i~~~Pti~~~~~g~~~~----------~~~~---~g-~~~~~~l~~~i~~~~~~~~  341 (360)
                      +++|+++||+++|++|....          +..|   .| .++++.|.+||.+.++...
T Consensus        98 ~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i  156 (178)
T 3ga4_A           98 DLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISI  156 (178)
T ss_dssp             HTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCC
T ss_pred             HcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCc
Confidence            79999999999999987542          3556   35 8999999999999998654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.76  E-value=1e-17  Score=128.93  Aligned_cols=106  Identities=22%  Similarity=0.493  Sum_probs=93.7

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      .+.|..++.++|++.+...+++++|+||++||++|+.+.|.++++++.+.+  ++.|+.+|++.+ ++. .+++.++||+
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT--TEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            345889999999987777889999999999999999999999999999976  799999999988 554 6899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|++|+..  .++.|..+.+.|.+||++.++
T Consensus        99 ~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           99 LLFKNGEVA--ATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             EEEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCCEEE--EEEcCCCCHHHHHHHHHHhhC
Confidence            999887653  478899999999999998763

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.75  E-value=5e-18  Score=127.55  Aligned_cols=105  Identities=24%  Similarity=0.415  Sum_probs=93.2

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~  309 (360)
                      |..++.++|++.+  ++++++|.||++||++|+.+.|.+.++++.+.+  ++.++.+|++.+ ++. .+++.++||+++|
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD--KLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT--TCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            6778899999987  788999999999999999999999999999986  799999999988 554 6899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      ++|+..  .++.|..+.+.|.+||.++++.+.-
T Consensus        79 ~~G~~~--~~~~G~~~~~~l~~~l~~~~~~~~~  109 (112)
T 2voc_A           79 KDGEVV--ETSVGFKPKEALQELVNKHLLEHHH  109 (112)
T ss_dssp             ETTEEE--EEEESCCCHHHHHHHHHTTSCSCCC
T ss_pred             eCCEEE--EEEeCCCCHHHHHHHHHHHHHhhcc
Confidence            887653  4789999999999999999886643

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.75  E-value=2.6e-17  Score=140.00  Aligned_cols=195  Identities=11%  Similarity=0.006  Sum_probs=150.7

Q ss_pred             CCHHHHHHHh--hhCCeEEEEEecC-----CCC---ccHHHHHHHH-hc--CCCceEEEec---cHHHHHHcCCCCCCCC
Q 018164            4 NTVNEAEEFL--KKYQTFVLGMFKK-----FEG---SDYEEFVKTA-AA--DNEIQFVETS---NFEVAKVLYPDIKSTD   67 (360)
Q Consensus         4 ~s~~~~~~~~--~~~~~~vv~ff~~-----~~~---~~~~~f~~~a-~~--~~~~~F~~~~---~~~~~~~~~~~~~~~~   67 (360)
                      ++.+++++++  +...+++|.+|.+     +|+   .....+.++| ..  .+.+.|+.+.   ++++|.++++.   +.
T Consensus         6 ~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~   82 (229)
T 2ywm_A            6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVD---RV   82 (229)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCC---BS
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCC---cC
Confidence            4567888888  3344455556633     344   3455666666 44  6789998854   78999999998   89


Q ss_pred             CEEEEEecCCCCccccCCCCChHHHHHHHhhcc--CCceeecCcccccccccCCCce-EEEEEEec-cchHHHHHHHHHH
Q 018164           68 HFLGIVKSEPDRYTGYEETFIMDKILQFLNYNK--FPLVTKLTDINSASVHSSPIKL-QVYVFAKA-DDLKSLLEPLEDI  143 (360)
Q Consensus        68 p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~-~v~f~~~~-~~~~~~~~~~~~l  143 (360)
                      |++++|+. +.....|.|..+.+++..|+....  .+.+..++.+++..+...+.+. ++.||++| ++|+.+.+.|.++
T Consensus        83 Ptl~~~~~-~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~  161 (229)
T 2ywm_A           83 PTIVIEGD-KDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDF  161 (229)
T ss_dssp             SEEEEESS-SCCCEEEESCCCTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHH
T ss_pred             cEEEEECC-CcccceecCCccHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHH
Confidence            99999984 345568899888899999998643  2456788998998877666666 66799999 9999999999999


Q ss_pred             HHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          144 ARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       144 a~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +.++ +++.|+.+|++..+   .+++.|||.++ |+++ + ++   ....+.|..+.+.|.+|++..+.
T Consensus       162 ~~~~-~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~-~-~G---~~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          162 ALAN-DYITSKVIDASENQ---DLAEQFQVVGV-PKIV-I-NK---GVAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHC-TTEEEEEEEGGGCH---HHHHHTTCCSS-SEEE-E-GG---GTEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHC-CCeEEEEEECCCCH---HHHHHcCCccc-CEEE-E-CC---EEEEeeCCCCHHHHHHHHHHHhh
Confidence            9999 46999999999775   89999999999 9985 4 32   23335789999999999998874

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=3.7e-18  Score=133.66  Aligned_cols=117  Identities=27%  Similarity=0.511  Sum_probs=99.5

Q ss_pred             CCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CCC-CCCC
Q 018164          224 IPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EHP-KLQV  300 (360)
Q Consensus       224 ~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~~-~~~i  300 (360)
                      .+....+.|..++.++|++.+ ..+++++|+||++||++|+.+.|.|.++++.+.+. .++.++.+|++.+ ++. .++|
T Consensus        11 ~~~~~~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v   89 (140)
T 2dj1_A           11 LEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDV   89 (140)
T ss_dssp             SCCEEETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTC
T ss_pred             cccCCCCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCC
Confidence            333346779999999999976 55789999999999999999999999999999763 2499999999988 554 6899


Q ss_pred             CCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCCCC
Q 018164          301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSP  344 (360)
Q Consensus       301 ~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~  344 (360)
                      .++||+++|++|+   ..+|.|.++.+.|.+||.++++.....+
T Consensus        90 ~~~Pt~~~~~~G~---~~~~~g~~~~~~l~~~l~~~~~~~~~~~  130 (140)
T 2dj1_A           90 SGYPTIKILKKGQ---AVDYDGSRTQEEIVAKVREVSQPDWTPP  130 (140)
T ss_dssp             CSSSEEEEEETTE---EEECCSCCCHHHHHHHHHHHHSSSCCCC
T ss_pred             CccCeEEEEECCc---EEEcCCCCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999998876   3588999999999999999998765543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=3.5e-18  Score=132.03  Aligned_cols=108  Identities=20%  Similarity=0.397  Sum_probs=96.1

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      .+.|..++.++|++.+..++++++|+||++||++|+.+.|.|+++++.+.+  .+.|+.+|++.+ ++. .+++.++||+
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--VVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            457889999999998778889999999999999999999999999999976  699999999988 554 6899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      ++|.+|+.. ..+|.|.++.+.|.+||.+.+..
T Consensus        94 ~~~~~~~~~-~~~~~G~~~~~~l~~~l~~~l~~  125 (130)
T 2dml_A           94 KIFGANKNK-PEDYQGGRTGEAIVDAALSALRS  125 (130)
T ss_dssp             EEESSCTTS-CEECCSCCSHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCe-EEEeecCCCHHHHHHHHHHHHhc
Confidence            999888763 46899999999999999988753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=132.04  Aligned_cols=108  Identities=22%  Similarity=0.507  Sum_probs=95.8

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhc----CCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK----GLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~----~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      .+.|..++..+|++.+..++++++|+||++||++|+.+.|.|.++++.+.    +  ++.|+.+|++.+ ++. .+++.+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG--KVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT--SEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC--cEEEEEEECCCCHHHHHhCCCCe
Confidence            45688999999999887788999999999999999999999999999987    4  799999999988 443 689999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +||+++|.+|+.  ..+|.|.++.+.|.+||.+.+...
T Consensus        84 ~Pt~~~~~~g~~--~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           84 FPTIKIFQKGES--PVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             SSEEEEEETTEE--EEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             eCeEEEEeCCCc--eEEecCCCCHHHHHHHHHHHhhcc
Confidence            999999998764  468999999999999999988643

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.74  E-value=1.3e-17  Score=124.01  Aligned_cols=103  Identities=24%  Similarity=0.474  Sum_probs=91.7

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.|..+++++|++.+..++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ .+ ..+++.++||++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG--KVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--SEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC--cEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            45888999999988777889999999999999999999999999999986  799999999988 44 368999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      +|++|+..  .++.|..+.+.|.+||+++
T Consensus        80 ~~~~G~~~--~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDGKVI--DKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHT
T ss_pred             EEeCCEEE--EEecCCCCHHHHHHHHHhc
Confidence            99888664  4788999999999999875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.74  E-value=4.8e-18  Score=129.15  Aligned_cols=110  Identities=25%  Similarity=0.481  Sum_probs=95.3

Q ss_pred             CCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       225 p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      |......+..++.++|.+.+.+++++++|+||++||++|+.+.|.+.++++.+.+  ++.++.+|++.+ ++. .+++.+
T Consensus         8 ~~~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~   85 (119)
T 1w4v_A            8 HHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDLAIEYEVSA   85 (119)
T ss_dssp             --CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--SSEEEEEETTTTHHHHHHTTCCS
T ss_pred             ccCCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCHHHHHHcCCCc
Confidence            3334677888999999998878889999999999999999999999999999976  799999999988 454 689999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++++|++|+..  .++.|..+.+.|.+||++.++
T Consensus        86 ~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           86 VPTVLAMKNGDVV--DKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             SSEEEEEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             ccEEEEEeCCcEE--EEEcCCCCHHHHHHHHHHHhC
Confidence            9999999887663  478899999999999998763

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.73  E-value=1.3e-17  Score=125.23  Aligned_cols=105  Identities=23%  Similarity=0.469  Sum_probs=93.2

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.|..++.++|.+.+..++++++|.||++||++|+.+.|.+.++++.+.+  ++.++.+|++.+ ++ ..+++.++||++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD--KIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC--CeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            45789999999988877889999999999999999999999999999976  699999999988 44 468999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+..  .++.|..+.+.|.++|++.+.
T Consensus        83 ~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           83 VYQGGEVA--KTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHTHHHHC
T ss_pred             EEeCCEEE--EEEeCCCCHHHHHHHHHHHhh
Confidence            99888664  478899999999999998764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.73  E-value=5.4e-18  Score=128.83  Aligned_cols=111  Identities=27%  Similarity=0.571  Sum_probs=96.5

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      .+.|..++.++|++.+ .++++++|+||++||++|+.+.|.+.++++.+++. .++.++.+|++.+ .+. .+++.++||
T Consensus         6 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCcEEechhhHHHHH-ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            4568899999999876 56789999999999999999999999999998753 2699999999987 554 679999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +++|++|+...+..|.|.++.+.|.+||+++++.+
T Consensus        85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence            99999887654568999999999999999988754

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.73  E-value=6.8e-18  Score=128.85  Aligned_cols=108  Identities=25%  Similarity=0.481  Sum_probs=93.2

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.|..++.++|.+.+..++++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+ ++ ..+++.++||++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   80 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVK   80 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceEE
Confidence            45788999999877778889999999999999999999999999999987  799999999988 45 468999999999


Q ss_pred             EEeCCCccCceEecCC----CCHHHHHHHHHHhcCCCC
Q 018164          308 FYPAGDKANPIKVSAR----SSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~----~~~~~l~~~i~~~~~~~~  341 (360)
                      +|++|+..  .++.|.    ++.+.|.+||.+.++...
T Consensus        81 ~~~~~~~~--~~~~g~~~~~~~~~~l~~~l~~~l~~~~  116 (122)
T 3aps_A           81 LYQYERAK--KSIWEEQINSRDAKTIAALIYGKLETLQ  116 (122)
T ss_dssp             EEEEEGGG--TEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred             EEeCCCcc--ceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence            99877664  366665    899999999999887543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.73  E-value=1.3e-17  Score=124.99  Aligned_cols=103  Identities=28%  Similarity=0.503  Sum_probs=91.1

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      +.|..++.++|++.+.  +++++|+||++||++|+.+.|.|.++++.+... .++.++.+|++.+ ++ ..+++.++||+
T Consensus         5 ~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            5 STVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            4688999999999885  789999999999999999999999999987643 3799999999998 55 47899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      ++|++|+..  .++.|..+.+.|.+||.++
T Consensus        83 ~~~~~g~~~--~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGGKKV--SEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETTEEE--EEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCCcEE--EeccCCcCHHHHHHHHHhc
Confidence            999988764  4889999999999999976

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.73  E-value=8.1e-18  Score=131.74  Aligned_cols=107  Identities=21%  Similarity=0.355  Sum_probs=95.7

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      ...|..++.++|.+.+..++++++|+||++||++|+.+.|.|.++++.+.+  ++.|+.+|++.+ ++. .++|.++||+
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS--SAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            356899999999977778899999999999999999999999999999987  799999999998 554 6899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      ++|++|+.+  .++.|..+.+.|.+||++.+..
T Consensus        83 ~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           83 KFFCHGRPV--WEQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEETTEEE--EEEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCcEE--EEEcCCCCHHHHHHHHHHHhcc
Confidence            999888763  4789999999999999998763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.73  E-value=1.5e-17  Score=131.50  Aligned_cols=107  Identities=18%  Similarity=0.448  Sum_probs=96.0

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      .+.+..+++++|++.+ ..+++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+ ++ ..++|.++||+
T Consensus        37 ~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG--KVRFVKVNTEAEPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC--ceEEEEEECcCCHHHHHHCCCCccCEE
Confidence            4568899999999988 7789999999999999999999999999999976  799999999998 55 47899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++|++|+..  .++.|.++.+.|.+||++.++..
T Consensus       114 ~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~~~  145 (148)
T 3p2a_A          114 MLYRNGKMI--DMLNGAVPKAPFDNWLDEQLSRD  145 (148)
T ss_dssp             EEEETTEEE--EEESSCCCHHHHHHHHHHHHHSC
T ss_pred             EEEECCeEE--EEEeCCCCHHHHHHHHHHHhccc
Confidence            999988764  47899999999999999998754

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.73  E-value=1.3e-17  Score=123.84  Aligned_cols=101  Identities=26%  Similarity=0.445  Sum_probs=90.6

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      .+..++.++|++.+  ++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++||+++
T Consensus         4 ~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            4 AIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEG--KADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             ceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            57889999999988  789999999999999999999999999999986  699999999998 44 4689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+..  .++.|..+.+.|.++|++++
T Consensus        80 ~~~G~~~--~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           80 FKDGQPV--DKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EETTEEE--EEEESCCCHHHHHHHHHTTC
T ss_pred             EeCCeEE--EEEeCCCCHHHHHHHHHHhC
Confidence            9988664  47899999999999998753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.73  E-value=1.4e-17  Score=124.29  Aligned_cols=103  Identities=20%  Similarity=0.466  Sum_probs=92.1

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.|..+++++|++.+ .++++++|+||++||++|+.+.|.+.++++.+.+  ++.++.+|++.+ ++ ..+++.++||++
T Consensus         4 ~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A            4 DVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLNVDENQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC--CceEEEEccccCHHHHHhcCcccCCEEE
Confidence            467889999999987 5689999999999999999999999999999987  799999999988 55 478999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+..  .++.|..+.+.|.++|++.+
T Consensus        81 ~~~~g~~~--~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IFVNGQLV--DSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHC
T ss_pred             EEcCCcEE--EeeeccCCHHHHHHHHHHHh
Confidence            99888764  47899999999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.73  E-value=9.2e-19  Score=134.05  Aligned_cols=106  Identities=11%  Similarity=0.169  Sum_probs=93.7

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDN-LVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~-~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      .+..++.++|++.+ .++++++|.||++|  |++|+.+.|+++++++.+.+  + +.|+++|++.| ++. +|+|.++||
T Consensus        18 g~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g--~~v~~~KVdvDe~~~lA~~ygV~sIPT   94 (140)
T 2qgv_A           18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD--YTWQVAIADLEQSEAIGDRFGAFRFPA   94 (140)
T ss_dssp             TCEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT--SCCEEEECCHHHHHHHHHHHTCCSSSE
T ss_pred             CCccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC--CeEEEEEEECCCCHHHHHHcCCccCCE
Confidence            46688999999998 47889999999999  99999999999999999987  7 99999999999 665 799999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +++|++|+.+.  +..|..+.+.|.++|++++..+.
T Consensus        95 lilFk~G~~v~--~~~G~~~k~~l~~~i~~~l~~~~  128 (140)
T 2qgv_A           95 TLVFTGGNYRG--VLNGIHPWAELINLMRGLVEPQQ  128 (140)
T ss_dssp             EEEEETTEEEE--EEESCCCHHHHHHHHHHHHC---
T ss_pred             EEEEECCEEEE--EEecCCCHHHHHHHHHHHhcCCC
Confidence            99999998864  78899999999999999986544

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.73  E-value=3.7e-17  Score=138.28  Aligned_cols=114  Identities=21%  Similarity=0.479  Sum_probs=100.0

Q ss_pred             CCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          225 PDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       225 p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      +....+.+..++.++|++.+.+++++++|.||++||++|+.+.|.|+++++.+++  ++.|+.+|++.+ ++. .++|.+
T Consensus         7 ~~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~   84 (222)
T 3dxb_A            7 HHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRG   84 (222)
T ss_dssp             --CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCTTTGGGGTCCS
T ss_pred             CCCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCCCHHHHHHcCCCc
Confidence            3445677899999999998778899999999999999999999999999999987  699999999998 554 689999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      +||+++|++|+..  .++.|.++.+.|.+||.+.+.....
T Consensus        85 ~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~~~~~  122 (222)
T 3dxb_A           85 IPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANLAGSAM  122 (222)
T ss_dssp             BSEEEEEETTEEE--EEEESCCCHHHHHHHHHHHSCCSCC
T ss_pred             CCEEEEEECCeEE--EEeccccChHHHHHHHHhhcccccc
Confidence            9999999988664  4789999999999999999876543

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.72  E-value=1.4e-17  Score=130.55  Aligned_cols=107  Identities=19%  Similarity=0.432  Sum_probs=92.8

Q ss_pred             CCCceEEEcCccccccccc-----------cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC
Q 018164          228 TNANVQIVVGKTFDDLVLN-----------SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH  295 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~-----------~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~  295 (360)
                      ..+.|..++..+|...+.+           .+++++|+||++||++|+.+.|.|.++++.+.+  ++.++.+|++.+ ++
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~   97 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG--KIYIYKVNVDKEPEL   97 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--ceEEEEEECCCCHHH
Confidence            3567899999999998866           578999999999999999999999999999986  799999999998 55


Q ss_pred             -CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          296 -PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       296 -~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                       ..++|.++||+++|..++..  +++.|..+.+.|.+||.+.+.
T Consensus        98 ~~~~~v~~~Pt~~~~~~~g~~--~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           98 ARDFGIQSIPTIWFVPMKGEP--QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHTTCCSSSEEEEECSSSCC--EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHcCCCCcCEEEEEeCCCCE--EEEeCCCCHHHHHHHHHHHHc
Confidence             47899999999999666553  589999999999999998875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.72  E-value=2.6e-17  Score=124.09  Aligned_cols=105  Identities=22%  Similarity=0.405  Sum_probs=93.7

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +.|..++.++|++.+...+++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++|+++
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~   84 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   84 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC--cEEEEEEEcCCCHHHHHHcCCCceeEEE
Confidence            45889999999988777889999999999999999999999999999986  699999999988 44 468999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|...  .++.|.++.+.|.+||++.++
T Consensus        85 ~~~~G~~~--~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           85 LVKGEQIL--DSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEcCCEEE--EEecCCCCHHHHHHHHHHHhc
Confidence            99887663  478899999999999998875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=124.72  Aligned_cols=101  Identities=16%  Similarity=0.247  Sum_probs=86.4

Q ss_pred             CceEEEcCccccccccccCc--cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHK--DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~  307 (360)
                      +.|..++.++|.+.+.+.++  +++|.||++||++|+.+.|.++++|+.+.   ++.|+++|++.. ...++|.++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~-~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC-IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT-STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HHHCCCCCCCEEE
Confidence            45788899999998866555  89999999999999999999999999985   589999999886 4678999999999


Q ss_pred             EEeCCCccCceEecCC-------CCHHHHHHHHHHh
Q 018164          308 FYPAGDKANPIKVSAR-------SSSKNIAAFIKEQ  336 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~-------~~~~~l~~~i~~~  336 (360)
                      +|++|+.+.  ++.|.       .+.+.|..+|.+.
T Consensus        79 ~fk~G~~v~--~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           79 VYKNGQIEA--KFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEETTEEEE--EEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEECCEEEE--EEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999998863  55553       4789999999764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.72  E-value=3.3e-17  Score=127.55  Aligned_cols=110  Identities=25%  Similarity=0.461  Sum_probs=95.0

Q ss_pred             CCCceEEEcCccccccccc-----------cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC
Q 018164          228 TNANVQIVVGKTFDDLVLN-----------SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH  295 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~-----------~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~  295 (360)
                      ....|..++..+|.+.+.+           .+++++|+||++||++|+.+.|.|.++++.+.+  ++.++.+|++.+ ++
T Consensus         7 ~~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l   84 (136)
T 2l5l_A            7 GNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQEL   84 (136)
T ss_dssp             CTTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHH
T ss_pred             cCCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CEEEEEEeCCCCHHH
Confidence            3456889999999988764           568999999999999999999999999999986  699999999988 45


Q ss_pred             C-CCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          296 P-KLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       296 ~-~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      . .+++.++||+++| ++|+.   +.+.|..+.+.|.+||++.+.....
T Consensus        85 ~~~~~v~~~Pt~~~~~~~G~~---~~~~G~~~~~~l~~~l~~~~~~~~~  130 (136)
T 2l5l_A           85 AGAFGIRSIPSILFIPMEGKP---EMAQGAMPKASFKKAIDEFLLKKEG  130 (136)
T ss_dssp             HHHTTCCSSCEEEEECSSSCC---EEEESCCCHHHHHHHHHHHHTSCTT
T ss_pred             HHHcCCCCCCEEEEECCCCcE---EEEeCCCCHHHHHHHHHHHhhccCC
Confidence            4 6899999999999 55544   4789999999999999999876654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.72  E-value=1.5e-17  Score=132.40  Aligned_cols=107  Identities=17%  Similarity=0.444  Sum_probs=94.0

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      .+.+..++..+|.+.+ .++++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+ ++ ..++|.++||+
T Consensus        46 ~~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           46 TGKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG--QVRLAKIDTQAHPAVAGRHRIQGIPAF  122 (155)
T ss_dssp             CSSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTSTHHHHHTTCCSSSEE
T ss_pred             CCCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC--CEEEEEEeCCccHHHHHHcCCCcCCEE
Confidence            4567888999999988 7788999999999999999999999999999986  699999999988 44 47899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++|++|+..  .++.|..+.+.|.+||++.++.+
T Consensus       123 ~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~~~  154 (155)
T 2ppt_A          123 ILFHKGREL--ARAAGARPASELVGFVRGKLGAR  154 (155)
T ss_dssp             EEEETTEEE--EEEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEeCCeEE--EEecCCCCHHHHHHHHHHHhccC
Confidence            999888664  47889999999999999988743

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.72  E-value=1.5e-17  Score=123.73  Aligned_cols=103  Identities=21%  Similarity=0.497  Sum_probs=91.3

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      .|..++.++|.+.+..++++++|.||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++. .+++.++||+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            3678899999998877889999999999999999999999999999976  699999999988 454 689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+..  .++.|..+.+.|.++|++.+
T Consensus        80 ~~~G~~~--~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           80 FKGGKKC--ETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             ESSSSEE--EEEESCCCHHHHHHHHHHHC
T ss_pred             EeCCEEE--EEEeCCCCHHHHHHHHHHHh
Confidence            9877664  47889999999999999875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.72  E-value=2.4e-17  Score=122.23  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=77.8

Q ss_pred             cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCC
Q 018164          236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~  313 (360)
                      +.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+ ++. .+++.++||+++|++|+
T Consensus         7 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~   82 (105)
T 4euy_A            7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK   82 (105)
T ss_dssp             ---CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred             CHHHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence            457788876 678999999999999999999999999999883   699999999998 554 68999999999999886


Q ss_pred             ccCceEecCCCCHHHHHHHHHHhc
Q 018164          314 KANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       314 ~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      .+  .++.|..+.+.|.++|++.+
T Consensus        83 ~~--~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EI--LRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EE--EEEESSCCHHHHHHHHHTTC
T ss_pred             EE--EEEeCCcCHHHHHHHHHHhh
Confidence            64  47889999999999998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.71  E-value=3.8e-17  Score=121.02  Aligned_cols=102  Identities=24%  Similarity=0.556  Sum_probs=90.4

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..+++++|++.+..++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++||++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC--ceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            567889999998877889999999999999999999999999999976  699999999988 45 46899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|+..  .++.|..+.+.+.++|++.+
T Consensus        80 ~~g~~~--~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 KNGERK--ESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ETTEEE--EEEEECCCHHHHHHHHHHHC
T ss_pred             eCCeEE--EEEecCCCHHHHHHHHHhhC
Confidence            888664  47889999999999998763

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.71  E-value=2.4e-17  Score=125.51  Aligned_cols=107  Identities=23%  Similarity=0.466  Sum_probs=93.4

Q ss_pred             CCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcE
Q 018164          228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPT  305 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pt  305 (360)
                      ..+.|..++..+|.+.+...+++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ .+ ..+++.++||
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~i~~~Pt   87 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNPETARNFQVVSIPT   87 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            3456889999999988877889999999999999999999999999999976  799999999988 44 4689999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +++|++|+..  .++.|..+.+.|.+||++.+.
T Consensus        88 ~~~~~~g~~~--~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           88 LILFKDGQPV--KRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEETTEEE--EEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEECCEEE--EEecCCCCHHHHHHHHHHHHh
Confidence            9999988663  478999999999999987654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.70  E-value=1.4e-17  Score=127.17  Aligned_cols=105  Identities=23%  Similarity=0.530  Sum_probs=87.0

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCCh--------------hhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCV--------------TCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E  294 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~--------------~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~  294 (360)
                      +.|..++.++|++.+..++++++|.||++||+              +|+.+.|.++++++.+.+  ++.++.+|++.+ +
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~--~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC--CeEEEEEECCCCHH
Confidence            35788999999987778899999999999999              999999999999999876  699999999998 5


Q ss_pred             CC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          295 HP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       295 ~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +. .++|.++||+++|++|+..  .++.|.++.+.|.+||++.++
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEE--EEEESCCCHHHHHHHHTTTCC
T ss_pred             HHHHcCCCccCEEEEEECCEEE--EEEeCCCCHHHHHHHHHHHhC
Confidence            54 6899999999999888764  478999999999999987653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.70  E-value=4.3e-17  Score=120.80  Aligned_cols=101  Identities=18%  Similarity=0.462  Sum_probs=88.1

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..++.++|++. ..++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++||+++|
T Consensus         2 v~~l~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   78 (105)
T 1nsw_A            2 TMTLTDANFQQA-IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHH-HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHhHHHH-HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence            578899999955 46778999999999999999999999999999976  699999999988 45 46899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|+..  .++.|..+.+.|.++|++.+
T Consensus        79 ~~G~~~--~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           79 KGGRPV--KQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEE--EEEESCCCHHHHHHHTTTTT
T ss_pred             eCCeEE--EEEecCCCHHHHHHHHHHHh
Confidence            888653  47889999999999998764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.70  E-value=4.6e-17  Score=121.35  Aligned_cols=104  Identities=25%  Similarity=0.542  Sum_probs=90.3

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      .|..++.++|++.+ ..+++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++|++++
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (109)
T 2yzu_A            2 KPIEVTDQNFDETL-GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG--KLLVAKLDVDENPKTAMRYRVMSIPTVIL   78 (109)
T ss_dssp             CCEECCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEccHhHHHHHh-cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC--ceEEEEEECCCCHhHHHhCCCCcCCEEEE
Confidence            47789999999654 6788999999999999999999999999999986  799999999988 44 4789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      |++|+..  .++.|..+.+.|.+||++.++.
T Consensus        79 ~~~g~~~--~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           79 FKDGQPV--EVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EETTEEE--EEEESCCCHHHHHHHHHTTC--
T ss_pred             EeCCcEe--eeEeCCCCHHHHHHHHHHHhhh
Confidence            9888664  4788999999999999988764

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=121.35  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=88.0

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      +|+|.+++++|++.++++|||||++++++..+.|.++|+..++++|++|++++++++++++    .|+|++||++++...
T Consensus        25 ~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~----~~~vvlfkkfde~~~  100 (124)
T 2l4c_A           25 WLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNIT----GNTICLFRLVDNEQL  100 (124)
T ss_dssp             ECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEECCHHHHHHTTCC----SSCEEEEETTTTEEE
T ss_pred             EcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHhCCCceEEEEChHHHHHHcCCC----CCeEEEEEcCCCCce
Confidence            4889999999999999999999999999999999999944499999999999999999986    699999999988888


Q ss_pred             ccCC----CCChHHHHHHHhhccC
Q 018164           82 GYEE----TFIMDKILQFLNYNKF  101 (360)
Q Consensus        82 ~y~g----~~~~~~l~~fi~~~~~  101 (360)
                      .|.|    +++.++|.+||..+++
T Consensus       101 ~~~g~~~~~~~~~~L~~FI~~n~l  124 (124)
T 2l4c_A          101 NLEDEDIESIDATKLSRFIEINSL  124 (124)
T ss_dssp             EECHHHHTTCCHHHHHHHHHHHCC
T ss_pred             eecCcccCCCCHHHHHHHHHHhcC
Confidence            8986    7899999999998763

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.69  E-value=3.1e-16  Score=133.06  Aligned_cols=203  Identities=16%  Similarity=0.140  Sum_probs=153.3

Q ss_pred             eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      +...+.++++.++.....++|.||.++  |....+.|.++|..+. .+.|+...   .   ..+|+.+|+++  |+++++
T Consensus        12 ~~l~s~~~~~~~l~~~~v~vVgff~~~--~~~~~~~f~~~A~~l~-~~~F~~t~---~---~~v~~~~~v~~--p~i~lf   80 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAATEVAVIGFFQDL--EIPAVPILHSMVQKFP-GVSFGIST---D---SEVLTHYNITG--NTICLF   80 (227)
T ss_dssp             EECCSHHHHHHHHHTSSEEEEEECSCS--CSTHHHHHHHHTTTCT-TSEEEEEC---C---HHHHHHTTCCS--SEEEEE
T ss_pred             eeeCCHHHHHHHHhcCCeEEEEEecCC--CchhHHHHHHHHHhCC-CceEEEEC---C---HHHHHHcCCCC--CeEEEE
Confidence            444455777777766767778888776  7788899999999995 79998853   2   27899999974  777544


Q ss_pred             EeCCCcccccCC----CCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCC
Q 018164          184 FDNKAISKFLLE----SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPW  259 (360)
Q Consensus       184 ~~~~~~~~y~~~----~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~  259 (360)
                      . ........|.    |.++.+.|.+||....-                 +.|..++..|+..+....-...++.|+.+|
T Consensus        81 k-~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~-----------------plv~e~t~~n~~~~~~~~~~~~~l~f~~~~  142 (227)
T 4f9z_D           81 R-LVDNEQLNLEDEDIESIDATKLSRFIEINSL-----------------HMVTEYNPVTVIGLFNSVIQIHLLLIMNKA  142 (227)
T ss_dssp             E-TTTTEEEEECHHHHHTCCHHHHHHHHHHHCC-----------------CSEEECCHHHHHHHHHSSCCEEEEEEECTT
T ss_pred             E-ecCcccccccccccCCCCHHHHHHHHHHhCC-----------------CceeecCcccHHHHhccCCceEEEEEEcCC
Confidence            4 3333333445    47899999999999632                 248889999988876333345566778999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--C--CCCCCCCC--CCcEEEEEeCCCccCceEec-CCCCHHHHHHH
Q 018164          260 CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N--EHPKLQVE--EYPTLLFYPAGDKANPIKVS-ARSSSKNIAAF  332 (360)
Q Consensus       260 c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~--~~~~~~i~--~~Pti~~~~~g~~~~~~~~~-g~~~~~~l~~~  332 (360)
                      |.+|..+.+.|+++|+.+++  ++.|+.+|++.  +  .+..+++.  .+|+++++..+... ...+. |..+.+.|.+|
T Consensus       143 ~~~~~~~~~~~~~vAk~~k~--~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~-ky~~~~~~~t~~~i~~F  219 (227)
T 4f9z_D          143 SPEYEENMHRYQKAAKLFQG--KILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDE-WDTLPTAEVSVEHVQNF  219 (227)
T ss_dssp             STTHHHHHHHHHHHHHHTTT--TCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCC-EEEETTCCCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhC--CEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCc-cccCCcCCCCHHHHHHH
Confidence            99999999999999999998  79999999975  3  22456777  89999999865432 23443 78999999999


Q ss_pred             HHHhcC
Q 018164          333 IKEQLK  338 (360)
Q Consensus       333 i~~~~~  338 (360)
                      +++.+.
T Consensus       220 v~~~~~  225 (227)
T 4f9z_D          220 CDGFLS  225 (227)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            998765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.69  E-value=1e-16  Score=120.15  Aligned_cols=103  Identities=22%  Similarity=0.370  Sum_probs=88.0

Q ss_pred             CCceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CCC-CCCCCCCc
Q 018164          229 NANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP-KLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~~-~~~i~~~P  304 (360)
                      .+.|..++.++|++.+.+ .+++++|+||++||++|+.+.|.+.++++.+.   ++.++.+|++ .+ ++. .+++.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcchHHHHHHcCCCeee
Confidence            467999999999998865 57899999999999999999999999999986   4899999998 44 443 67999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++++++|+..  .++.|.. .+.|.++|++.+
T Consensus        81 t~~~~~~G~~~--~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKENSVV--GEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSSSEE--EEEESSC-HHHHHHHHHHHH
T ss_pred             EEEEEeCCcEE--EEEcCCC-HHHHHHHHHHhh
Confidence            99999888764  3677874 899999998764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.69  E-value=2.8e-17  Score=124.27  Aligned_cols=101  Identities=19%  Similarity=0.377  Sum_probs=86.7

Q ss_pred             ceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          231 NVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      .....+.++|++.+.+ ++++++|.||++||++|+.+.|.|+++++.+.+   +.|+.+|++.+ ++ ..++|.++||++
T Consensus        13 ~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~vd~d~~~~l~~~~~v~~~Pt~~   89 (116)
T 3qfa_C           13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTFQ   89 (116)
T ss_dssp             CBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT---SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHcCCccccEEE
Confidence            4455677899998743 688999999999999999999999999998864   99999999998 55 478999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+.+  .++.|. +.+.|.++|++++
T Consensus        90 ~~~~G~~~--~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           90 FFKKGQKV--GEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EESSSSEE--EEEESC-CHHHHHHHHHHHC
T ss_pred             EEeCCeEE--EEEcCC-CHHHHHHHHHHhC
Confidence            99888764  468898 9999999998764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.68  E-value=1.2e-16  Score=125.02  Aligned_cols=105  Identities=22%  Similarity=0.411  Sum_probs=79.1

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      +.|..+++++|.+.+...++ ++|+||++||++|+.+.|.|++++..+.+  ++.|+.+|++.+ ++. .+++.++||++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  109 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAG--RLKVVKVNVDEHPGLAARYGVRSVPTLV  109 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHCCCCccCEEE
Confidence            56788899999998876666 99999999999999999999999999986  799999999988 554 68999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      +|++|...  ..+.|..+.+.|.+||.+.++.
T Consensus       110 ~~~~G~~~--~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          110 LFRRGAPV--ATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHHTC
T ss_pred             EEeCCcEE--EEEeCCCCHHHHHHHHHHHHcc
Confidence            99888664  4788999999999999988753

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.68  E-value=9.1e-17  Score=118.62  Aligned_cols=101  Identities=24%  Similarity=0.488  Sum_probs=88.9

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..++.++|++.+ .++++++|+||++||++|+.+.+.++++++.+.+   +.++.+|++.+ ++ ..+++.++||+++|
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   76 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFF   76 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC---ceEEEEECCCCHHHHHhCCccccCEEEEE
Confidence            4578889999987 6788999999999999999999999999999864   89999999988 45 46899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+..  .++.|..+.+.|.+||++.++
T Consensus        77 ~~g~~~--~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           77 KDGEPV--DEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ETTEEE--EEEESCCCHHHHHHHHHHHHT
T ss_pred             ECCeEh--hhccCCCCHHHHHHHHHHHhc
Confidence            888664  478899999999999998864

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=122.87  Aligned_cols=105  Identities=21%  Similarity=0.466  Sum_probs=90.2

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      .+.|..++.++|++.+.   ++++|+||++||++|+.+.|.|.++++.+.+ .++.|+.+|++.+ ++ ..+++.++||+
T Consensus         6 ~~~v~~l~~~~f~~~~~---~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            6 SGNVRVITDENWRELLE---GDWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCSEEECCTTTHHHHTS---SEEEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCccEEecHHHHHHHhC---CCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            45688999999998762   3499999999999999999999999999874 2699999999988 45 46899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++|++|+.   .++.|.++.+.|.+||.+.+...
T Consensus        82 ~~~~~G~~---~~~~G~~~~~~l~~~l~~~~~~~  112 (126)
T 1x5e_A           82 YHCKDGEF---RRYQGPRTKKDFINFISDKEWKS  112 (126)
T ss_dssp             EEEETTEE---EECCSCCCHHHHHHHHHTCGGGG
T ss_pred             EEEeCCeE---EEeecCCCHHHHHHHHHHHhhcc
Confidence            99987752   58999999999999999887643

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.68  E-value=1.3e-16  Score=118.72  Aligned_cols=101  Identities=13%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             eEEE-cCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          232 VQIV-VGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      |..+ +.++|++.+.+ ++++++|+||++||++|+.+.|.++++++.+.   ++.|+.+|++.+ ++. .+++.++||++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4555 45789888753 68899999999999999999999999999983   699999999988 554 68999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+..  .++.|. +.++|.+||+++++
T Consensus        80 ~~~~G~~~--~~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           80 FFRNKVRI--DQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEE--EEEESS-CHHHHHHHHHHHHC
T ss_pred             EEECCeEE--EEEeCC-CHHHHHHHHHHhcC
Confidence            99988664  367885 45669999998764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=2.7e-16  Score=122.12  Aligned_cols=106  Identities=15%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             CCceEEEcCcccccccccc--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti  306 (360)
                      .+.|..++.++|.+.+...  +++++|+||++||++|+.+.|.|++++..+.   ++.|+.+|++.+. ..++|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~-~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI-EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC-SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc-ccCCCCCCCEE
Confidence            4668888889999988653  3689999999999999999999999999884   6999999998764 67899999999


Q ss_pred             EEEeCCCccCceEecCCC-------CHHHHHHHHHHhcCCC
Q 018164          307 LFYPAGDKANPIKVSARS-------SSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~-------~~~~l~~~i~~~~~~~  340 (360)
                      ++|++|+.+.  ++.|..       +.+.|.++|.++...+
T Consensus        85 ~~~~~G~~v~--~~~G~~~~~~~~~~~~~l~~~l~~~~~i~  123 (135)
T 2dbc_A           85 FVYKNGQIEG--KFIGIIECGGINLKLEELEWKLSEVGAIQ  123 (135)
T ss_dssp             EEESSSSCSE--EEESTTTTTCTTCCHHHHHHHHHHHTSSC
T ss_pred             EEEECCEEEE--EEEeEEeeCCCcCCHHHHHHHHHHcCCcc
Confidence            9999887753  667764       7899999999885543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.67  E-value=2.1e-17  Score=138.50  Aligned_cols=129  Identities=17%  Similarity=0.264  Sum_probs=105.1

Q ss_pred             HHHHHHHHhcCccCCccccCCCCCCCCCceEEE-cCccccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcC
Q 018164          203 IEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIV-VGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKG  279 (360)
Q Consensus       203 i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l-~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~  279 (360)
                      ...|++.|..+++.+..++.+ |....+.|..+ +..+|.+.+.+..  ++++|.||++||++|+.+.|.|.++|..+. 
T Consensus        73 d~~fl~~~r~~Rl~el~~~~~-~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-  150 (217)
T 2trc_P           73 DEGCLRKYRRQCMQDMHQKLS-FGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-  150 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-
Confidence            457899998888876654433 44456788998 8899999886543  799999999999999999999999999884 


Q ss_pred             CCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCH-------HHHHHHHHHhcC
Q 018164          280 LDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSS-------KNIAAFIKEQLK  338 (360)
Q Consensus       280 ~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~-------~~l~~~i~~~~~  338 (360)
                        ++.|+.||++ + ++. .++|.++||+++|++|..+  .++.|..+.       +.|.+||.++.-
T Consensus       151 --~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~G~~v--~~~~G~~~~~g~~~~~~~Le~~L~~~g~  213 (217)
T 2trc_P          151 --MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKGGELI--SNFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             --TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEETTEEE--EEETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             --CeEEEEEECC-cHHHHHHCCCCCCCEEEEEECCEEE--EEEeCCcccCcccCCHHHHHHHHHHcCC
Confidence              6999999998 5 554 6899999999999988664  467786664       999999997643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.67  E-value=1.7e-15  Score=130.07  Aligned_cols=219  Identities=13%  Similarity=0.092  Sum_probs=152.8

Q ss_pred             CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..|..++.++|...+ ..+.+++|.||++| ++|+.+.+.|.++++++.+   .+.|+.+||+... +..+|+.|||.++
T Consensus        12 ~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~-~~~l~~~~~v~~~   90 (244)
T 3q6o_A           12 DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET-NSAVCRDFNIPGF   90 (244)
T ss_dssp             SSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT-THHHHHHTTCCSS
T ss_pred             CCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh-hHHHHHHcCCCcc
Confidence            457889999998754 55578999999999 9999999999999999997   7999999995321 2489999999999


Q ss_pred             CCceEEEEeCCC---cccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccc-cCccEE
Q 018164          177 KNTVVTAFDNKA---ISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLN-SHKDVL  252 (360)
Q Consensus       177 ~p~~~~~~~~~~---~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~-~~~~~~  252 (360)
                       |+++++..+..   +..+.+.| .+.+.|.+|+.+++.....      ..|.. ..++..++..++.+++.. ..+.+.
T Consensus        91 -Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~------~~p~~-~p~l~~~~~~~l~~~~~~~~~~~~a  161 (244)
T 3q6o_A           91 -PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD------TWPPA-CPPLEPAXLEEIDGFFARNNEEYLA  161 (244)
T ss_dssp             -SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT------SCCTT-SCCCSCCCHHHHHTHHHHCCCSEEE
T ss_pred             -CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc------cCCCC-CCCcccccHHHHHHHhhcCCCceEE
Confidence             99965543322   22334455 7999999999999865321      22221 112333445667666533 345666


Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCccCceEec-CCCCHHHHH
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANPIKVS-ARSSSKNIA  330 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~~~~~~~~-g~~~~~~l~  330 (360)
                      +.|....|.       ...+++..+....++.+..++-+...+ ..++|+++|+++++.++++.  ..+. +..+.+.+.
T Consensus       162 l~f~~~~~~-------~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~~--~~~~~~~~~r~~~~  232 (244)
T 3q6o_A          162 LIFEXGGSY-------LAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSV--SRVPVLMESRSFYT  232 (244)
T ss_dssp             EEEECTTCC-------HHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCE--EECCCSSSSHHHHH
T ss_pred             EEEEECCcc-------hHHHHHHHhccCCceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCCe--EeeccccccHHHHH
Confidence            777766543       345556666655578898888654444 47899999999999876663  3555 456667777


Q ss_pred             HHHHHhcCC
Q 018164          331 AFIKEQLKE  339 (360)
Q Consensus       331 ~~i~~~~~~  339 (360)
                      .+|++..+.
T Consensus       233 ~~l~~~~~~  241 (244)
T 3q6o_A          233 AYLQRLSGL  241 (244)
T ss_dssp             HHHHTC---
T ss_pred             HHHHhCCCC
Confidence            788776654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=1.4e-16  Score=133.55  Aligned_cols=108  Identities=21%  Similarity=0.417  Sum_probs=95.9

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      ...|..+++.+|+..+ .++++++|.||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+ .+. .++|.++||+
T Consensus        96 ~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~  172 (210)
T 3apq_A           96 DPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG--LLRIGAVNCGDDRMLCRMKGVNSYPSL  172 (210)
T ss_dssp             CTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT--TBEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC--ceEEEEEECCccHHHHHHcCCCcCCeE
Confidence            4568899999999987 6788999999999999999999999999999976  799999999988 454 6899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ++|++|..  ..++.|.++.+.|.+||.+.+....
T Consensus       173 ~~~~~G~~--~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          173 FIFRSGMA--AVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             EEECTTSC--CEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             EEEECCCc--eeEecCCCCHHHHHHHHHHhCcccc
Confidence            99988876  4589999999999999999987654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.67  E-value=2.1e-16  Score=117.25  Aligned_cols=101  Identities=25%  Similarity=0.492  Sum_probs=86.3

Q ss_pred             eEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          232 VQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      |..++. ++|++.+.+ ++++++|.||++||++|+.+.|.++++++.+++  ++.++.+|++.+ ++ ..+++.++||++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC--CeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456667 788888754 688999999999999999999999999999975  799999999988 45 468999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+..  .++.| .+.+.|.++|++.+
T Consensus        80 ~~~~G~~~--~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           80 FLKNGVKV--EEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEETTEEE--EEEES-CCHHHHHHHHHHTC
T ss_pred             EEcCCcEE--EEEcC-CCHHHHHHHHHHhC
Confidence            99988664  47788 78999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.66  E-value=1.7e-16  Score=139.77  Aligned_cols=104  Identities=17%  Similarity=0.354  Sum_probs=93.0

Q ss_pred             CceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          230 ANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      +.|..++.++|++.+.. .+++++|.||++||++|+.+.|.|+++++.+.+  ++.|+.||++.+ ++ ..++|.++||+
T Consensus         7 ~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             TTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS--SSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            46899999999997743 378999999999999999999999999999986  799999999998 55 47899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|++|+.+  .++.|..+.+.+.+||.+.+
T Consensus        85 ~~~~~G~~~--~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQNGQPV--DGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEETTEEE--EEEESCCCHHHHHHHHHHHS
T ss_pred             EEEECCEEE--EEeeCCCCHHHHHHHHHHHc
Confidence            999988664  47899999999999999886

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.66  E-value=1.7e-16  Score=134.76  Aligned_cols=106  Identities=13%  Similarity=0.295  Sum_probs=91.4

Q ss_pred             CCceEEEcCccccccccccCccEEEEEe--CCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCC-----C-CCC-CC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVY--TPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASA-----N-EHP-KL  298 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~-----~-~~~-~~  298 (360)
                      .+.|..++..+|++++ +++++++|.||  ||||+    +.|.|+++|..+.+ .+++.|++|||+.     + +++ .+
T Consensus        15 ~~~v~~Lt~~nF~~vi-~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CTTCEECCTTTHHHHH-TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCCcEECCHHHHHHHH-hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            3568899999999955 77889999999  99999    99999999999964 4489999999998     6 554 68


Q ss_pred             CCC--CCcEEEEEeCCCccCceEe--cCCCCHHHHHHHHHHhcCCC
Q 018164          299 QVE--EYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       299 ~i~--~~Pti~~~~~g~~~~~~~~--~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +|.  ++||+++|+ |....+.+|  .|.++.+.|.+||+++++..
T Consensus        90 ~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~  134 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLY  134 (248)
T ss_dssp             TCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCC
T ss_pred             CCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccc
Confidence            999  999999999 873346789  99999999999999998643

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.66  E-value=3.2e-16  Score=119.97  Aligned_cols=101  Identities=24%  Similarity=0.388  Sum_probs=88.7

Q ss_pred             ceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          231 NVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       231 ~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      -|..++. ++|++.+ ..+++++|.||++||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. .+++.++||++
T Consensus        20 mv~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   95 (125)
T 1r26_A           20 SVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFI   95 (125)
T ss_dssp             CCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            3888998 9999987 778899999999999999999999999999984   699999999988 554 68999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|..+  .++.| .+.+.|.++|.+.+.
T Consensus        96 i~~~G~~~--~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           96 IARSGKML--GHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEETTEEE--EEEES-SCHHHHHHHHHHHHH
T ss_pred             EEeCCeEE--EEEeC-CCHHHHHHHHHHHhc
Confidence            99888664  46788 688999999998764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.66  E-value=2.6e-16  Score=117.44  Aligned_cols=100  Identities=25%  Similarity=0.462  Sum_probs=84.7

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      .....+..+|++.+ .++++++|+||++||++|+.+.|.++++++.+.   ++.|+.+|++.+ ++ ..+++.++||+++
T Consensus         8 ~~~~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            8 VTQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CEECCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ccCCCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            34455668898876 568999999999999999999999999999986   489999999988 55 4689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+.+  .++.|. +.+.|.++|++++
T Consensus        84 ~~~G~~~--~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           84 FKNGKEV--AKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             EETTEEE--EEEESS-CHHHHHHHHHHHC
T ss_pred             EECCEEE--EEEeCC-CHHHHHHHHHhhC
Confidence            9987664  477887 7799999998764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.66  E-value=1.7e-16  Score=125.38  Aligned_cols=101  Identities=13%  Similarity=0.183  Sum_probs=86.8

Q ss_pred             cCcccccccc-ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCC
Q 018164          236 VGKTFDDLVL-NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAG  312 (360)
Q Consensus       236 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g  312 (360)
                      +.++|++.+. ..+++++|.|||+||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++. .++|.++||++++++|
T Consensus        10 ~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   87 (149)
T 3gix_A           10 SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK--MAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG   87 (149)
T ss_dssp             SHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT--TEEEEEEETTTCCHHHHHTTCCSSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC--ceEEEEEECCcCHHHHHHcCCCccCeEEEEECC
Confidence            4578888876 5689999999999999999999999999999876  699999999888 443 6899999999999998


Q ss_pred             Ccc-------CceEecC-CCCHHHHHHHHHHhcC
Q 018164          313 DKA-------NPIKVSA-RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       313 ~~~-------~~~~~~g-~~~~~~l~~~i~~~~~  338 (360)
                      +.+       ...++.| ..+.+.|.++|++...
T Consensus        88 ~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           88 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             EEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            765       0036789 8999999999998864

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=134.51  Aligned_cols=112  Identities=19%  Similarity=0.361  Sum_probs=94.2

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCC--C-CCC-CCCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASA--N-EHP-KLQVEEY  303 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~--~-~~~-~~~i~~~  303 (360)
                      .+.|..+++++|++.+.+++++++|.|||+||++|+.+.|.|+++++.+.+ ...+.|+.+||+.  + ++. .++|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            467999999999999988889999999999999999999999999999975 2369999999954  4 443 6899999


Q ss_pred             cEEEEEeCCCcc---CceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          304 PTLLFYPAGDKA---NPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       304 Pti~~~~~g~~~---~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ||+++|++|.+.   ..+.+.| ++.+.|.++|.+.+....
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhcc
Confidence            999999987653   1335556 799999999999887554

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.65  E-value=2.9e-16  Score=117.73  Aligned_cols=104  Identities=20%  Similarity=0.446  Sum_probs=88.5

Q ss_pred             CceEEEc-Cccccccccc-c--CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCC
Q 018164          230 ANVQIVV-GKTFDDLVLN-S--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEY  303 (360)
Q Consensus       230 ~~v~~l~-~~~~~~~~~~-~--~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~  303 (360)
                      +.|..++ .++|++.+.. .  +++++|.||++||++|+.+.|.|+++++.+.+  ++.++.+|++.+ ++. .+++.++
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~   79 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCcc
Confidence            3467774 5789988754 3  78999999999999999999999999999976  799999999988 553 6899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ||+++|++|+..  .++.|. +.+.|.+||++.+.
T Consensus        80 Pt~~~~~~G~~~--~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           80 PTFHVYKDGVKA--DDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEETTEEE--EEEESC-CHHHHHHHHHHHHC
T ss_pred             cEEEEEECCeEE--EEEcCC-CHHHHHHHHHHHhc
Confidence            999999888664  478888 99999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.65  E-value=9.6e-17  Score=136.24  Aligned_cols=131  Identities=15%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             HHHHHHHhcCccCCccccCCCCCCCCCceEEE-cCccccccccc--cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC
Q 018164          204 EEFCSRLLHGTLTPYLKSQPIPDNTNANVQIV-VGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL  280 (360)
Q Consensus       204 ~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l-~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~  280 (360)
                      ..|++.|..+++.+..++.+ |....+.|..+ +..+|.+.+..  .+++++|.||++||++|+.+.|.|.++|..+.  
T Consensus        87 e~fL~~~r~~Rl~el~~~~~-~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--  163 (245)
T 1a0r_P           87 ENCLRKYRRQCMQDMHQKLS-FGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP--  163 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--
T ss_pred             HHHHHHHHHHHHHHHHHHhh-ccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--
Confidence            35888888888877765543 34456788999 67999998854  37899999999999999999999999999986  


Q ss_pred             CCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCccCceEecCC-------CCHHHHHHHHHHhcCCC
Q 018164          281 DNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANPIKVSAR-------SSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       281 ~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~-------~~~~~l~~~i~~~~~~~  340 (360)
                       ++.|+.||++..++ ..++|.++||+++|++|..+.  ++.|.       .+.+.|..||.++...+
T Consensus       164 -~v~f~kVd~d~~~l~~~~~I~~~PTll~~~~G~~v~--~~vG~~~~~g~~~~~e~Le~~L~~~g~l~  228 (245)
T 1a0r_P          164 -MVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLS--NFISVTEQLAEEFFTGDVESFLNEYGLLP  228 (245)
T ss_dssp             -TSEEEEEEHHHHCCTTSSCTTTCSEEEEEETTEEEE--EETTGGGGSCTTCCHHHHHHHHHTTTCSC
T ss_pred             -CCEEEEEeCCcHHHHHHCCCCCCCEEEEEECCEEEE--EEeCCcccccccccHHHHHHHHHHcCCCC
Confidence             48999999977544 468999999999999887642  44442       46788999999875543

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.65  E-value=2.8e-16  Score=120.96  Aligned_cols=94  Identities=22%  Similarity=0.418  Sum_probs=81.1

Q ss_pred             cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccC
Q 018164          239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~  316 (360)
                      ++.+....++++++|.||++||++|+.+.|.++++++.+++  ++.++.+|++.+ .+. .++|.++||+++|++|+.. 
T Consensus        33 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~-  109 (128)
T 3ul3_B           33 NIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML-  109 (128)
T ss_dssp             SSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG--GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE-
T ss_pred             cHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE-
Confidence            33344456789999999999999999999999999999986  799999999988 554 6899999999999888664 


Q ss_pred             ceEecCCCCHHHHHHHHHHh
Q 018164          317 PIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       317 ~~~~~g~~~~~~l~~~i~~~  336 (360)
                       .++.|.++.+.|.+||+++
T Consensus       110 -~~~~G~~~~~~l~~~l~~~  128 (128)
T 3ul3_B          110 -ARKDHFVSSNDLIALIKKH  128 (128)
T ss_dssp             -EEESSCCCHHHHHHHHTTC
T ss_pred             -EEecCCCCHHHHHHHHHhC
Confidence             5789999999999999753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.65  E-value=3.7e-16  Score=119.12  Aligned_cols=104  Identities=21%  Similarity=0.360  Sum_probs=89.7

Q ss_pred             CceEEEcCccccccccc---cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCc
Q 018164          230 ANVQIVVGKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYP  304 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~P  304 (360)
                      ..+..++.++|++.+..   .+++++|+||++||++|+.+.|.|+++++.+.+   +.|+.+|++.+ ++ ..+++.++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~P   89 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAMP   89 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---cEEEEEECCCCHHHHHHcCCCccc
Confidence            34667788999998865   688999999999999999999999999998864   89999999988 45 468999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      |+++|++|+..  .++.|.. .+.|.+||++.++.
T Consensus        90 t~~~~~~G~~~--~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           90 TFLFMKEGDVK--DRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             EEEEEETTEEE--EEEESSC-HHHHHHHHHHHHSC
T ss_pred             EEEEEeCCEEE--EEEeCcC-HHHHHHHHHHHhcc
Confidence            99999888664  4788988 99999999988753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.7e-16  Score=117.19  Aligned_cols=103  Identities=18%  Similarity=0.315  Sum_probs=83.5

Q ss_pred             eEEEcC-cccccccc--ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          232 VQIVVG-KTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       232 v~~l~~-~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      |..++. ++|++.+.  ..+++++|.||++||++|+.+.|.++++++.++. +++.|+.+|++.+ ++ ..+++.++||+
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            667887 88998874  3478999999999999999999999999998643 2699999999988 45 46899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|++|+..  .++.|. ..+.|.++|.+.++
T Consensus        81 ~~~~~G~~~--~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           81 IIIHKGTIL--KELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEEETTEEE--EEECSC-CHHHHHHHHHHHHH
T ss_pred             EEEECCEEE--EEecCC-CHHHHHHHHHHHHh
Confidence            999888664  367787 45579999988764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.64  E-value=1.1e-15  Score=119.71  Aligned_cols=102  Identities=16%  Similarity=0.240  Sum_probs=83.5

Q ss_pred             cCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCC
Q 018164          236 VGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAG  312 (360)
Q Consensus       236 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g  312 (360)
                      ++++|++.+.+ ++++++|.|||+||++|+.+.|.++++++.+.+  ++.|+.+|++.+ ++. .++|.++||+++|++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            35678877655 688999999999999999999999999999976  799999999998 554 6899999999999988


Q ss_pred             CccCc-------eEecCCCC-HHHHHHHHHHhcCC
Q 018164          313 DKANP-------IKVSARSS-SKNIAAFIKEQLKE  339 (360)
Q Consensus       313 ~~~~~-------~~~~g~~~-~~~l~~~i~~~~~~  339 (360)
                      +.+..       .++.|..+ .+.|.++|++.+..
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            76520       13445554 89999999987754

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.63  E-value=7.7e-16  Score=117.72  Aligned_cols=103  Identities=23%  Similarity=0.406  Sum_probs=87.5

Q ss_pred             CCceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CCC-CCCCCCCc
Q 018164          229 NANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP-KLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~~-~~~i~~~P  304 (360)
                      .+.|..++.++|++.+.. ++++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++ .+ ++. .+++.++|
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~~P   93 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   93 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCeee
Confidence            456889999999998854 67899999999999999999999999999886   4899999998 44 443 57999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++++++|+..  .++.|.. .+.|.++|++..
T Consensus        94 t~~~~~~G~~~--~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           94 TFKILKENSVV--GEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEEETTEEE--EEEESSC-HHHHHHHHHHHT
T ss_pred             EEEEEeCCcEE--EEEcCCC-HHHHHHHHHHhh
Confidence            99999988764  3677876 899999998764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.63  E-value=5.3e-16  Score=117.35  Aligned_cols=100  Identities=20%  Similarity=0.447  Sum_probs=85.7

Q ss_pred             ceEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          231 NVQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       231 ~v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      .|..++. ++|.+.+.+ .+++++|.||++||++|+.+.|.++++++.+    ++.++.+|++.+ ++. .+++.++||+
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778887 889988754 6789999999999999999999999999877    589999999988 454 6899999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|++|+..  .++.| .+.+.|.++|++++
T Consensus        90 ~~~~~G~~~--~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           90 IAIKNGEKV--GDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEETTEEE--EEEES-SCHHHHHHHHHHHC
T ss_pred             EEEeCCcEE--EEEeC-CCHHHHHHHHHHhC
Confidence            999888664  46778 68999999998764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.62  E-value=1.3e-15  Score=116.86  Aligned_cols=106  Identities=15%  Similarity=0.164  Sum_probs=86.1

Q ss_pred             EEcCcccc----ccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe--CCCC-CC-CCCCCCCCcE
Q 018164          234 IVVGKTFD----DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID--ASAN-EH-PKLQVEEYPT  305 (360)
Q Consensus       234 ~l~~~~~~----~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id--~~~~-~~-~~~~i~~~Pt  305 (360)
                      .++..+|+    ......+++++|+||++||++|+.+.|.+.++++.+++  ++.++.+|  ++.+ ++ ..+++.++||
T Consensus         8 ~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~--~v~~~~v~~~~d~~~~~~~~~~v~~~Pt   85 (126)
T 2l57_A            8 QINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG--KFNIYYARLEEEKNIDLAYKYDANIVPT   85 (126)
T ss_dssp             CTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS--SCEEEEEETTSSHHHHHHHHTTCCSSSE
T ss_pred             CCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC--CeEEEEEeCCCCchHHHHHHcCCcceeE
Confidence            34445555    12235678999999999999999999999999999974  79999999  7766 44 3689999999


Q ss_pred             EEEEe-CCCccCceEecCCCCHHHHHHHHHHhcCCCCCC
Q 018164          306 LLFYP-AGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS  343 (360)
Q Consensus       306 i~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  343 (360)
                      +++|. +|+..  .++.|..+.+.|.++|++.++.....
T Consensus        86 ~~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~~~~~~~~  122 (126)
T 2l57_A           86 TVFLDKEGNKF--YVHQGLMRKNNIETILNSLGVKEGHH  122 (126)
T ss_dssp             EEEECTTCCEE--EEEESCCCHHHHHHHHHHHCCCCCCC
T ss_pred             EEEECCCCCEE--EEecCCCCHHHHHHHHHHHhcccccc
Confidence            99998 56553  47889999999999999998876543

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.62  E-value=1e-15  Score=112.97  Aligned_cols=99  Identities=21%  Similarity=0.491  Sum_probs=83.7

Q ss_pred             EEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEE
Q 018164          233 QIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF  308 (360)
Q Consensus       233 ~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~  308 (360)
                      +.++. ++|++.+.+ .+++++|.||++||++|+.+.|.+.++++.+.   ++.++.+|++.+ ++ ..+++.++||+++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45555 778887754 67899999999999999999999999999885   589999999988 45 4689999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+..  .++.| .+.+.|.+||++.+
T Consensus        79 ~~~g~~~--~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEV--DRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEE--EEEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEE--EEEeC-CCHHHHHHHHHhhC
Confidence            9988664  46778 68999999998763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.62  E-value=6.3e-16  Score=115.98  Aligned_cols=101  Identities=18%  Similarity=0.406  Sum_probs=87.8

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      +....++..+|++.+ ..+++++|+||++||++|+.+.|.++++++.+.   ++.++.+|++.+ .+ ..+++.++||++
T Consensus         9 ~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            9 MVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             eEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            456778889999987 578899999999999999999999999999885   599999999988 44 468999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+..  .++.|. +.+.|.+||++.+
T Consensus        85 ~~~~G~~~--~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYKNGSSV--DTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEETTEEE--EEEESC-CHHHHHHHHHTTC
T ss_pred             EEECCcEE--EEEeCC-CHHHHHHHHHHhh
Confidence            99988664  468898 9999999998764

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.62  E-value=1.4e-15  Score=128.72  Aligned_cols=103  Identities=24%  Similarity=0.395  Sum_probs=89.0

Q ss_pred             CceEEEcCccccccccccCccEEEEEeC--CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----CC-CCC-CCCC
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYT--PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EHP-KLQV  300 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~-~~~-~~~i  300 (360)
                      ..|..|+..+|++.+ ..+++++|.||+  |||+    +.|.|+++|..+.+.+++.|+.||++     .+ +++ .++|
T Consensus         5 ~~v~~Lt~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            457889999999976 667899999999  9999    99999999999976558999999954     35 454 6899


Q ss_pred             C--CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          301 E--EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       301 ~--~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +  ++||+++|++|....+.+|.|.++.+.|.+||++++
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9  999999999997223679999999999999999985

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.62  E-value=2.3e-16  Score=123.10  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCC--ChhhHHHHHHHHHHHHHhcCCCCEE--EEEEeCCCC-CCC-CCCCCCCc
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLV--IAKIDASAN-EHP-KLQVEEYP  304 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~--~~~id~~~~-~~~-~~~i~~~P  304 (360)
                      .+..++.++|++.+ .+++.++|+|+++|  |++|+.+.|.|+++++.+ +  ++.  |+.+|++.+ ++. +++|.++|
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~--~v~~~~~~Vd~d~~~~la~~~~V~~iP   93 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P--QFDWQVAVADLEQSEAIGDRFNVRRFP   93 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T--TSCCEEEEECHHHHHHHHHTTTCCSSS
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c--ccceeEEEEECCCCHHHHHhcCCCcCC
Confidence            47788899999987 45567888999887  999999999999999998 5  688  999999988 554 78999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      |+++|++|+.+  .++.|.++.+.|.+||++.++.+..
T Consensus        94 T~~~fk~G~~v--~~~~G~~~~~~l~~~i~~~l~~~~~  129 (142)
T 2es7_A           94 ATLVFTDGKLR--GALSGIHPWAELLTLMRSIVDTPAA  129 (142)
T ss_dssp             EEEEESCC------CEESCCCHHHHHHHHHHHHC----
T ss_pred             eEEEEeCCEEE--EEEeCCCCHHHHHHHHHHHhccccc
Confidence            99999888764  4789999999999999999876543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.62  E-value=1.6e-15  Score=115.91  Aligned_cols=103  Identities=20%  Similarity=0.396  Sum_probs=87.6

Q ss_pred             CCceEEE-cCccccccccc---cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          229 NANVQIV-VGKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      .+.|..+ +.++|++.+..   ++++++|+||++||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. .+++.+
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc
Confidence            4567778 55889888754   47899999999999999999999999999985   699999999988 554 689999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +||+++|++|+.+  .++.| .+.+.|.++|.+.+
T Consensus        92 ~Pt~~~~~~G~~~--~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 MPTFMFLKEGKIL--DKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSEEEEEETTEEE--EEEES-CCHHHHHHHHHHHC
T ss_pred             cCEEEEEECCEEE--EEEeC-CCHHHHHHHHHHhc
Confidence            9999999888664  36778 58999999998865

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.61  E-value=1.3e-15  Score=112.64  Aligned_cols=95  Identities=20%  Similarity=0.450  Sum_probs=81.7

Q ss_pred             Cccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCC
Q 018164          237 GKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       237 ~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~  313 (360)
                      .++|++.+.. ++++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+ ++ ..+++.++||+++|++|+
T Consensus         8 ~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~   84 (105)
T 3m9j_A            8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQ   84 (105)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST---TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETTE
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc---CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCe
Confidence            4667777643 57899999999999999999999999999986   489999999988 54 468999999999998887


Q ss_pred             ccCceEecCCCCHHHHHHHHHHhc
Q 018164          314 KANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       314 ~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ..  .++.|. +.+.|.++|++.+
T Consensus        85 ~~--~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           85 KV--GEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EE--EEEESS-CHHHHHHHHHHHC
T ss_pred             EE--EEEeCC-CHHHHHHHHHHhC
Confidence            64  478898 9999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.61  E-value=2.3e-14  Score=122.57  Aligned_cols=193  Identities=8%  Similarity=-0.014  Sum_probs=141.9

Q ss_pred             cCCHHHHHHHhhh-CCeEEEEEecCC--CC---ccHHHHHHHHhcCCC------ceEEEec---cHHHHHHcCCCCCCCC
Q 018164            3 TNTVNEAEEFLKK-YQTFVLGMFKKF--EG---SDYEEFVKTAAADNE------IQFVETS---NFEVAKVLYPDIKSTD   67 (360)
Q Consensus         3 i~s~~~~~~~~~~-~~~~vv~ff~~~--~~---~~~~~f~~~a~~~~~------~~F~~~~---~~~~~~~~~~~~~~~~   67 (360)
                      .++.++|+.+++. ..+++|.||.++  ++   .....+.++|+..+.      +.|+.+.   ++++|.+||++   +.
T Consensus        11 ~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~---~~   87 (243)
T 2hls_A           11 EDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVE---RV   87 (243)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCC---SS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCC---cC
Confidence            4556888888875 245556677666  54   356677888855454      8887754   67899999998   78


Q ss_pred             CEEEEEecCCCCccccCCCCChHHHHHHHhhcc---CCceeecCcccccccccC-CCceEEEEEEec-cchHHHHHHHHH
Q 018164           68 HFLGIVKSEPDRYTGYEETFIMDKILQFLNYNK---FPLVTKLTDINSASVHSS-PIKLQVYVFAKA-DDLKSLLEPLED  142 (360)
Q Consensus        68 p~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~---~p~v~~l~~~~~~~~~~~-~~~~~v~f~~~~-~~~~~~~~~~~~  142 (360)
                      |++.+| . +  ...|.|....+.+..|+....   .+. ..+++++++.+... +...++.||++| ++|+.+.+.|.+
T Consensus        88 Pt~~i~-~-g--~~~~~G~~~~~~l~~fv~~~l~~~~~~-~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~  162 (243)
T 2hls_A           88 PTVAFL-G-G--EVRWTGIPAGEEIRALVEVIMRLSEDE-SGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHM  162 (243)
T ss_dssp             SEEEET-T-T--TEEEESCCCTTHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHH
T ss_pred             CEEEEE-C-C--ceeEcCCCcHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence            999998 3 2  567877766778888876521   111 13455555544332 334577899999 999999999999


Q ss_pred             HHHhhc----CceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          143 IARNFK----GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       143 la~~~~----~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +|..+.    .++.++.+|++.++   .+++.|||.++ |+++ +  ++. .  .+.|..+.+.|.+|+...+..
T Consensus       163 la~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~V~~v-Pt~~-i--~G~-~--~~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          163 FAYEAWKQGNPVILSEAVEAYENP---DIADKYGVMSV-PSIA-I--NGY-L--VFVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             HHHHHHHTTCCCEEEEEEETTTCH---HHHHHTTCCSS-SEEE-E--TTE-E--EEESCCCHHHHHHHHHHHHTT
T ss_pred             HHHHcccccCCcEEEEEEECccCH---HHHHHcCCeee-CeEE-E--CCE-E--EEeCCCCHHHHHHHHHHHhhc
Confidence            999993    46999999999875   88999999999 9984 3  222 2  257899999999999998854

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5.8e-17  Score=126.33  Aligned_cols=104  Identities=15%  Similarity=0.365  Sum_probs=87.3

Q ss_pred             CceEEEcCccccccccccC-ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCC-----
Q 018164          230 ANVQIVVGKTFDDLVLNSH-KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE-----  301 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~-----  301 (360)
                      +.|..++.++|++.+.... ++++|+||++||++|+.+.|.|+++++.+.+ .++.|+.+|++.+ ++ .++++.     
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            4588999999999885544 3899999999999999999999999999974 2699999999988 45 368888     


Q ss_pred             -CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          302 -EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       302 -~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                       ++||+++|++|+.+  .++.|..+.+.|.+||.+.
T Consensus        86 ~~~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           86 KQLPTLILFQGGKEA--MRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SCSSEEEEESSSSEE--EEESCBCSSSCBCCCCCCH
T ss_pred             CCCCEEEEEECCEEE--EEecCcCchHHHHHHHhcc
Confidence             99999999888764  4788888888777777544

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.40  E-value=5.6e-17  Score=120.19  Aligned_cols=101  Identities=27%  Similarity=0.568  Sum_probs=88.5

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~  309 (360)
                      |..++.++|.+.+..++++++|+||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG--KVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            567888999988777889999999999999999999999999999876  799999999987 45 46899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      ++|+..  .++.|..+.+.|.+||++.
T Consensus        81 ~~g~~~--~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNGQVV--DRLVGAQPKEALKERIDKH  105 (106)
Confidence            877664  3788999999999999865

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.60  E-value=7.1e-16  Score=115.30  Aligned_cols=101  Identities=20%  Similarity=0.314  Sum_probs=82.9

Q ss_pred             EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEe
Q 018164          233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYP  310 (360)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~  310 (360)
                      ..++.++| +.+ .++++++|+||++||++|+.+.|.+++++..+.   ++.++.+|++.+ ++. .+++.++||+++|+
T Consensus         6 ~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            6 DITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             BCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             ecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            34567888 544 457899999999999999999999999998874   589999999887 554 68999999999998


Q ss_pred             CCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          311 AGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       311 ~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +|+.+  .++.|..+.+.|.++|.+....+
T Consensus        81 ~G~~v--~~~~G~~~~~~l~~~~~~~~~~~  108 (110)
T 2l6c_A           81 DGKVA--KVFSGIMNPRELQALYASIHHHH  108 (110)
T ss_dssp             SSSEE--EEEESCCCHHHHHHHHHTC----
T ss_pred             CCEEE--EEEcCCCCHHHHHHHHHHHhhhc
Confidence            88774  47889999999999999876543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.60  E-value=3.2e-15  Score=118.68  Aligned_cols=107  Identities=19%  Similarity=0.406  Sum_probs=88.7

Q ss_pred             CCceEEEcC-cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCc
Q 018164          229 NANVQIVVG-KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~-~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~P  304 (360)
                      .+.+..++. ++|++.+... +++++|+||++||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. .++|.++|
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~P   87 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSVP   87 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCCC
Confidence            345777874 8898877433 7899999999999999999999999999973   699999999998 454 68999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      |+++|.+|+.+  .++.| .+.+.|.+||.+.+....
T Consensus        88 t~~~~~~G~~~--~~~~G-~~~~~l~~~i~~~l~~~~  121 (153)
T 2wz9_A           88 TFLFFKNSQKI--DRLDG-AHAPELTKKVQRHASSGS  121 (153)
T ss_dssp             EEEEEETTEEE--EEEES-SCHHHHHHHHHHHSCTTS
T ss_pred             EEEEEECCEEE--EEEeC-CCHHHHHHHHHHHhcccc
Confidence            99999977553  36677 478899999999987654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.59  E-value=9.7e-16  Score=115.30  Aligned_cols=98  Identities=17%  Similarity=0.437  Sum_probs=81.2

Q ss_pred             ceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          231 NVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       231 ~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      .+..++. +.|++. ..++++++|.||++||++|+.+.|.++++++.+.+   +.|+.+|++.+ ++. .+++.++||++
T Consensus        13 ~~~~~~~~~~~~~~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           13 SITKLTNLTEFRNL-IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD---VRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             GSCBCCSHHHHHHH-HHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT---SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             heeecCCHHHHHHH-HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            3455555 445554 46788999999999999999999999999999864   89999999988 554 68999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      +|++|+..  .++.|.. .+.|.++|++
T Consensus        89 ~~~~G~~~--~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDGQLI--GKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETTEEE--EEEESSC-HHHHHHHHHT
T ss_pred             EEeCCeEE--EEEeCCC-HHHHHHHHHh
Confidence            99888664  4788988 9999999875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.59  E-value=8.8e-14  Score=122.55  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=147.3

Q ss_pred             CHHHHHHHhh-hCCeEEEEEecCCCC---ccHHHHHHHH-hcCCCceEEEe-----ccHHHHHHcCCCCCCCCCEEEEEe
Q 018164            5 TVNEAEEFLK-KYQTFVLGMFKKFEG---SDYEEFVKTA-AADNEIQFVET-----SNFEVAKVLYPDIKSTDHFLGIVK   74 (360)
Q Consensus         5 s~~~~~~~~~-~~~~~vv~ff~~~~~---~~~~~f~~~a-~~~~~~~F~~~-----~~~~~~~~~~~~~~~~~p~i~~~~   74 (360)
                      |.+++++++. .+.+++|.|+.++|+   .+...|.++| .+.+.+.|+.+     .+.++|+++++.   +.|++++|+
T Consensus        23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~---~~Pt~~~~~   99 (298)
T 3ed3_A           23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVN---GFPTLMVFR   99 (298)
T ss_dssp             CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCC---BSSEEEEEE
T ss_pred             CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCC---ccceEEEEE
Confidence            6788888884 577899999999986   6788999999 55566888764     357899999998   899999999


Q ss_pred             cCC----------------CCccccCCCCChHHHHHHHhhccCCceeecCc-ccccccccCCCceEEEEEEeccchHHHH
Q 018164           75 SEP----------------DRYTGYEETFIMDKILQFLNYNKFPLVTKLTD-INSASVHSSPIKLQVYVFAKADDLKSLL  137 (360)
Q Consensus        75 ~~~----------------~~~~~y~g~~~~~~l~~fi~~~~~p~v~~l~~-~~~~~~~~~~~~~~v~f~~~~~~~~~~~  137 (360)
                      .+.                .....|.|..+.+.|.+|+.....|.+..++. ++++.+........+++|....   ...
T Consensus       100 ~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~~---~~~  176 (298)
T 3ed3_A          100 PPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQD---KIS  176 (298)
T ss_dssp             CCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESSS---SCC
T ss_pred             CCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCCC---cch
Confidence            753                12568999999999999999999999988854 5677777654344455564442   234


Q ss_pred             HHHHHHHHhhcCceEEEEEeCCCcccchhHH--hhcC-----C-------------CCCCCceEEEEeCCCcccccCCC-
Q 018164          138 EPLEDIARNFKGKIMFTAVDIADEDLAKPFL--TLFG-----L-------------EESKNTVVTAFDNKAISKFLLES-  196 (360)
Q Consensus       138 ~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~--~~~g-----i-------------~~~~p~~~~~~~~~~~~~y~~~~-  196 (360)
                      +.|+.+|..+.+.+.|+.++..+..   .+.  +.++     |             ... |++ +++.......+.|.| 
T Consensus       177 ~~f~~~A~~~~~~~~F~~v~~~~~a---~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~-P~l-v~~~~~~~~~~~y~g~  251 (298)
T 3ed3_A          177 PVYKSIALDWLGKFDFYSISNKKLK---QLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-SKL-VVFDADKDKFWEYEGN  251 (298)
T ss_dssp             HHHHHHHHHTBTTEEEEEEEGGGCC---CCCTTCTTSTTCHHHHHHHHHHHHHHTTCSS-CEE-EEEETTTTEEEECCCS
T ss_pred             HHHHHHHHHhhcCcEEEEEcchHhh---hhhhhhhhcccCcchhhhhhcccccccccCC-CeE-EEEcCCCCceEEeccc
Confidence            6889999999999999999865332   222  2233     2             233 666 677666666777775 


Q ss_pred             CCCHHHHHHHHHHHhc
Q 018164          197 DLTPSNIEEFCSRLLH  212 (360)
Q Consensus       197 ~~~~~~i~~fi~~~~~  212 (360)
                      ..+.+.|.+||.+-.+
T Consensus       252 ~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          252 SINKNDISKFLRDTFS  267 (298)
T ss_dssp             SCCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhhcC
Confidence            6899999999997543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.59  E-value=1.5e-15  Score=114.95  Aligned_cols=104  Identities=15%  Similarity=0.268  Sum_probs=83.7

Q ss_pred             ceEEEc--CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEE
Q 018164          231 NVQIVV--GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL  306 (360)
Q Consensus       231 ~v~~l~--~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti  306 (360)
                      .|..++  ..+|.+.+..++++++|.||++||++|+.+.|.++++++.+ +  ++.|+.+|++.+ ++ ..+++.++||+
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K--DVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C--CeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            366674  46788666667899999999999999999999999999998 3  799999999988 55 47899999999


Q ss_pred             EEEeC----CCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          307 LFYPA----GDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~----g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++|++    |..+  .++.|..+ ++|.+.|.++..++
T Consensus        81 ~~~~~~~~~G~~~--~~~~G~~~-~~l~~~~~~~~~~~  115 (118)
T 2f51_A           81 FFVKKEGNEIKTL--DQFVGADV-SRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEETTEEEEE--EEEESCCH-HHHHHHHHHHC---
T ss_pred             EEEeCCCCcceEE--EeecCCCH-HHHHHHHHHhhhcc
Confidence            99987    5443  36778765 56999999887654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.59  E-value=1.2e-15  Score=116.04  Aligned_cols=103  Identities=20%  Similarity=0.461  Sum_probs=87.3

Q ss_pred             CceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEE
Q 018164          230 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTL  306 (360)
Q Consensus       230 ~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti  306 (360)
                      ..+..++. ++|++.+ ..+++++|+||++||++|+.+.|.++++++.+.+. ++.++.+|++.+ ++. .+++.++||+
T Consensus        15 ~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~   92 (121)
T 2j23_A           15 GSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF   92 (121)
T ss_dssp             CCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             cceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEE
Confidence            45666666 7898887 77889999999999999999999999999888651 399999999988 554 6799999999


Q ss_pred             EEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          307 LFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       307 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|++|+..  .++.|. +.+.|.+||++.+
T Consensus        93 ~~~~~G~~~--~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           93 VFFKNGQKI--DTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEETTEEE--EEEESS-CHHHHHHHHHHHT
T ss_pred             EEEECCeEE--eeEcCC-CHHHHHHHHHHhh
Confidence            999988664  467888 9999999999865

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.59  E-value=4.3e-16  Score=121.01  Aligned_cols=104  Identities=23%  Similarity=0.301  Sum_probs=85.9

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCC-CC-CC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---------SAN-EH-PK  297 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~---------~~~-~~-~~  297 (360)
                      .+.+..++.++|++.+..   +++|+||++||++|+.+.|.++++++.+.    +.|+.+|+         +.+ ++ ..
T Consensus        15 ~~~v~~l~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            456888999999998743   99999999999999999999999998774    78899998         444 33 35


Q ss_pred             CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ++|.++||+++|++|+.+  .++.|..+.+.+..+|.+.++...
T Consensus        88 ~~v~~~Pt~~~~~~G~~v--~~~~G~~~~~~~~~~i~~~~~~~~  129 (135)
T 3emx_A           88 AGVEGTPTLVFYKEGRIV--DKLVGATPWSLKVEKAREIYGGEG  129 (135)
T ss_dssp             HTCCSSSEEEEEETTEEE--EEEESCCCHHHHHHHHHHHC----
T ss_pred             cCCceeCeEEEEcCCEEE--EEEeCCCCHHHHHHHHHHHhCCCc
Confidence            799999999999988764  478999999999999999987543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.58  E-value=3.6e-15  Score=116.39  Aligned_cols=106  Identities=18%  Similarity=0.339  Sum_probs=89.2

Q ss_pred             CCceEEEc-Ccccccccc---ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCC
Q 018164          229 NANVQIVV-GKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~-~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~  302 (360)
                      .+.+..++ .++|++.+.   ..+++++|.||++||++|+.+.|.++++++.+.   ++.|+.+|++.+ ++ ..+++.+
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKA   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCc
Confidence            45566775 588998874   347899999999999999999999999999984   589999999988 55 4689999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +||++++++|+..  .++.|. +.+.|.++|.+.+...
T Consensus       100 ~Pt~~~~~~G~~~--~~~~G~-~~~~l~~~l~~~~~~~  134 (139)
T 3d22_A          100 TPTFFFLRDGQQV--DKLVGA-NKPELHKKITAILDSL  134 (139)
T ss_dssp             ESEEEEEETTEEE--EEEESC-CHHHHHHHHHHHHHTS
T ss_pred             ccEEEEEcCCeEE--EEEeCC-CHHHHHHHHHHHhccC
Confidence            9999999888664  467788 8999999999988654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.58  E-value=3.8e-15  Score=112.64  Aligned_cols=105  Identities=24%  Similarity=0.414  Sum_probs=87.2

Q ss_pred             CceEEE-cCccccccccc---cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCC
Q 018164          230 ANVQIV-VGKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEY  303 (360)
Q Consensus       230 ~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~  303 (360)
                      +.+..+ +.++|++.+..   .+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++.+ ++ ..+++.++
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~   82 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM   82 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSB
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCcC
Confidence            456667 45889888754   47899999999999999999999999999986   589999999988 44 46899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ||+++|++|+..  .++.| .+.+.|.++|.+.++..
T Consensus        83 Pt~~~~~~g~~~--~~~~g-~~~~~l~~~l~~~~~~~  116 (118)
T 2vm1_A           83 PTFLFIKDGEKV--DSVVG-GRKDDIHTKIVALMGSA  116 (118)
T ss_dssp             SEEEEEETTEEE--EEEES-CCHHHHHHHHHHHHC--
T ss_pred             cEEEEEeCCeEE--EEecC-CCHHHHHHHHHHHhccc
Confidence            999999888764  36778 58999999999987643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.57  E-value=2.9e-15  Score=112.35  Aligned_cols=103  Identities=20%  Similarity=0.407  Sum_probs=86.4

Q ss_pred             CceEEE-cCccccccccc---cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCC
Q 018164          230 ANVQIV-VGKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEY  303 (360)
Q Consensus       230 ~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~  303 (360)
                      +.+..+ +.++|++.+..   ++++++|+||++||++|+.+.+.++++++.+.   ++.|+.+|++.+ ++ ..+++.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            456777 55889888754   47899999999999999999999999999885   699999999988 44 36799999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ||+++|++|+..  .++.| .+.+.|.++|.+.++
T Consensus        81 Pt~~~~~~G~~~--~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           81 PTFIFLKDGKLV--DKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TEEEEEETTEEE--EEEEC-CCTTHHHHHHHHHHH
T ss_pred             cEEEEEeCCEEE--EEEec-CCHHHHHHHHHHhhc
Confidence            999999888664  36778 688999999998764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.57  E-value=2.5e-15  Score=116.27  Aligned_cols=107  Identities=12%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             CCceEEEcC-cccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCc
Q 018164          229 NANVQIVVG-KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~-~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~P  304 (360)
                      .+.+..++. ++|.+.+... +++++|.||++||++|+.+.|.|+++++.+    ++.|+.+|++.+ ++. .+++.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            456777775 7888877443 479999999999999999999999988766    489999999988 554 68999999


Q ss_pred             EEEEEe--CCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          305 TLLFYP--AGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       305 ti~~~~--~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      |+++|+  +|+.....++.|. +.+.|.++|.+.+..+
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~~  131 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLEK  131 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEEC
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHhh
Confidence            999996  7762113467787 8999999999987643

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.57  E-value=6.8e-16  Score=141.88  Aligned_cols=106  Identities=18%  Similarity=0.264  Sum_probs=86.5

Q ss_pred             CCceEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC------CEEEEEEeCCCC-CCC-CCC
Q 018164          229 NANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD------NLVIAKIDASAN-EHP-KLQ  299 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~------~~~~~~id~~~~-~~~-~~~  299 (360)
                      .+.|..++.++|++.+.. ..++++|.|||+||++|+.+.|.|+++++.+....      .+.|+.||++.+ ++. .++
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            567999999999998854 34799999999999999999999999999997432      499999999998 554 789


Q ss_pred             CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       300 i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      |.++||+++|.+|+...+.+|.|.++.+.| .||.+
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~k  136 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFENS  136 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSCT
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHHH
Confidence            999999999977665456688887666554 44433

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.55  E-value=1.8e-13  Score=129.03  Aligned_cols=220  Identities=11%  Similarity=0.080  Sum_probs=154.4

Q ss_pred             CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..|.+++.++|...+ ..+.+++|.||++| ++|+.+.+.|.++++++++   .+.|+.|||+... +..+|+.|||.++
T Consensus        12 ~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~-~~~l~~~~~V~~~   90 (519)
T 3t58_A           12 DPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET-NSAVCREFNIAGF   90 (519)
T ss_dssp             SSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG-GHHHHHHTTCCSB
T ss_pred             CCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc-cHHHHHHcCCccc
Confidence            357889999998754 55678899999999 9999999999999999997   7999999997421 2489999999999


Q ss_pred             CCceEEEEeCCC-c-ccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCcccccccccc-CccEEE
Q 018164          177 KNTVVTAFDNKA-I-SKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNS-HKDVLL  253 (360)
Q Consensus       177 ~p~~~~~~~~~~-~-~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~~v  253 (360)
                       |+++++..+.. + ....+.|..+.+.|.+|+.+++....      +..|.. ..++..++..++++++... .+++++
T Consensus        91 -PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~------~~~P~~-~p~l~~it~~~l~~~l~~~~~~~val  162 (519)
T 3t58_A           91 -PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR------DTWPPA-CPPLEPAKLNDIDGFFTRNKADYLAL  162 (519)
T ss_dssp             -SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC------SCCCTT-CCCCSBCCHHHHTTGGGSCCCSEEEE
T ss_pred             -CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc------ccCCCC-CCccCcCCHHHHHHHhccCCCCeEEE
Confidence             99964443221 1 12223567999999999999986432      112211 1234445667777776443 456777


Q ss_pred             EEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCccCceEecC-CCCHHHHHH
Q 018164          254 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAA  331 (360)
Q Consensus       254 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~  331 (360)
                      .|....       .....+++..+....++.+..++.+...+ .+|+|+.+|+++++.+|++..  ++.. .-+...+..
T Consensus       163 lF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk~~--~~~v~~~~r~~~~~  233 (519)
T 3t58_A          163 VFERED-------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVS--RVPVLVESRSFYTS  233 (519)
T ss_dssp             EEECTT-------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSCEE--ECCCSSCSHHHHHH
T ss_pred             EecCCc-------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCCcee--ecccccccHHHHHH
Confidence            777654       22567777777765678888887654444 578999999999998876642  3332 223355666


Q ss_pred             HHHHhcCC
Q 018164          332 FIKEQLKE  339 (360)
Q Consensus       332 ~i~~~~~~  339 (360)
                      +|.+..+.
T Consensus       234 ~l~~l~~~  241 (519)
T 3t58_A          234 YLRGLPGL  241 (519)
T ss_dssp             HHTTSTTC
T ss_pred             HHHHccCC
Confidence            77664443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.55  E-value=1.9e-14  Score=135.65  Aligned_cols=113  Identities=18%  Similarity=0.304  Sum_probs=95.5

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCC--C-CCC-CCCCCCC
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASA--N-EHP-KLQVEEY  303 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~--~-~~~-~~~i~~~  303 (360)
                      .+.|..+++++|+..+.+++++++|.|||+||++|+.+.|.|+++++.+.+ ...+.|+.+||+.  + ++. .++|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            457999999999999888889999999999999999999999999999975 2369999999975  3 443 6899999


Q ss_pred             cEEEEEeCCCcc--CceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          304 PTLLFYPAGDKA--NPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       304 Pti~~~~~g~~~--~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ||+++|++|.+.  ....+.|.++.+.|.++|.+.+....
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            999999975442  12456688999999999999987543

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.55  E-value=2e-15  Score=114.32  Aligned_cols=97  Identities=8%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C------C-CCCCCCC
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E------H-PKLQVEE  302 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~------~-~~~~i~~  302 (360)
                      .+..++.++|.+.+ .++++++|+||++||++|+.+.|.++++++.+..  .+.++  |++.. +      + ..++|.+
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~--~v~~~--~~~~~~~~~~~~~~~~~~~i~~   87 (118)
T 1zma_A           13 DLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFI--NSEEPSQLNDLQAFRSRYGIPT   87 (118)
T ss_dssp             TSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEE--ETTCGGGHHHHHHHHHHHTCCS
T ss_pred             hhhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC--eEEEE--ECCCcCcHHHHHHHHHHcCCCC
Confidence            36778888898876 5578999999999999999999999999998864  45554  54443 1      2 2569999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      +||+++|++|+.+  .++.|.++.+.|.+||+
T Consensus        88 ~Pt~~~~~~G~~~--~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           88 VPGFVHITDGQIN--VRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             SCEEEEEETTEEE--EECCTTCCHHHHHHHHT
T ss_pred             CCeEEEEECCEEE--EEecCCCCHHHHHHHhh
Confidence            9999999988764  47889999999999985

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.6e-14  Score=111.31  Aligned_cols=106  Identities=23%  Similarity=0.431  Sum_probs=85.1

Q ss_pred             EEcCcccccccc---ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCC--C-CC-CCCCCCCC
Q 018164          234 IVVGKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEY  303 (360)
Q Consensus       234 ~l~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~--~-~~-~~~~i~~~  303 (360)
                      .++..+|.+.+.   ..+++++|.||++||++|+.+.|.+   ..+++.++.  ++.++.+|++.  + .+ ..+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~   87 (130)
T 2kuc_A           10 AFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR--HFVNLKMDMEKGEGVELRKKYGVHAY   87 (130)
T ss_dssp             CCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH--HSEEEEECSSSTTHHHHHHHTTCCSS
T ss_pred             CcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc--CeEEEEEecCCcchHHHHHHcCCCCC
Confidence            346678887763   3578999999999999999999999   778777765  68899999984  2 33 36899999


Q ss_pred             cEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCCCCCC
Q 018164          304 PTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS  343 (360)
Q Consensus       304 Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  343 (360)
                      |+++++ ++|+.+  .++.|..+.+.|.++|++.+.+....
T Consensus        88 Pt~~~~d~~G~~~--~~~~G~~~~~~l~~~l~~~~~~~~~~  126 (130)
T 2kuc_A           88 PTLLFINSSGEVV--YRLVGAEDAPELLKKVKLGVESEGHH  126 (130)
T ss_dssp             CEEEEECTTSCEE--EEEESCCCHHHHHHHHHHHHSCCC--
T ss_pred             CEEEEECCCCcEE--EEecCCCCHHHHHHHHHHHHHhcccc
Confidence            999999 566553  47889999999999999998876543

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.51  E-value=8.6e-14  Score=98.52  Aligned_cols=81  Identities=19%  Similarity=0.374  Sum_probs=70.8

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      .++++.||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++||+++  +|+.    ++.|..+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~----~~~G~~~~   74 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV----EFIGAPTK   74 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE----ECCSSSSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE----eeecCCCH
Confidence            4679999999999999999999999999975  799999999988 55 4689999999999  5532    78899999


Q ss_pred             HHHHHHHHHhc
Q 018164          327 KNIAAFIKEQL  337 (360)
Q Consensus       327 ~~l~~~i~~~~  337 (360)
                      +.|.++|++.+
T Consensus        75 ~~l~~~l~~~l   85 (85)
T 1fo5_A           75 EALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.49  E-value=9.7e-14  Score=107.29  Aligned_cols=103  Identities=17%  Similarity=0.270  Sum_probs=88.5

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC--CcEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE--YPTL  306 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~--~Pti  306 (360)
                      .|..++..+|.+. ...+.+++|.||++ |++|+.+.|.++++|+.+++  ++.|+++|++.+ .+. .+++++  .||+
T Consensus         7 lv~~~t~~~f~~~-~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g--k~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            7 LIGEIGPETYSDY-MSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHH-HHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChHHHHHH-hcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC--eEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            3678889999987 46788999999999 89999999999999999987  799999999988 454 689999  9999


Q ss_pred             EEEeC--CCccCceEec--CCCCHHHHHHHHHHhcCCC
Q 018164          307 LFYPA--GDKANPIKVS--ARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       307 ~~~~~--g~~~~~~~~~--g~~~~~~l~~~i~~~~~~~  340 (360)
                      ++|+.  |.+   +++.  |..+.+.|.+||++.+...
T Consensus        83 ~i~~~~~g~~---~~~~~~g~~~~~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           83 AIQEVAKNQK---FPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEECTTTCCB---CCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEecCcCcc---cCCCCccccCHHHHHHHHHHHHcCC
Confidence            99986  444   2444  9999999999999988644

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.48  E-value=9.7e-14  Score=98.24  Aligned_cols=80  Identities=16%  Similarity=0.309  Sum_probs=70.3

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHH
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSK  327 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~  327 (360)
                      ..+|.||++||++|+.+.|.++++++.+.+  ++.++.+|++.+ ++ ..+++.++||+++  +|+.    ++.|..+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~----~~~G~~~~~   74 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV----RFVGAPSRE   74 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE----EEECSSCCH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE----EEccCCCHH
Confidence            368999999999999999999999999986  799999999988 45 4789999999998  5543    688999999


Q ss_pred             HHHHHHHHhc
Q 018164          328 NIAAFIKEQL  337 (360)
Q Consensus       328 ~l~~~i~~~~  337 (360)
                      .|.++|++.+
T Consensus        75 ~l~~~l~~~l   84 (85)
T 1nho_A           75 ELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.47  E-value=1.7e-12  Score=111.77  Aligned_cols=211  Identities=13%  Similarity=0.148  Sum_probs=150.8

Q ss_pred             ccCCceeecC-cccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164           99 NKFPLVTKLT-DINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus        99 ~~~p~v~~l~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      .+-|.+.+++ .+.+..+......++|.||.++  +......|.++|..+++.+.|+.+..      ..+++.++++.  
T Consensus         3 ~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~--~~~~~~~f~~~A~~lr~~~~F~~~~~------~~v~~~~~~~~--   72 (252)
T 2h8l_A            3 LGSPASVPLRTEEEFKKFISDKDASIVGFFDDS--FSEAHSEFLKAASNLRDNYRFAHTNV------ESLVNEYDDNG--   72 (252)
T ss_dssp             ---CCEEECCSHHHHHHHHTSSSCEEEEEESCT--TSHHHHHHHHHHHHTTTTSCEEEECC------HHHHHHHCSSS--
T ss_pred             cCCCCceeecCHHHHHHHhhcCCeEEEEEECCC--CChHHHHHHHHHHhcccCcEEEEECh------HHHHHHhCCCC--
Confidence            3568888885 4556667776667788888766  55566789999999999999998732      27889999983  


Q ss_pred             CceEEEEeC----C-CcccccC-CCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccE
Q 018164          178 NTVVTAFDN----K-AISKFLL-ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV  251 (360)
Q Consensus       178 p~~~~~~~~----~-~~~~y~~-~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~  251 (360)
                      |+++++.+.    . ......| .|.++.+.|.+||....-                 ..|..++..|+..+   ...++
T Consensus        73 p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~---~~~~~  132 (252)
T 2h8l_A           73 EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF-----------------GICPHMTEDNKDLI---QGKDL  132 (252)
T ss_dssp             EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS-----------------CSSCEECTTTHHHH---SSSSE
T ss_pred             CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhccc-----------------CCeeecccccHhhh---cCCCe
Confidence            777544432    1 1334567 788999999999999652                 24788999998885   24567


Q ss_pred             EEEEeCCCChh----hHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCC-CC-CCCCC----CCCcEEEEEeCCCccCceEe
Q 018164          252 LLEVYTPWCVT----CETTSKQIEKLAKHFKG-LDNLVIAKIDASAN-EH-PKLQV----EEYPTLLFYPAGDKANPIKV  320 (360)
Q Consensus       252 ~v~f~~~~c~~----c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~-~~-~~~~i----~~~Pti~~~~~g~~~~~~~~  320 (360)
                      +|.|+.+.+..    ...+...+.++|+.+++ ...+.|+++|++.+ .+ ..+++    ..+|+++++...+.  .+.+
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~--ky~~  210 (252)
T 2h8l_A          133 LIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE--KFVM  210 (252)
T ss_dssp             EEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSC--EEEC
T ss_pred             EEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCc--EecC
Confidence            77777554321    22477888999999986 12499999999877 23 34577    46999999964322  2456


Q ss_pred             cCCCCHHH--HHHHHHHhcCCCC
Q 018164          321 SARSSSKN--IAAFIKEQLKEKD  341 (360)
Q Consensus       321 ~g~~~~~~--l~~~i~~~~~~~~  341 (360)
                      .+..+.++  |.+|+++.+....
T Consensus       211 ~~~~t~~~~~i~~F~~~~~~Gkl  233 (252)
T 2h8l_A          211 QEEFSRDGKALERFLQDYFDGNL  233 (252)
T ss_dssp             CSCCCTTSHHHHHHHHHHHHTCS
T ss_pred             CcccCcchHHHHHHHHHHHCCCc
Confidence            67888888  9999999886554

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.46  E-value=3.4e-14  Score=105.36  Aligned_cols=87  Identities=10%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC---CCEEEEEEeCCCC---CCC-CCCCCCCcEEEEEeCCCccCceE
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL---DNLVIAKIDASAN---EHP-KLQVEEYPTLLFYPAGDKANPIK  319 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~---~~~-~~~i~~~Pti~~~~~g~~~~~~~  319 (360)
                      +.+.+||+|||+||++|+.+.+.+.   ..+...   ..+.+.++|++.+   ++. .++|.+.||+++|++|+.+  -+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~---~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev--~R   91 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIA---PQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVES--GR   91 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTT---TTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEE--EE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHH---hhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEE--ee
Confidence            4568999999999999999986433   333221   1267888999887   343 5799999999999988775  48


Q ss_pred             ecCCCCHHHHHHHHHHhcC
Q 018164          320 VSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       320 ~~g~~~~~~l~~~i~~~~~  338 (360)
                      +.|....+.+.+||++.++
T Consensus        92 i~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           92 LEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EECCCCHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHh
Confidence            8999999999999998765

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.45  E-value=9.3e-14  Score=107.41  Aligned_cols=88  Identities=22%  Similarity=0.386  Sum_probs=74.0

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHH--HHHHHhcCCCCEEEEEEeC---CCC-CC-CCCCC---CCCcEEEEE-eCCCc
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIE--KLAKHFKGLDNLVIAKIDA---SAN-EH-PKLQV---EEYPTLLFY-PAGDK  314 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~--~la~~~~~~~~~~~~~id~---~~~-~~-~~~~i---~~~Pti~~~-~~g~~  314 (360)
                      ..+++++|+||++||++|+.+.|.|.  +++..+++  ++.++.+|+   +.+ ++ ..+++   .++||+++| ++|+.
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~  104 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV  104 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCE
Confidence            45889999999999999999999999  99999875  799999999   555 34 36899   999999999 66665


Q ss_pred             cCceEecC-------CCCHHHHHHHHHHhc
Q 018164          315 ANPIKVSA-------RSSSKNIAAFIKEQL  337 (360)
Q Consensus       315 ~~~~~~~g-------~~~~~~l~~~i~~~~  337 (360)
                      +  .++.|       ..+.+.+.+||++..
T Consensus       105 ~--~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          105 R--YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             E--EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             E--EEecCCcccccccCCHHHHHHHHHHhc
Confidence            3  35666       679999999998753

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.45  E-value=6e-15  Score=113.59  Aligned_cols=107  Identities=25%  Similarity=0.408  Sum_probs=88.3

Q ss_pred             CCceEEEc-Cccccccccc---cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          229 NANVQIVV-GKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l~-~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      .+.+..++ .++|++.+..   ++++++|+||++||++|+.+.|.|.+++..+.   ++.|+.+|++.+ ++. .+++.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            34566664 5788888754   47899999999999999999999999999985   589999999987 554 679999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +||+++|++|+..  .++.| .+.+.|.++|.+.++...
T Consensus        90 ~Pt~~~~~~g~~~--~~~~g-~~~~~l~~~l~~~~~~~~  125 (130)
T 1wmj_A           90 MPTFLFIKDGAEA--DKVVG-ARKDDLQNTIVKHVGATA  125 (130)
T ss_dssp             SCCCCBCTTTTCC--BCCCT-TCTTTHHHHHHHHTSSSC
T ss_pred             cceEEEEeCCeEE--EEEeC-CCHHHHHHHHHHHHhccC
Confidence            9999999888664  35677 588999999999887554

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.44  E-value=8e-14  Score=106.24  Aligned_cols=99  Identities=20%  Similarity=0.315  Sum_probs=79.3

Q ss_pred             eEEEcCccccccccc-cCccEEEEEeCC-------CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC-------CCC-CC
Q 018164          232 VQIVVGKTFDDLVLN-SHKDVLLEVYTP-------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA-------SAN-EH  295 (360)
Q Consensus       232 v~~l~~~~~~~~~~~-~~~~~~v~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~-------~~~-~~  295 (360)
                      +...+.++|.+.+.. .+++++|.||++       ||++|+.+.|.+.++++.+.+  ++.|+.+|+       +.+ .+
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEEEEECCCchhhhchhHHH
Confidence            556667889888755 588999999999       999999999999999998876  799999999       454 44


Q ss_pred             C-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          296 P-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       296 ~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      . .++|.++||+++|.++...  ..+. ..+.+.|.+||.+
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~~--~g~~-~~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQKL--VESE-CLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE--EGGG-GGCHHHHHHHHHC
T ss_pred             HHHCCCCeeCEEEEEcCCceE--eccc-cCCHHHHHHHHhc
Confidence            3 5799999999999875442  2233 3578889998874

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.43  E-value=1e-12  Score=100.61  Aligned_cols=106  Identities=11%  Similarity=0.015  Sum_probs=88.8

Q ss_pred             CCceeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-----CceEEEEEeCCCcccchhHHhhcCC
Q 018164          101 FPLVTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-----GKIMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-----~~i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      .+.|..++.++|..... .+.+++|.||++| ++|+.+.+.|.++|+.+.     +++.|+.+||+...   .+|+.|+|
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v   90 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP---DVIERMRV   90 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH---HHHHHTTC
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH---hHHHhcCC
Confidence            45688999999998764 5778999999999 999999999999998764     56999999999875   99999999


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      .++ |+++++.+++....+.+.|.++.+.|.+||++.
T Consensus        91 ~~~-Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           91 SGF-PTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CSS-SEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             ccC-CEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999 999655444433335678999999999999873

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.42  E-value=9.3e-14  Score=107.58  Aligned_cols=99  Identities=22%  Similarity=0.499  Sum_probs=78.3

Q ss_pred             Cccccccccc-cCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCC-----CC-CCCCCCCCcEE
Q 018164          237 GKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-----EH-PKLQVEEYPTL  306 (360)
Q Consensus       237 ~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~-----~~-~~~~i~~~Pti  306 (360)
                      .+++...+.+ .+++++|.||++||++|+.+.+.+   .++++.+.   ++.++.+|++.+     .+ ..+++.++||+
T Consensus        19 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           19 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKHLNVLGLPTI   95 (134)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence            3556666533 378999999999999999999999   89998886   489999999653     22 36799999999


Q ss_pred             EEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          307 LFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       307 ~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++| ++|+.+...++.|..+.+.|.++|++.-.
T Consensus        96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            999 66655312478999999999999987543

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.41  E-value=1.8e-13  Score=110.74  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=77.8

Q ss_pred             EcCcccccccc---ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCC-C------------
Q 018164          235 VVGKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE-H------------  295 (360)
Q Consensus       235 l~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~-~------------  295 (360)
                      ++..+|++.+.   ..+++++|.|||+||++|+.+.+.+   .++.+.+++  ++.++.+|++.+. +            
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchh
Confidence            34456766653   4578999999999999999985554   666666665  6999999998773 2            


Q ss_pred             ---------------CCCCCCCCcEEEEE-eCCCccCceEecCCCC-HHHHHHHHHHhcC
Q 018164          296 ---------------PKLQVEEYPTLLFY-PAGDKANPIKVSARSS-SKNIAAFIKEQLK  338 (360)
Q Consensus       296 ---------------~~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~-~~~l~~~i~~~~~  338 (360)
                                     ..+++.++||++++ ++|+.+  .++.|..+ .+.+.++|++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~--~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPL--NKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBS--SCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEE--eeccCCCCCHHHHHHHHHHHHH
Confidence                           34689999999999 666654  36679888 9999999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.34  E-value=1.1e-11  Score=99.33  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             HHHHHHhhccCCceeecCcccccccccC--CCceEEEEEE-------ec-cchHHHHHHHHHHHHhhc-----CceEEEE
Q 018164           91 KILQFLNYNKFPLVTKLTDINSASVHSS--PIKLQVYVFA-------KA-DDLKSLLEPLEDIARNFK-----GKIMFTA  155 (360)
Q Consensus        91 ~l~~fi~~~~~p~v~~l~~~~~~~~~~~--~~~~~v~f~~-------~~-~~~~~~~~~~~~la~~~~-----~~i~f~~  155 (360)
                      .+.+++.......|.++|+.+|++++..  +.+++|.|++       .| +.|+.+.+.|+++|+++.     +++.|+.
T Consensus         7 ~~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~k   86 (178)
T 3ga4_A            7 NIDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFT   86 (178)
T ss_dssp             -CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hHHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEE
Confidence            3455566566677899999999998754  3457788888       38 999999999999999998     8899999


Q ss_pred             EeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc------------cccCC-C-CCCHHHHHHHHHHHhcC
Q 018164          156 VDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS------------KFLLE-S-DLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       156 vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~------------~y~~~-~-~~~~~~i~~fi~~~~~g  213 (360)
                      ||+++.+   .+++.|||++. |+++++.+++...            .|.+. + .++++.|.+||.+.++-
T Consensus        87 vD~d~~~---~la~~~~I~si-Ptl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           87 VDVNEVP---QLVKDLKLQNV-PHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             EETTTCH---HHHHHTTCCSS-CEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             EECccCH---HHHHHcCCCCC-CEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            9999875   99999999999 9996555544322            24333 4 78999999999998763

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.03  E-value=8.5e-14  Score=107.15  Aligned_cols=93  Identities=13%  Similarity=0.253  Sum_probs=75.6

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCC---CC-CCCCCCCCcEEEEE--eCCCccC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN---EH-PKLQVEEYPTLLFY--PAGDKAN  316 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~---~~-~~~~i~~~Pti~~~--~~g~~~~  316 (360)
                      ..+++++|+||++||++|+.+.|.+   .++++.+.+  ++.++.+|++..   .+ ..+++.++||+++|  .+|....
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA--RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            4578999999999999999999999   899888876  689999998532   34 36799999999999  4455411


Q ss_pred             ceEecCCCCHHHHHHHHHHhcCCC
Q 018164          317 PIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       317 ~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      ..++.|..+.+.|.++|++.++..
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            236889999999999999887644

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.34  E-value=8.1e-13  Score=96.52  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=78.0

Q ss_pred             CceEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C----C-CCCCCC-
Q 018164          230 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E----H-PKLQVE-  301 (360)
Q Consensus       230 ~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~----~-~~~~i~-  301 (360)
                      +....++. +.|++++ ..+++++|+|+|+||+.|+.+.|.+++++..  .  ++.++++|++.+ +    + .+++|. 
T Consensus         6 ~~~~~i~s~e~f~~ii-~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~--~v~~~~vdVde~r~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVI-EENKYVFVLKHSETCPISANAYDQFNKFLYE--R--DMDGYYLIVQQERDLSDYIAKKTNVKH   80 (112)
T ss_dssp             GCEEECCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H--TCCEEEEEGGGGHHHHHHHHHHHTCCC
T ss_pred             cceeecCCHHHHHHHH-hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C--CceEEEEEeecCchhhHHHHHHhCCcc
Confidence            34556644 6688876 4589999999999999999999999999984  3  789999999988 5    3 367999 


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      ..|++++|++|+.+- -.-.+..+.+.|.+.|
T Consensus        81 ~sPq~il~k~G~~v~-~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           81 ESPQAFYFVNGEMVW-NRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CSSEEEEEETTEEEE-EEEGGGCSHHHHHHHT
T ss_pred             CCCeEEEEECCEEEE-EeeccccCHHHHHHhh
Confidence            599999999998751 1245788888887654

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.32  E-value=4.2e-11  Score=102.79  Aligned_cols=209  Identities=12%  Similarity=0.093  Sum_probs=147.8

Q ss_pred             cCCceeecCc-ccccccccC-CCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          100 KFPLVTKLTD-INSASVHSS-PIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       100 ~~p~v~~l~~-~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      +-|.+.+++. ++++.+... ...++|.||.++  +......|.++|..+++.+.|+.+..      ..++..++++.  
T Consensus         4 ~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~--~~~~~~~F~~~A~~lr~~~~F~~t~~------~~v~~~~~v~~--   73 (250)
T 3ec3_A            4 GSPPSKEILTLKQVQEFLKDGDDVVILGVFQGV--GDPGYLQYQDAANTLREDYKFHHTFS------TEIAKFLKVSL--   73 (250)
T ss_dssp             -CCSSEECCCHHHHHHHHHHCSSCEEEEECSCT--TCHHHHHHHHHHHHHTTTCCEEEECC------HHHHHHHTCCS--
T ss_pred             CCCCceecCCHHHHHHHHhcCCCeEEEEEEcCC--CchHHHHHHHHHHhhhcCcEEEEECc------HHHHHHcCCCC--
Confidence            4577878855 666666665 666777787665  56677899999999999999998642      26788899975  


Q ss_pred             CceEEEEeCC-----CcccccCC--CCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCcc
Q 018164          178 NTVVTAFDNK-----AISKFLLE--SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD  250 (360)
Q Consensus       178 p~~~~~~~~~-----~~~~y~~~--~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~  250 (360)
                      |+++++....     ......|.  |..+.+.|.+||....-                 ..|..++..|+....  .+++
T Consensus        74 p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~-----------------Plv~e~t~~n~~~~~--~~~~  134 (250)
T 3ec3_A           74 GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL-----------------PLVGHRKTSNDAKRY--SKRP  134 (250)
T ss_dssp             SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS-----------------CTEEEECTTTHHHHS--CSSS
T ss_pred             CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCC-----------------CceeecCccchhhhh--ccCc
Confidence            6775444310     12233445  47899999999999642                 358899999988765  3677


Q ss_pred             EEEEEeCC-CC----hhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCCCCC--CC-cEEEEEeCCCccCceEe
Q 018164          251 VLLEVYTP-WC----VTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKLQVE--EY-PTLLFYPAGDKANPIKV  320 (360)
Q Consensus       251 ~~v~f~~~-~c----~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~~i~--~~-Pti~~~~~g~~~~~~~~  320 (360)
                      .++.|+.+ ++    ..+..++..+.++|+.++   ++.|+++|+..+  .+..+++.  ++ |.++++..++.  .+.+
T Consensus       135 l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~--ky~~  209 (250)
T 3ec3_A          135 LVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDESGK--KFAM  209 (250)
T ss_dssp             EEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSC--EEEC
T ss_pred             cEEEEEecccccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCc--eecC
Confidence            77777753 22    234557889999999998   599999999876  23345665  34 47777754332  2344


Q ss_pred             c-CCCCHHHHHHHHHHhcCCCCC
Q 018164          321 S-ARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       321 ~-g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      . +..+.+.|.+|+.+.+..+..
T Consensus       210 ~~~~~t~~~i~~Fv~~~~~Gkl~  232 (250)
T 3ec3_A          210 EPEEFDSDALREFVMAFKKGKLK  232 (250)
T ss_dssp             CCCSCCHHHHHHHHHHHHTTCCC
T ss_pred             CcccCCHHHHHHHHHHHHCCCcc
Confidence            4 678999999999999876644

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.32  E-value=4.8e-13  Score=110.21  Aligned_cols=114  Identities=16%  Similarity=0.256  Sum_probs=83.7

Q ss_pred             hHHhhcCCCCCCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccc
Q 018164          166 PFLTLFGLEESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV  244 (360)
Q Consensus       166 ~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~  244 (360)
                      ...+.+||++. |+++ +  +   .+|.+. +.++.+++..|+++++.  +.++++|+++|.....   ...|.++..+.
T Consensus        41 ~~a~~~gi~gv-P~fv-i--n---gk~~~~~~~~~~~~~~~f~~~~~~--l~~~L~s~~~p~~~~~---~~~g~~y~~l~  108 (197)
T 1un2_A           41 KAAADVQLRGV-PAMF-V--N---GKYQLNPQGMDTSNMDVFVQQYAD--TVKYLSEKKGGGTGAQ---YEDGKQYTTLE  108 (197)
T ss_dssp             HHHHHTTCCSS-SEEE-E--T---TTEEECGGGSCCSSHHHHHHHHHH--HHHHHTC------------CCBTTTEEECS
T ss_pred             HHHHHcCCCcC-CEEE-E--c---ceEecCccccccccHHHHHHHHHH--HHHHHHhCcccccccc---cCCCCCceEcc
Confidence            55788999998 8874 3  2   244443 34667789999999987  8889999998875432   34677888765


Q ss_pred             c-ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCC
Q 018164          245 L-NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       245 ~-~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      . ...++++|.||++||+||+.+.|.|   +++++.+.+  ++.|.+++++.+
T Consensus       109 ~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~  159 (197)
T 1un2_A          109 KPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFM  159 (197)
T ss_dssp             SCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSS
T ss_pred             CCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcC
Confidence            3 3467999999999999999999999   999999876  799999998765

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.32  E-value=5.6e-12  Score=93.46  Aligned_cols=105  Identities=15%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .+.+..++.+++......+.+++++||++| ++|+.+.+.+.++++.+++++.|+.+|++..+   .+++.||+.+. |+
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~i~~~-Pt   78 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ---KIADKYSVLNI-PT   78 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHTTCCSS-SE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCH---HHHHhcCcccC-CE
Confidence            467888999999998888889999999999 99999999999999999988999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++++ ..+ .....+.|..+.+.|.+|+++++
T Consensus        79 ~~~~-~~g-~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           79 TLIF-VNG-QLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEE-ETT-EEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEE-cCC-cEEEeeeccCCHHHHHHHHHHHh
Confidence            8655 333 23334578899999999999875

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.31  E-value=5.4e-12  Score=100.03  Aligned_cols=87  Identities=21%  Similarity=0.406  Sum_probs=72.2

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCC------------C-CCCCCCCCcEEEEE
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE------------H-PKLQVEEYPTLLFY  309 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~------------~-~~~~i~~~Pti~~~  309 (360)
                      .+++++|.|| ++||++|+.+.|.+   .++++.+..  ++.++.+|++...            + ..+++.++||++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~--~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV--HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC--cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            4789999999 99999999999999   778776644  7899999998753            2 35799999999999


Q ss_pred             -eCCCccCceEecCCC--CHHHHHHHHHHhcC
Q 018164          310 -PAGDKANPIKVSARS--SSKNIAAFIKEQLK  338 (360)
Q Consensus       310 -~~g~~~~~~~~~g~~--~~~~l~~~i~~~~~  338 (360)
                       ++|+.+  .++ |..  +.+.+.++|++.++
T Consensus       124 d~~G~~~--~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQL--ARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEE--EEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEE--EEe-cCCCCCHHHHHHHHHHHHh
Confidence             566553  466 888  99999999998875

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.31  E-value=2.6e-12  Score=100.19  Aligned_cols=108  Identities=15%  Similarity=0.184  Sum_probs=91.5

Q ss_pred             CCceeecCccccc-ccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSA-SVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~-~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .+.+..++.++|. .+...+.+++|+||++| +.|+.+.+.|.++++.+.+++.|+.+|++...   .+++.|||.++ |
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-P   80 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP---WTAEKYGVQGT-P   80 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCH---HHHHHHTCCEE-S
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCH---hHHHHCCCCcC-C
Confidence            3568889999998 56677888999999999 99999999999999999999999999999875   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      +++++ ..+ .....+.|..+.+.|.+|++.++...
T Consensus        81 t~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l~~~  114 (140)
T 3hz4_A           81 TFKFF-CHG-RPVWEQVGQIYPSILKNAVRDMLQHG  114 (140)
T ss_dssp             EEEEE-ETT-EEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEE-eCC-cEEEEEcCCCCHHHHHHHHHHHhccc
Confidence            98655 333 23334578899999999999998643

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.30  E-value=7e-12  Score=93.31  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             ceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+..++.++|.... ..+.++++.||++| ++|+.+.+.+.++++++.+++.|+.+|++..+   .+++.|||.+. |++
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~   80 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK---TLFQRFSLKGV-PQI   80 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHTTCCSS-CEE
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcCh---hHHHhcCCCcC-CEE
Confidence            46678999999877 67788999999999 99999999999999999988999999999875   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++ ..+ .....+.|..+.+.|.+|+++++.
T Consensus        81 ~~~-~~g-~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           81 LYF-KDG-EYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEE-ETT-EEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEE-ECC-EEEEEEeccCCHHHHHHHHHHHhc
Confidence            655 333 223344788999999999998764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.30  E-value=2.3e-11  Score=103.29  Aligned_cols=148  Identities=11%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CCceeecCcccccccccCCCceEEEEE--EeccchHHHHHHHHHHHHhhc---CceEEEEEeCCCcc--cchhHHhhcCC
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVF--AKADDLKSLLEPLEDIARNFK---GKIMFTAVDIADED--LAKPFLTLFGL  173 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~--~~~~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~--~~~~l~~~~gi  173 (360)
                      .+.|..++..+|+.++..+.+++|.||  ++|  |. +.|.|.++|..+.   +++.|+.|||+.++  .+..+|+.|||
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApW--Cg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V   91 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPY--GE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV   91 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCC--SH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCC--Cc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCC
Confidence            345788999999998777788999999  899  55 9999999999995   47999999999710  01489999999


Q ss_pred             C--CCCCceEEEEeCCC-cccccC--CCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccC
Q 018164          174 E--ESKNTVVTAFDNKA-ISKFLL--ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSH  248 (360)
Q Consensus       174 ~--~~~p~~~~~~~~~~-~~~y~~--~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~  248 (360)
                      .  ++ |+++ ++. +. .....|  .|.++.+.|.+|+++....    + .  ..    .+.+     ..++.++.   
T Consensus        92 ~~~~~-PTl~-~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~----~-~--~~----~g~i-----~~~d~l~~---  149 (248)
T 2c0g_A           92 DDKNF-PSIF-LFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPL----Y-I--GR----DGCI-----KEFNEVLK---  149 (248)
T ss_dssp             CTTSC-CEEE-EES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSC----C-C--CC----TTCC-----HHHHHHHT---
T ss_pred             CcCCC-CeEE-EEe-CCcCcceeecccCCCCHHHHHHHHHHhhcc----c-c--CC----CCch-----HHHHHHHH---
Confidence            9  88 9995 444 43 223455  7999999999999997641    1 0  01    1111     23444432   


Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhc
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFK  278 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~  278 (360)
                           .|.+.||..|..+...+++++..+.
T Consensus       150 -----~f~~~~~~~~~~~~~~~~~~~~~l~  174 (248)
T 2c0g_A          150 -----NYANIPDAEQLKLIEKLQAKQEQLT  174 (248)
T ss_dssp             -----TGGGSCHHHHHHHHHHHHHHHHHCC
T ss_pred             -----HHhcccchhHHHHHHHHHHHHHHcc
Confidence                 2778899999999999998888774

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.30  E-value=2.3e-11  Score=94.68  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=92.4

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc---eEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~---i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+..++.++|......+.+++|+||++| +.|+.+.+.|.++++++.++   +.|+.+|++...   .+++.|||..+ 
T Consensus        17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~-   92 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS---MLASKFDVSGY-   92 (140)
T ss_dssp             TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH---HHHHHTTCCSS-
T ss_pred             CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH---HHHHHCCCCcc-
Confidence            45778899999988878888999999999 99999999999999999876   999999999875   89999999998 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccC
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLT  216 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~  216 (360)
                      |+++++ ..+.  ...+.|..+.+.|.+|++..+.....
T Consensus        93 Pt~~~~-~~G~--~~~~~g~~~~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           93 PTIKIL-KKGQ--AVDYDGSRTQEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             SEEEEE-ETTE--EEECCSCCCHHHHHHHHHHHHSSSCC
T ss_pred             CeEEEE-ECCc--EEEcCCCCCHHHHHHHHHHhcCCCCC
Confidence            999655 4433  44568899999999999999865443

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.29  E-value=1.4e-12  Score=96.20  Aligned_cols=75  Identities=15%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------C-CC-CCCCCCCCcEEEEEeCCCccCceE
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA------N-EH-PKLQVEEYPTLLFYPAGDKANPIK  319 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------~-~~-~~~~i~~~Pti~~~~~g~~~~~~~  319 (360)
                      .+.++|.|||+||++|+.+.|.|+++++.+.        .+|++.      + ++ ..++|.++||+++  +| .    .
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G-~----~   76 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG-R----T   76 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TT-E----E
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CC-E----E
Confidence            4677899999999999999999999986663        456652      2 23 3679999999877  44 2    4


Q ss_pred             ecCCCCHHHHHHHHHHhc
Q 018164          320 VSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       320 ~~g~~~~~~l~~~i~~~~  337 (360)
                      |.|.++.+.|.+|+.-..
T Consensus        77 ~~G~~~~~~l~~~~~~~~   94 (106)
T 3kp8_A           77 YTGVRSLEALAVASGYPL   94 (106)
T ss_dssp             EESCCCHHHHHHHHTCCC
T ss_pred             ecCCCCHHHHHHHhCCcc
Confidence            899999999999986443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.29  E-value=2.6e-11  Score=93.01  Aligned_cols=106  Identities=18%  Similarity=0.093  Sum_probs=89.5

Q ss_pred             CceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          102 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       102 p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +.+..++.++|.. +...+.+++++||++| ++|+.+.+.|.++++++++.+.|+.+|++...   .+++.|+|..+ |+
T Consensus        17 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~-Pt   92 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQ---SLGGQYGVQGF-PT   92 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCH---HHHHHHTCCSS-SE
T ss_pred             CCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCH---HHHHHcCCCcc-CE
Confidence            3577899999987 4466778999999999 99999999999999999988999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++ +++.+......+.|..+.+.|.+|+.+.+.
T Consensus        93 ~~-~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           93 IK-IFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EE-EESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EE-EEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            95 444443334556888999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.29  E-value=1.5e-11  Score=90.68  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=86.6

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      ..+..++.+++.... .+.+.+++||++| +.|+.+.+.+.++++++++++.|+.+|++...   .+++.||+.++ |++
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~   77 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP---STAAKYEVMSI-PTL   77 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSB-SEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCH---HHHHhCCCccc-CEE
Confidence            346788999999887 7778999999999 99999999999999999988999999999875   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +++ ..+ .....+.|..+.+.|.+|+++.
T Consensus        78 ~~~-~~G-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           78 IVF-KDG-QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEE-ETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEE-eCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            544 433 2333457889999999999864

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.28  E-value=2.8e-11  Score=89.52  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=87.0

Q ss_pred             CceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          102 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       102 p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      ..|..++.++|.. +...+.+++++|+++| +.|+.+.+.|.++++++.+++.|+.+|++..+   .+++.+|+.+. |+
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt   77 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-PT   77 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTTCCSS-SE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcCCccc-CE
Confidence            3577899999985 4466778899999999 99999999999999999988999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++++ ..+ .....+.|..+.+.|.+|+++.+
T Consensus        78 ~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           78 LLLF-KNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEE-ETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEE-eCC-EEEEEEecCCCHHHHHHHHHHhh
Confidence            8655 433 22334578889999999999875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=3e-11  Score=93.08  Aligned_cols=111  Identities=11%  Similarity=0.103  Sum_probs=90.1

Q ss_pred             cCCceeecCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          100 KFPLVTKLTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ..+.|..++.++|..... .+.+++|.||++| ++|+.+.+.|.++++++.  +++.|+.+|++...   .+++.|+|.+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~   81 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND---ITNDQYKVEG   81 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC---CCCSSCCCSS
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH---HHHhhcCCCc
Confidence            356788999999998765 4778899999999 999999999999999998  56999999999775   7888999999


Q ss_pred             CCCceEEEEeCCCcccccCC-CCCCHHHHHHHHHHHhcCc
Q 018164          176 SKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~-~~~~~~~i~~fi~~~~~g~  214 (360)
                      + |+++++..++......+. |..+.+.|.+|+...+...
T Consensus        82 ~-Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           82 F-PTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             S-SEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             C-CEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            9 999644333323333456 5589999999999988643

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.27  E-value=1.8e-11  Score=94.51  Aligned_cols=99  Identities=21%  Similarity=0.379  Sum_probs=76.6

Q ss_pred             EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------------------
Q 018164          233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------------------  292 (360)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--------------------  292 (360)
                      ..++++.+.-.- ..+++++|.||++||++|..+.+.+.++++.+.   ++.++.++++.                    
T Consensus        10 ~~~~g~~~~l~~-~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1lu4_A           10 TTLSGAPFDGAS-LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLN   85 (136)
T ss_dssp             EBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEE
T ss_pred             ecCCCCeecHHH-hCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEE
Confidence            334444443322 246899999999999999999999999999986   68899999876                    


Q ss_pred             --C-CC-CCCCCCCCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHHhc
Q 018164          293 --N-EH-PKLQVEEYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKEQL  337 (360)
Q Consensus       293 --~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~~~  337 (360)
                        + .+ ..+++.++|+++++..++++ . ++.   |..+.+.|.++|++.+
T Consensus        86 d~~~~~~~~~~i~~~P~~~lid~~G~i-~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           86 DADGVIWARYNVPWQPAFVFYRADGTS-T-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             CTTSHHHHHTTCCSSSEEEEECTTSCE-E-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCchhHHHhcCCCCCCEEEEECCCCcE-E-EEEcCCCccCHHHHHHHHHHHh
Confidence              2 22 24799999999999554443 2 788   9999999999998764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.26  E-value=3.1e-11  Score=93.05  Aligned_cols=101  Identities=16%  Similarity=0.309  Sum_probs=78.0

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------  293 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------  293 (360)
                      +..++++.+.... ..+++++|.||++||++|+.+.+.+.++++.+.   ++.++.++++.+                  
T Consensus        10 ~~~~~g~~~~l~~-~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (136)
T 1zzo_A           10 AKTLDGHDFHGES-LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (136)
T ss_dssp             EEBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cccCCCCEeeHHH-hCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEE
Confidence            3444555554432 246899999999999999999999999999986   588888888541                  


Q ss_pred             ------CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          294 ------EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       294 ------~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                            .+ ..+++.++|+++++..++++ . .+.|..+.+.|.++|.+.+.
T Consensus        86 ~~d~~~~~~~~~~i~~~P~~~~id~~g~i-~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           86 LADTDGSVWANFGVTQQPAYAFVDPHGNV-D-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCE-E-EEESCCCHHHHHHHHHHHC-
T ss_pred             EEcCCcHHHHHcCCCCCceEEEECCCCCE-E-EEecCCCHHHHHHHHHHHhc
Confidence                  11 24689999999999655453 2 78899999999999998764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.26  E-value=3.4e-11  Score=94.33  Aligned_cols=102  Identities=14%  Similarity=0.262  Sum_probs=81.1

Q ss_pred             EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------
Q 018164          233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------  293 (360)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------  293 (360)
                      ..++++.+.... ..+++++|.||++||++|+.+.+.+.++++.+.+  ++.++.++++..                   
T Consensus        15 ~~~~g~~~~~~~-~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhh-cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC--CcEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            567777665543 3568999999999999999999999999999986  488999987541                   


Q ss_pred             ---------CC-CCCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          294 ---------EH-PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       294 ---------~~-~~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                               .+ ..+++.++|+++++ ++|..  ..++.|..+.+.|.++|++.+..
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i--~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQL--RHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBE--EEEEESCSTTHHHHHHHHHHHTT
T ss_pred             cceEECCchhHHHHhCCCCCCEEEEECCCCcE--EEEecCCCCHHHHHHHHHHHHhc
Confidence                     12 24699999999999 45543  34678989999999999988764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.4e-11  Score=92.69  Aligned_cols=108  Identities=21%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             CCceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhc----CceEEEEEeCCCcccchhHHhhcCCC
Q 018164          101 FPLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK----GKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~----~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      ...+..++.++|.... ..+.+++|+||++| ++|+.+.+.|.++++++.    +++.|+.+|++...   .+++.|+|.
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~   82 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ---VLASRYGIR   82 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC---HHHHHHTCC
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH---HHHHhCCCC
Confidence            3457889999998754 56778899999999 999999999999999998    78999999999876   899999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      ++ |+++++ ..+ .....+.|..+.+.|.+|+.+.+...
T Consensus        83 ~~-Pt~~~~-~~g-~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           83 GF-PTIKIF-QKG-ESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             SS-SEEEEE-ETT-EEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             ee-CeEEEE-eCC-CceEEecCCCCHHHHHHHHHHHhhcc
Confidence            99 999644 443 23445588899999999999988653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.26  E-value=4.7e-11  Score=89.32  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=88.9

Q ss_pred             CCceeecCccccccc-ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSASV-HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~-~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .+.+..++.++|... ...+.+++++||++| +.|+.+.+.|.++++.+.+++.|+.+|++...   .+++.+|+... |
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~v~~~-P   81 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP---TTVKKYKVEGV-P   81 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH---HHHHHTTCCSS-S
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCH---HHHHHcCCCce-e
Confidence            345888999999865 456778899999999 99999999999999999988999999999875   89999999998 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +++++ ..+ .....+.|..+.+.|.+|++.++.+
T Consensus        82 t~~~~-~~G-~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           82 ALRLV-KGE-QILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             EEEEE-ETT-EEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEE-cCC-EEEEEecCCCCHHHHHHHHHHHhcC
Confidence            98655 433 2333457888999999999998753

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.25  E-value=2.8e-11  Score=90.31  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=86.9

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      +.+++.++|.... .+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.||+.+. |++++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~   77 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ---ETAGKYGVMSI-PTLLV   77 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCC---SHHHHTTCCSB-SEEEE
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCH---HHHHHcCCCcc-cEEEE
Confidence            5678999998877 7778899999999 99999999999999999988999999999876   89999999999 99965


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      + ..+ .....+.|..+.+.|.+|+.+.+.
T Consensus        78 ~-~~G-~~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           78 L-KDG-EVVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             E-ETT-EEEEEEESCCCHHHHHHHHHTTSC
T ss_pred             E-eCC-EEEEEEeCCCCHHHHHHHHHHHHH
Confidence            5 433 233445788999999999988764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.25  E-value=4.1e-11  Score=94.21  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      ..+..++.+++......+.+++|.||++| ++|+.+.+.|.++++++.+++.|+.+|++...   .+++.|||.++ |++
T Consensus        38 ~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~-Pt~  113 (148)
T 3p2a_A           38 GEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP---ALSTRFRIRSI-PTI  113 (148)
T ss_dssp             CCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSS-SEE
T ss_pred             CCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCH---HHHHHCCCCcc-CEE
Confidence            45778999999988888889999999999 99999999999999999988999999999875   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +++ ..+ .....+.|..+.+.|.+|+++.+.+
T Consensus       114 ~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          114 MLY-RNG-KMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEE-ETT-EEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEE-ECC-eEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            654 433 2333458899999999999998864

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.25  E-value=3.4e-11  Score=96.35  Aligned_cols=106  Identities=16%  Similarity=0.299  Sum_probs=81.0

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC-----------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-----------  298 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~-----------  298 (360)
                      +..++++.+.--- ..+++++|.||++||++|..+.+.+.++++.+.+. ++.++.++++.+  .+..+           
T Consensus        19 l~~~~g~~~~l~~-~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~   96 (165)
T 3or5_A           19 GVTVDGKPFSSAS-LKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR-GFTFVGIAVNEQLPNVKNYMKTQGIIYPVM   96 (165)
T ss_dssp             EECTTSCEEEGGG-GTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-TEEEEEEECSCCHHHHHHHHHHHTCCSCEE
T ss_pred             eeCCCCCEechhH-cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCCceE
Confidence            3444555544332 24689999999999999999999999999999863 599999998875  22223           


Q ss_pred             ----------------CCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          299 ----------------QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       299 ----------------~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                                      ++.++|+++++..++++ ...+.|..+.+.|.++|++.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           97 MATPELIRAFNGYIDGGITGIPTSFVIDASGNV-SGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             ECCHHHHHHHHTTSTTCSCSSSEEEEECTTSBE-EEEECSCCCHHHHHHHHHHHHC--
T ss_pred             ecCHHHHHHHhhhhccCCCCCCeEEEECCCCcE-EEEEcCCCCHHHHHHHHHHHHhhh
Confidence                            68999999999544443 357889999999999999998744

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.25  E-value=1.6e-11  Score=90.39  Aligned_cols=102  Identities=16%  Similarity=0.144  Sum_probs=85.9

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      |..++.++|......+.+++++||++| +.|+.+.+.+.++++++.+++.|+.+|++...   .+++.+|+.+. |++++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~v~~~-Pt~~~   77 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---ETTSQFGIMSI-PTLIL   77 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCH---HHHHHTTCCSS-SEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCH---HHHHHcCCccc-cEEEE
Confidence            567899999987778888999999999 99999999999999999988999999999775   89999999999 99865


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      + ..+ .....+.|..+.+.|.+|+++.+
T Consensus        78 ~-~~G-~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           78 F-KGG-RPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             E-ETT-EEEEEEESCCCHHHHHHHTTTTT
T ss_pred             E-eCC-eEEEEEecCCCHHHHHHHHHHHh
Confidence            5 433 22334478889999999987654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.25  E-value=2.1e-11  Score=95.59  Aligned_cols=89  Identities=10%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHH---HHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEe-CCCccCceEe
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLA---KHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP-AGDKANPIKV  320 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la---~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~-~g~~~~~~~~  320 (360)
                      ..+++++|.|||+||++|+.+.|.+.+..   ...+.  ++..+.+|.+..+. ..+++.++||+++|. +|+.+.  +.
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~--~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~--~~  117 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN--KFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRA--DI  117 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHH--TCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCT--TC
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhc--CeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEE--EE
Confidence            46899999999999999999999998643   23322  45555555333333 367999999999998 676653  45


Q ss_pred             cCC----------CCHHHHHHHHHHhcC
Q 018164          321 SAR----------SSSKNIAAFIKEQLK  338 (360)
Q Consensus       321 ~g~----------~~~~~l~~~i~~~~~  338 (360)
                      .|.          .+.+.+++.|++.+.
T Consensus       118 ~G~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A          118 AGRYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             CCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             eCCcCCcccccchhhHHHHHHHHHHHHH
Confidence            565          344556666665543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.25  E-value=6.6e-11  Score=89.47  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=86.2

Q ss_pred             CCceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-----ceEEEEEeCCCcccchhHHhhcCC
Q 018164          101 FPLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-----KIMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-----~i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      .+.+..++.++|.... ..+.+++|+||++| ++|+.+.+.|.++++++.+     ++.|+.+|++..    .+++  +|
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~~~--~v   79 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN----DVPD--EI   79 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS----CCSS--CC
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc----cccc--cc
Confidence            4567889999999875 66788999999999 9999999999999999987     799999999976    3555  99


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      .++ |+++++..++......+.|..+.+.|.+|+++.+..
T Consensus        80 ~~~-Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           80 QGF-PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SSS-SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CcC-CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            998 999544333232245568889999999999997653

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.25  E-value=2.7e-11  Score=96.01  Aligned_cols=105  Identities=10%  Similarity=0.095  Sum_probs=88.5

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      .+.+++..+|......+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++..+   .+++.|||..+ |+++
T Consensus        48 ~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~-Pt~~  123 (155)
T 2ppt_A           48 KVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP---AVAGRHRIQGI-PAFI  123 (155)
T ss_dssp             SEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTST---HHHHHTTCCSS-SEEE
T ss_pred             CCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccH---HHHHHcCCCcC-CEEE
Confidence            3677888888887777788999999999 99999999999999999988999999999876   89999999999 9986


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      ++ .++. ....+.|..+.+.|.+|+++.+..
T Consensus       124 ~~-~~G~-~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          124 LF-HKGR-ELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EE-ETTE-EEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EE-eCCe-EEEEecCCCCHHHHHHHHHHHhcc
Confidence            55 4332 233457888999999999998753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.24  E-value=5.2e-11  Score=87.84  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             ceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+..++.++|.... ..+.+++++|+++| +.|+.+.+.+.++++++.+++.|+.+|++..+   .+++.+|+.+. |++
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~   78 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP---ETPNAYQVRSI-PTL   78 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCC---HHHHHTTCCSS-SEE
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCH---HHHHhcCCCcc-CEE
Confidence            47789999998644 66778899999999 99999999999999999988999999999876   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +++ ..+ .....+.|..+.+.|.+|++++
T Consensus        79 ~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           79 MLV-RDG-KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEE-ETT-EEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEE-eCC-EEEEEecCCCCHHHHHHHHHhc
Confidence            655 433 2233457888999999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.24  E-value=2.1e-11  Score=90.27  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      .+.+++.++|......+.+++++|+++| +.|+.+.+.|.++++.+.+++.|+.+|++..+   .+++.||+.+. |+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~~   77 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP---KTAMRYRVMSI-PTVI   77 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH---HHHHHTTCCSS-SEEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCH---hHHHhCCCCcC-CEEE
Confidence            3668899999987777888999999999 99999999999999999988999999999875   89999999999 9986


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++ ..+ .....+.|..+.+.|.+|++..+.
T Consensus        78 ~~-~~g-~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           78 LF-KDG-QPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             EE-ETT-EEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             EE-eCC-cEeeeEeCCCCHHHHHHHHHHHhh
Confidence            55 433 223345788899999999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.23  E-value=4.2e-11  Score=93.26  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CCceeecCccccccccc------------CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhH
Q 018164          101 FPLVTKLTDINSASVHS------------SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF  167 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~------------~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l  167 (360)
                      .+.+..++.++|...+.            .+.+++|.||++| ++|+.+.+.|.++++.+.+++.|+.+|++...   .+
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~   97 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP---EL   97 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCH---HH
Confidence            34566677777766443            3678899999999 99999999999999999988999999999875   89


Q ss_pred             HhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          168 LTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       168 ~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++.|||.++ |+++++...+..  ..+.|..+.+.|.+||+.++.
T Consensus        98 ~~~~~v~~~-Pt~~~~~~~g~~--~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           98 ARDFGIQSI-PTIWFVPMKGEP--QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHHTTCCSS-SEEEEECSSSCC--EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHHcCCCCc-CEEEEEeCCCCE--EEEeCCCCHHHHHHHHHHHHc
Confidence            999999999 998544233322  245788999999999999875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.23  E-value=5.8e-12  Score=100.90  Aligned_cols=90  Identities=14%  Similarity=0.296  Sum_probs=68.5

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-C-CCCCC--CCCcEEEEE-eCCCccCceE
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-H-PKLQV--EEYPTLLFY-PAGDKANPIK  319 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~-~~~~i--~~~Pti~~~-~~g~~~~~~~  319 (360)
                      ..+++++|.||++||++|+.+.|.|.++++....  ++.|+.+|++.+ . . ..+++  .++||+++| ++|+.+.  +
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~--~  119 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP--E  119 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT--T
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEE--E
Confidence            5678999999999999999999999998776543  345566666555 2 3 34566  679999999 6776643  4


Q ss_pred             ecC----------CCCHHHHHHHHHHhcCC
Q 018164          320 VSA----------RSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       320 ~~g----------~~~~~~l~~~i~~~~~~  339 (360)
                      +.|          ..+.+.|.++|++.+..
T Consensus       120 ~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A          120 IINENGNPSYKYFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             CCCTTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred             EeCCCCccchhcccCCHHHHHHHHHHHHHh
Confidence            556          37899999999987653

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.22  E-value=4.7e-11  Score=91.43  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=86.5

Q ss_pred             ceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .|..++.++|.. +...+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.|||.++ |++
T Consensus        23 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~   98 (128)
T 2o8v_B           23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-PTL   98 (128)
T ss_dssp             CSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCC---TTSGGGTCCSS-SEE
T ss_pred             ccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCcc-CEE
Confidence            367789999985 4466778899999999 99999999999999999988999999999875   89999999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++ ..+ .....+.|..+.+.|.+|+++.+
T Consensus        99 ~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           99 LLF-KNG-EVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEE-ETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEE-eCC-EEEEEEcCCCCHHHHHHHHHHhh
Confidence            655 433 23334578889999999999876

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.22  E-value=3.4e-11  Score=88.21  Aligned_cols=102  Identities=18%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      |.+++.+++......+.+++++|+++| +.|+.+.+.+.++++.+++ +.|+.+|++...   .+++.+|+.++ |++++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~~~~~v~~~-Pt~~~   75 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENP---DIAARYGVMSL-PTVIF   75 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTTCCSS-CEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCH---HHHHhCCcccc-CEEEE
Confidence            457889999887777788999999999 9999999999999999988 999999999775   89999999998 99865


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      + ..+ .....+.|..+.+.+.+|++..++
T Consensus        76 ~-~~g-~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           76 F-KDG-EPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             E-ETT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             E-ECC-eEhhhccCCCCHHHHHHHHHHHhc
Confidence            5 433 223345788899999999998764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.22  E-value=9.1e-12  Score=86.16  Aligned_cols=73  Identities=19%  Similarity=0.375  Sum_probs=59.8

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEEeCCCccCceEecCCC-CHHH
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANPIKVSARS-SSKN  328 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~-~~~~  328 (360)
                      +.|.||++||++|+.+.|.++++++.+..  ++.++.+|  ..++ ..+++.++||+++  +|+.    ...|.. +.+.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~~v~--~~~~~~~~~v~~~Pt~~~--~G~~----~~~G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK--EMDQILEAGLTALPGLAV--DGEL----KIMGRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC--SHHHHHHHTCSSSSCEEE--TTEE----EECSSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC--ceEEEEec--CHHHHHHCCCCcCCEEEE--CCEE----EEcCCCCCHHH
Confidence            46899999999999999999999999876  79999998  2233 4679999999998  5543    233887 8999


Q ss_pred             HHHHH
Q 018164          329 IAAFI  333 (360)
Q Consensus       329 l~~~i  333 (360)
                      |.++|
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98876

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.22  E-value=2.8e-11  Score=91.26  Aligned_cols=107  Identities=18%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+..++.++|......+.+++++||++| +.|+.+.+.|.++++.++   .++.|+.+|++...   .+++.+|+.++ 
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~-   82 (120)
T 1mek_A            7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYGVRGY-   82 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHTCCSS-
T ss_pred             CCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH---HHHHHCCCCcc-
Confidence            34778999999988877888999999999 999999999999999997   36999999999875   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++.++.......+.|..+.+.|.+|+++.++
T Consensus        83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            99965533322222456888999999999998764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=6.1e-11  Score=90.43  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=89.7

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      ...+..++.++|...+..  +++|.||++| ++|+.+.+.|.++++++.+ ++.|+.+|++...   .+++.|+|..+ |
T Consensus         6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~-P   79 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP---GLSGRFIINAL-P   79 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCH---HHHHHTTCCSS-S
T ss_pred             CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCH---HHHHHcCCccc-C
Confidence            356788999999987654  3889999999 9999999999999999985 6999999999875   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCC
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      +++++ ..+.  ...+.|..+.+.|.+|+++.+...+++
T Consensus        80 t~~~~-~~G~--~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           80 TIYHC-KDGE--FRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             EEEEE-ETTE--EEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             EEEEE-eCCe--EEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            99655 4433  355689999999999999987654443

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.21  E-value=5.9e-11  Score=92.36  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=75.6

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      +.+.+++.++|......+..+++.||++| ++|+.+.+.|.+++.++.+++.|+.+|++...   .+++.||+.++ |++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~  108 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP---GLAARYGVRSV-PTL  108 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTTCCSS-SEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHCCCCcc-CEE
Confidence            55678888898886654444889999999 99999999999999999988999999999875   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +++ ..+. ....+.|..+.+.|.+|++.++.|
T Consensus       109 ~~~-~~G~-~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          109 VLF-RRGA-PVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EEE-ETTE-EEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             EEE-eCCc-EEEEEeCCCCHHHHHHHHHHHHcc
Confidence            655 4332 233457888999999999998865

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.21  E-value=4.5e-11  Score=90.58  Aligned_cols=104  Identities=18%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             ceeecCccccc-ccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSA-SVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~-~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+..++.++|. .+...+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.|||.++ |++
T Consensus         4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~   79 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP---QTCQKAGIKAY-PSV   79 (122)
T ss_dssp             CSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---HHHHHTTCCSS-SEE
T ss_pred             chhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCH---HHHHHcCCCcc-ceE
Confidence            46788999995 46667788999999999 99999999999999999988999999999875   89999999999 999


Q ss_pred             EEEEeCCCcccccCCCC----CCHHHHHHHHHHHhc
Q 018164          181 VTAFDNKAISKFLLESD----LTPSNIEEFCSRLLH  212 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  212 (360)
                      +++..++.  ...+.|.    .+.+.|.+|+...+.
T Consensus        80 ~~~~~~~~--~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           80 KLYQYERA--KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEGG--GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEeCCCc--cceeeccccCcCCHHHHHHHHHHHHH
Confidence            65544433  2223443    799999999999875

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.21  E-value=6.5e-11  Score=93.33  Aligned_cols=93  Identities=12%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------------CC-CCCC-
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------------EH-PKLQ-  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------------~~-~~~~-  299 (360)
                      .+++++|.||++||++|+.+.|.+.++++.+++ .++.++.++++..                         .+ ..++ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK-GSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            478999999999999999999999999999964 3799999998621                         11 2456 


Q ss_pred             -CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          300 -VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       300 -i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                       +.++|+++++..++++ ..++.|..+.+.|.++|++..+...
T Consensus       102 ~v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGY-RQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             CSCCSSEEEEEETTTTE-EEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             ccCCCCEEEEECCCCcE-EEEECCCCCHHHHHHHHHHHHHHhh
Confidence             8999999999554443 4578899999999999998876543

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.20  E-value=3.5e-11  Score=88.55  Aligned_cols=95  Identities=11%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             Cccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          108 TDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       108 ~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      +.++|+..+.  .+.++++.||++| ++|+.+.+.|.++++.+.+ +.|+.||++..+   .+++.|||.+. |+++++.
T Consensus         7 ~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~---~l~~~~~V~~~-PT~~~~~   81 (105)
T 3zzx_A            7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECE---DIAQDNQIACM-PTFLFMK   81 (105)
T ss_dssp             SHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTTCH---HHHHHTTCCBS-SEEEEEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecccCH---HHHHHcCCCee-cEEEEEE
Confidence            4456766553  3467788899999 9999999999999999975 899999999875   99999999999 9986554


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      ++...  ..+.| .+.+.|.+||+.+
T Consensus        82 ~G~~v--~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NGQKL--DSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             TTEEE--EEEES-CCHHHHHHHHHHH
T ss_pred             CCEEE--EEEeC-cCHHHHHHHHHhc
Confidence            33222  23356 6899999999874

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.20  E-value=2.8e-11  Score=90.93  Aligned_cols=103  Identities=10%  Similarity=0.031  Sum_probs=84.1

Q ss_pred             CCceeecCccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          101 FPLVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      .+.....+.++|+..+.  .+.+++|.||++| ++|+.+.+.|.++++++.+ +.|+.+|++...   .+++.|||.+. 
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~---~l~~~~~v~~~-   85 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ---DVASECEVKSM-   85 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTH---HHHHHTTCCSS-
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHcCCccc-
Confidence            35566777888888776  6788999999999 9999999999999999988 999999999875   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      |+++++ ..+ .....+.|. +.+.|.+|+++++
T Consensus        86 Pt~~~~-~~G-~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           86 PTFQFF-KKG-QKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             SEEEEE-SSS-SEEEEEESC-CHHHHHHHHHHHC
T ss_pred             cEEEEE-eCC-eEEEEEcCC-CHHHHHHHHHHhC
Confidence            998655 332 223334677 9999999998753

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.20  E-value=6.8e-11  Score=89.23  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             CCceeecCccccccc-ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSASV-HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~-~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      -+.+..++.++|... ...+.+.+++||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.|||.++ |
T Consensus        12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~-P   87 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT---DLAIEYEVSAV-P   87 (119)
T ss_dssp             CSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTH---HHHHHTTCCSS-S
T ss_pred             ceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCH---HHHHHcCCCcc-c
Confidence            456888999999874 456778899999999 99999999999999999888999999999775   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++++ ..+ .....+.|..+.+.|.+|+++++
T Consensus        88 t~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAM-KNG-DVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEE-ETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEE-eCC-cEEEEEcCCCCHHHHHHHHHHHh
Confidence            98655 433 22334578889999999999875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.20  E-value=1.1e-10  Score=87.03  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             CceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          102 PLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       102 p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      ..|..++.+++.. +...+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.||+.+. |+
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt   80 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP---GTAAKYGVMSI-PT   80 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSS-SE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCH---HHHHhCCCCcc-cE
Confidence            3567889999876 4456778899999999 99999999999999999888999999999775   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++++ ..+ .....+.|..+.+.|.+|++++++
T Consensus        81 ~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           81 LNVY-QGG-EVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEE-ETT-EEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEE-eCC-EEEEEEeCCCCHHHHHHHHHHHhh
Confidence            8544 433 223445788899999999998764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.20  E-value=4.6e-11  Score=88.01  Aligned_cols=97  Identities=10%  Similarity=0.044  Sum_probs=70.9

Q ss_pred             CcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          108 TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       108 ~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      +.+++......+.++++.||++| ++|+.+.+.+.++++++. ++.|+.+|++..+   .+++.|||.+. |+++++ ..
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~~-~~   80 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQ---EIAGRYAVFTG-PTVLLF-YN   80 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC------------CCC-CEEEEE-ET
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCH---HHHHhcCCCCC-CEEEEE-eC
Confidence            55678877778889999999999 999999999999999995 6999999999876   89999999999 998655 43


Q ss_pred             CCcccccCCCCCCHHHHHHHHHHHh
Q 018164          187 KAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       187 ~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      + .....+.|..+.+.|.++++.++
T Consensus        81 G-~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 G-KEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             T-EEEEEEESSCCHHHHHHHHHTTC
T ss_pred             C-eEEEEEeCCcCHHHHHHHHHHhh
Confidence            3 22334468889999999998764

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.19  E-value=9e-11  Score=86.21  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=83.9

Q ss_pred             eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      |..++.++|.... ..+.+.+++||++| +.|+.+.+.+.++++++++++.|+.+|++...   .+++.+|+.+. |+++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~~   77 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP---GIATQYNIRSI-PTVL   77 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSS-SEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchH---HHHHhCCCCcc-cEEE
Confidence            4678888988744 55678899999999 99999999999999999988999999999775   89999999999 9985


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++ ..+ .....+.|..+.+.+.+++++++
T Consensus        78 ~~-~~g-~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           78 FF-KNG-ERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EE-ETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EE-eCC-eEEEEEecCCCHHHHHHHHHhhC
Confidence            44 433 22333468889999999998763

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.19  E-value=7.4e-11  Score=87.07  Aligned_cols=102  Identities=13%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      |..++.++|.... ..+.++++.|+++| +.|+.+.+.|.++++++++++.|+.+|++...   .+++.+|+.++ |+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~~   78 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP---NVASEYGIRSI-PTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHHTCCSS-CEEE
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCCCCcC-CEEE
Confidence            5678888888744 56778899999999 99999999999999999988999999999775   89999999998 9985


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++ ..+ .....+.|..+.+.+.+++++++
T Consensus        79 ~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           79 VF-KGG-KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EE-SSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EE-eCC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            44 332 23344578889999999999875

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.18  E-value=9.7e-11  Score=92.27  Aligned_cols=94  Identities=18%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------------CC-CCCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------------EH-PKLQVEE  302 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~-~~~~i~~  302 (360)
                      .+++++|.||++||++|..+.+.+.++++.+.+. ++.++.++++..                       .+ ..+++.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            4689999999999999999999999999999752 588888887652                       22 2568999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      +|+++++..++++ ...+.|..+.+.|.++|.+.+.....
T Consensus       104 ~P~~~lid~~G~i-~~~~~G~~~~~~l~~~l~~ll~~~~~  142 (151)
T 2f9s_A          104 LPTTFLINPEGKV-VKVVTGTMTESMIHDYMNLIKPGETS  142 (151)
T ss_dssp             SCEEEEECTTSEE-EEEEESCCCHHHHHHHHHHHSCC---
T ss_pred             CCeEEEECCCCcE-EEEEeCCCCHHHHHHHHHHHHhhhhc
Confidence            9999999444343 34678999999999999999876544

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.17  E-value=5.9e-11  Score=89.73  Aligned_cols=108  Identities=17%  Similarity=0.095  Sum_probs=87.0

Q ss_pred             ccCCceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164           99 NKFPLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus        99 ~~~p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      .....+..++.+++.. +...+.+++++|+++| +.|+.+.+.|.++++++++++.|+.+|++...   .+++.+||.+.
T Consensus         9 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~i~~~   85 (121)
T 2i1u_A            9 SEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---ETARNFQVVSI   85 (121)
T ss_dssp             ---CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSS
T ss_pred             hhcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCH---HHHHhcCCCcC
Confidence            3445678899999986 4466778899999999 99999999999999999888999999999775   89999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+++++ ..+ .....+.|..+.+.|.+|++..+.
T Consensus        86 -Pt~~~~-~~g-~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           86 -PTLILF-KDG-QPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             -SEEEEE-ETT-EEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             -CEEEEE-ECC-EEEEEecCCCCHHHHHHHHHHHHh
Confidence             998544 433 223345788899999999987654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.17  E-value=1.1e-10  Score=86.62  Aligned_cols=102  Identities=13%  Similarity=0.076  Sum_probs=85.0

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..+..++.++|..... +.++++.||++| ++|+.+.+.|.++++++.   ..+.|+.+|++...   .+++.|||.++ 
T Consensus         5 ~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~-   79 (111)
T 3uvt_A            5 STVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER---NICSKYSVRGY-   79 (111)
T ss_dssp             CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH---HHHHHTTCCSS-
T ss_pred             CcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH---hHHHhcCCCcc-
Confidence            3577899999998877 568899999999 999999999999999986   36999999999875   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      |+++++ ..+ .....+.|..+.+.|.+|+.+.
T Consensus        80 Pt~~~~-~~g-~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           80 PTLLLF-RGG-KKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             SEEEEE-ETT-EEEEEECSCCSHHHHHHHHHHH
T ss_pred             cEEEEE-eCC-cEEEeccCCcCHHHHHHHHHhc
Confidence            998544 433 2233458889999999999863

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.17  E-value=1.3e-10  Score=89.94  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=85.1

Q ss_pred             ceeecCccccccccc------------CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHh
Q 018164          103 LVTKLTDINSASVHS------------SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT  169 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~------------~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~  169 (360)
                      .+..++.++|...+.            .+.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++
T Consensus        10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~   86 (136)
T 2l5l_A           10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ---ELAG   86 (136)
T ss_dssp             SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHH
T ss_pred             ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCH---HHHH
Confidence            466777777766443            4568899999999 99999999999999999988999999999875   8999


Q ss_pred             hcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          170 LFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       170 ~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      .|||.+. |+++++-..+..  ..+.|..+.+.|.+|+++.+..
T Consensus        87 ~~~v~~~-Pt~~~~~~~G~~--~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           87 AFGIRSI-PSILFIPMEGKP--EMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HTTCCSS-CEEEEECSSSCC--EEEESCCCHHHHHHHHHHHHTS
T ss_pred             HcCCCCC-CEEEEECCCCcE--EEEeCCCCHHHHHHHHHHHhhc
Confidence            9999998 998544133322  2447889999999999998754

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.17  E-value=6.9e-11  Score=90.02  Aligned_cols=110  Identities=11%  Similarity=0.126  Sum_probs=85.5

Q ss_pred             HHHhhccCCceeecCcccccccccCCC-ceEEEEEEec---cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHh
Q 018164           94 QFLNYNKFPLVTKLTDINSASVHSSPI-KLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT  169 (360)
Q Consensus        94 ~fi~~~~~p~v~~l~~~~~~~~~~~~~-~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~  169 (360)
                      +.+..+..+   .+|.++|+..+..+. +.+|.|+++|   ++|+.+.+.+.+++++|.+++.|+.||.++++   .+..
T Consensus        10 rl~~~~g~~---~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~---~la~   83 (137)
T 2qsi_A           10 AAARPNAPT---LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER---GLMA   83 (137)
T ss_dssp             -------CE---EECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHH---HHHH
T ss_pred             HHHHhcCCc---ccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCH---HHHH
Confidence            333444444   778899988665554 8889999977   78999999999999999999999999999875   9999


Q ss_pred             hcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          170 LFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       170 ~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      .|||.+. |+++++.++....+  ..|-.+.+.|.++|+.+++
T Consensus        84 ~ygV~si-PTlilFkdG~~v~~--~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           84 RFGVAVC-PSLAVVQPERTLGV--IAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             HHTCCSS-SEEEEEECCEEEEE--EESCCCHHHHHHHHHHHHH
T ss_pred             HcCCccC-CEEEEEECCEEEEE--EeCCCCHHHHHHHHHHHhc
Confidence            9999999 99965555443333  3688899999999999884

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.17  E-value=8.4e-11  Score=91.71  Aligned_cols=84  Identities=12%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------------C-CC-CCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------------------------N-EH-PKLQ  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------------~-~~-~~~~  299 (360)
                      .+++++|.||++||++|+.+.+.+.++++.+... ++.++.++++.                         + .+ ..++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSD-SVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCS-SEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCC-CEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            6789999999999999999999999999999743 69999998864                         2 22 3579


Q ss_pred             CCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHH
Q 018164          300 VEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       300 i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                      +.++|+++++ ++|..  ...+.|..+.+.|.++|
T Consensus       112 v~~~P~~~lid~~G~i--~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEI--EKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCE--EEEEESCCCHHHHHHHH
T ss_pred             cCccCeEEEEcCCCcE--EEEEcCCcCHHHHHHhh
Confidence            9999999999 45544  34788999999999887

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.16  E-value=1.6e-10  Score=97.42  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             CCceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .+.+..+|.++|.. +...+.+++|.||++| ++|+.+.+.|.++++++++++.|+.+|++...   .+++.|||.++ |
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~-P   86 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-P   86 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCT---TTGGGGTCCSB-S
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCH---HHHHHcCCCcC-C
Confidence            45678999999987 5677888999999999 99999999999999999988999999999876   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCcc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                      +++++ ..+ .....+.|..+.+.|.+|++..+.+..
T Consensus        87 t~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           87 TLLLF-KNG-EVAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             EEEEE-ETT-EEEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             EEEEE-ECC-eEEEEeccccChHHHHHHHHhhccccc
Confidence            98655 433 223345788999999999999987654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.16  E-value=1.2e-10  Score=97.35  Aligned_cols=108  Identities=13%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .+.+..++.++|......+.+++|.||++| ++|..+.+.|.++++++.+++.|+.||++...   .+++.+||.++ |+
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-Pt  171 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR---MLCRMKGVNSY-PS  171 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH---HHHHHTTCCSS-SE
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccH---HHHHHcCCCcC-Ce
Confidence            456778899999887777888999999999 99999999999999999989999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      ++++ ..+ .....+.|..+.+.|.+|+...+...
T Consensus       172 ~~~~-~~G-~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          172 LFIF-RSG-MAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             EEEE-CTT-SCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             EEEE-ECC-CceeEecCCCCHHHHHHHHHHhCccc
Confidence            8655 333 22445588899999999999988654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.15  E-value=3.5e-11  Score=91.45  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             ceeecCcccccc-cccCCCceEEEEEEec-c--------------chHHHHHHHHHHHHhhcCceEEEEEeCCCcccchh
Q 018164          103 LVTKLTDINSAS-VHSSPIKLQVYVFAKA-D--------------DLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKP  166 (360)
Q Consensus       103 ~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~--------------~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~  166 (360)
                      .+.+++.++|.. +...+.++++.||++| +              +|+.+.+.|.++++++.+++.|+.+|++...   .
T Consensus         4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~---~   80 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---G   80 (123)
T ss_dssp             SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT---T
T ss_pred             ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH---H
Confidence            467889999975 5567788999999999 9              9999999999999999988999999999875   8


Q ss_pred             HHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          167 FLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       167 l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++.|||.++ |+++++ ..+. ....+.|..+.+.|.+|++..+
T Consensus        81 l~~~~~v~~~-Pt~~~~-~~G~-~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGI-PTLLLF-KNGE-VAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBS-SEEEEE-ESSS-EEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCcc-CEEEEE-ECCE-EEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999 999655 3332 2334578889999999997654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.15  E-value=4.9e-11  Score=95.36  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCC---CCCCcEEEEEeCCCccCceEec
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQ---VEEYPTLLFYPAGDKANPIKVS  321 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~---i~~~Pti~~~~~g~~~~~~~~~  321 (360)
                      .+++++|.|||+||++|+.+.|.+++++..+.   ++.|..+|.+.+ +. ..+.   +.++||++++.+|++. ..++ 
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~-~~~~-  127 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNL-LGRF-  127 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCE-EEEE-
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCE-EEEE-
Confidence            46789999999999999999999999998764   689999998877 33 4564   9999999999886453 2244 


Q ss_pred             CCCCHHHHHHHHHH
Q 018164          322 ARSSSKNIAAFIKE  335 (360)
Q Consensus       322 g~~~~~~l~~~i~~  335 (360)
                      |.+. ..+.+.+.+
T Consensus       128 g~~p-~~~~~~i~~  140 (167)
T 1z6n_A          128 VERP-QAVLDGGPQ  140 (167)
T ss_dssp             ESSC-HHHHHHCHH
T ss_pred             cCCC-HHHHHhHHH
Confidence            4433 344445444

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.14  E-value=7.1e-11  Score=94.38  Aligned_cols=105  Identities=17%  Similarity=0.303  Sum_probs=79.0

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------------------
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA------------------  292 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------------------  292 (360)
                      .+..++++.+.... ..+++++|.||++||++|+.+.|.+.++++.++.. ++.+..+.++.                  
T Consensus        22 ~l~~~~g~~~~~~~-~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYL-KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGC-CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHH-hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            45667777666543 35689999999999999999999999999987543 56666666431                  


Q ss_pred             ----------C-CC-CCCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          293 ----------N-EH-PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       293 ----------~-~~-~~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                                + .+ ..+++.++|+++++ ++|..  ..++.|..+.+.|.++|++.+..
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDV--QRIVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCE--EEEEESCCCHHHHHHHHHCTTCC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCcE--EEEEcCCCCHHHHHHHHHHHHHH
Confidence                      1 11 13588899999999 55544  34678999999999999987653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.14  E-value=1.7e-10  Score=91.14  Aligned_cols=88  Identities=13%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC---------------------------CC-CC-CCCC
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS---------------------------AN-EH-PKLQ  299 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------------------------~~-~~-~~~~  299 (360)
                      ++++|.||++||++|..+.+.+.++++.+    ++.++.|+++                           .+ .+ ..++
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999999    3677777772                           22 22 3579


Q ss_pred             CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       300 i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +.++|+++++..++++ ...+.|..+.+.|.++|++..+...
T Consensus       107 v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKV-VALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             BCSSCEEEEECTTSEE-EEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             CCcccEEEEECCCCCE-EEEEcCCCCHHHHHHHHHhccCccc
Confidence            9999999998544443 3578899999999999999987654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.14  E-value=1.3e-10  Score=88.90  Aligned_cols=103  Identities=13%  Similarity=0.209  Sum_probs=82.7

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .|.+...+.+.+......+++++|.||++| ++|+.+.+.+.++++++++++.|+.||++...   .+++.|||.++ |+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~-Pt   99 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE---SLARKFSVKSL-PT   99 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH---HHHHHTTCCSS-SE
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcCCCCc-CE
Confidence            455555555556666667788999999999 99999999999999999988999999999875   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      ++++ ..+ .....+.|..+.+.|.+|+++
T Consensus       100 ~~~~-~~G-~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          100 IILL-KNK-TMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEE-ETT-EEEEEESSCCCHHHHHHHHTT
T ss_pred             EEEE-ECC-EEEEEecCCCCHHHHHHHHHh
Confidence            9655 433 233345788999999999864

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.13  E-value=3.1e-10  Score=90.22  Aligned_cols=92  Identities=15%  Similarity=0.246  Sum_probs=74.2

Q ss_pred             cCccEEEEEeCCCChhhHH-HHHHHHHHHHHhcCCCCEEEEEEeCC----------------------------CC-C--
Q 018164          247 SHKDVLLEVYTPWCVTCET-TSKQIEKLAKHFKGLDNLVIAKIDAS----------------------------AN-E--  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~~~~~id~~----------------------------~~-~--  294 (360)
                      .+++++|.||++||++|.. +.|.+.++++.+++. ++.++.++++                            .. .  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            4789999999999999999 699999999999763 5888888762                            11 1  


Q ss_pred             ----C-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          295 ----H-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       295 ----~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                          + ..+++.++|+++++..++++ ..++.|..+.+.|.++|++.+...
T Consensus       108 ~~~~~~~~~~v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~i~~ll~~~  157 (160)
T 3lor_A          108 RIPSTMKKYRLEGTPSIILADRKGRI-RQVQFGQVDDFVLGLLLGSLLSET  157 (160)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSBE-EEEEESCCCHHHHHHHHHHHHTCC
T ss_pred             hhhhHHHhcccCccceEEEECCCCcE-EEEecCcCCHHHHHHHHHHHHhcc
Confidence                2 24689999999999654443 357789999999999999988753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.13  E-value=1.6e-10  Score=90.98  Aligned_cols=94  Identities=16%  Similarity=0.364  Sum_probs=76.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC------------------------C-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------------------------H-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  301 (360)
                      .+++++|.||++||++|..+.+.+.++.+.+.+ .++.++.++++.+.                        + ..+++.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT-SSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc-CCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            468999999999999999999999999999875 26999999887752                        1 246899


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      ++|+++++..++++ ..++.|..+.+.|.++|++.++....
T Consensus       108 ~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A          108 GIPRFILLDRDGKI-ISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             SSCCEEEECTTSCE-EESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             CCCEEEEECCCCeE-EEccCCCCCHHHHHHHHHHHhccccc
Confidence            99999999744343 23567888999999999999886654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.13  E-value=4.3e-10  Score=85.68  Aligned_cols=106  Identities=10%  Similarity=0.046  Sum_probs=84.8

Q ss_pred             ceeecCccccc-----ccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEe--CCCcccchhHHhhcCCC
Q 018164          103 LVTKLTDINSA-----SVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVD--IADEDLAKPFLTLFGLE  174 (360)
Q Consensus       103 ~v~~l~~~~~~-----~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd--~~~~~~~~~l~~~~gi~  174 (360)
                      .+..++..++.     .....+.++++.||++| +.|+.+.+.+.++++++.+++.|+.+|  ++...   .+++.||+.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~---~~~~~~~v~   81 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNI---DLAYKYDAN   81 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHH---HHHHHTTCC
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchH---HHHHHcCCc
Confidence            34566666666     45556778899999999 999999999999999998789999999  77654   899999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +. |+++ +++.++.....+.|..+.+.|.+|++..+..
T Consensus        82 ~~-Pt~~-~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           82 IV-PTTV-FLDKEGNKFYVHQGLMRKNNIETILNSLGVK  118 (126)
T ss_dssp             SS-SEEE-EECTTCCEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred             ce-eEEE-EECCCCCEEEEecCCCCHHHHHHHHHHHhcc
Confidence            98 9985 5553333334457889999999999998753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.13  E-value=2e-10  Score=84.53  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=80.7

Q ss_pred             eeecCc-cccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLTD-INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~~-~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +.+++. +++...+.  .+.+.++.||++| +.|+.+.+.+.++++++++++.|+.+|++...   .+++.+|+.+. |+
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt   77 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE---DIAMEYNISSM-PT   77 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTTCCSS-SE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchH---HHHHHcCCCcc-cE
Confidence            456666 77777665  6778899999999 99999999999999999878999999999775   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      ++++ ..+. ....+.| .+.+.|.+|++++
T Consensus        78 ~~~~-~~G~-~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           78 FVFL-KNGV-KVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEE-ETTE-EEEEEES-CCHHHHHHHHHHT
T ss_pred             EEEE-cCCc-EEEEEcC-CCHHHHHHHHHHh
Confidence            8544 4332 2333467 7889999999875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.13  E-value=1.4e-10  Score=88.23  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=83.8

Q ss_pred             eeecCc-ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~-~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +.+++. ++|...+..+.++++.||++| +.|+.+.+.|.++++++. .+.|+.+|++...   .+++.|+|.+. |+++
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~v~~~-Pt~~   95 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS---EIVSKCRVLQL-PTFI   95 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTTCCSS-SEEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCH---HHHHHcCCCcc-cEEE
Confidence            677888 888887777888999999999 999999999999999996 5999999999875   89999999999 9985


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++ ..+. ....+.| .+.+.|.+|++.+++
T Consensus        96 i~-~~G~-~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           96 IA-RSGK-MLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EE-ETTE-EEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EE-eCCe-EEEEEeC-CCHHHHHHHHHHHhc
Confidence            44 4332 2223456 688999999999875

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.12  E-value=3.7e-10  Score=89.58  Aligned_cols=92  Identities=16%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             cCccEEEEEeCCCChhhHHH-HHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------CC---
Q 018164          247 SHKDVLLEVYTPWCVTCETT-SKQIEKLAKHFKGLDNLVIAKIDASA----------------------------NE---  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~----------------------------~~---  294 (360)
                      .+++++|.||++||++|... .|.+.++++.+++. ++.+..++++.                            ..   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            46899999999999999995 99999999999753 68888888631                            11   


Q ss_pred             ---C-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          295 ---H-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       295 ---~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                         + ..+++.++|+++++..++++ ..++.|..+.+.|.++|++.+...
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~i~~ll~~~  154 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDL-RAHHFGDVSELLLGAEIATLLGEA  154 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEE-EEEEESCCCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCE-EEEEeCCCCHHHHHHHHHHHhccC
Confidence               1 24689999999999554454 357789999999999999988754

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.12  E-value=8.5e-10  Score=90.09  Aligned_cols=136  Identities=15%  Similarity=0.291  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHhcCccCCccc---cCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHH
Q 018164          199 TPSNIEEFCSRLLHGTLTPYLK---SQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAK  275 (360)
Q Consensus       199 ~~~~i~~fi~~~~~g~~~~~~~---se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~  275 (360)
                      ....+.+|+..+..|.+.....   ..+.|.   -.+..++++.+.-- .-.+++++|.||++||++|....+.+.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~---f~l~~~~G~~~~l~-~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~   87 (186)
T 1jfu_A           12 AAVATAQKIAPLAHGEVAALTMASAPLKLPD---LAFEDADGKPKKLS-DFRGKTLLVNLWATWCVPCRKEMPALDELQG   87 (186)
T ss_dssp             HHHHHHHHHGGGCCGGGTTCEECCSCCBCCC---CEEECTTSCEEEGG-GGTTSEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcchhhcchhhhhccccCCCcCCC---cEeEcCCCCEeeHH-HcCCCEEEEEEEeCCCHhHHHHHHHHHHHHH
Confidence            4567888898888887765533   233332   22333344333221 1146799999999999999999999999999


Q ss_pred             HhcCCCCEEEEEEeCCCCCC-------CCCCC-----------------------CCCcEEEEEeCCCccCceEecCCCC
Q 018164          276 HFKGLDNLVIAKIDASANEH-------PKLQV-----------------------EEYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       276 ~~~~~~~~~~~~id~~~~~~-------~~~~i-----------------------~~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                      .+++ .++.++.|+++....       .++++                       .++|+++++..++++ ..++.|..+
T Consensus        88 ~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i-~~~~~g~~~  165 (186)
T 1jfu_A           88 KLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE-IATIAGPAE  165 (186)
T ss_dssp             HHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBE-EEEEESCCC
T ss_pred             Hhcc-CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCE-EEEEecCCc
Confidence            9974 278898888876411       12233                       289999999544443 346777654


Q ss_pred             --HHHHHHHHHHhcCCC
Q 018164          326 --SKNIAAFIKEQLKEK  340 (360)
Q Consensus       326 --~~~l~~~i~~~~~~~  340 (360)
                        .+.+.++|++.+..+
T Consensus       166 ~~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          166 WASEDALKLIRAATGKA  182 (186)
T ss_dssp             TTSHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHhccc
Confidence              789999999987643

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.12  E-value=2.7e-10  Score=89.84  Aligned_cols=95  Identities=16%  Similarity=0.251  Sum_probs=74.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------C-CC-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------N-EH-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~-~~-~~~~i~  301 (360)
                      .+++++|.||++||++|+.+.+.+.++++.+.+. ++.+..++.+.                       + .+ ..+++.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            4789999999999999999999999999999763 58887776431                       1 12 245899


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCCC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQS  343 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  343 (360)
                      ++|+++++..++++ ...+.|..+.+.|.++|++.+.....+
T Consensus       106 ~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ll~~~~~~  146 (153)
T 2l5o_A          106 VYPTSVLIGKKGEI-LKTYVGEPDFGKLYQEIDTAWRNSDAE  146 (153)
T ss_dssp             SSSEEEEECSSSCC-CEEEESSCCHHHHHHHHHHHHHCCSSC
T ss_pred             ccCeEEEECCCCcE-EEEEcCCCCHHHHHHHHHHHHHhhhhc
Confidence            99999999443343 347889999999999999998766543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.12  E-value=1.5e-10  Score=86.09  Aligned_cols=102  Identities=13%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             eeec-CcccccccccC----CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          104 VTKL-TDINSASVHSS----PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       104 v~~l-~~~~~~~~~~~----~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      +..+ +.+++...+..    +.++++.||++| +.|+.+.+.|.++++++.+++.|+.+|++...   .+++.||+.+. 
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-   79 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---AVAEAAGITAM-   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---HHHHHHTCCBS-
T ss_pred             EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchH---HHHHHcCCCcc-
Confidence            4455 55677776654    678899999999 99999999999999999978999999999775   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++ ..+. ....+.|. +.+.|.+|++.+++
T Consensus        80 Pt~~~~-~~G~-~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           80 PTFHVY-KDGV-KADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEE-ETTE-EEEEEESC-CHHHHHHHHHHHHC
T ss_pred             cEEEEE-ECCe-EEEEEcCC-CHHHHHHHHHHHhc
Confidence            997544 4332 23334676 99999999998874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=1.9e-10  Score=100.87  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=90.0

Q ss_pred             cCCceeecCcccccccccC--CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          100 KFPLVTKLTDINSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~~--~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..+.|.++|.++|..++..  +.+++|.||++| ++|+.+.+.|.++++++++++.|+.||++..+   .+++.|||.++
T Consensus         5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~   81 (287)
T 3qou_A            5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ---MIAAQFGLRAI   81 (287)
T ss_dssp             -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH---HHHHTTTCCSS
T ss_pred             CCCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH---HHHHHcCCCCC
Confidence            3577999999999997754  678999999999 99999999999999999999999999999875   99999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                       |+++++ ..+. ....+.|..+.+.+..|+...+
T Consensus        82 -Pt~~~~-~~G~-~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           82 -PTVYLF-QNGQ-PVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             -SEEEEE-ETTE-EEEEEESCCCHHHHHHHHHHHS
T ss_pred             -CeEEEE-ECCE-EEEEeeCCCCHHHHHHHHHHHc
Confidence             999655 3332 2223478899999999999876

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.11  E-value=2.2e-10  Score=86.68  Aligned_cols=106  Identities=11%  Similarity=0.095  Sum_probs=85.8

Q ss_pred             cCCceeecCccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          100 KFPLVTKLTDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      ..+.+..++.++|...+.    .+.+.++.||++| +.|+.+.+.|.++++++.+ +.|+.+|++...   .+++.||+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~---~~~~~~~v~   86 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELK---PIAEQFSVE   86 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTTCC
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCH---HHHHHcCCC
Confidence            346677888888887654    4678899999999 9999999999999999988 999999999875   899999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +. |+++++ ..+. ....+.|.. .+.|.+|++.++.+
T Consensus        87 ~~-Pt~~~~-~~G~-~~~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           87 AM-PTFLFM-KEGD-VKDRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             SS-SEEEEE-ETTE-EEEEEESSC-HHHHHHHHHHHHSC
T ss_pred             cc-cEEEEE-eCCE-EEEEEeCcC-HHHHHHHHHHHhcc
Confidence            99 998544 4332 233446777 99999999998753

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.10  E-value=5.1e-10  Score=82.56  Aligned_cols=98  Identities=11%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             ecCcccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          106 KLTDINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       106 ~l~~~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      .-+.++|...+  ..+.+.++.||++| ++|+.+.+.|.++++++. ++.|+.+|++...   .+++.||+.+. |++++
T Consensus         6 i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~~   80 (107)
T 1gh2_A            6 VGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQ---GTAATNNISAT-PTFQF   80 (107)
T ss_dssp             ECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTTCCSS-SEEEE
T ss_pred             ecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCH---HHHHhcCCCcc-cEEEE
Confidence            34667888777  46778899999999 999999999999999995 5999999999775   89999999999 99865


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      + ..+. ....+.| .+.+.|.+|+++++
T Consensus        81 ~-~~G~-~~~~~~G-~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           81 F-RNKV-RIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             E-ETTE-EEEEEES-SCHHHHHHHHHHHH
T ss_pred             E-ECCe-EEEEEeC-CCHHHHHHHHHHhc
Confidence            5 3332 2223356 45566999998875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.10  E-value=2.7e-10  Score=90.06  Aligned_cols=126  Identities=10%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             CCceeecC-cccccccccC--CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          101 FPLVTKLT-DINSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       101 ~p~v~~l~-~~~~~~~~~~--~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ...+..++ .+++...+..  +.++++.||++| +.|+.+.+.|.++++++. ++.|+.+|++...   .+++.|||.++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~---~l~~~~~v~~~   86 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVP---EVSEKYEISSV   86 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTTCCSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCH---HHHHHcCCCCC
Confidence            34455565 4777776655  778899999999 999999999999999985 5999999999875   89999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV  244 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~  244 (360)
                       |+++++ ..+. ....+.| .+.+.|.+|+++++.....          .....+..++..+|+++.
T Consensus        87 -Pt~~~~-~~G~-~~~~~~G-~~~~~l~~~i~~~l~~~~~----------~~~~~~~~l~~~~f~~~~  140 (153)
T 2wz9_A           87 -PTFLFF-KNSQ-KIDRLDG-AHAPELTKKVQRHASSGSF----------LPSAKVKVDTDPNSSSVD  140 (153)
T ss_dssp             -SEEEEE-ETTE-EEEEEES-SCHHHHHHHHHHHSCTTSS----------CSCCCCCCC---------
T ss_pred             -CEEEEE-ECCE-EEEEEeC-CCHHHHHHHHHHHhccccC----------CCccccccCCCCChhhHH
Confidence             999644 4332 2223355 5788999999998864321          122346667788888865

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.10  E-value=3.2e-10  Score=87.35  Aligned_cols=86  Identities=21%  Similarity=0.374  Sum_probs=69.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------------------CC-C
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------------------EH-P  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------------~~-~  296 (360)
                      .+++++|.||++||++|..+.+.+.++++.+..  ++.++.+++...                             .+ .
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            468999999999999999999999999998654  788888864321                             11 2


Q ss_pred             CCCCCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          297 KLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      .+++.++|+++++ ++|+.  ..++.|..+.+.|.++|++.
T Consensus        99 ~~~v~~~P~~~lid~~G~i--~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVRSYPTQAFIDKEGKL--VKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCCSSSEEEEECTTCCE--EEEEESCCCHHHHHHHHHHC
T ss_pred             HcCcccCCeEEEECCCCcE--EEeecCCCcHHHHHHHHHhh
Confidence            4689999999999 45544  34788999999999999864

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.09  E-value=5.3e-10  Score=83.07  Aligned_cols=103  Identities=11%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             CCceeecCccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCCC
Q 018164          101 FPLVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEES  176 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~~  176 (360)
                      ...|..++.++|...+.  .+.++++.||++| ++|+.+.+.|.++++++++ +.|+.+|++ ...   .+++.||+.+.
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~---~~~~~~~v~~~   79 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENK---TLAKELGIRVV   79 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTH---HHHHHHCCSBS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchH---HHHHHcCCCee
Confidence            45688899999988775  4678899999999 9999999999999999986 999999998 443   89999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                       |+++ +...+. ....+.|. +.+.|.++++.++
T Consensus        80 -Pt~~-~~~~G~-~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           80 -PTFK-ILKENS-VVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             -SEEE-EESSSS-EEEEEESS-CHHHHHHHHHHHH
T ss_pred             -eEEE-EEeCCc-EEEEEcCC-CHHHHHHHHHHhh
Confidence             9964 443332 22233565 5889999998865

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.08  E-value=5.6e-10  Score=86.84  Aligned_cols=87  Identities=16%  Similarity=0.305  Sum_probs=68.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHH---HHHHhcCCCCEEEEEEeCCCC-C-------------------------CCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEK---LAKHFKGLDNLVIAKIDASAN-E-------------------------HPK  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~~~~~~id~~~~-~-------------------------~~~  297 (360)
                      .+++++|.||++||++|....|.+.+   +.+.+++. ++.+..++++.+ +                         ...
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG-TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT-SEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC-CeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            46899999999999999999999988   88888652 689999988754 1                         226


Q ss_pred             CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +++.++|+++++..++++   .+ +..+.+.|.++|+++.+
T Consensus       105 ~~v~~~P~~~lid~~G~i---~~-~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A          105 YDIRATPTIYLLDGRKRV---IL-KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             SCCCSSSEEEEECTTCBE---EE-CSCCHHHHHHHHHC---
T ss_pred             cCCCCCCeEEEECCCCCE---Ee-cCCCHHHHHHHHHHHcc
Confidence            799999999999655443   33 67889999999987653

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.08  E-value=5.8e-10  Score=94.31  Aligned_cols=106  Identities=10%  Similarity=0.045  Sum_probs=84.1

Q ss_pred             CCceeecCcccccccccCCCceEEEEEE--eccchHHHHHHHHHHHHhhc--CceEEEEEeCCC--cccchhHHhhcCCC
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFA--KADDLKSLLEPLEDIARNFK--GKIMFTAVDIAD--EDLAKPFLTLFGLE  174 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~--~~~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~--~~~~~~l~~~~gi~  174 (360)
                      ...|..++..+|+.++..+.+++|.||+  +|  |. +.|.|.++|..+.  +++.|+.||++.  ...+..+|+.|||+
T Consensus         4 ~~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pW--Cg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~   80 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPY--GE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   80 (240)
T ss_dssp             CTTCEECCTTHHHHHGGGCSEEEEEECCSSCC--SH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred             CCCceECCHHHHHHHHcCCCCEEEEEeCCCCC--Cc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence            3457889999999988777789999999  99  55 9999999999996  469999999543  11124899999999


Q ss_pred             --CCCCceEEEEeCCC-cccccCCCCCCHHHHHHHHHHHh
Q 018164          175 --ESKNTVVTAFDNKA-ISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       175 --~~~p~~~~~~~~~~-~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                        ++ |+++++ ..+. .....|.|.++.+.|.+|+++..
T Consensus        81 ~~~~-PTl~~f-~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           81 KESY-PVFYLF-RDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGGC-SEEEEE-ETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCC-CEEEEE-eCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence              88 999644 4433 23445689999999999999874

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.08  E-value=7.1e-11  Score=90.30  Aligned_cols=104  Identities=8%  Similarity=0.026  Sum_probs=86.9

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      -+..+|.++|+..+..+.+.+|.|+++|   ++|+.+.+.+.++|++|.++ +.|+.||.++++   .++..|||.+. |
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~---~lA~~ygV~sI-P   93 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSE---AIGDRFGAFRF-P   93 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHH---HHHHHHTCCSS-S
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCH---HHHHHcCCccC-C
Confidence            4558899999987766677888888887   78999999999999999999 999999999775   99999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++++.++....  ...|-.+.+.|.+||+.+++
T Consensus        94 TlilFk~G~~v~--~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           94 ATLVFTGGNYRG--VLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEEEETTEEEE--EEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEE--EEecCCCHHHHHHHHHHHhc
Confidence            996555443332  33688899999999999884

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.08  E-value=2.7e-10  Score=88.18  Aligned_cols=107  Identities=15%  Similarity=0.178  Sum_probs=83.4

Q ss_pred             eeecC-cccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLT-DINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~-~~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +..++ .++|+..+  ..+.+++|-|+++| ++|+.+.|.|.++|+++.+++.|+.||.++.+   +++..|+|... ||
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~---e~a~~y~V~si-PT   98 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVP---DFNTMYELYDP-VS   98 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTTTTCCSS-EE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCH---HHHHHcCCCCC-CE
Confidence            33444 36676644  35678899999999 99999999999999999999999999999887   99999999988 99


Q ss_pred             eEEEEeCCCcc-------cccCCCCCC-HHHHHHHHHHHhcCc
Q 018164          180 VVTAFDNKAIS-------KFLLESDLT-PSNIEEFCSRLLHGT  214 (360)
Q Consensus       180 ~~~~~~~~~~~-------~y~~~~~~~-~~~i~~fi~~~~~g~  214 (360)
                      ++++.+++...       .-+..|-.+ .+.|.++|+.++.|.
T Consensus        99 ~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a  141 (160)
T 2av4_A           99 VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA  141 (160)
T ss_dssp             EEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence            86555443221       013467666 889999999887553

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.07  E-value=8.9e-10  Score=85.76  Aligned_cols=83  Identities=13%  Similarity=0.295  Sum_probs=66.1

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHH---HHHHhcCCCCEEEEEEeCCCC-C-------------------------CCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEK---LAKHFKGLDNLVIAKIDASAN-E-------------------------HPKL  298 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~---la~~~~~~~~~~~~~id~~~~-~-------------------------~~~~  298 (360)
                      .++++|.||++||++|+...|.+.+   +.+.+++ .++.+..++.+.+ +                         ...+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            5899999999999999999999999   9999975 3789998988765 1                         2356


Q ss_pred             CCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       299 ~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      ++.++|+++++.+++++   .+.+ .+.+.|.+||++
T Consensus       110 ~v~~~P~~~lid~~G~i---~~~~-~~~~~l~~~l~e  142 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTV---LLKD-ATLQKVEQYLAE  142 (142)
T ss_dssp             CCTTCSEEEEECTTCBE---EEEE-ECHHHHHHHHHC
T ss_pred             CCCcCCeEEEECCCCcE---EecC-CCHHHHHHHHhC
Confidence            89999999999665553   3332 357888888863

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.07  E-value=2.8e-10  Score=83.53  Aligned_cols=96  Identities=10%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             Cccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          108 TDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       108 ~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      +.+++...+.  .+.+.++.||++| ++|+.+.+.+.++++++++ +.|+.+|++...   .+++.+|+.+. |+++++ 
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~~~-   80 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ---DVASESEVKSM-PTFQFF-   80 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCH---HHHHHTTCCBS-SEEEEE-
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhH---HHHHHcCCCcC-cEEEEE-
Confidence            4555666655  5778899999999 9999999999999999987 999999999875   89999999999 999655 


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ..+. ....+.|. +.+.|.+|+++.+
T Consensus        81 ~~g~-~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           81 KKGQ-KVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHHC
T ss_pred             ECCe-EEEEEeCC-CHHHHHHHHHHhC
Confidence            4332 22334677 9999999998763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.07  E-value=2.4e-10  Score=85.12  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=84.3

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .+....++.++|...+..+.+.+++|+++| +.|+.+.+.+.++++++.+ +.|+.+|++...   .+++.+|+.+. |+
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~---~~~~~~~v~~~-Pt   82 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVS---EVTEKENITSM-PT   82 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTH---HHHHHTTCCSS-SE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCCCH---HHHHHcCCCcc-cE
Confidence            345677888899988877888999999999 9999999999999999985 999999999775   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++ +..+ .....+.|. +.+.|.+|++.++
T Consensus        83 ~~~-~~~G-~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           83 FKV-YKNG-SSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEE-EETT-EEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEE-EECC-cEEEEEeCC-CHHHHHHHHHHhh
Confidence            754 4433 223334677 9999999998754

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.06  E-value=8.4e-10  Score=82.10  Aligned_cols=102  Identities=13%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             eeecCc-ccccccccC---CCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          104 VTKLTD-INSASVHSS---PIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       104 v~~l~~-~~~~~~~~~---~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      |..++. ++|...+..   +.+.++.||++| ++|+.+.+.|.++++++. ..+.|+.+|++...   .+++.+|+.+. 
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-   77 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENS---EISELFEISAV-   77 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCH---HHHHHTTCCSS-
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCH---HHHHHcCCCcc-
Confidence            456776 788877764   678899999999 999999999999999963 45999999999875   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++ ..+. ....+.|. ..+.|.+++++++.
T Consensus        78 Pt~~~~-~~G~-~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           78 PYFIII-HKGT-ILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             SEEEEE-ETTE-EEEEECSC-CHHHHHHHHHHHHH
T ss_pred             cEEEEE-ECCE-EEEEecCC-CHHHHHHHHHHHHh
Confidence            998544 4332 22334565 55679999998764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.06  E-value=4.2e-10  Score=83.40  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             eecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          105 TKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       105 ~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      ...+.++|+.....+.++++.||++| +.|+.+.+.|.++++++.+ +.|+.+|++...   .+++.+||.+. |+++++
T Consensus        10 ~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~~   84 (109)
T 3f3q_A           10 QFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELG---DVAQKNEVSAM-PTLLLF   84 (109)
T ss_dssp             ECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTTCCSS-SEEEEE
T ss_pred             CCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHcCCCcc-CEEEEE
Confidence            45566778888888889999999999 9999999999999999986 999999999875   89999999999 998644


Q ss_pred             EeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          184 FDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       184 ~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                       ..+ .....+.|. +.+.|.++++++
T Consensus        85 -~~G-~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 -KNG-KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             -ETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             -ECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence             433 222334565 779999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.05  E-value=5.4e-10  Score=81.79  Aligned_cols=99  Identities=13%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             eecCc-cccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          105 TKLTD-INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       105 ~~l~~-~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+++. +++...+.  .+.++++.||++| +.|+.+.+.+.++++++. .+.|+.+|++..+   .+++.+|+.+. |++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~   76 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNE---EAAAKYSVTAM-PTF   76 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTTCCSS-SEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCH---HHHHHcCCccc-cEE
Confidence            34555 66777665  5678889999999 999999999999999997 5999999999775   89999999998 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      + ++..+. ....+.| .+.+.|.+|+++++
T Consensus        77 ~-~~~~g~-~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           77 V-FIKDGK-EVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             E-EEETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             E-EEeCCc-EEEEEeC-CCHHHHHHHHHhhC
Confidence            5 444332 2233456 68999999998763

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.05  E-value=5.8e-10  Score=87.26  Aligned_cols=87  Identities=18%  Similarity=0.390  Sum_probs=68.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHh-cCCCCEEEEEEeCCCCC--------------------------C-CCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDASANE--------------------------H-PKL  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~-~~~~~~~~~~id~~~~~--------------------------~-~~~  298 (360)
                      .+++++|.||++||++|+.+.|.+.++++.+ .+ .++.++.++++...                          + ..+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN-KNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC-TTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            4689999999999999999999999999999 54 36999999887632                          2 357


Q ss_pred             CCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       299 ~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++.++|+++++..++++   .+... +.+.+.++|.+.+.
T Consensus       111 ~v~~~P~~~lid~~G~i---~~~~~-~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          111 AILTLPTNILLSPTGKI---LARDI-QGEALTGKLKELLK  146 (148)
T ss_dssp             TCCSSSEEEEECTTSBE---EEESC-CHHHHHHHHHHHC-
T ss_pred             CCCCcCEEEEECCCCeE---EEecC-CHHHHHHHHHHHHc
Confidence            99999999999544442   23323 89999999998764

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.05  E-value=1.5e-10  Score=84.52  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHH
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSK  327 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~  327 (360)
                      ..++.|+++||+.|+.+.+.+++++..+.    +.+..+|++.+ ++ .++++. +|++++|.+|+.    ...|..+.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~----v~~g~~~~~  100 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKE----LCHYFLDSD  100 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEE----EECSSCCCH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEE----EEecCCCHH
Confidence            56899999999999999999999998863    78889999987 44 367886 999999988754    246888999


Q ss_pred             HHHHHH
Q 018164          328 NIAAFI  333 (360)
Q Consensus       328 ~l~~~i  333 (360)
                      .|.+||
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999887

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.05  E-value=4.5e-10  Score=84.93  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=82.4

Q ss_pred             ceeecCc-ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          103 LVTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       103 ~v~~l~~-~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      .+..++. ++|...+..+.+.+++||++| +.|+.+.+.|.++++++.++ +.|+.+|++...   .+++.+|+.+. |+
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~---~~~~~~~v~~~-Pt   91 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS---QIAQEVGIRAM-PT   91 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCH---HHHHHHTCCSS-SE
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCH---HHHHHcCCCcc-cE
Confidence            3444444 778877777888999999999 99999999999999999876 999999999875   89999999998 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++++ ..+ .....+.|. +.+.|.+|++..+
T Consensus        92 ~~~~-~~G-~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           92 FVFF-KNG-QKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEE-ETT-EEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEE-ECC-eEEeeEcCC-CHHHHHHHHHHhh
Confidence            8544 433 223334676 9999999998875

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.04  E-value=3.6e-10  Score=90.70  Aligned_cols=97  Identities=19%  Similarity=0.327  Sum_probs=69.6

Q ss_pred             cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------
Q 018164          236 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------  292 (360)
Q Consensus       236 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------  292 (360)
                      ++..+.......+++++|.||++||++|+.+.|.+.++++.     ++.++.++++.                       
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDG  113 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECc
Confidence            45555433334678999999999999999999999999875     35566666432                       


Q ss_pred             C-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          293 N-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       293 ~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      + .+ ..+++.++|+++++..++++ ..++.|..+.+.+.++|++.+.
T Consensus       114 ~~~~~~~~~v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          114 DGMLGLDLGVYGAPETFLIDGNGII-RYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             TCHHHHHHTCCSSSEEEEECTTSBE-EEEEESCCCHHHHHHTTHHHHH
T ss_pred             chHHHHHcCccccCEEEEECCCCeE-EEEEeCCCCHHHHHHHHHHHHH
Confidence            1 11 24589999977766544343 3467899999999999988764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.04  E-value=5.7e-10  Score=90.91  Aligned_cols=90  Identities=12%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCE------EEEEEeCCC-C--CCCCC-------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNL------VIAKIDASA-N--EHPKL-------------------  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~------~~~~id~~~-~--~~~~~-------------------  298 (360)
                      ..++++|.||++||++|..+.|.+.++++.+++. ++      .|+.|+++. +  .+..+                   
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            4689999999999999999999999999998753 36      999999887 3  12122                   


Q ss_pred             ------CCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          299 ------QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       299 ------~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                            ++.++|+++++..+.++ ..++.|..+.+.|.++|++.+.
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRP-AAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCE-EEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCeEEEECCCCcE-EEEEcCCCCHHHHHHHHHHHHh
Confidence                  57889988877444343 3468899999999999998764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.03  E-value=7e-10  Score=83.28  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             eeecCc-cccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCc
Q 018164          104 VTKLTD-INSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       104 v~~l~~-~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~  179 (360)
                      +.+++. +++...+.  .+.++++.||++| +.|+.+.+.|.++++++  ++.|+.+|++...   .+++.+|+.+. |+
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~---~~~~~~~v~~~-Pt   88 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLE---ETARKYNISAM-PT   88 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSH---HHHHHTTCCSS-SE
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccH---HHHHHcCCCcc-ce
Confidence            667777 77877666  6778899999999 99999999999999999  6999999999775   89999999999 99


Q ss_pred             eEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          180 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++++ ..+. ....+.| .+.+.|.+++++++
T Consensus        89 ~~~~-~~G~-~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           89 FIAI-KNGE-KVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEE-ETTE-EEEEEES-SCHHHHHHHHHHHC
T ss_pred             EEEE-eCCc-EEEEEeC-CCHHHHHHHHHHhC
Confidence            8544 4332 2233456 68899999998753

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.03  E-value=4.9e-10  Score=83.20  Aligned_cols=102  Identities=12%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      +..++.++| .....+.+.++.||++| +.|+.+.+.|.+++..+. ++.|+.+|++...   .+++.+|+.+. |++++
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~~   78 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARP---ELMKELGFERV-PTLVF   78 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCH---HHHHHTTCCSS-CEEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCH---HHHHHcCCccc-CEEEE
Confidence            456778888 55556678899999999 999999999999999987 5999999998765   89999999998 99965


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      + .++. ....+.|..+.+.|.+++..+.++
T Consensus        79 ~-~~G~-~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           79 I-RDGK-VAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             E-ESSS-EEEEEESCCCHHHHHHHHHTC---
T ss_pred             E-ECCE-EEEEEcCCCCHHHHHHHHHHHhhh
Confidence            5 3332 233346888999999999987653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.03  E-value=1.2e-09  Score=86.01  Aligned_cols=93  Identities=14%  Similarity=0.315  Sum_probs=72.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----------------------C-CCCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------------H-PKLQVEE  302 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------------~-~~~~i~~  302 (360)
                      .+++++|.||++||++|..+.+.+.++++.+.+. ++.++.++++.+.                       + ..+++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            4679999999999999999999999999999763 5889999887642                       1 2368999


Q ss_pred             CcEEEEEeCCCccCceEecCC--CCHHHHHHHHHHhcCCCC
Q 018164          303 YPTLLFYPAGDKANPIKVSAR--SSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~--~~~~~l~~~i~~~~~~~~  341 (360)
                      +|+++++..++++ ..++.|.  .+.+.|.++|++.++...
T Consensus       106 ~P~~~lid~~G~i-~~~~~g~~~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A          106 MPTSFLIDRNGKV-LLQHVGFRPADKEALEQQILAALGGNE  145 (152)
T ss_dssp             SSEEEEECTTSBE-EEEEESCCTTTHHHHHHHHHHHTC---
T ss_pred             CCeEEEECCCCCE-EEEEccCCCcCHHHHHHHHHHHHcccc
Confidence            9999999544443 3456674  456899999999987654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.03  E-value=2e-09  Score=102.36  Aligned_cols=177  Identities=12%  Similarity=0.094  Sum_probs=119.9

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      .+..+.+|.+. +.|+++...+++++..- .+|.+...+   ..   .       ... |++ .+...+......|-|-.
T Consensus        19 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~---~~---~-------~~~-p~~-~~~~~~~~~~i~f~g~p   82 (521)
T 1hyu_A           19 KPVELIATLDDSAKSAEIKELLAEIAELS-DKVTFKEDN---TL---P-------VRK-PSF-LITNPGSQQGPRFAGSP   82 (521)
T ss_dssp             SCEEEEEECCSSHHHHHHHHHHHHHHTTC-TTEEEEECT---TS---S-------SCS-SEE-EEECTTCCCSCEEESCC
T ss_pred             CCEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEcC---Cc---c-------cCC-CEE-EEecCCCcceEEEeccC
Confidence            34555666555 66888888888876554 467764321   11   1       222 776 45443333345556666


Q ss_pred             CHHHHHHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhc
Q 018164          199 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK  278 (360)
Q Consensus       199 ~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~  278 (360)
                      .-.++..|+...+.-.-               .-..++.+.++.+.....+..++.||++||++|+.+.|.+++++..+.
T Consensus        83 ~g~e~~s~~~~l~~~~~---------------~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~  147 (521)
T 1hyu_A           83 LGHEFTSLVLALLWTGG---------------HPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP  147 (521)
T ss_dssp             CGGGHHHHHHHHHHHTT---------------CCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT
T ss_pred             cchhHHHHHHHHHhhcC---------------CCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC
Confidence            66777888888653110               012344455555533345567999999999999999999999998864


Q ss_pred             CCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          279 GLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       279 ~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                         ++.+..+|.+.+ ++ .++++.++|++++  +|+.    ...|..+.+.|.+||.+.
T Consensus       148 ---~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~----~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          148 ---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE----FGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             ---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE----EEESCCCHHHHHHHHCCS
T ss_pred             ---ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEE----EecCCCCHHHHHHHHhhc
Confidence               699999999988 55 4789999999977  6644    245999999999998653

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.03  E-value=2.4e-10  Score=88.86  Aligned_cols=104  Identities=5%  Similarity=-0.002  Sum_probs=73.5

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec---cchHHHHHHHHHHHHhhcCceE--EEEEeCCCcccchhHHhhcCCCCCC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIM--FTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~i~--f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      -+..++.++|+..+..+...+++|+..|   ++|+.+.+.|.+++++| +++.  |+.||++..+   .+++.|||.+. 
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~---~la~~~~V~~i-   92 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSE---AIGDRFNVRRF-   92 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHH---HHHHTTTCCSS-
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCH---HHHHhcCCCcC-
Confidence            5778899999998876666667676655   68999999999999999 7888  9999999765   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      |+++++ ..+ .....+.|..+.+.|.+|++.++..
T Consensus        93 PT~~~f-k~G-~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           93 PATLVF-TDG-KLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             SEEEEE-SCC-----CEESCCCHHHHHHHHHHHHC-
T ss_pred             CeEEEE-eCC-EEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            999655 333 2233447888999999999998853

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.03  E-value=8.8e-10  Score=86.93  Aligned_cols=91  Identities=13%  Similarity=0.276  Sum_probs=70.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC------------------------C-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------------------------H-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  301 (360)
                      .+++++|.||++||++|..+.+.+.++++.+.+. ++.++.++++.+.                        + ..+++.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGK-PFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence            4689999999999999999999999999999763 6889989888740                        1 235899


Q ss_pred             CCcEEEEEeCCCccCceEecCCC--CHHHHHHHHHHhcCC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARS--SSKNIAAFIKEQLKE  339 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~--~~~~l~~~i~~~~~~  339 (360)
                      ++|+++++..++++ ..++.|..  +.+.+.++|++..+.
T Consensus       106 ~~P~~~lid~~G~i-~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          106 GVPETFVIDRHGVI-LKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             SBCEEEEECTTSBE-EEEEESCCCTTSHHHHHHHHTC---
T ss_pred             CCCeEEEECCCCcE-EEEEcCCCccccHHHHHHHHHHHHH
Confidence            99988888544443 34667764  778999999876654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.03  E-value=1.1e-09  Score=86.28  Aligned_cols=91  Identities=13%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------------------CC-CCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------------EH-PKLQ  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------------------~~-~~~~  299 (360)
                      .+++++|.||++||++|..+.|.+.++++.+.+. ++.++.++++..                          .+ ..++
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK-GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT-TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            4689999999999999999999999999999763 699999998862                          22 2579


Q ss_pred             CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCCC
Q 018164          300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       300 i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      +.++|+++++..++++ ..++   .+.+.+.++|++.+.....
T Consensus       107 v~~~P~~~lid~~G~i-~~~~---~~~~~l~~~l~~l~~~~~~  145 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKI-VAKE---LRGDDLYNTVEKFVNGAKE  145 (152)
T ss_dssp             CCSSCEEEEECTTSEE-EEEC---CCTTHHHHHHHHHHTSSSS
T ss_pred             CCcCCeEEEECCCCeE-EEee---CCHHHHHHHHHHHHhhccc
Confidence            9999999999544343 1222   3567889999888775543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.02  E-value=2.6e-10  Score=89.22  Aligned_cols=89  Identities=10%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-------------------------CC-CCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-------------------------HP-KLQ  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-------------------------~~-~~~  299 (360)
                      .+++++|.||++||++|..+.|.+.++.+.+.+. ++.++.++++.+ +                         +. .++
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            4689999999999999999999999999999763 599999998865 3                         22 358


Q ss_pred             CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          300 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       300 i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +.++|+++++..++++ ..++.|..+.+.+++.|.+.+
T Consensus       109 i~~~P~~~lid~~G~i-~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVI-IAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CCSSCEEEEECTTCBE-EEESCCGGGHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcE-EEecCCHHHHHHHHHHHHHHh
Confidence            8999999999544443 346678777787777777654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.01  E-value=1.4e-10  Score=81.75  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l  329 (360)
                      ++.|+++||+.|+.+.|.+++++..+       +..+|++.+ ++. +++++ +|++++ .+|+.+    . |..+.+.|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v----~-g~~~~~~L   68 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMGREL----D-WPFDAPRL   68 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEE----E-SCCCHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEE----e-CCCCHHHH
Confidence            78899999999999999998875321       678999988 553 67887 999988 666542    2 88899999


Q ss_pred             HHHHHHhcCC
Q 018164          330 AAFIKEQLKE  339 (360)
Q Consensus       330 ~~~i~~~~~~  339 (360)
                      .++|.+.+..
T Consensus        69 ~~~l~~~~~~   78 (87)
T 1ttz_A           69 RAWLDAAPHA   78 (87)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHHHH
Confidence            9999877654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.01  E-value=1.3e-10  Score=92.90  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             ccccccccccCccEEEEEeCCCChhhHHHHHH-H--HHHHHHhcCCCCEEEEEEeCCCC-CCC-CC--------CCCCCc
Q 018164          238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHP-KL--------QVEEYP  304 (360)
Q Consensus       238 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~-~~~-~~--------~i~~~P  304 (360)
                      +.|... ...+++++|.||++||++|+.|.+. |  .++++.+++  ++.++.+|.+.+ ++. .+        ++.++|
T Consensus        30 ea~~~A-~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~--~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~P  106 (173)
T 3ira_A           30 EAFEKA-RKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE--AFVSIKVDREERPDIDNIYMTVCQIILGRGGWP  106 (173)
T ss_dssp             HHHHHH-HHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH--HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSS
T ss_pred             HHHHHH-HHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh--cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCc
Confidence            445554 3568999999999999999999983 3  578888876  799999999887 553 34        899999


Q ss_pred             EEEEEe-CCCc
Q 018164          305 TLLFYP-AGDK  314 (360)
Q Consensus       305 ti~~~~-~g~~  314 (360)
                      +++++. +|+.
T Consensus       107 t~v~l~~dG~~  117 (173)
T 3ira_A          107 LNIIMTPGKKP  117 (173)
T ss_dssp             EEEEECTTSCE
T ss_pred             ceeeECCCCCc
Confidence            999996 5544

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.00  E-value=9e-10  Score=86.53  Aligned_cols=103  Identities=11%  Similarity=0.053  Sum_probs=83.2

Q ss_pred             cCcccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          107 LTDINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       107 l~~~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      .+.+++...+  ..+.+++|.||++| ++|+.+.+.|.++++++.+++.|+.||++..+   .+++.|+|.+. |+++ +
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~-Pt~~-~   83 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA---VYTQYFDISYI-PSTV-F   83 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCC---HHHHHTTCCSS-SEEE-E
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCH---HHHHHcCCCcc-CeEE-E
Confidence            3556677655  45778999999999 99999999999999999988999999999876   89999999999 9996 4


Q ss_pred             EeCCCcc--------cccCCC-CCCHHHHHHHHHHHhcCc
Q 018164          184 FDNKAIS--------KFLLES-DLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       184 ~~~~~~~--------~y~~~~-~~~~~~i~~fi~~~~~g~  214 (360)
                      +..+...        ...+.| ..+.+.|.++++..+.|.
T Consensus        84 ~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~  123 (149)
T 3gix_A           84 FFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA  123 (149)
T ss_dssp             EETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred             EECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence            4443211        034467 789999999999987553

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.99  E-value=2.1e-09  Score=81.51  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             cCCceeecCccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCC
Q 018164          100 KFPLVTKLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEE  175 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~  175 (360)
                      ....+..++.+++.....  .+.+.++.||++| ++|+.+.+.+.++++++++ +.|+.+|++ ..   ..+++.+|+.+
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~---~~~~~~~~v~~   91 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQEN---KTLAKELGIRV   91 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTT---HHHHHHHCCSS
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcch---HHHHHHcCCCe
Confidence            345688899999987665  5678899999999 9999999999999999985 999999998 44   38999999999


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      . |+++ ++..+. ....+.|.. .+.+.++++.++
T Consensus        92 ~-Pt~~-~~~~G~-~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           92 V-PTFK-ILKENS-VVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             S-SEEE-EEETTE-EEEEEESSC-HHHHHHHHHHHT
T ss_pred             e-eEEE-EEeCCc-EEEEEcCCC-HHHHHHHHHHhh
Confidence            9 9974 444332 222335654 889999998864

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.99  E-value=2.1e-09  Score=85.26  Aligned_cols=91  Identities=15%  Similarity=0.356  Sum_probs=70.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------C-CC-CCCCCCCCcE
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------------------N-EH-PKLQVEEYPT  305 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------~-~~-~~~~i~~~Pt  305 (360)
                      .+++++|.||++||++|..+.+.+.++++.+.+. ++.++.++++.                   + .+ ..+++.++|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG-DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT-SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC-CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcce
Confidence            4689999999999999999999999999999753 79999999876                   2 22 2568999999


Q ss_pred             EEEEeCCCccCceEecCC--CCHHHHHHHHHHhcCC
Q 018164          306 LLFYPAGDKANPIKVSAR--SSSKNIAAFIKEQLKE  339 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~--~~~~~l~~~i~~~~~~  339 (360)
                      ++++..++++ ..++.|.  .+.+++++.+.++.+.
T Consensus       119 ~~lid~~G~i-~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          119 TFIVDRKGII-RQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             EEEECTTSBE-EEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             EEEEcCCCCE-EEEEeCCCccchHHHHHHHHhhccc
Confidence            9888554454 3466774  5668888888877654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.98  E-value=1.5e-09  Score=86.69  Aligned_cols=86  Identities=15%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC------------------CC---------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS------------------AN---------------  293 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~------------------~~---------------  293 (360)
                      ..++++|.||++||++|..+.+.+.++.+.+.   ++.++.++++                  .+               
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPS  112 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999987   6899999887                  22               


Q ss_pred             --------CC-CCCCCCCCcEEEEEeCCCccCceEecCCC-CHHHHHHHHHHhcC
Q 018164          294 --------EH-PKLQVEEYPTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQLK  338 (360)
Q Consensus       294 --------~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~-~~~~l~~~i~~~~~  338 (360)
                              .+ ..+++.++|+++++..+.++   .+.|.. +.+.|.++|++.++
T Consensus       113 ~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i---~~~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          113 WIMVMDDGSLVEKFNVRSIDYIVIMDKSSNV---LYAGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             SEEEECCSHHHHHTTCCSSSEEEEEETTCCE---EEEEESCCHHHHHHHHHHC--
T ss_pred             eeEEeChHHHHHHhCCCCceEEEEEcCCCcE---EEeCCCCCHHHHHHHHHHHhc
Confidence                    11 24688999999999655443   337888 99999999988654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.97  E-value=9.3e-10  Score=86.96  Aligned_cols=86  Identities=19%  Similarity=0.358  Sum_probs=66.8

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------------CC-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~-~~~~i~  301 (360)
                      .+++++|.||++||++|..+.+.+.++++.  +  ++.++.++++.+                        .+ ..+++.
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  116 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--K--RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  116 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T--TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C--CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC
Confidence            378999999999999999999999988765  2  678888876432                        11 246899


Q ss_pred             CCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          302 EYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       302 ~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+++++ ++|..  ..++.|..+.+.|.++|.+.+.
T Consensus       117 ~~P~~~~id~~G~i--~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          117 GVPETFVVGREGTI--VYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             SSCEEEEECTTSBE--EEEEESCCCHHHHHHTHHHHHH
T ss_pred             ccCeEEEEcCCCCE--EEEEeCCCCHHHHHHHHHHHHH
Confidence            99988777 45544  3467899999999999988764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.96  E-value=1.7e-09  Score=82.12  Aligned_cols=101  Identities=12%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             ceeec-Cccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          103 LVTKL-TDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       103 ~v~~l-~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      .|..+ +.+++...+.    .+.++++.||++| +.|+.+.+.|.++++++. .+.|+.+|++...   .+++.|||.+.
T Consensus        17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~v~~~   92 (124)
T 1xfl_A           17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK---SVASDWAIQAM   92 (124)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSH---HHHHHTTCCSS
T ss_pred             cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCH---HHHHHcCCCcc
Confidence            34455 5566766554    3678889999999 999999999999999997 5999999999775   89999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                       |+++++ ..+. ....+.| .+.+.|.+++++++
T Consensus        93 -Pt~~~~-~~G~-~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           93 -PTFMFL-KEGK-ILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             -SEEEEE-ETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             -CEEEEE-ECCE-EEEEEeC-CCHHHHHHHHHHhc
Confidence             998544 3332 2233456 58999999998875

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.93  E-value=1e-09  Score=82.04  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             eeecCc-ccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTD-INSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~-~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +..++. +++......+.+.++.||++| +.|+.+.+.|.++++++.+ +.|+.+|++...   .+++.+|+.+. |+++
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~---~l~~~~~v~~~-Pt~~   88 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESP---DIAKECEVTAM-PTFV   88 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTTCCSB-SEEE
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCH---HHHHHCCCCcc-cEEE
Confidence            344443 445566667778899999999 9999999999999999988 999999999775   89999999999 9985


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      ++ ..+. ....+.|.. .+.|.+|+++
T Consensus        89 ~~-~~G~-~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LG-KDGQ-LIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EE-ETTE-EEEEEESSC-HHHHHHHHHT
T ss_pred             EE-eCCe-EEEEEeCCC-HHHHHHHHHh
Confidence            44 4332 222346766 8899988864

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.92  E-value=2e-09  Score=80.01  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=77.4

Q ss_pred             Cccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          108 TDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       108 ~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      +.+++...+.    .+.+.+++|+++| +.|+.+.+.|.++++++. .+.|+.+|++...   .+++.||+.+. |++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~---~~~~~~~v~~~-Pt~~~   85 (113)
T 1ti3_A           11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELK---AVAEEWNVEAM-PTFIF   85 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCH---HHHHHHHCSST-TEEEE
T ss_pred             cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccH---HHHHhCCCCcc-cEEEE
Confidence            5567766554    3678889999999 999999999999999997 5999999999775   89999999998 99854


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      + ..+. ....+.| .+.+.|.++++++++
T Consensus        86 ~-~~G~-~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           86 L-KDGK-LVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             E-ETTE-EEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             E-eCCE-EEEEEec-CCHHHHHHHHHHhhc
Confidence            4 4332 2223356 688999999998864

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.91  E-value=1.2e-09  Score=84.28  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeC---------CCcccchhHHhhcC
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI---------ADEDLAKPFLTLFG  172 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~---------~~~~~~~~l~~~~g  172 (360)
                      .+..++.++|...+..  +++|.||++| ++|+.+.+.|.+++++++  +.|+.+|+         +..   ..+++.||
T Consensus        17 ~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~---~~l~~~~~   89 (135)
T 3emx_A           17 RLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAA---RLEMNKAG   89 (135)
T ss_dssp             EEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHH---HHHHHHHT
T ss_pred             ceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhh---HHHHHHcC
Confidence            4667788888877665  8899999999 999999999999999997  89999999         544   38899999


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      |.+. |+++ ++..+ .....+.|..+.+.+..+++..+++
T Consensus        90 v~~~-Pt~~-~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           90 VEGT-PTLV-FYKEG-RIVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             CCSS-SEEE-EEETT-EEEEEEESCCCHHHHHHHHHHHC--
T ss_pred             Ccee-CeEE-EEcCC-EEEEEEeCCCCHHHHHHHHHHHhCC
Confidence            9999 9885 44433 2333457889999999999998864

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=2.1e-10  Score=88.83  Aligned_cols=101  Identities=12%  Similarity=0.088  Sum_probs=76.2

Q ss_pred             CCceeecCcccccccccCCC--ceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCC--
Q 018164          101 FPLVTKLTDINSASVHSSPI--KLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLE--  174 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~--~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~--  174 (360)
                      ...+..++.++|...+..+.  ++++.||++| ++|+.+.+.|.++++++.+ ++.|+.+|++...   .+++.|+|.  
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~   82 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT---DVSTRYKVSTS   82 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH---HHHHHTTCCCC
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH---HHHHHccCccc
Confidence            34578899999988665443  7899999999 9999999999999999986 7999999999875   899999998  


Q ss_pred             ----CCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          175 ----ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       175 ----~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                          .. |+++++ ..+. ....+.|..+.+.|.+|+
T Consensus        83 ~~~~~~-Pt~~~~-~~G~-~~~~~~G~~~~~~l~~~l  116 (137)
T 2dj0_A           83 PLTKQL-PTLILF-QGGK-EAMRRPQIDKKGRAVSWT  116 (137)
T ss_dssp             SSSSCS-SEEEEE-SSSS-EEEEESCBCSSSCBCCCC
T ss_pred             CCcCCC-CEEEEE-ECCE-EEEEecCcCchHHHHHHH
Confidence                77 998655 3322 222234554444444433

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.41  E-value=1.7e-10  Score=84.70  Aligned_cols=101  Identities=17%  Similarity=0.199  Sum_probs=81.6

Q ss_pred             eeecCccccccc-ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASV-HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~-~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +..++.+++... ...+.+++++|+++| +.|+.+.+.+.++++++.+++.|+.+|++...   .+++.+|+.+. |+++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~-Pt~~   78 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP---NTAAQYGIRSI-PTLL   78 (106)
Confidence            456788888754 456678889999999 99999999999999999988999999999775   89999999998 9986


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      ++ ..+ .....+.|..+.+.+.+|+++.
T Consensus        79 ~~-~~g-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           79 LF-KNG-QVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            55 332 2333457888888999888764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.88  E-value=4.1e-09  Score=79.00  Aligned_cols=103  Identities=12%  Similarity=0.082  Sum_probs=80.7

Q ss_pred             ceeec-CcccccccccC----CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          103 LVTKL-TDINSASVHSS----PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       103 ~v~~l-~~~~~~~~~~~----~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      .+..+ +.+++...+..    +.+.++.||++| +.|+.+.+.|.+++++++ .+.|+.+|++...   .+++.||+.+.
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~v~~~   82 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELK---DVAEAYNVEAM   82 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTTCCSB
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCH---HHHHHcCCCcC
Confidence            34555 56777776644    678899999999 999999999999999998 5999999999775   89999999998


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       |+++++ .++. ....+.| .+.+.|.+++.++++.
T Consensus        83 -Pt~~~~-~~g~-~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           83 -PTFLFI-KDGE-KVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             -SEEEEE-ETTE-EEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             -cEEEEE-eCCe-EEEEecC-CCHHHHHHHHHHHhcc
Confidence             998544 4332 2223456 5899999999998753

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.88  E-value=4.8e-09  Score=81.61  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=79.2

Q ss_pred             Ccccccccc-c-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          108 TDINSASVH-S-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       108 ~~~~~~~~~-~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      +.++|+..+ . .+.+++|.||++| ++|+.+.+.|.++++++.+++.|+.||++...   .+++.|||.+. |+++++ 
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~i~~~-Pt~~~~-   84 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP---DFNKMYELYDP-CTVMFF-   84 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTSSCSCSS-CEEEEE-
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCH---HHHHHcCCCCC-CEEEEE-
Confidence            455666433 3 4678899999999 99999999999999999888999999999876   89999999998 998654 


Q ss_pred             eCCCccc--------ccCCCCCC-HHHHHHHHHHHhcCc
Q 018164          185 DNKAISK--------FLLESDLT-PSNIEEFCSRLLHGT  214 (360)
Q Consensus       185 ~~~~~~~--------y~~~~~~~-~~~i~~fi~~~~~g~  214 (360)
                      ..+....        ..+.|..+ .+.+.++++..+.|.
T Consensus        85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~  123 (142)
T 1qgv_A           85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA  123 (142)
T ss_dssp             ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred             ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence            4432211        12345554 899999999988753

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.87  E-value=1.1e-09  Score=82.33  Aligned_cols=106  Identities=11%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             cCCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc-ccchhHHhhcCCCCCC
Q 018164          100 KFPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESK  177 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~gi~~~~  177 (360)
                      ....+..++.+++......+.++++.||++| ++|+.+.+.|.++++++..++.++-++.... .....+++.+||.+. 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~-   88 (118)
T 1zma_A           10 NIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV-   88 (118)
T ss_dssp             HTTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS-
T ss_pred             HHhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCC-
Confidence            3455677888888887777788999999999 9999999999999999986666654433211 111367899999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHH
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCS  208 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~  208 (360)
                      |+++++ ..+. ....+.|..+.+.|.+|++
T Consensus        89 Pt~~~~-~~G~-~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           89 PGFVHI-TDGQ-INVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CEEEEE-ETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             CeEEEE-ECCE-EEEEecCCCCHHHHHHHhh
Confidence            998644 4332 2334578899999999874

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.87  E-value=2.1e-09  Score=92.94  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=56.1

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------C-CC-CCCCCCCCcEEEEEeCCCccCceEe
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA------N-EH-PKLQVEEYPTLLFYPAGDKANPIKV  320 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~  320 (360)
                      +..+|+||||||++|+.+.|.|+++|+.+.        .+|++.      + ++ .+++|+++||+++  +|+     +|
T Consensus       198 ~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~--------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~-----~~  262 (291)
T 3kp9_A          198 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR-----TY  262 (291)
T ss_dssp             HTTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE-----EE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHcC--------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE-----Ee
Confidence            344799999999999999999999986552        355552      2 22 2679999999654  552     48


Q ss_pred             cCCCCHHHHHHHHHHh
Q 018164          321 SARSSSKNIAAFIKEQ  336 (360)
Q Consensus       321 ~g~~~~~~l~~~i~~~  336 (360)
                      .|.++.++|.+|+.-.
T Consensus       263 ~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          263 TGVRSLEALAVASGYP  278 (291)
T ss_dssp             ESCCCHHHHHHHTCCC
T ss_pred             cCCCCHHHHHHHHCCC
Confidence            9999999999998633

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.87  E-value=3.2e-09  Score=87.42  Aligned_cols=91  Identities=11%  Similarity=0.199  Sum_probs=70.5

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------C-CC-CC
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------------N-EH-PK  297 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------~-~~-~~  297 (360)
                      .+++|.||++||++|....+.+.++.+.+.+. ++.++.++++.                             + .+ ..
T Consensus        47 ~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (196)
T 2ywi_A           47 AATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKA  125 (196)
T ss_dssp             SEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHH
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHH
Confidence            35999999999999999999999999999753 58888888742                             1 11 24


Q ss_pred             CCCCCCcEEEEEeCCCccCceE---------ecCCCCHHHHHHHHHHhcCCCC
Q 018164          298 LQVEEYPTLLFYPAGDKANPIK---------VSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~---------~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +++.++|+++++..+.++ ..+         +.|..+.+.|.+.|++.+....
T Consensus       126 ~~v~~~P~~~lid~~G~i-~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          126 YDAACTPDFYIFDRDLKC-VYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             HTCCEESEEEEEETTCBE-EEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             hCCCCCCeEEEEcCCCeE-EEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            588899999999654443 123         3477789999999999886543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.87  E-value=7.3e-09  Score=81.58  Aligned_cols=86  Identities=10%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC------------------------C-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------------------------H-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------------~-~~~~i~  301 (360)
                      .+++++|.||++||++|....|.+.++++.+++. ++.++.++++...                        + ..+++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            3679999999999999999999999999999763 5899999887652                        2 134788


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      ++|+++++..++++ ..++.|..+.++...-+.
T Consensus       113 ~~P~~~lid~~G~i-~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          113 NLPSVFLVNRNNEL-SARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             SCSEEEEEETTTEE-EEETTTCSCHHHHHHHHH
T ss_pred             cCceEEEECCCCeE-EEecCCHHHHHHHHHHHH
Confidence            99999999655454 346778877776655443

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.87  E-value=3.9e-09  Score=81.74  Aligned_cols=103  Identities=11%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             ceeecCccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          103 LVTKLTDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      .+...+.++|...+.    .+.++++.||++| ++|+.+.+.|.++++++. .+.|+.+|++...   .+++.|||.+. 
T Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~---~~~~~~~v~~~-  100 (139)
T 3d22_A           26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELS---DFSASWEIKAT-  100 (139)
T ss_dssp             CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSH---HHHHHTTCCEE-
T ss_pred             EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccH---HHHHHcCCCcc-
Confidence            344445677776552    4678899999999 999999999999999996 5999999999875   89999999998 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      |+++++ ..+ .....+.|. +.+.|.+++..++.+
T Consensus       101 Pt~~~~-~~G-~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          101 PTFFFL-RDG-QQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             SEEEEE-ETT-EEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             cEEEEE-cCC-eEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            998554 433 223334566 899999999998865

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.86  E-value=6.2e-09  Score=81.09  Aligned_cols=78  Identities=17%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------  293 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------  293 (360)
                      +..++++.+.--- -.+++++|.||++||++|+.+.|.+.++++.+++..++.++.++++..                  
T Consensus        13 l~~~~g~~~~l~~-~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIALPS-LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGG-GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecHHH-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            4444454443221 246899999999999999999999999999998433788998988753                  


Q ss_pred             -------CC-CCCCCCCCcEEEEEe
Q 018164          294 -------EH-PKLQVEEYPTLLFYP  310 (360)
Q Consensus       294 -------~~-~~~~i~~~Pti~~~~  310 (360)
                             .+ ..+++.++|+++++.
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid  116 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVE  116 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEE
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEE
Confidence                   11 246899999999997

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.86  E-value=1.9e-09  Score=99.24  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             CceeecCcccccccccCC--CceEEEEEEec-cchHHHHHHHHHHHHhhc---C-----ceEEEEEeCCCcccchhHHhh
Q 018164          102 PLVTKLTDINSASVHSSP--IKLQVYVFAKA-DDLKSLLEPLEDIARNFK---G-----KIMFTAVDIADEDLAKPFLTL  170 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~--~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~-----~i~f~~vd~~~~~~~~~l~~~  170 (360)
                      ..|..++.++|+..+..+  .+++|.||++| ++|+.+.+.|.++++++.   +     ++.|+.||++...   .+++.
T Consensus        23 ~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~---~la~~   99 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV---DLCRK   99 (470)
T ss_dssp             TTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH---HHHHH
T ss_pred             CCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH---HHHHH
Confidence            458889999999877643  67899999999 999999999999999997   3     5999999999875   89999


Q ss_pred             cCCCCCCCceEEEEeCCCcccccCCCC------------CCHHHHHHHHHHHhcCc
Q 018164          171 FGLEESKNTVVTAFDNKAISKFLLESD------------LTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       171 ~gi~~~~p~~~~~~~~~~~~~y~~~~~------------~~~~~i~~fi~~~~~g~  214 (360)
                      |+|.++ |+++++.+++......|.|.            ++.+.+...++..++..
T Consensus       100 y~V~~~-PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~  154 (470)
T 3qcp_A          100 YDINFV-PRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH  154 (470)
T ss_dssp             TTCCSS-CEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCcc-CeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence            999999 99976655544334444554            44555666665554433

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.86  E-value=5.3e-09  Score=93.63  Aligned_cols=90  Identities=11%  Similarity=0.229  Sum_probs=72.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------------------CC-CC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------------------EH-PK  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------------~~-~~  297 (360)
                      ..++++|.||++||++|+.+.|.+.++++.+++. ++.++.|+++..                            .+ ..
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~-~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS-GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC-CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            3689999999999999999999999999999753 689999987531                            11 24


Q ss_pred             CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +++.++|+++++..+.++ ..++.|..+.+.|.++|++.+.
T Consensus       160 ygV~~~Pt~~lID~~G~I-v~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTV-RHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TTCCEESEEEEECTTSBE-EEEEESBCCHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeE-EEEEcCCCCHHHHHHHHHHHHh
Confidence            688999999999544443 3467899999999999998874

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.85  E-value=3.1e-09  Score=81.75  Aligned_cols=103  Identities=13%  Similarity=0.108  Sum_probs=79.5

Q ss_pred             ceeecCc-ccccccccC--CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          103 LVTKLTD-INSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       103 ~v~~l~~-~~~~~~~~~--~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .+..++. +++...+..  +.+++|.||++| +.|+.+.+.|.++++++  .+.|+.+|++...   .+++.|||.+. |
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~---~l~~~~~v~~~-P   94 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHP---KLNDQHNIKAL-P   94 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCH---HHHHHTTCCSS-S
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchH---HHHHhcCCCCC-C
Confidence            4556654 667666654  357889999999 99999999999999888  5999999999775   89999999999 9


Q ss_pred             ceEEEEe-CCCc-ccccCCCCCCHHHHHHHHHHHhc
Q 018164          179 TVVTAFD-NKAI-SKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       179 ~~~~~~~-~~~~-~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++++.+ .+.+ ....+.|. +.+.|.++++.++.
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9965532 2221 23334565 89999999999875

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.84  E-value=1.1e-08  Score=71.68  Aligned_cols=82  Identities=11%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      .+.+++|+++| ++|+++.+.++++++++.+++.|+.+|++...   .+++.+|+.+. |+++ +  ++  .. .+.|..
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~-~--~G--~~-~~~G~~   72 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYGIMAV-PTIV-I--NG--DV-EFIGAP   72 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTTTCCS-SEEE-E--TT--EE-ECCSSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHCCCccc-CEEE-E--CC--EE-eeecCC
Confidence            35678999999 99999999999999999988999999999775   88999999998 9984 3  22  22 457888


Q ss_pred             CHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLL  211 (360)
Q Consensus       199 ~~~~i~~fi~~~~  211 (360)
                      +.+.|.+++++.+
T Consensus        73 ~~~~l~~~l~~~l   85 (85)
T 1fo5_A           73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.84  E-value=8.7e-09  Score=82.37  Aligned_cols=66  Identities=24%  Similarity=0.368  Sum_probs=55.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C------------------------C-CCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E------------------------H-PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~------------------------~-~~~~i  300 (360)
                      .+++++|.||++||++|+.+.|.+.++++.+++..++.++.|+++.. .                        + ..+++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            46899999999999999999999999999998644788888887765 1                        1 24589


Q ss_pred             CCCcEEEEEeCC
Q 018164          301 EEYPTLLFYPAG  312 (360)
Q Consensus       301 ~~~Pti~~~~~g  312 (360)
                      .++|+++++..+
T Consensus       127 ~~~Pt~~lid~~  138 (165)
T 3s9f_A          127 ESIPTLIGLNAD  138 (165)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            999999999853

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.83  E-value=7.8e-09  Score=80.74  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------------CC-CCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------------EH-PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------------~~-~~~~i  300 (360)
                      .+++++|+||++||++|+.+.|.+.++++.+++..++.++.++++..                         .+ ..+++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            46799999999999999999999999999998433788888888763                         11 24689


Q ss_pred             CCCcEEEEEe
Q 018164          301 EEYPTLLFYP  310 (360)
Q Consensus       301 ~~~Pti~~~~  310 (360)
                      .++|+++++.
T Consensus       107 ~~~Pt~~lid  116 (146)
T 1o8x_A          107 ESIPTLIGVD  116 (146)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999997

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.83  E-value=1e-08  Score=76.96  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=78.4

Q ss_pred             Cceeec--Ccccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKL--TDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l--~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      +.+..+  +..++.. +...+.++++.||++| +.|+.+.+.|.++++++ +.+.|+.+|++...   .+++.|+|.+. 
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~---~~~~~~~i~~~-   77 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG---NAADAYGVSSI-   77 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCH---HHHHHTTCCSS-
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCH---HHHHhcCCCCC-
Confidence            345555  5666763 4456778899999999 99999999999999999 67999999999875   89999999998 


Q ss_pred             CceEEEEeCC--CcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNK--AISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~--~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++.+.+  +.....+.|. ..+.|.+.+..+..
T Consensus        78 Pt~~~~~~~~~~G~~~~~~~G~-~~~~l~~~~~~~~~  113 (118)
T 2f51_A           78 PALFFVKKEGNEIKTLDQFVGA-DVSRIKADIEKFKH  113 (118)
T ss_dssp             SEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHC-
T ss_pred             CEEEEEeCCCCcceEEEeecCC-CHHHHHHHHHHhhh
Confidence            9986554311  1122233454 45669999988753

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.80  E-value=3.3e-08  Score=76.13  Aligned_cols=100  Identities=12%  Similarity=0.080  Sum_probs=76.3

Q ss_pred             CCceeecCcccccccccC---CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          101 FPLVTKLTDINSASVHSS---PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~---~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ...+.+++.++|...+..   +.+++|.||++| ++|+.+.+.|.+++.++. .+.|+.||++...      +.|+|...
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~------~~~~i~~~   81 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI------EHYHDNCL   81 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC------SSCCSSCC
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc------ccCCCCCC
Confidence            455777788888875543   257889999999 999999999999999996 4999999998652      67999998


Q ss_pred             CCceEEEEeCCCcccccCCCC-------CCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESD-------LTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~-------~~~~~i~~fi~~~  210 (360)
                       |+++++.++....++  .|.       ++.+.|.+++..+
T Consensus        82 -Pt~~~~~~G~~v~~~--~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           82 -PTIFVYKNGQIEGKF--IGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             -SEEEEESSSSCSEEE--ESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             -CEEEEEECCEEEEEE--EeEEeeCCCcCCHHHHHHHHHHc
Confidence             998655433222222  232       4889999999986

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.80  E-value=9.8e-09  Score=82.99  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=65.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------------CC-CCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVE  301 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~-~~~~i~  301 (360)
                      .+++++|.||++||++|....|.+.++++.     ++.++.|+++..                        .+ ..+++.
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  131 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY  131 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC
Confidence            368999999999999999999999999876     366666664221                        11 135888


Q ss_pred             CCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       302 ~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+++++..++++ ..++.|..+.+.+.++|.+.+.
T Consensus       132 ~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          132 GAPETYLIDKQGII-RHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             SSCEEEEECTTCBE-EEEEESCCCHHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCeE-EEEEcCCCCHHHHHHHHHHHHH
Confidence            99999888554454 3577899999999999988765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.80  E-value=9.1e-09  Score=80.06  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=53.6

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-------------------------C-CCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-------------------------H-PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------------------------~-~~~~i  300 (360)
                      .+++++|.||++||++|+.+.|.+.++++.+++..++.++.++++.+.                         + ..+++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            467999999999999999999999999999984347888888887631                         1 13488


Q ss_pred             CCCcEEEEEe
Q 018164          301 EEYPTLLFYP  310 (360)
Q Consensus       301 ~~~Pti~~~~  310 (360)
                      .++|+++++.
T Consensus       107 ~~~Pt~~lid  116 (144)
T 1o73_A          107 ESIPTLITIN  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999998

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=2.8e-08  Score=77.87  Aligned_cols=87  Identities=10%  Similarity=0.290  Sum_probs=67.7

Q ss_pred             cCccEEEEEeCCCChh--hHHHHHHHHHHHHHh-cCCCCEEEEEEeCCCCC--------------------------C-C
Q 018164          247 SHKDVLLEVYTPWCVT--CETTSKQIEKLAKHF-KGLDNLVIAKIDASANE--------------------------H-P  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~--c~~~~~~~~~la~~~-~~~~~~~~~~id~~~~~--------------------------~-~  296 (360)
                      .+++++|.||++||++  |....|.+.++.+.+ ++ .++.++.|+++...                          + .
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN-KYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC-SSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            4689999999999999  999999999999999 54 36899988877542                          1 2


Q ss_pred             CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          297 KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       297 ~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      .+++.++|+++++..++++   .+.. .+.+.+.+.|++.+.
T Consensus       111 ~~~v~~~P~~~lid~~G~i---~~~~-~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGKI---LAKN-LRGEELKKKIENIVE  148 (150)
T ss_dssp             HTTCCSSSEEEEECTTSBE---EEES-CCHHHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCEE---EEcc-CCHHHHHHHHHHHHh
Confidence            4689999999999544443   2222 388888888887654

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.78  E-value=1.9e-08  Score=82.22  Aligned_cols=90  Identities=13%  Similarity=0.274  Sum_probs=70.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------C-CC-
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------------N-EH-  295 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------~-~~-  295 (360)
                      ..++++|.||++||++|....+.+.++++.+.+  ++.++.++++.                             + .+ 
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~--~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc--CeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            368999999999999999999999999999986  38999998742                             1 12 


Q ss_pred             CCCCCCCCcEEEEEeCCCccCceEecC----------CCCHHHHHHHHHHhcCCCC
Q 018164          296 PKLQVEEYPTLLFYPAGDKANPIKVSA----------RSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       296 ~~~~i~~~Pti~~~~~g~~~~~~~~~g----------~~~~~~l~~~i~~~~~~~~  341 (360)
                      ..+++.++|+++++..+.++   .+.|          ..+.+.|.+.|++.+....
T Consensus       110 ~~~~v~~~P~~~lid~~G~i---~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLL---RYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBE---EEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             HHcCCCCCCeEEEECCCCcE---EEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            24688999999999554443   2333          3478999999999887543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.77  E-value=1.4e-08  Score=71.13  Aligned_cols=81  Identities=11%  Similarity=0.080  Sum_probs=68.5

Q ss_pred             ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCC
Q 018164          121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLT  199 (360)
Q Consensus       121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~  199 (360)
                      ..++.|+++| +.|+++.+.+.++++++.+++.|+.+|++...   .+++.+|+.+. |+++ + + +.  . .+.|..+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~-Pt~~-~-~-G~--~-~~~G~~~   72 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR---EKAIEYGLMAV-PAIA-I-N-GV--V-RFVGAPS   72 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG---GGGGGTCSSCS-SEEE-E-T-TT--E-EEECSSC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCH---HHHHhCCceee-CEEE-E-C-CE--E-EEccCCC
Confidence            3578899999 99999999999999999988999999999775   89999999998 9985 3 2 22  2 3467789


Q ss_pred             HHHHHHHHHHHh
Q 018164          200 PSNIEEFCSRLL  211 (360)
Q Consensus       200 ~~~i~~fi~~~~  211 (360)
                      .+.|.+++++.+
T Consensus        73 ~~~l~~~l~~~l   84 (85)
T 1nho_A           73 REELFEAINDEM   84 (85)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.76  E-value=1.4e-08  Score=79.45  Aligned_cols=97  Identities=10%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             ccccccc---cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEE
Q 018164          238 KTFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLL  307 (360)
Q Consensus       238 ~~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~  307 (360)
                      .+|++.+   ...++++||.||++||..|+.|....   .++++.++.  ++.+..+|.+..+-    ..+++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            3555554   34488999999999999999997655   567777765  79999999865322    256899999999


Q ss_pred             EEeC--CCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          308 FYPA--GDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       308 ~~~~--g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      ++..  |+...  .+.| .+.+.+.++|.+.+..
T Consensus       107 fld~~~G~~l~--~~~g-~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          107 ILDPRTGQKLV--EWHQ-LDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             EECTTTCCCCE--EESS-CCHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcEee--ecCC-CCHHHHHHHHHHHHHh
Confidence            9955  44432  3455 8999999999887653

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.75  E-value=2e-08  Score=75.17  Aligned_cols=101  Identities=11%  Similarity=0.106  Sum_probs=77.1

Q ss_pred             CCceeecCccccccccc-CCC--ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          101 FPLVTKLTDINSASVHS-SPI--KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~-~~~--~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ...+.+++.++|...+. .+.  +.++.||++| ++|+.+.+.|.++|++|.+ +.|+.||++..      ...|+|...
T Consensus         2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~-v~f~kvd~d~~------~~~~~v~~~   74 (118)
T 3evi_A            2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVNSC------IQHYHDNCL   74 (118)
T ss_dssp             CCSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT-SEEEEEEGGGT------STTCCGGGC
T ss_pred             CcceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-CEEEEEEhHHh------HHHCCCCCC
Confidence            34577889999987543 333  7889999999 9999999999999999975 99999998853      478999988


Q ss_pred             CCceEEEEeCCCccccc-C---CC-CCCHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFL-L---ES-DLTPSNIEEFCSR  209 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~-~---~~-~~~~~~i~~fi~~  209 (360)
                       |+++++.++....++. +   .| .++.+.|..++..
T Consensus        75 -PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           75 -PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             -SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             -CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence             9997665543322221 1   12 4789999999876

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=1.7e-08  Score=77.08  Aligned_cols=106  Identities=10%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             eecCcccccccc----cCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          105 TKLTDINSASVH----SSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       105 ~~l~~~~~~~~~----~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      ..++..++...+    ..+.+++|.||++| +.|+.+.+.+   ..+++.+...+.++.+|++... +..+++.||+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~   87 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-GVELRKKYGVHAY   87 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT-HHHHHHHTTCCSS
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc-hHHHHHHcCCCCC
Confidence            345667776655    25678899999999 9999999998   7788887778999999998421 2489999999998


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       |+++ +++.++...+.+.|..+.+.|.+|++..+.+
T Consensus        88 -Pt~~-~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           88 -PTLL-FINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             -CEEE-EECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             -CEEE-EECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence             9985 5543333344557888999999999998764

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.73  E-value=3.3e-08  Score=82.83  Aligned_cols=90  Identities=16%  Similarity=0.286  Sum_probs=69.9

Q ss_pred             Cc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------------C-CC-
Q 018164          248 HK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------------N-EH-  295 (360)
Q Consensus       248 ~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------------~-~~-  295 (360)
                      .+ .++|.||++||+.|....|.+.++++.+++. ++.++.|+++.                             + .+ 
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            45 5999999999999999999999999999763 59999998842                             1 22 


Q ss_pred             CCCCCCCCcEEEEEeCCCccCceEecC-----------CCCHHHHHHHHHHhcCCCC
Q 018164          296 PKLQVEEYPTLLFYPAGDKANPIKVSA-----------RSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       296 ~~~~i~~~Pti~~~~~g~~~~~~~~~g-----------~~~~~~l~~~i~~~~~~~~  341 (360)
                      ..+++..+|+++++..+.++   .|.|           ..+.+.|.+.|.+.+....
T Consensus       137 ~~~~v~~~P~~~liD~~G~i---~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRL---VYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBE---EEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             HHcCCCCCCeEEEECCCCcE---EEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            24588999999999554443   4543           3457899999999886544

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.72  E-value=1.8e-08  Score=76.30  Aligned_cols=101  Identities=10%  Similarity=0.059  Sum_probs=77.0

Q ss_pred             CceeecCcccccccccC--CCceEEEEEEe-------c-cchHHHHHHHHHHHHhhcCceEEEEEeC-------CCcccc
Q 018164          102 PLVTKLTDINSASVHSS--PIKLQVYVFAK-------A-DDLKSLLEPLEDIARNFKGKIMFTAVDI-------ADEDLA  164 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~--~~~~~v~f~~~-------~-~~~~~~~~~~~~la~~~~~~i~f~~vd~-------~~~~~~  164 (360)
                      +.+...+.++|...+..  +.+.++.|+++       | ++|..+.+.|.++++++.+++.|+.+|+       +...  
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~--   82 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNN--   82 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTC--
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhH--
Confidence            34556677778776654  67889999999       9 9999999999999999988899999999       5554  


Q ss_pred             hhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          165 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       165 ~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                       .+++.|+|.+. |+++ ++...  .+..-....+.+.|.+|+++
T Consensus        83 -~~~~~~~i~~~-Pt~~-~~~~~--~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           83 -DFRKNLKVTAV-PTLL-KYGTP--QKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             -HHHHHHCCCSS-SEEE-ETTSS--CEEEGGGGGCHHHHHHHHHC
T ss_pred             -HHHHHCCCCee-CEEE-EEcCC--ceEeccccCCHHHHHHHHhc
Confidence             88999999999 9985 44432  22211122577888888864

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.72  E-value=2.2e-08  Score=77.88  Aligned_cols=84  Identities=10%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC---------------------------C-CCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---------------------------H-PKL  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------------------~-~~~  298 (360)
                      .+++++|.||++||++|....|.+.++.+.+++. ++.+..|+++.+.                           + ..+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            4689999999999999999999999999999753 6888888877431                           0 135


Q ss_pred             CCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          299 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       299 ~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      ++.++|+.+++..++++   .+. ..+.+++.++|++
T Consensus       110 ~v~~~P~~~lid~~G~i---~~~-~~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVI---IAA-NVTPEKLTEILKA  142 (143)
T ss_dssp             TGGGCCCEEEECTTSBE---EEE-SCCHHHHHHHHTC
T ss_pred             CCCCCCcEEEECCCCEE---EEc-cCCHHHHHHHHHh
Confidence            78899999999755443   232 2456777777653

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.70  E-value=4e-09  Score=80.55  Aligned_cols=103  Identities=9%  Similarity=0.080  Sum_probs=79.4

Q ss_pred             ceeec-Cccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCC
Q 018164          103 LVTKL-TDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES  176 (360)
Q Consensus       103 ~v~~l-~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~  176 (360)
                      .+..+ +.+++...+.    .+.+.+++||.+| +.|+.+.+.|.+++++++ .+.|+.+|++...   .+++.||+...
T Consensus        15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~---~~~~~~~v~~~   90 (130)
T 1wmj_A           15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELK---EVAEKYNVEAM   90 (130)
T ss_dssp             SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSG---GGHHHHTCCSS
T ss_pred             ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchH---HHHHHcCCCcc
Confidence            34444 4466665543    3678889999999 999999999999999997 5999999999775   89999999999


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       |+++++ ..+ .....+.| .+.+.|.+|+.+++..
T Consensus        91 -Pt~~~~-~~g-~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           91 -PTFLFI-KDG-AEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             -CCCCBC-TTT-TCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             -ceEEEE-eCC-eEEEEEeC-CCHHHHHHHHHHHHhc
Confidence             998544 332 22233456 5888999999998864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=1.7e-09  Score=85.82  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=64.6

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHH-HHHHhcCCCCEEEEEEeCCCC-C-CCCCC------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEK-LAKHFKGLDNLVIAKIDASAN-E-HPKLQ------------------------  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~-la~~~~~~~~~~~~~id~~~~-~-~~~~~------------------------  299 (360)
                      .+++++|.||++||++|..+.|.+.+ +...+....++.++.++++.+ + +..+.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            46799999999999999999999998 888886223788888887765 2 32332                        


Q ss_pred             CCCCcEEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          300 VEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       300 i~~~Pti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +.++|+++++ ++|..+  .++.| .+.+++.++|++..+
T Consensus       112 ~~~~P~~~lid~~G~i~--~~~~g-~~~~~l~~~l~~l~~  148 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIV--KLTRL-YNEEEFASLVQQINE  148 (159)
Confidence            5679999999 555443  24455 456677777766544

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.68  E-value=6.2e-08  Score=74.26  Aligned_cols=90  Identities=11%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             cCCCceEEEEEEec-cchHHHHHHHH--HHHHhhcCceEEEEEeC---CCcccchhHHhhcCC---CCCCCceEEEEeCC
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLEPLE--DIARNFKGKIMFTAVDI---ADEDLAKPFLTLFGL---EESKNTVVTAFDNK  187 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~~~~--~la~~~~~~i~f~~vd~---~~~~~~~~l~~~~gi---~~~~p~~~~~~~~~  187 (360)
                      ..+++++|.|+++| ++|+.+.+.|.  +++..+.+++.++.||+   +..   ..+++.|||   .+. |+++ +++.+
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~---~~l~~~~~v~~~~~~-Pt~~-~~d~~  101 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRN---LELSQAYGDPIQDGI-PAVV-VVNSD  101 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSS---HHHHHHTTCGGGGCS-SEEE-EECTT
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccch---HHHHHHhCCccCCcc-ceEE-EECCC
Confidence            35678899999999 99999999999  99999987899999999   555   489999999   888 9985 55433


Q ss_pred             CcccccCCC-------CCCHHHHHHHHHHHh
Q 018164          188 AISKFLLES-------DLTPSNIEEFCSRLL  211 (360)
Q Consensus       188 ~~~~y~~~~-------~~~~~~i~~fi~~~~  211 (360)
                      +...+...|       ..+.+.+.+|++.+.
T Consensus       102 G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          102 GKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             SCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             CCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            333444445       478999999998753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.67  E-value=6.4e-08  Score=77.71  Aligned_cols=89  Identities=21%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------C-CC---C------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------N-EH---P------------------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--------~-~~---~------------------  296 (360)
                      ..++++|.||++||+.|. ..|.+.++.+++++. ++.+..++++.        . .+   .                  
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            468999999999999999 999999999999763 58888886530        0 00   0                  


Q ss_pred             -------------CCCCCCCc------EEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          297 -------------KLQVEEYP------TLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       297 -------------~~~i~~~P------ti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                                   .+++.++|      +++++ ++|..  ..++.|..+.+.|.+.|.+.+..
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKV--YERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCE--EEEECTTSCGGGGHHHHHHHHTC
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCE--EEEeCCCCCHHHHHHHHHHHHHh
Confidence                         24577889      77777 45544  34677889999999999988753

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.66  E-value=1e-07  Score=77.72  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC---------CCC----C-C---------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------NEH----P-K---------------  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------~~~----~-~---------------  297 (360)
                      ..++++|.||++||++|....|.+.++.+++++. ++.++.|.++.         ..+    . .               
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  123 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCC
Confidence            4689999999999999999999999999999764 57888887652         001    0 1               


Q ss_pred             -----------------CCCCCCc---EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          298 -----------------LQVEEYP---TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       298 -----------------~~i~~~P---ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                                       +++..+|   +++++..++++ ...+.|..+.+.|.+.|.+.+..
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i-~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          124 ENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVP-VERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             C-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCE-EEEECTTCCHHHHHHHHHHHC--
T ss_pred             cchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCE-EEEECCCCCHHHHHHHHHHHHhc
Confidence                             0233566   88888444443 34678999999999999998864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.66  E-value=5.3e-08  Score=74.83  Aligned_cols=108  Identities=7%  Similarity=0.018  Sum_probs=78.4

Q ss_pred             CCcee-ecCccccccccc--CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCc-ccchhHHhhcC
Q 018164          101 FPLVT-KLTDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADE-DLAKPFLTLFG  172 (360)
Q Consensus       101 ~p~v~-~l~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~g  172 (360)
                      .|.+. ..+.+++...+.  .+++++|.||++| +.|..+.+.+   .++++.+++ +.++.+|++.. +-...+++.||
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~   88 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN   88 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC
Confidence            34444 334444554443  2678899999999 9999999998   899999986 99999999532 11247899999


Q ss_pred             CCCCCCceEEEEeCCCccc--ccCCCCCCHHHHHHHHHHHh
Q 018164          173 LEESKNTVVTAFDNKAISK--FLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~--y~~~~~~~~~~i~~fi~~~~  211 (360)
                      |.+. |+++ +++.++...  +.+.|..+.+.|.++++...
T Consensus        89 v~~~-Pt~~-~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           89 VLGL-PTIL-FFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             CCSS-SEEE-EECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             CCCC-CEEE-EECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            9998 9985 553332222  56689999999999998753

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.66  E-value=2e-08  Score=72.90  Aligned_cols=78  Identities=12%  Similarity=0.267  Sum_probs=59.9

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC--CC-CC-CCCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS--AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      ..+++++|+++||++|+.+.+.+++++    .  .+.+..+|++  .+ ++ ..++ .++|++  +.+|+.   + ..|.
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~----~--~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~---~-~~~g   81 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK----D--RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQF---L-MMHR   81 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS----S--SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSE---E-EESS
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh----h--CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEE---E-EecC
Confidence            557899999999999999999888764    2  4889999998  44 33 3578 999986  456654   2 3456


Q ss_pred             CCHHHHHHHHHHhcC
Q 018164          324 SSSKNIAAFIKEQLK  338 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~  338 (360)
                      .+.+.|.++|.+.+.
T Consensus        82 ~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           82 VNTSKLEKQLRKLSG   96 (100)
T ss_dssp             CCHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            889999999987654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.66  E-value=1e-07  Score=76.22  Aligned_cols=89  Identities=13%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC----C-CC--------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH----P-KL--------------  298 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~----~-~~--------------  298 (360)
                      ..++++|.||++||++|....|.+.++++.+++. ++.++.|+++.       .  .+    . .+              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            4689999999999999999999999999999763 58999998752       0  00    0 10              


Q ss_pred             ---------------CC--CCCc---EEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          299 ---------------QV--EEYP---TLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       299 ---------------~i--~~~P---ti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                                     ++  .++|   +++++ ++|..  ..++.|..+.+.|.++|.+.+.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQV--VDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCE--EEEECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCE--EEeeCCCCCHHHHHHHHHHHhh
Confidence                           23  5678   77777 44544  3467898899999999998875

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.66  E-value=2.5e-08  Score=80.00  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcCC--CCEEEEEEeCCCC-CCC--------------------------
Q 018164          247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGL--DNLVIAKIDASAN-EHP--------------------------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~--~~~~~~~id~~~~-~~~--------------------------  296 (360)
                      ..++++|.||++||++ |....|.+.++.+.++..  .++.++.|+++.+ +.+                          
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4679999999999997 999999999999988742  2688999988743 110                          


Q ss_pred             ------------------CCCCCCCcEEEEEeCCCccCceEecCCC--CHHHHHHHHHHh
Q 018164          297 ------------------KLQVEEYPTLLFYPAGDKANPIKVSARS--SSKNIAAFIKEQ  336 (360)
Q Consensus       297 ------------------~~~i~~~Pti~~~~~g~~~~~~~~~g~~--~~~~l~~~i~~~  336 (360)
                                        .+++..+|+++++. +.++ ...+.|..  +.+.|.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i-~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRL-VLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEE-EEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEE-EEEECCCCCCCHHHHHHHHHHh
Confidence                              12356789999999 5554 34677777  899999999865

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.64  E-value=1.8e-07  Score=76.47  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC------------C---------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH------------P---------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~------------~---------  296 (360)
                      ..++++|.||++||+.|....|.+.++.+.+++. ++.++.|+++.       .  .+            +         
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            4689999999999999999999999999999763 58888887752       0  00            0         


Q ss_pred             -------------CCCCCCCc------EEEEE-eCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          297 -------------KLQVEEYP------TLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       297 -------------~~~i~~~P------ti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                                   .+++.++|      +++++ ++|..  ..++.|..+.+.|.+.|.+.+..
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVP--VERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCE--EEEECTTCCHHHHHHHHHHHHHC
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcE--EEEECCCCCHHHHHHHHHHHHhh
Confidence                         12566788      77777 45544  34678989999999999988754

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.08  E-value=3.3e-09  Score=82.40  Aligned_cols=67  Identities=13%  Similarity=0.263  Sum_probs=51.9

Q ss_pred             Cc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC--------------------------CC-CCC
Q 018164          248 HK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN--------------------------EH-PKL  298 (360)
Q Consensus       248 ~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~--------------------------~~-~~~  298 (360)
                      ++ +++|.||++||++|+.+.|.+.++++.++.. .++.++.++++.+                          .+ ..+
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            55 9999999999999999999999999998432 2577777766543                          12 246


Q ss_pred             CCCCCcEEEEEe-CCCc
Q 018164          299 QVEEYPTLLFYP-AGDK  314 (360)
Q Consensus       299 ~i~~~Pti~~~~-~g~~  314 (360)
                      ++.++|+++++. +|..
T Consensus       105 ~v~~~P~~~lid~~G~i  121 (143)
T 2lus_A          105 GITGIPALVIVKKDGTL  121 (143)
Confidence            889999999997 4543

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.62  E-value=1.2e-07  Score=75.42  Aligned_cols=91  Identities=12%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcCC---CCEEEEEEeCCCC-C---------------------------
Q 018164          247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGL---DNLVIAKIDASAN-E---------------------------  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~-~---------------------------  294 (360)
                      .+++++|.||++||++ |....+.+.++.+.++..   .++.+..+.++.. +                           
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3689999999999997 999999999999998641   3788888887652 1                           


Q ss_pred             -C-CCCCCCCCc---------------EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          295 -H-PKLQVEEYP---------------TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       295 -~-~~~~i~~~P---------------ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                       + ..+++...|               +++++..++++ ...+.|..+.+.|.+.|.+.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF-LDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCE-EEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeE-EEEeCCCCCHHHHHHHHHHHHH
Confidence             1 245777788               67777443343 3467888999999999998765

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.61  E-value=6.4e-08  Score=77.35  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----C----C-----C------------C---
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----E----H-----P------------K---  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----~----~-----~------------~---  297 (360)
                      .+++++|.||++||++|....|.+.++.+.+++. ++.++.|+++..     +    +     .            .   
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            4689999999999999999999999999999763 588888887520     0    0     0            0   


Q ss_pred             ------C--------C-----CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          298 ------L--------Q-----VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       298 ------~--------~-----i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                            +        +     +..+|+++++..++++ ..++.|..+.+.|.+.|.+.+.
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQP-VKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCE-EEEECTTSCGGGGHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCE-EEEcCCCCCHHHHHHHHHHHhc
Confidence                  0        2     3446888888544443 3467888899999999988764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.60  E-value=1.9e-07  Score=74.11  Aligned_cols=86  Identities=7%  Similarity=0.047  Sum_probs=62.2

Q ss_pred             Ccc-EEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC---------------------C-CC-CCCCCCC
Q 018164          248 HKD-VLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------------------N-EH-PKLQVEE  302 (360)
Q Consensus       248 ~~~-~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------------------~-~~-~~~~i~~  302 (360)
                      .+. ++|.|| ++||++|....|.+.++.+++++. ++.++.|+++.                     + .+ ..+++.+
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            455 999999 999999999999999999999763 58888888762                     1 22 2467888


Q ss_pred             ----CcEEEEEeCCCccCceEecCC----CCHHHHHHHHHH
Q 018164          303 ----YPTLLFYPAGDKANPIKVSAR----SSSKNIAAFIKE  335 (360)
Q Consensus       303 ----~Pti~~~~~g~~~~~~~~~g~----~~~~~l~~~i~~  335 (360)
                          +|+++++..++++ ...+.|.    ...+.+++.|++
T Consensus       107 ~~~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          107 FILPARITFVIDKKGII-RHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             SSSCCCEEEEECTTSBE-EEEEECSSCTTHHHHHHHHHHHH
T ss_pred             cCcccceEEEECCCCEE-EEEEecCCCCCcCHHHHHHHHHH
Confidence                9999999655454 2356663    233555555554

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.60  E-value=3.9e-09  Score=79.03  Aligned_cols=77  Identities=8%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------CCC-CCCCCCCcEEEEEeCCCccCceEec
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------EHP-KLQVEEYPTLLFYPAGDKANPIKVS  321 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~~~-~~~i~~~Pti~~~~~g~~~~~~~~~  321 (360)
                      +++++ ||++||++|+.+.+.+++++.      .+.++.+|.+.+      .+. .+++.++|++  |.+|..+  ..+.
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~------~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v--~~~~   88 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGA------SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQI--GGCD   88 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTC------CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE--ECHH
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCC------CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEE--CChH
Confidence            45555 999999999999999988842      345655555443      132 4699999999  4566543  2344


Q ss_pred             CCC---CHHHHHHHHHHh
Q 018164          322 ARS---SSKNIAAFIKEQ  336 (360)
Q Consensus       322 g~~---~~~~l~~~i~~~  336 (360)
                      |..   +.+.|.++|++.
T Consensus        89 ~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           89 TVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHhCChHHHHHHHc
Confidence            443   666788888764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.60  E-value=2.6e-07  Score=73.98  Aligned_cols=92  Identities=10%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcC---CCCEEEEEEeCCCC-C---------------------------
Q 018164          247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKG---LDNLVIAKIDASAN-E---------------------------  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~---~~~~~~~~id~~~~-~---------------------------  294 (360)
                      ..++++|.||++||++ |....|.+.++.+.++.   ..++.++.|.++.. +                           
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3679999999999998 99999999999999952   13788888887642 1                           


Q ss_pred             -C-CCCCCCCCc---------------EEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          295 -H-PKLQVEEYP---------------TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       295 -~-~~~~i~~~P---------------ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                       + ..+++...|               +++++..+.++ ...+.|..+.+.|.+.|++.+..
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i-~~~~~g~~~~~~l~~~l~~ll~~  165 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLF-TDYYGRSRSAEQISDSVRRHMAA  165 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCE-EEEEESSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeE-EEEECCCCCHHHHHHHHHHHHHH
Confidence             1 135666667               77777443343 34678999999999999987753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.58  E-value=2.2e-08  Score=83.62  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=78.1

Q ss_pred             CCceeec-CcccccccccCC---CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          101 FPLVTKL-TDINSASVHSSP---IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l-~~~~~~~~~~~~---~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ...|.++ +.++|...+...   .+++|.||++| ++|+.+.+.|.++|.+|. .+.|+.||++ .+   .++..|+|..
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~---~l~~~~~i~~  172 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NT---GAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HH---TCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cH---HHHHHCCCCC
Confidence            3457777 888888766432   67889999999 999999999999999996 5999999998 43   7889999999


Q ss_pred             CCCceEEEEeCCCcccccCCC-------CCCHHHHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKFLLES-------DLTPSNIEEFCSRL  210 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~-------~~~~~~i~~fi~~~  210 (360)
                      . |+++++.++.....+  .|       .++.+.|..|+..+
T Consensus       173 ~-PTl~~~~~G~~v~~~--~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          173 L-PTLLVYKGGELISNF--ISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C-SEEEEEETTEEEEEE--TTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C-CEEEEEECCEEEEEE--eCCcccCcccCCHHHHHHHHHHc
Confidence            9 998655432222222  33       24568999999874

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.56  E-value=2.6e-07  Score=75.01  Aligned_cols=88  Identities=10%  Similarity=0.050  Sum_probs=64.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------------------C-C
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------------------------------N-E  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------------------~-~  294 (360)
                      ..++++|.||++||+.|....|.+.++.+.+++. ++.++.|+++.                               + .
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC-CeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            4689999999999999999999999999999763 58888887652                               0 0


Q ss_pred             CCC--C----------C-----CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          295 HPK--L----------Q-----VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       295 ~~~--~----------~-----i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      ...  +          +     +...|+++++..+.++ ..++.|..+.+.|.++|++.
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV-VKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCE-EEEECTTSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCE-EEEeCCCCCHHHHHHHHHHh
Confidence            000  1          1     3345999988544443 34678888888888877654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.55  E-value=3.6e-07  Score=75.75  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=38.8

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..++++|.||++||+.|....|.+.++.+++++. ++.+..|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECC
Confidence            4679999999999999999999999999999763 5888888875

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.51  E-value=1.3e-08  Score=70.64  Aligned_cols=59  Identities=19%  Similarity=0.312  Sum_probs=41.9

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-CC-CC-CCCCCCCCcEEEEEeCCC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~-~~-~~~~i~~~Pti~~~~~g~  313 (360)
                      .+++|+++||++|+.+.+.++++++.+..  .+.+..+|.+ .+ ++ ..+++.++|++++  +|+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKY--TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTE--EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCC--eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            36789999999999999999988765532  3555555443 12 22 3569999999987  554

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.51  E-value=2.5e-07  Score=74.96  Aligned_cols=88  Identities=11%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C--CC------------C---------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH------------P---------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~--~~------------~---------  296 (360)
                      ..++++|.||++||+.|....|.+.++++++++. ++.++.|+++.       .  .+            +         
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            4679999999999999999999999999999763 58888888753       0  00            0         


Q ss_pred             -------CCCCCCCc-------EEEEE-eCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          297 -------KLQVEEYP-------TLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 -------~~~i~~~P-------ti~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                             .+.+..+|       +.+++ ++|..  ..++.|..+.+.|.+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKV--VGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCE--EEEECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCE--EEEeCCCCCHHHHHHHHHHHh
Confidence                   00134568       66666 45544  346788889999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.51  E-value=9.2e-08  Score=80.97  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=79.2

Q ss_pred             CCceeec-Cccccccccc---CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          101 FPLVTKL-TDINSASVHS---SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l-~~~~~~~~~~---~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ...|.++ +.++|...+.   .+.+++|.||++| ++|+.+.+.|.++|.+|.+ +.|+.||++. .   .++..|+|.+
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~---~l~~~~~I~~  185 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-T---GAGDRFSSDV  185 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-H---CCTTSSCTTT
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-H---HHHHHCCCCC
Confidence            3467778 7888888663   3667889999999 9999999999999999986 9999999976 3   6889999999


Q ss_pred             CCCceEEEEeCCCcccc-cC---CC-CCCHHHHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKF-LL---ES-DLTPSNIEEFCSRL  210 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y-~~---~~-~~~~~~i~~fi~~~  210 (360)
                      . |+++++.++.....+ -+   .| .++.+.|..|+..+
T Consensus       186 ~-PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          186 L-PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             C-SEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             C-CEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            9 998655432211122 11   12 26788999999885

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.50  E-value=2.2e-06  Score=81.35  Aligned_cols=182  Identities=11%  Similarity=0.064  Sum_probs=124.2

Q ss_pred             HHHHHHHhhh--CCeEEEEEecCCC-C-ccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            6 VNEAEEFLKK--YQTFVLGMFKKFE-G-SDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         6 ~~~~~~~~~~--~~~~vv~ff~~~~-~-~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      .++|+.+++.  +++.++.|..+.+ + +..+...++|.+.+.+++-...+.      . .   ..|++.+.+.+....+
T Consensus         7 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~------~-~---~~p~~~~~~~~~~~~i   76 (521)
T 1hyu_A            7 KTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTL------P-V---RKPSFLITNPGSQQGP   76 (521)
T ss_dssp             HHHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTTS------S-S---CSSEEEEECTTCCCSC
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEcCCc------c-c---CCCEEEEecCCCcceE
Confidence            4677777764  5677776654321 1 334455567777888887433111      0 1   4699999987655667


Q ss_pred             ccCCCCChHHHHHHHhh----ccCCceeecCcccccccccCCC-ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEE
Q 018164           82 GYEETFIMDKILQFLNY----NKFPLVTKLTDINSASVHSSPI-KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTA  155 (360)
Q Consensus        82 ~y~g~~~~~~l~~fi~~----~~~p~v~~l~~~~~~~~~~~~~-~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~  155 (360)
                      .|.|--.=.++..|+..    ...|  ..++++.++.+..... ..+..|+++| +.|+.+.+.+.+++..+. ++.+..
T Consensus        77 ~f~g~p~g~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~  153 (521)
T 1hyu_A           77 RFAGSPLGHEFTSLVLALLWTGGHP--SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTA  153 (521)
T ss_dssp             EEESCCCGGGHHHHHHHHHHHTTCC--CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEE
T ss_pred             EEeccCcchhHHHHHHHHHhhcCCC--CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEE
Confidence            88764344556666553    3333  4577777776644333 4467778899 999999999999999987 699999


Q ss_pred             EeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          156 VDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       156 vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +|.+.++   ++.+.+||.+. |+++ + ++   ... ..|..+.+.|.+|+...
T Consensus       154 vd~~~~~---~~~~~~~i~sv-Pt~~-i-~g---~~~-~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          154 IDGGTFQ---NEITERNVMGV-PAVF-V-NG---KEF-GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EETTTCH---HHHHHTTCCSS-SEEE-E-TT---EEE-EESCCCHHHHHHHHCCS
T ss_pred             EechhhH---HHHHHhCCCcc-CEEE-E-CC---EEE-ecCCCCHHHHHHHHhhc
Confidence            9999876   89999999988 9984 3 22   122 24778899999998653

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.49  E-value=8.4e-07  Score=68.87  Aligned_cols=94  Identities=12%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC------------------------cccchhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD------------------------EDLAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~------------------------~~~~~~l~~~~g  172 (360)
                      .+++.++.|+++| +.|....+.+.++++++.+++.|+.++++.                        ......+++.||
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            4567889999999 999999999999999999889999998642                        011237899999


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +... |+++ +++.++...+.+.|..+.+.+.++++..++.
T Consensus       108 v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A          108 NEYV-PAYY-VFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             CCCS-SEEE-EECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             CCCC-CEEE-EECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            9988 9885 5544444445557778999999999998764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=97.87  E-value=1.6e-08  Score=77.16  Aligned_cols=100  Identities=9%  Similarity=0.062  Sum_probs=76.8

Q ss_pred             cccccccCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          111 NSASVHSSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       111 ~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      .+......+.+++|.||++| +.|+.+.+.+   .++++.+.+++.++.+|++... +..+++.|||.++ |+++ +++.
T Consensus        11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~v~~~-Pt~~-~~d~   87 (130)
T 2lst_A           11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE-GQELARRYRVPGT-PTFV-FLVP   87 (130)
Confidence            34444456678889999999 9999999999   9999999888999999985321 2378999999999 9985 4432


Q ss_pred             C-Ccc--cccCCCCCCHHHHHHHHHHHhcC
Q 018164          187 K-AIS--KFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       187 ~-~~~--~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      . +..  ...+.|..+.+.|.++++..+++
T Consensus        88 ~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           88 KAGAWEEVGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            2 222  34457888999999999998764

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.48  E-value=1.4e-06  Score=66.53  Aligned_cols=90  Identities=8%  Similarity=0.124  Sum_probs=70.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc-------------------ccchhHHhhcCCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-------------------DLAKPFLTLFGLEESK  177 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~-------------------~~~~~l~~~~gi~~~~  177 (360)
                      .+++.++.|+++| +.|....+.+.++++++. .+.|+.|+++..                   .....+++.||+.+. 
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-  100 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC-
Confidence            4567889999999 999999999999999998 799999998761                   001378899999988 


Q ss_pred             CceEEEEeCCCcccccCC---CCCCHHHHHHHHHHHh
Q 018164          178 NTVVTAFDNKAISKFLLE---SDLTPSNIEEFCSRLL  211 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~---~~~~~~~i~~fi~~~~  211 (360)
                      |+++ +++.++... .+.   |..+.+.|.+++++.+
T Consensus       101 P~~~-lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          101 PAFV-FYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SEEE-EECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CEEE-EECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            9885 444333333 456   8889999999998864

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.46  E-value=2.4e-07  Score=75.04  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------------------CCC--CC-----C-C
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------------------NEH--PK-----L-Q  299 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------------------~~~--~~-----~-~  299 (360)
                      .+++++|.||++||+.|....|.+.++.+.+++. ++.+..|.++.                   ..+  +-     . +
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILG  115 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccC
Confidence            4679999999999999999999999999999763 58888887653                   100  00     0 0


Q ss_pred             -------------CCCCcE----EEEE-eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          300 -------------VEEYPT----LLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       300 -------------i~~~Pt----i~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                                   ..+.|+    .+++ ++|..  ..++.|..+.+.|.+.|.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i--~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          116 SEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV--VKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCE--EEEECTTCCGGGTHHHHHHHHH
T ss_pred             ccccHHHHHHHhcCCCCccccceEEEECCCCCE--EEEECCCCCHHHHHHHHHHHHH
Confidence                         112676    5555 45544  3467888888888887777664

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.46  E-value=4.9e-07  Score=71.50  Aligned_cols=85  Identities=11%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             ccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------C-CC-CCCCCC-
Q 018164          249 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------------N-EH-PKLQVE-  301 (360)
Q Consensus       249 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~-~~-~~~~i~-  301 (360)
                      ++++|.|| ++||++|....+.+.++++.+++. ++.++.|+++.                       + .+ ..+++. 
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~  115 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN  115 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence            48999998 999999999999999999999753 68888888753                       1 12 245777 


Q ss_pred             ---CCc--EEEEEeCCCccCceEecCCC----CHHHHHHHHHH
Q 018164          302 ---EYP--TLLFYPAGDKANPIKVSARS----SSKNIAAFIKE  335 (360)
Q Consensus       302 ---~~P--ti~~~~~g~~~~~~~~~g~~----~~~~l~~~i~~  335 (360)
                         ++|  +++++..++++ ...+.|..    ..+.+.+.|++
T Consensus       116 ~~~~~p~~~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          116 EQAGIANRGTFVVDRSGII-RFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTTTEECSEEEEECTTSBE-EEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccCCCeeeeEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHH
Confidence               889  77777544443 23455643    45677776664

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.45  E-value=2.8e-07  Score=64.49  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=55.7

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----CC-CCC--CCCCcEEEEEeCCCccCceEecC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HP-KLQ--VEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~-~~~--i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      .++.|+++||++|+.+.+.+++++..+.   ++.+..+|++.+.     +. .++  +.++|++  |.+|..+     .|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i-----~~   71 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI-----GG   71 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE-----ES
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEE-----EC
Confidence            3678999999999999999999998765   4888889986642     22 356  8999998  3355332     23


Q ss_pred             CCCHHHHHHHHHHhc
Q 018164          323 RSSSKNIAAFIKEQL  337 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~  337 (360)
                         .+.|.+++.+..
T Consensus        72 ---~~~l~~~~~~~~   83 (85)
T 1ego_A           72 ---YTDFAAWVKENL   83 (85)
T ss_dssp             ---SHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhc
Confidence               368888888765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.42  E-value=4.9e-07  Score=74.17  Aligned_cols=89  Identities=9%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC---------------C-CC-----------CCCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------------N-EH-----------PKLQ  299 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------------~-~~-----------~~~~  299 (360)
                      .++++|.|| ++||++|....+.+.++.+.+++. ++.++.|+++.               + ..           ..++
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            679999999 999999999999999999999753 68888888764               1 11           1247


Q ss_pred             CC-----CCcEEEEEeCCCccCceEecCCC----CHHHHHHHHHHhcC
Q 018164          300 VE-----EYPTLLFYPAGDKANPIKVSARS----SSKNIAAFIKEQLK  338 (360)
Q Consensus       300 i~-----~~Pti~~~~~g~~~~~~~~~g~~----~~~~l~~~i~~~~~  338 (360)
                      +.     .+|+++++..+.++ ...+.|..    +.+.|.+.|++...
T Consensus       124 v~~~~g~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEI-QFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBE-EEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CcccCCCccceEEEEcCCCeE-EEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            77     89999999654443 23455543    78999999998875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.40  E-value=2.6e-06  Score=64.95  Aligned_cols=91  Identities=11%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~  176 (360)
                      .+++.++.|+++| +.|....+.+.++++++. ++.|+.++++..                    .....+++.||+.+.
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            4567889999999 999999999999999998 799999998531                    012378899999988


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+++ +++.++... .+.|..+.+.|.++++..++
T Consensus       103 -P~~~-~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          103 -PAYA-FVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             -SEEE-EECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             -ceEE-EECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence             9885 454333233 45788899999999988763

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.39  E-value=4.8e-07  Score=73.68  Aligned_cols=90  Identities=10%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------------------CC-CCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------------EH-PKL  298 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------------------~~-~~~  298 (360)
                      ..++++|.|| ++||+.|....+.+.++++.+++. ++.++.|+++..                          .+ ..+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            3589999999 999999999999999999999753 688888887641                          11 135


Q ss_pred             CCC------CCcEEEEEeCCCccCceEecCC----CCHHHHHHHHHHhcC
Q 018164          299 QVE------EYPTLLFYPAGDKANPIKVSAR----SSSKNIAAFIKEQLK  338 (360)
Q Consensus       299 ~i~------~~Pti~~~~~g~~~~~~~~~g~----~~~~~l~~~i~~~~~  338 (360)
                      ++.      .+|+++++..+.++ ...+.|.    ++.+.|.+.|++...
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVI-QAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBE-EEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            777      89999999544443 2345554    378999999987764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.38  E-value=1.4e-06  Score=70.72  Aligned_cols=88  Identities=8%  Similarity=-0.049  Sum_probs=63.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----C-C----C-----------C----------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA----N-E----H-----------P----------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----~-~----~-----------~----------  296 (360)
                      ..++++|.||++||+.|....|.+.++.+++++. ++.+..++++.    . +    +           +          
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  126 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  126 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCCh
Confidence            4679999999999999999999999999999763 58888887652    0 0    0           0          


Q ss_pred             ----CC----------C-----CCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          297 ----KL----------Q-----VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ----~~----------~-----i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                          .+          +     +...|+.+++.+++++ ..++.|..+.+.|.+.|++.
T Consensus       127 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i-~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          127 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV-VKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCE-EEEECTTSCGGGGGGGHHHH
T ss_pred             hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCE-EEeeCCCCCHHHHHHHHHHh
Confidence                00          1     2225888888554443 34677888888888888764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.38  E-value=1.1e-06  Score=69.12  Aligned_cols=92  Identities=5%  Similarity=0.001  Sum_probs=72.0

Q ss_pred             CCCceEEEEE-Eec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcc--------cchhHHhhcCCCCCCCceEEEE
Q 018164          118 SPIKLQVYVF-AKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADED--------LAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       118 ~~~~~~v~f~-~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~--------~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      .+++++|.|| ++| +.|+.+.+.+   .++++.+..++.++.+|++...        .+..+++.|||.++ |+++ ++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~-Pt~~-~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGF-PELV-FI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSS-SEEE-EE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCC-CEEE-EE
Confidence            3567889999 899 9999999999   7887777667999999987531        12478999999998 9985 55


Q ss_pred             eCCCcccccCCCCC--CHHHHHHHHHHHhc
Q 018164          185 DNKAISKFLLESDL--TPSNIEEFCSRLLH  212 (360)
Q Consensus       185 ~~~~~~~y~~~~~~--~~~~i~~fi~~~~~  212 (360)
                      +.++...+.+ |..  +.+.+.++++..+.
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            4444445556 777  89999999998875

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.37  E-value=4.2e-07  Score=74.77  Aligned_cols=89  Identities=12%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------CC------------C-
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-----------------NE------------H-  295 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------~~------------~-  295 (360)
                      .+++++|.|| ++||++|....|.+.++.+.+++. ++.+..|+++.                 ..            + 
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            4679999999 999999999999999999998753 68888888764                 11            1 


Q ss_pred             CCCCCC-----CCcEEEEEeCCCccCceEecCCC----CHHHHHHHHHHhc
Q 018164          296 PKLQVE-----EYPTLLFYPAGDKANPIKVSARS----SSKNIAAFIKEQL  337 (360)
Q Consensus       296 ~~~~i~-----~~Pti~~~~~g~~~~~~~~~g~~----~~~~l~~~i~~~~  337 (360)
                      ..+++.     .+|+++++..++++ ...+.|..    +.++|.+.|++..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKV-RHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEE-EEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            134777     89999999655554 23455543    6789999998765

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.36  E-value=4.2e-06  Score=66.25  Aligned_cols=92  Identities=11%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhc------------------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLF------------------------  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~------------------------  171 (360)
                      .+++.+|.||++| +.|....+.+.+++++++++ +.|+.|+++...   ..++.+                        
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQL---PNVKNYMKTQGIIYPVMMATPELIRAFNGY  109 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCH---HHHHHHHHHHTCCSCEEECCHHHHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCH---HHHHHHHHHcCCCCceEecCHHHHHHHhhh
Confidence            4567889999999 99999999999999999976 999999988653   445544                        


Q ss_pred             ---CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          172 ---GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       172 ---gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                         |+... |+++ +++.++...+.+.|..+.+.+.++|+..+...
T Consensus       110 ~~~~i~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A          110 IDGGITGI-PTSF-VIDASGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             STTCSCSS-SEEE-EECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             hccCCCCC-CeEE-EECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence               78887 8874 55444444455678899999999999998643

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.36  E-value=1e-06  Score=64.23  Aligned_cols=92  Identities=8%  Similarity=-0.005  Sum_probs=72.6

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCC---ccHHHHHHHHhcCCCceEEEec---cH----HHHHHcCCCCCCCCCEEE
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEG---SDYEEFVKTAAADNEIQFVETS---NF----EVAKVLYPDIKSTDHFLG   71 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~a~~~~~~~F~~~~---~~----~~~~~~~~~~~~~~p~i~   71 (360)
                      +|+|.++++++++++.+++|.|++.+|+   .....|+++++. +++.|+.+.   +.    +++.++||.  ...|++.
T Consensus        10 ~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~--h~sPq~i   86 (112)
T 3iv4_A           10 KLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVK--HESPQAF   86 (112)
T ss_dssp             ECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCC--CCSSEEE
T ss_pred             ecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCc--cCCCeEE
Confidence            5899999999999999999999999997   467788888853 778887733   33    379999996  1369999


Q ss_pred             EEecCCCCccccCCCCChHHHHHHH
Q 018164           72 IVKSEPDRYTGYEETFIMDKILQFL   96 (360)
Q Consensus        72 ~~~~~~~~~~~y~g~~~~~~l~~fi   96 (360)
                      +|+.+......-++.++.+.|.+.+
T Consensus        87 l~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           87 YFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEECCEEEEEeeccccCHHHHHHhh
Confidence            9997655455556888988888765

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=98.35  E-value=1.2e-06  Score=70.21  Aligned_cols=101  Identities=9%  Similarity=0.002  Sum_probs=73.4

Q ss_pred             cCcccccccc----cCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhH-----------
Q 018164          107 LTDINSASVH----SSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPF-----------  167 (360)
Q Consensus       107 l~~~~~~~~~----~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l-----------  167 (360)
                      .+..++...+    ..+++++|.|+++| +.|+.+.+.+   .++.+.+++++.|+.+|++...   .+           
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~~  107 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKT---PLTEPVKIMENGT  107 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCC---EEEEEEEEEETTE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCccc---ccchhhhhhhcch
Confidence            4444555443    45778999999999 9999975444   5666666667999999988653   33           


Q ss_pred             ---------------HhhcCCCCCCCceEEEEeCCCcccccCCCCCC-HHHHHHHHHHHhc
Q 018164          168 ---------------LTLFGLEESKNTVVTAFDNKAISKFLLESDLT-PSNIEEFCSRLLH  212 (360)
Q Consensus       168 ---------------~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~-~~~i~~fi~~~~~  212 (360)
                                     ++.||+.++ |+++ +++.++.....+.|..+ .+.+.+|+++.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~-Pt~~-lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANAQ-PFYV-LIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCCS-SEEE-EECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCCc-ceEE-EECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence                           688999998 9984 55544444445568887 9999999988764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.32  E-value=4.4e-06  Score=65.15  Aligned_cols=96  Identities=11%  Similarity=0.192  Sum_probs=73.6

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc-------------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------~~~~l~~~~gi~~~  176 (360)
                      .+++.++.|+++| +.|....+.+.++++++.+ .+.|+.|+++...                   ....+++.||+...
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            4567888999999 9999999999999999986 4889888876420                   01268899999988


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCcc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                       |+++ +++.++...+.+.|..+.+.|.++++..+.+..
T Consensus       105 -P~~~-lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          105 -PTTF-LINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             -CEEE-EECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             -CeEE-EECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence             8884 554444444455688899999999999987644

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.31  E-value=5.7e-06  Score=64.60  Aligned_cols=95  Identities=13%  Similarity=0.038  Sum_probs=73.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC-----------------------CcccchhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA-----------------------DEDLAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~-----------------------~~~~~~~l~~~~g  172 (360)
                      .++++++.|+.+| +.|....+.+.++++++.++ +.++.++.+                       ..   ..+++.||
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~  103 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDAD---KAVGQAFG  103 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSS---CHHHHHHT
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCch---HHHHHHcC
Confidence            4567889999999 99999999999999999864 888776532                       22   37889999


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCccCC
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      +... |+++ +++.++...+.+.|..+.+.|.++|+..+.+.-.+
T Consensus       104 i~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~  146 (153)
T 2l5o_A          104 TQVY-PTSV-LIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAE  146 (153)
T ss_dssp             CCSS-SEEE-EECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSC
T ss_pred             CCcc-CeEE-EECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhc
Confidence            9988 9885 55444334444578899999999999999875544

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.29  E-value=7.2e-07  Score=65.30  Aligned_cols=72  Identities=10%  Similarity=-0.117  Sum_probs=56.9

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC------CcccchhHHhhcCCCCCCCceEEEEeCCCcccc
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA------DEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF  192 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~------~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y  192 (360)
                      .+.++.||++| ++|+.+.+.|.++++++.      .+|++      ..   ..+++.|||.++ |+++ +  +  +.. 
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~---~~l~~~~~V~~~-PT~~-i--~--G~~-   76 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQ---AQECTEAGITSY-PTWI-I--N--GRT-   76 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCC---CHHHHHTTCCSS-SEEE-E--T--TEE-
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchh---HHHHHHcCCeEe-CEEE-E--C--CEE-
Confidence            34578999999 999999999999998775      45555      33   389999999999 9974 4  2  233 


Q ss_pred             cCCCCCCHHHHHHHHH
Q 018164          193 LLESDLTPSNIEEFCS  208 (360)
Q Consensus       193 ~~~~~~~~~~i~~fi~  208 (360)
                       +.|..+.+.|.+|+.
T Consensus        77 -~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           77 -YTGVRSLEALAVASG   91 (106)
T ss_dssp             -EESCCCHHHHHHHHT
T ss_pred             -ecCCCCHHHHHHHhC
Confidence             478999999999873

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.28  E-value=3.4e-06  Score=67.50  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             cCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCCC-CEEEEEEeCCCC-C----C----CC------------------
Q 018164          247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-E----H----PK------------------  297 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~~-~~~~~~id~~~~-~----~----~~------------------  297 (360)
                      ..++++|.||++||+ .|....+.+.++.+.++... ++.++.|+++.. +    +    .+                  
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            467899999999999 99999999999999986532 488888887521 0    0    00                  


Q ss_pred             -------------------CCCCCCcEEEEEeCCCccCceEecCCC--CHHHHHHHHHHhcC
Q 018164          298 -------------------LQVEEYPTLLFYPAGDKANPIKVSARS--SSKNIAAFIKEQLK  338 (360)
Q Consensus       298 -------------------~~i~~~Pti~~~~~g~~~~~~~~~g~~--~~~~l~~~i~~~~~  338 (360)
                                         +++...|+++++..+.++ ...+.|..  +.+.|.+.|++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i-~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKV-LKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEE-EEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeE-EEEEcCCCCCCHHHHHHHHHHHHh
Confidence                               134568988888655554 34566765  58999999998765

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.28  E-value=4.1e-06  Score=57.06  Aligned_cols=72  Identities=10%  Similarity=0.165  Sum_probs=58.2

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC-CH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL-TP  200 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~-~~  200 (360)
                      .+.||++| +.|+.+.+.+.++++++.+++.++.+|   .   ..+++.+|+.+. |+++ +  ++ ....  .|.. +.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~---~~~~~~~~v~~~-Pt~~-~--~G-~~~~--~G~~~~~   69 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---E---MDQILEAGLTAL-PGLA-V--DG-ELKI--MGRVASK   69 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---S---HHHHHHHTCSSS-SCEE-E--TT-EEEE--CSSCCCH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---C---HHHHHHCCCCcC-CEEE-E--CC-EEEE--cCCCCCH
Confidence            47899999 999999999999999999889999998   3   378999999999 9985 3  22 1222  2776 88


Q ss_pred             HHHHHHH
Q 018164          201 SNIEEFC  207 (360)
Q Consensus       201 ~~i~~fi  207 (360)
                      +.|.+|+
T Consensus        70 ~~l~~~l   76 (77)
T 1ilo_A           70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8888775

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.27  E-value=3.5e-06  Score=65.05  Aligned_cols=88  Identities=10%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc----------------------ccchhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE----------------------DLAKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~----------------------~~~~~l~~~~gi  173 (360)
                      .++++++.||++| +.|....+.+.++++++. ..+.|+.|+++..                      .....+++.||+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            5668889999999 999999999999999998 5699999988530                      001378999999


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      ... |+++ +++.++...+.+.|..+.+.|.+++
T Consensus       113 ~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITI-PTSF-LLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEE-SEEE-EECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             Ccc-CeEE-EEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            988 8884 5544444444557889999998887

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.27  E-value=6.9e-06  Score=64.09  Aligned_cols=96  Identities=8%  Similarity=0.085  Sum_probs=73.8

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc---------------------cchhHHhhcC--
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED---------------------LAKPFLTLFG--  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~---------------------~~~~l~~~~g--  172 (360)
                      .+++++|.||++| +.|....+.|.++++++++ .+.++.|+++..+                     ....+++.||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            4567889999999 8999999999999999964 5999999886211                     1235778888  


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCcc
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                      +... |+.+ +++.++...+.+.|..+.+.|.++++....+.-
T Consensus       103 v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          103 VGVL-PFTV-VEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             SCCS-SEEE-EEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             cCCC-CEEE-EECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            7777 8874 555554556667899999999999999887643

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.23  E-value=5.1e-07  Score=62.50  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KLQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      ++.|+++||++|+.+.+.++++        ++.+..+|++.+ +..    .+++.++|+++  .+|..     . +..+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~-----~-~g~~~   66 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS-----W-SGFRP   66 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE-----E-ESCCH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE-----E-ecCCH
Confidence            6789999999999999988764        356778898876 332    36889999983  35532     2 33567


Q ss_pred             HHHHHHHHHhc
Q 018164          327 KNIAAFIKEQL  337 (360)
Q Consensus       327 ~~l~~~i~~~~  337 (360)
                      +.|.++|.+++
T Consensus        67 ~~l~~~l~~~~   77 (81)
T 1h75_A           67 DMINRLHPAPH   77 (81)
T ss_dssp             HHHGGGSCCC-
T ss_pred             HHHHHHHhccc
Confidence            77777776543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.21  E-value=7.7e-06  Score=68.15  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=58.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA----------------------------------  292 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----------------------------------  292 (360)
                      +.+.+++.|+++||++|+.+.+.++++++.     ++.+..+....                                  
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            467899999999999999999999988752     35554443211                                  


Q ss_pred             -----CCC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          293 -----NEH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       293 -----~~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                           ..+       ..++|+++||++ +.+|.     .+.|..+.+.|.++|.+..
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~v-~~dG~-----~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAVV-LSNGT-----LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSC-----EEESCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEEE-EcCCe-----EecCCCCHHHHHHHHHHhh
Confidence                 011       134899999994 55552     4679999999999998764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.20  E-value=2e-05  Score=61.31  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCccc--------------------chhHHhhcCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL--------------------AKPFLTLFGLEE  175 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~--------------------~~~l~~~~gi~~  175 (360)
                      .+++.++.|+++| +.|....+.+.++++++.++ +.|+.|+++....                    ...+++.||+..
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            3567888999999 99999999999999999864 9999998875410                    126788999998


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      . |+++ +.+.++...+.+.|..+.+.|.++++..+++.
T Consensus       109 ~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          109 I-PRFI-LLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             S-CCEE-EECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             C-CEEE-EECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence            8 9884 55544444555678889999999999988653

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.19  E-value=3.2e-06  Score=63.57  Aligned_cols=95  Identities=6%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             eEEEcC-ccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-CCCCCCCCcEEEEE
Q 018164          232 VQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pti~~~  309 (360)
                      +..|+. ..+.+++ ..+..++|-|+++||+.|   .+.|.++|+.+ .  ++.|+..+.  .++ ..++++ .|++++|
T Consensus        23 ~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~--d~~F~~t~~--~~v~~~~~v~-~~~vvlf   92 (124)
T 2l4c_A           23 PTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-P--GVSFGISTD--SEVLTHYNIT-GNTICLF   92 (124)
T ss_dssp             CEECCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T--TSEEEEECC--HHHHHHTTCC-SSCEEEE
T ss_pred             ceEcCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-C--CceEEEECh--HHHHHHcCCC-CCeEEEE
Confidence            444543 6677776 557789999999999999   56899999999 5  789987753  233 356776 7999999


Q ss_pred             eCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          310 PAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       310 ~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      +.+... ++.|.|    ..+.+.|.+||..+.
T Consensus        93 kkfde~-~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           93 RLVDNE-QLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             ETTTTE-EEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             EcCCCC-ceeecCcccCCCCHHHHHHHHHHhc
Confidence            987643 567886    789999999999864

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.19  E-value=1.9e-06  Score=69.20  Aligned_cols=82  Identities=12%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------------------------  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------------------------  294 (360)
                      +.+.+++.|+++||++|..+.|.+.++.+.+.   ++.+...+.....                                
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            45678999999999999999999999988764   4666666543210                                


Q ss_pred             --------------------------------C-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          295 --------------------------------H-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       295 --------------------------------~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                                                      +       ..++|.++||+++  +| +    .+.|..+.+.|.++|.+
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g-~----~~~G~~~~~~l~~~i~~  170 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED-A----LVPGFVEQSQLQDAVDR  170 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-E----EECSCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC-E----EeeCCCCHHHHHHHHHH
Confidence                                            1       1348999999987  44 2    56799999999999987


Q ss_pred             hcC
Q 018164          336 QLK  338 (360)
Q Consensus       336 ~~~  338 (360)
                      .+.
T Consensus       171 ~l~  173 (175)
T 3gyk_A          171 ARK  173 (175)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.17  E-value=2.6e-05  Score=60.24  Aligned_cols=90  Identities=10%  Similarity=0.051  Sum_probs=68.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhh-cCc-eEEEEEeCCCccc----------------------chhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNF-KGK-IMFTAVDIADEDL----------------------AKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~-~~~-i~f~~vd~~~~~~----------------------~~~l~~~~g  172 (360)
                      .++++++.||++| +.|....+.+.++++++ .++ +.|+.|+++...-                      ...+++.||
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4567889999999 99999999999999999 665 8999888774210                      137899999


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +... |+++ +++.++...+.+.   +.+.+.++++..++
T Consensus       112 v~~~-P~~~-lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTL-PTNI-LLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSS-SEEE-EECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCc-CEEE-EECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            9998 9884 5544433333222   88999999998774

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.16  E-value=1.1e-05  Score=62.50  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=67.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchh-------------------------HHhh
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKP-------------------------FLTL  170 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~-------------------------l~~~  170 (360)
                      .+++.++.|+++| +.|....+.+.+++++++++ +.|+.|+++...   .                         +++.
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD---EEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSS---HHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCH---HHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            4567889999999 99999999999999999876 999999988553   4                         8899


Q ss_pred             cCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          171 FGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       171 ~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ||+... |+++ +.+.++...+.+.|..+.+.+.+.+.+.+
T Consensus       107 ~~i~~~-P~~~-lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          107 YDIYAT-PVLY-VLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             HCCCSS-CEEE-EECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             cCcCCC-CEEE-EECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            999988 8884 55544444455556555555555555443

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.15  E-value=8.8e-07  Score=70.48  Aligned_cols=94  Identities=12%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchh-HHhhcCCC--CCCCceEEEEeCCCcc
Q 018164          115 VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKP-FLTLFGLE--ESKNTVVTAFDNKAIS  190 (360)
Q Consensus       115 ~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~-l~~~~gi~--~~~p~~~~~~~~~~~~  190 (360)
                      ....+.+++|.||++| +.|+.+.+.|.++++.+...+.|+.||++..+   . ++..+++.  .+ |+++ +++.++..
T Consensus        42 ~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~---~~~~~~~~~~~~~~-Pt~~-~~d~~G~~  116 (164)
T 1sen_A           42 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE---EPKDEDFSPDGGYI-PRIL-FLDPSGKV  116 (164)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGG---SCSCGGGCTTCSCS-SEEE-EECTTSCB
T ss_pred             HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCc---hHHHHHhcccCCcC-CeEE-EECCCCCE
Confidence            3345678899999999 99999999999988777656778888887654   3 67788884  46 8884 55433323


Q ss_pred             cccCCC----------CCCHHHHHHHHHHHhcC
Q 018164          191 KFLLES----------DLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       191 ~y~~~~----------~~~~~~i~~fi~~~~~g  213 (360)
                      ...+.|          ..+.+.|.++++..+..
T Consensus       117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A          117 HPEIINENGNPSYKYFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCccchhcccCCHHHHHHHHHHHHHh
Confidence            333344          37889999999988753

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.11  E-value=4.1e-06  Score=69.53  Aligned_cols=79  Identities=13%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC----------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA----------------------------------  292 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~----------------------------------  292 (360)
                      +.+.+++.|+++||++|+.+.+.++++.+.     ++.+..+....                                  
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            467899999999999999999999987652     24444433221                                  


Q ss_pred             -----CCC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          293 -----NEH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       293 -----~~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                           ..+       ..++|+++||+++ .+|.     .+.|..+.+.|.++|.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~-----~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STGE-----LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC-----CCCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE-----EecCCCCHHHHHHHHHhc
Confidence                 001       1348999999988 5664     357888999999999753

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.11  E-value=5.3e-06  Score=68.32  Aligned_cols=88  Identities=14%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CC-----------C
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EH-----------P  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~-----------~  296 (360)
                      .+.++|.|| ++||+.|....+.+.++++.+++. ++.++.|+++..                   ..           .
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~-~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            579999999 999999999999999999999752 688888887641                   11           1


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      .+++.      .+|+++++..++++. ..+.|    .++.+++.+.|+...
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~-~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLR-QITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEE-EEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEE-EEEeCCCCCCCCHHHHHHHHHHhh
Confidence            23676      899999996554542 23334    356799999888765

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.10  E-value=2.4e-05  Score=60.97  Aligned_cols=93  Identities=12%  Similarity=0.071  Sum_probs=70.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCccc----------------------chhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL----------------------AKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~----------------------~~~l~~~~gi  173 (360)
                      .++++++.|+++| +.|....+.+.++++++.++ +.++.|+++....                      ...+++.||+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4567889999999 99999999999999999875 9999998885200                      1378899999


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCcc
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                      ... |+++ +++.++...+.+   .+.+.+.++++..+.+..
T Consensus       108 ~~~-P~~~-lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          108 VGF-PHII-LVDPEGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CSS-CEEE-EECTTSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             CcC-CeEE-EECCCCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            988 8884 554443333332   356789999999886543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.10  E-value=1.7e-05  Score=62.34  Aligned_cols=94  Identities=13%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             CCCceEEEEEEec-cchHH-HHHHHHHHHHhhcCc-eEEEEEeCCC-------------------------cccchh---
Q 018164          118 SPIKLQVYVFAKA-DDLKS-LLEPLEDIARNFKGK-IMFTAVDIAD-------------------------EDLAKP---  166 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~-~~~~~~~la~~~~~~-i~f~~vd~~~-------------------------~~~~~~---  166 (360)
                      .+++++|.||++| +.|.. ..+.+.+++++|+++ +.|+.|+++.                         ......   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            3567889999999 99999 699999999999865 8998887520                         000013   


Q ss_pred             ---HHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          167 ---FLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       167 ---l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                         +.+.||+.+. |+.+ +++.++...+.+.|..+.+.+.++|+..++.
T Consensus       109 ~~~~~~~~~v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          109 IPSTMKKYRLEGT-PSII-LADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SCHHHHHTTCCSS-SEEE-EECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhHHHhcccCcc-ceEE-EECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence               8889999988 8884 5555444555567889999999999998864

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.10  E-value=3.5e-06  Score=66.71  Aligned_cols=108  Identities=7%  Similarity=-0.045  Sum_probs=75.5

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCC------------------c-
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIAD------------------E-  161 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~------------------~-  161 (360)
                      .+..++.+.+......+++++|.||++| ++|....+.|.+++++|+. .+.++.|..+.                  . 
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            3445555555443345678899999999 9999999999999999752 36665554321                  0 


Q ss_pred             ------ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          162 ------DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       162 ------~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                            +....+++.||+... |+++ +++.++...+.+.|..+.+.|.++++..+.
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVY-PSWA-LIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSS-SEEE-EECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             cceEEEcCchHHHHHcCCCcc-ceEE-EECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  001378899999988 9885 554444444555788899999999998764

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.09  E-value=2.2e-05  Score=59.68  Aligned_cols=91  Identities=14%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc-------------------------ccchhHHhhc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-------------------------DLAKPFLTLF  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~-------------------------~~~~~l~~~~  171 (360)
                      .+++.++.|+++| +.|....+.+.++++++...+.++.+++...                         .....+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            4567888999999 9999999999999999887899998854210                         0012688899


Q ss_pred             CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       172 gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      |+.+. |+++ +.+.++...+.+.|..+.+.+.++++..
T Consensus       101 ~v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          101 GVRSY-PTQA-FIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TCCSS-SEEE-EECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             CcccC-CeEE-EECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99988 8885 5544444445557888999999988763

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.08  E-value=6.1e-06  Score=67.85  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=62.7

Q ss_pred             cCccEEEEEeCCCChh-hHHHHHHHHHHHHHhcC--CCCEEEEEEeCCCC-C----------------------------
Q 018164          247 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKG--LDNLVIAKIDASAN-E----------------------------  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~-c~~~~~~~~~la~~~~~--~~~~~~~~id~~~~-~----------------------------  294 (360)
                      .+++++|.||++||++ |....|.+.++.+.+..  ..++.+..|+++.. +                            
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            4689999999999997 99999999998887752  12677777776631 1                            


Q ss_pred             C-CCCCCC-CC---------------cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          295 H-PKLQVE-EY---------------PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       295 ~-~~~~i~-~~---------------Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      + ..+++. ..               |+++++..++++ ...+.|..+.+.+.+.|.+.+....
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i-~~~~~g~~~~~~~~~~i~~~l~~l~  182 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQF-VDALGRNYDEKTGVDKIVEHVKSYV  182 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCE-EEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcE-EEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            0 112343 23               366666444443 2457787888888888887776543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.08  E-value=9.7e-06  Score=63.38  Aligned_cols=91  Identities=11%  Similarity=0.022  Sum_probs=70.8

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC--Cc----------------------ccchhHHhhcCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA--DE----------------------DLAKPFLTLFGLE  174 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~--~~----------------------~~~~~l~~~~gi~  174 (360)
                      ++.+|.|+++| +.|....+.+.++++++  .+.|+.|+++  ..                      .....+++.||+.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            67889999999 99999999999999999  5888888881  00                      0124788999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      .. |+++ +++.++...+.+.|..+.+.|.++|++.+.+.
T Consensus       109 ~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          109 GQ-PWTF-VVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             SS-CEEE-EECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             cc-cEEE-EECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            88 8874 55444444455578899999999999987643

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.08  E-value=7.7e-06  Score=68.35  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CC-----------C
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EH-----------P  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~-----------~  296 (360)
                      .++++|+|| ++||+.|....+.+.++++.++.. ++.++.|.++..                   ..           .
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            589999999 999999999999999999999642 688888877531                   11           1


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhcC
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~~  338 (360)
                      .+++.      .+|+++++..+.++ ...+.|    .++.+++.+.|+....
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I-~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVI-KHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBE-EEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHhhh
Confidence            34676      89999999554444 123334    3677999999987653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.08  E-value=2.9e-05  Score=61.42  Aligned_cols=91  Identities=12%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC------------------Ccc--------------c-
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA------------------DED--------------L-  163 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~------------------~~~--------------~-  163 (360)
                      .+++++|.||+.| +.|....+.+.+++++++ .+.|+.|+++                  ...              + 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            4567889999999 999999999999999999 7999999886                  220              0 


Q ss_pred             ----chhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC-CHHHHHHHHHHHhcC
Q 018164          164 ----AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL-TPSNIEEFCSRLLHG  213 (360)
Q Consensus       164 ----~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~-~~~~i~~fi~~~~~g  213 (360)
                          ...+++.||+... |+++ +++.++...+  .|.. +.+.|.++++..++|
T Consensus       115 ~~~d~~~~~~~~~v~~~-P~~~-lid~~G~i~~--~g~~~~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSI-DYIV-IMDKSSNVLY--AGTTPSLGELESVIKSVQGG  165 (165)
T ss_dssp             EEECCSHHHHHTTCCSS-SEEE-EEETTCCEEE--EEESCCHHHHHHHHHHC---
T ss_pred             EEeChHHHHHHhCCCCc-eEEE-EEcCCCcEEE--eCCCCCHHHHHHHHHHHhcC
Confidence                0167888999988 9885 5544433333  5777 899999999987754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.07  E-value=7.1e-06  Score=55.56  Aligned_cols=66  Identities=23%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-C---CCCCCCCcEEEEEeCCCccCceEecCCCCH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-P---KLQVEEYPTLLFYPAGDKANPIKVSARSSS  326 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~---~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~  326 (360)
                      ++.|+++||++|+.+.+.++++        ++.+..+|++.+ +. .   .+++.++|+++.  +| .    ...| .+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g-~----~~~g-~~~   66 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-E----HWSG-FRP   66 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-E----EEES-CCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CC-e----EEcC-CCH
Confidence            6789999999999999888865        356777888876 32 2   568899999973  44 2    2334 567


Q ss_pred             HHHHHHH
Q 018164          327 KNIAAFI  333 (360)
Q Consensus       327 ~~l~~~i  333 (360)
                      +.|.++|
T Consensus        67 ~~l~~~l   73 (75)
T 1r7h_A           67 ERIKQLQ   73 (75)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7887776

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.06  E-value=6.5e-06  Score=67.19  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------C----------C-
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------E----------H-  295 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~----------~-  295 (360)
                      ..++++|.|| ++||+.|....+.+.++++.+++. ++.++.|+++..                   .          + 
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            4679999999 999999999999999999999642 688888877531                   0          1 


Q ss_pred             CCCCCC-----CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          296 PKLQVE-----EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       296 ~~~~i~-----~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      ..+++.     .+|+++++..++++ ...+.|    .++.+++.+.|....
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVV-QHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBE-EEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEE-EEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            134777     79999999554444 223444    246788888888764

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.04  E-value=1.5e-05  Score=64.92  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +.+++++.|+++||++|..+.|.+.++.+.+.+  ++.|..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehh
Confidence            467899999999999999999999999998876  7888777663

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.02  E-value=1.2e-05  Score=66.86  Aligned_cols=89  Identities=16%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CC-----------
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EH-----------  295 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~-----------  295 (360)
                      ..++++|.|| ++||+.|....+.+.++++++++. ++.++.|.++..                   ..           
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHER-NVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            4578999999 999999999999999999999642 688888876541                   01           


Q ss_pred             CCCCCC-----CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          296 PKLQVE-----EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       296 ~~~~i~-----~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      ..+++.     .+|+++++..+.++ ...+.|    .++.+++.+.|+...
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i-~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIV-QHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBE-EEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            124666     78999999655554 223333    356899999888764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.00  E-value=3.9e-05  Score=60.86  Aligned_cols=87  Identities=11%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             cCccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC------------------------CCCCC
Q 018164          247 SHKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH------------------------PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~------------------------~~~~i  300 (360)
                      .+++++|.||++| |++|....|.+.++++.+ .  ++.++.|+.+.. .+                        ..+++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            3679999999999 999999999999999999 3  678888877641 11                        01244


Q ss_pred             CC------CcEEEEEeCCCccCceEecC-----CCCHHHHHHHHHHhc
Q 018164          301 EE------YPTLLFYPAGDKANPIKVSA-----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       301 ~~------~Pti~~~~~g~~~~~~~~~g-----~~~~~~l~~~i~~~~  337 (360)
                      ..      .|+++++..++++ ...+.|     ..+.+.+.+.|++.+
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i-~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKV-VYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCE-EEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcE-EEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            43      4999988655454 234433     235688888888654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.00  E-value=4.2e-05  Score=59.49  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCccc-------------------chhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL-------------------AKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~-------------------~~~l~~~~gi~~~  176 (360)
                      .++++++.|+++| +.|....+.+.++++++.++ +.++.|+++....                   ...+++.||+...
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4567888899999 99999999999999999876 8999888774320                   0156788999988


Q ss_pred             CCceEEEEeCCCcccccCCCC--CCHHHHHHHHHHHhcCc
Q 018164          177 KNTVVTAFDNKAISKFLLESD--LTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~--~~~~~i~~fi~~~~~g~  214 (360)
                       |+++ +++.++...+.+.|.  .+.+.|.++|++.+.+.
T Consensus       107 -P~~~-lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          107 -PTSF-LIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             -SEEE-EECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             -CeEE-EECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence             8884 554444444444453  46689999999988654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.99  E-value=3.9e-05  Score=64.10  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             cCccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CC-----------
Q 018164          247 SHKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EH-----------  295 (360)
Q Consensus       247 ~~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~-----------  295 (360)
                      ..++++|.||+ .||++|....|.+.++.+++++. ++.++.|.++..                   ..           
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR-NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            36799999996 99999999999999999999753 588888887641                   11           


Q ss_pred             CCCCCC------CCcEEEEEeCCCccCceEecCC----CCHHHHHHHHHHh
Q 018164          296 PKLQVE------EYPTLLFYPAGDKANPIKVSAR----SSSKNIAAFIKEQ  336 (360)
Q Consensus       296 ~~~~i~------~~Pti~~~~~g~~~~~~~~~g~----~~~~~l~~~i~~~  336 (360)
                      ..+++.      .+|+++++....++ ...+.|.    ...+++++.|+..
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I-~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGIL-RQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEE-EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence            124666      78999999655554 2334342    4577888877653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.96  E-value=4.9e-05  Score=59.24  Aligned_cols=94  Identities=12%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCc-c-------------------cchhHHhhcCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE-D-------------------LAKPFLTLFGLEE  175 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~-~-------------------~~~~l~~~~gi~~  175 (360)
                      .+++.+|.|+.+| +.|....+.+.++++++.+ .+.++.|+.+.. .                   ....+++.||+..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            4567888999999 9999999999999999987 588888888753 1                   0124788999998


Q ss_pred             CCCceEEEEeCCCcccccCCCC--CCHHHHHHHHHHHhcC
Q 018164          176 SKNTVVTAFDNKAISKFLLESD--LTPSNIEEFCSRLLHG  213 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~--~~~~~i~~fi~~~~~g  213 (360)
                      . |+.+ +.+.++...+.+.|.  .+.+.+.++|+....+
T Consensus       107 ~-P~~~-lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          107 V-PETF-VIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK  144 (154)
T ss_dssp             B-CEEE-EECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred             C-CeEE-EECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence            8 8774 444444344444554  4778999999887654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.95  E-value=6.1e-05  Score=60.69  Aligned_cols=90  Identities=10%  Similarity=0.140  Sum_probs=67.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-e------EEEEEeCCC-cccchhHHhhc-----------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-I------MFTAVDIAD-EDLAKPFLTLF-----------------  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i------~f~~vd~~~-~~~~~~l~~~~-----------------  171 (360)
                      .+++++|.||.+| ++|....+.|.+++++|+++ +      .|+.|+++. ..   ..++.|                 
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~---~~~~~~~~~~~~~~~~~~d~~~~  134 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSR---DIAQDFVTDNGLDYPSIYDPPFM  134 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCH---HHHHHHHHHTTCCSCEEECTTCG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCH---HHHHHHHHHcCCCccEEECCcch
Confidence            4567889999999 99999999999999999865 7      999999886 32   333333                 


Q ss_pred             --------CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          172 --------GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       172 --------gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                              ++... |+.+ +++.++...+.+.|..+.+.|.++++..+.
T Consensus       135 ~~~~~~~~~v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          135 TAASLGGVPASVI-PTTI-VLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGGGTTTCCTTCC-SEEE-EECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCCC-CeEE-EECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                    45566 7764 454444445556788899999999998874

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.94  E-value=5.9e-05  Score=63.82  Aligned_cols=170  Identities=11%  Similarity=0.106  Sum_probs=86.0

Q ss_pred             CCceEEEEE-Eec-cchH-HHHHHHHHHHHhhcC-ce-EEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCC--ccc
Q 018164          119 PIKLQVYVF-AKA-DDLK-SLLEPLEDIARNFKG-KI-MFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA--ISK  191 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~-~~~~~~~~la~~~~~-~i-~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~--~~~  191 (360)
                      +++.++.|| ..| +.|. .-.+.|.+++++|++ .+ .++.|..+.....+.+++.+++..+ | +  +.+...  ...
T Consensus        33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~-~-~--l~D~~~~~~~~  108 (241)
T 1nm3_A           33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENI-S-F--IPDGNGEFTEG  108 (241)
T ss_dssp             TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTS-E-E--EECTTSHHHHH
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCce-E-E--EECCCcHHHHH
Confidence            456777777 788 9999 889999999999874 37 7777776643212345556665433 2 2  233221  112


Q ss_pred             ccCCCCCCHHHH------HHHHHHHhcCccCCccccCCCCCCCCCceEEEcCccccccc---cc--cCccEEEEEeCCCC
Q 018164          192 FLLESDLTPSNI------EEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV---LN--SHKDVLLEVYTPWC  260 (360)
Q Consensus       192 y~~~~~~~~~~i------~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~~~~~~---~~--~~~~~~v~f~~~~c  260 (360)
                      |..........+      ..|+-  -+|++........... .  +   .+..+.++++   ..  .....+++|..+||
T Consensus       109 ~gv~~~~~~~g~~~~~~p~t~li--~~G~i~~~~~~~~~~~-~--~---~~~~~~~~il~~l~~~~i~~~~i~ly~~~~C  180 (241)
T 1nm3_A          109 MGMLVGKEDLGFGKRSWRYSMLV--KNGVVEKMFIEPNEPG-D--P---FKVSDADTMLKYLAPQHQVQESISIFTKPGC  180 (241)
T ss_dssp             TTCEEECTTTTCCEEECCEEEEE--ETTEEEEEEECCSCSS-C--C---CSSSSHHHHHHHHCTTSCCCCCEEEEECSSC
T ss_pred             hCceeecccccCcccceeEEEEE--ECCEEEEEEEeccCCC-c--c---ceecCHHHHHHHhhhhccccceEEEEECCCC
Confidence            211000000000      00111  1233222111100000 0  0   0001111111   00  12345778899999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC----C-CCCCCCCcEEEE
Q 018164          261 VTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH----P-KLQVEEYPTLLF  308 (360)
Q Consensus       261 ~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~-~~~i~~~Pti~~  308 (360)
                      ++|.+.+..+++.        ++.+-.+|++.+..    . ..+..++|++++
T Consensus       181 p~C~~a~~~L~~~--------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          181 PFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             HHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             hHHHHHHHHHHHc--------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence            9999998888765        34556678776522    2 247788999853

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.93  E-value=1.7e-05  Score=67.24  Aligned_cols=88  Identities=11%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---------------------------------  293 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------------------------------  293 (360)
                      +.+.+++.|+.+||++|+++.+.+.++.+.  +  ++.+..+.....                                 
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            356789999999999999999998887653  3  677776655210                                 


Q ss_pred             --------CC-----------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          294 --------EH-----------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       294 --------~~-----------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                              .+           ..++|+++||+++...++..  ....|..+.+.|.++|.+..+.+
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~--~~~~G~~~~~~L~~~l~~~~~~~  235 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL--QQAVGLPDQKTLNIIMGNKLQHH  235 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE--EEEESSCCHHHHHHHTTC-----
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE--EEecCCCCHHHHHHHHHHHHHhh
Confidence                    00           13389999999998642231  35789999999999998776543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.91  E-value=3.5e-05  Score=60.20  Aligned_cols=91  Identities=11%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--------------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~gi~~~  176 (360)
                      .+++.++.||++| +.|....+.+.+++++  +++.|+.|+.+...                    ....+++.||+...
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            3567889999999 9999999999999887  56888887753210                    01267888999988


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+.+ +++.++...+.+.|..+.+.+.++++..+.
T Consensus       119 -P~~~-~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          119 -PETF-VVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             -CEEE-EECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             -CeEE-EEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence             8774 444443444455788899999999988764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=97.90  E-value=5.2e-05  Score=59.40  Aligned_cols=94  Identities=10%  Similarity=0.071  Sum_probs=71.4

Q ss_pred             CCCceEEEEEEec-cchHHH-HHHHHHHHHhhcC-ceEEEEEeCCCc-------------------------ccch----
Q 018164          118 SPIKLQVYVFAKA-DDLKSL-LEPLEDIARNFKG-KIMFTAVDIADE-------------------------DLAK----  165 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~-~~~~~~la~~~~~-~i~f~~vd~~~~-------------------------~~~~----  165 (360)
                      .+++++|.||++| +.|... .+.+.+++++|++ .+.|+.|+++..                         ....    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            3567889999999 999995 9999999999984 588888875310                         0001    


Q ss_pred             -hHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          166 -PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       166 -~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                       .+++.||+... |+.+ +++.++...+.+.|..+.+.|.++|+..++.
T Consensus       107 ~~~~~~~~v~~~-P~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRGT-PSLL-LIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCSS-SEEE-EECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCCC-CEEE-EECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             47889999888 8884 5555444455557889999999999998864

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=97.89  E-value=6.7e-05  Score=61.14  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=70.2

Q ss_pred             ceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc--------------------------ccchhHHhhcC
Q 018164          121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE--------------------------DLAKPFLTLFG  172 (360)
Q Consensus       121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~--------------------------~~~~~l~~~~g  172 (360)
                      +++|.|+++| +.|....+.+.+++++|.++ +.|+.|+++..                          +....+++.||
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  127 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD  127 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence            4888999999 99999999999999999864 89999887420                          00136788999


Q ss_pred             CCCCCCceEEEEeCCCccccc---------CCCCCCHHHHHHHHHHHhcCc
Q 018164          173 LEESKNTVVTAFDNKAISKFL---------LESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~---------~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      +... |+.+ +++.++...+.         +.|..+.+.|.+.|+..+.++
T Consensus       128 v~~~-P~~~-lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~  176 (196)
T 2ywi_A          128 AACT-PDFY-IFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR  176 (196)
T ss_dssp             CCEE-SEEE-EEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred             CCCC-CeEE-EEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence            9888 8885 55444333333         456779999999999998764

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.89  E-value=6.1e-05  Score=58.43  Aligned_cols=109  Identities=15%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             CceEEEcCccccccccccCccEEEE-EeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC--CC-CC-CCCCCCC--
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLE-VYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS--AN-EH-PKLQVEE--  302 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~-f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~-~~-~~~~i~~--  302 (360)
                      +.|..++.+|...+. .+.-+..++ |....-..-..+++.++++|+.+++  ++.|+.+|.+  .+ .. ..++++.  
T Consensus        14 PLV~e~t~en~~~~~-~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg--ki~Fv~vd~~~~~~~~~l~~fGl~~~~   90 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIF-GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG--KILFAFIDSDHTDNQRILEFFGLKKEE   90 (147)
T ss_dssp             -CEEECCTTTHHHHH-SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT--TCEEEEECTTCGGGHHHHHHTTCCGGG
T ss_pred             CeeEEeccccHHHHh-cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC--ceEEEEEecchHhHHHHHHHcCCCccc
Confidence            468899999987764 555555444 5443333456688999999999998  8999999984  33 12 3567774  


Q ss_pred             CcEEEEEeC-CCccCceEec-CCCCHHHHHHHHHHhcCCCCC
Q 018164          303 YPTLLFYPA-GDKANPIKVS-ARSSSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       303 ~Pti~~~~~-g~~~~~~~~~-g~~~~~~l~~~i~~~~~~~~~  342 (360)
                      +|+++++.. +... .+.+. +..+.+.|.+|+++.+..+-+
T Consensus        91 ~P~v~i~~~~~~~~-Ky~~~~~~~t~~~i~~Fv~d~l~GkL~  131 (147)
T 3bj5_A           91 CPAVRLITLEEEMT-KYKPESEELTAERITEFCHRFLEGKIK  131 (147)
T ss_dssp             CSEEEEEECSSSCE-EECCSCCCCCHHHHHHHHHHHHTTCSC
T ss_pred             CCEEEEEecccccc-cCCCCcccCCHHHHHHHHHHHHcCCcc
Confidence            999999975 3222 13333 789999999999999876543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.88  E-value=4.5e-05  Score=60.20  Aligned_cols=87  Identities=10%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             CccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCCC-
Q 018164          248 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVEE-  302 (360)
Q Consensus       248 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~~-  302 (360)
                      .++++|.||+ +||+.|....+.+.++.+.+++. ++.+..|.++.. .+                      ..+++.. 
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            5689999998 99999999999999999999753 577777766521 11                      1234444 


Q ss_pred             -----------CcEEEEEeCCCccCceEecCC---CCHHHHHHHHHHh
Q 018164          303 -----------YPTLLFYPAGDKANPIKVSAR---SSSKNIAAFIKEQ  336 (360)
Q Consensus       303 -----------~Pti~~~~~g~~~~~~~~~g~---~~~~~l~~~i~~~  336 (360)
                                 .|+++++..++++ ...+.+.   ...+++.+.|++.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i-~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQV-VQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCE-EEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccccccCcceEEEEECCCCeE-EEEEcCCCcccCHHHHHHHHHHH
Confidence                       8999999655554 2234442   3456777777654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.85  E-value=0.00013  Score=60.52  Aligned_cols=43  Identities=16%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..+.++|.|||+||+.|. ..|.++++.+++++. ++.+.-+.++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            367999999999999999 789999999999753 5888888764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=97.83  E-value=4.2e-05  Score=60.66  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~  176 (360)
                      .+++.++.||++| ++|....+.+.+++++   .+.++.|+++..                    +....+++.||+...
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  126 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  126 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence            5677889999999 9999999999999887   477777763210                    011368889999988


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+.+ +.+.++...+.+.|..+.+.+.++++..+.
T Consensus       127 -P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          127 -PETF-LIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             -SEEE-EECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             -CEEE-EECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence             8774 444443444555788899999999888764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.83  E-value=3.7e-05  Score=61.61  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             cCccEEEEEeCCC-ChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..++++|.||++| |+.|....|.+.++.+.  .  ++.++.|+.+
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~--~v~vv~Is~D   84 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S--GATVLCVSKD   84 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T--TCEEEEEESS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c--CCEEEEEECC
Confidence            3679999999999 99999999999999988  2  5777777765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.81  E-value=1.9e-05  Score=58.18  Aligned_cols=86  Identities=10%  Similarity=-0.072  Sum_probs=62.6

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCc-----eEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCccccc
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-----IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFL  193 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-----i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~  193 (360)
                      ...+|+||++| ..|+.+.+   .++..+...     +.+..+|.+... ...++..++|.+. |+++++ ..+ ....+
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~---~i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~V~g~-PT~i~f-~~G-~ev~R   91 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDA---EIAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARPVTFT-PTFVLM-AGD-VESGR   91 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHH---HTTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSCCCSS-SEEEEE-ETT-EEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHH---HHHhhHHHhhhcccceEEEEECCCCC-chhHHHHCCCCCC-CEEEEE-ECC-EEEee
Confidence            45789999999 99999875   344555543     678888877542 1367788899988 998644 433 22334


Q ss_pred             CCCCCCHHHHHHHHHHHhc
Q 018164          194 LESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       194 ~~~~~~~~~i~~fi~~~~~  212 (360)
                      +.|....+.+..|++..+.
T Consensus        92 i~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           92 LEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             EECCCCHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHh
Confidence            5799999999999998764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=97.79  E-value=0.00018  Score=56.32  Aligned_cols=90  Identities=12%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc----------------ccchhHHhhcCCCCCCCc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE----------------DLAKPFLTLFGLEESKNT  179 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~----------------~~~~~l~~~~gi~~~~p~  179 (360)
                      .+++++|.||++| +.|....+.+.++++++. ..+.|+.++++..                +....+++.||+... |+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL-PD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS-SE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc-ce
Confidence            4567889999999 999999999999999998 4699999998761                001378899999998 98


Q ss_pred             eEEEEeCCCcccccCCCC--CCHHHHHHHHHH
Q 018164          180 VVTAFDNKAISKFLLESD--LTPSNIEEFCSR  209 (360)
Q Consensus       180 ~~~~~~~~~~~~y~~~~~--~~~~~i~~fi~~  209 (360)
                      ++ +++.++...+.+.|.  .+...+.+.+..
T Consensus       119 ~~-lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          119 TF-IVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             EE-EECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             EE-EEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence            74 554444444445554  445555555543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.76  E-value=0.00013  Score=58.98  Aligned_cols=96  Identities=19%  Similarity=0.310  Sum_probs=70.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------------ccchhHHhh
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------------DLAKPFLTL  170 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------------~~~~~l~~~  170 (360)
                      .+++++|.|+++| +.|....+.+.++++++.+++.|+.|+++..                          +....+.+.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            3467889999999 9999999999999999997788888887320                          001367889


Q ss_pred             cCCCCCCCceEEEEeCCCccccc--------CCCCCCHHHHHHHHHHHhcCcc
Q 018164          171 FGLEESKNTVVTAFDNKAISKFL--------LESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       171 ~gi~~~~p~~~~~~~~~~~~~y~--------~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                      ||+... |+.+ +++.++...+.        +.|..+.+.|.+.|+..+.++.
T Consensus       112 ~~v~~~-P~~~-lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          112 YRALRT-PEVF-LFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             TTCCEE-SEEE-EECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             cCCCCC-CeEE-EECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            999887 8875 44443333332        1233478899999999987653

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.72  E-value=0.00023  Score=59.24  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CCC----------
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EHP----------  296 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~~----------  296 (360)
                      ..++++|.|| +.||+.|....|.+.++.++++.. ++.++.|.++..                   ..+          
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENK-NVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            4678999999 999999999999999999998642 577777766431                   010          


Q ss_pred             -CCCC-----CCCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          297 -KLQV-----EEYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 -~~~i-----~~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                       .+++     ...|+++++..+.++. ..+.|    ..+.+++.+.|+...
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~-~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVR-HQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEE-EEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHHh
Confidence             1244     2579999996655542 23334    367889999888764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.70  E-value=4.4e-05  Score=60.82  Aligned_cols=88  Identities=8%  Similarity=0.046  Sum_probs=65.7

Q ss_pred             HHHhhccCCceeec--CcccccccccCCCceEEEEEEec-cchHHHHH-HH--HHHHHhhcCceEEEEEeCCCcccchhH
Q 018164           94 QFLNYNKFPLVTKL--TDINSASVHSSPIKLQVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPF  167 (360)
Q Consensus        94 ~fi~~~~~p~v~~l--~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l  167 (360)
                      -++..|....|...  +.+.+......+++++|.|+++| +.|+.+.+ .|  .++++.+++++.++.||.++.+   ++
T Consensus        12 pyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~---~l   88 (173)
T 3ira_A           12 PYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERP---DI   88 (173)
T ss_dssp             HHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCH---HH
T ss_pred             HHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccC---cH
Confidence            35555665555443  34566666677889999999999 99999988 33  5788888778999999999765   77


Q ss_pred             Hhhc--------CCCCCCCceEEEEeC
Q 018164          168 LTLF--------GLEESKNTVVTAFDN  186 (360)
Q Consensus       168 ~~~~--------gi~~~~p~~~~~~~~  186 (360)
                      .+.|        |+.+. |+.+ +++.
T Consensus        89 ~~~y~~~~q~~~gv~g~-Pt~v-~l~~  113 (173)
T 3ira_A           89 DNIYMTVCQIILGRGGW-PLNI-IMTP  113 (173)
T ss_dssp             HHHHHHHHHHHHSCCCS-SEEE-EECT
T ss_pred             HHHHHHHHHHHcCCCCC-ccee-eECC
Confidence            7777        89888 9885 5543

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.69  E-value=0.00051  Score=54.60  Aligned_cols=95  Identities=7%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             CccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCCCC---------------C--------------
Q 018164          248 HKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGL-DNLVIAKIDASANEH---------------P--------------  296 (360)
Q Consensus       248 ~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~---------------~--------------  296 (360)
                      .++++|.||++||+ .|....+.+.++.+.+... .++.+..|.++..+.               +              
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            68999999999997 6999999999999999632 257777776652110               0              


Q ss_pred             ----CCC---------CCCCcEEEEEeCCCccCceEecC-CCCHHHHHHHHHHhcCCCCCC
Q 018164          297 ----KLQ---------VEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQLKEKDQS  343 (360)
Q Consensus       297 ----~~~---------i~~~Pti~~~~~g~~~~~~~~~g-~~~~~~l~~~i~~~~~~~~~~  343 (360)
                          .++         +...|+++++....++ ...|.| ..+.++|.+.|.+.+......
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i-~~~~~g~~~~~~~i~~~l~~~~~~~~~~  167 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQI-KDYIYGVNYNYLEFVNALRLARGEGHHH  167 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBE-EEEEESSSCCHHHHHHHHHHHTTCSCTT
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeE-EEEEeCCCCCHHHHHHHHHHhhcccccc
Confidence                001         2345888888655554 224566 578999999999988765543

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.69  E-value=0.00037  Score=57.41  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..+.+||.||++||+.| ...|.+.++.+++++. ++.+.-|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            36799999999999999 6788999999999753 5888878654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=97.68  E-value=0.00021  Score=55.68  Aligned_cols=83  Identities=5%  Similarity=0.043  Sum_probs=61.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCccc-----------------ch---hHHhhcCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL-----------------AK---PFLTLFGLEE  175 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~-----------------~~---~l~~~~gi~~  175 (360)
                      .+++++|.||++| +.|....+.+.+++++|+++ +.++.|+++...-                 ..   .+.+.||+..
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            3567889999999 99999999999999999875 9999998875420                 00   1788899988


Q ss_pred             CCCceEEEEeCCCcccccCCCCCCHHH
Q 018164          176 SKNTVVTAFDNKAISKFLLESDLTPSN  202 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y~~~~~~~~~~  202 (360)
                      . |+.+ +++.++...+.+.|..+.+.
T Consensus       114 ~-P~~~-lid~~G~i~~~~~g~~~~e~  138 (152)
T 2lrt_A          114 L-PSVF-LVNRNNELSARGENIKDLDE  138 (152)
T ss_dssp             C-SEEE-EEETTTEEEEETTTCSCHHH
T ss_pred             C-ceEE-EECCCCeEEEecCCHHHHHH
Confidence            7 8884 55544444555566655544

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.00043  Score=53.58  Aligned_cols=90  Identities=11%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             CCCceEEEEEEec-cc--hHHHHHHHHHHHHhh-cCc-eEEEEEeCCCccc----------------------chhHHhh
Q 018164          118 SPIKLQVYVFAKA-DD--LKSLLEPLEDIARNF-KGK-IMFTAVDIADEDL----------------------AKPFLTL  170 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~--~~~~~~~~~~la~~~-~~~-i~f~~vd~~~~~~----------------------~~~l~~~  170 (360)
                      .+++++|.||++| +.  |....+.+.+++++| +++ +.|+.|+.+....                      ...+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3567889999999 99  999999999999999 654 8888888774310                      1267889


Q ss_pred             cCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          171 FGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       171 ~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ||+... |+.+ +++.++...+.+   .+.+.+.+.++..+.
T Consensus       112 ~~v~~~-P~~~-lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          112 YSIYKI-PANI-LLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             TTCCSS-SEEE-EECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             cCCCcc-CeEE-EECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            999988 8884 554443333332   388889888888763

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.66  E-value=6.2e-05  Score=53.12  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=54.4

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-C---C--CCCCCCcEEEEEeCCCccCceEecCC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-P---K--LQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~---~--~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      .++.|.++||++|...+..|.+.        ++.+-.+|++.+ +. .   +  -+..++|+|++ .+|..      -+.
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~------l~~   69 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGST------LTN   69 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCE------EES
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEE------EeC
Confidence            46789999999999988777663        577888999887 32 1   1  15778999865 44432      124


Q ss_pred             CCHHHHHHHHHHhcCCC
Q 018164          324 SSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~~~  340 (360)
                      .+.++|.++|.+..+..
T Consensus        70 ~~~~el~~~L~el~gL~   86 (92)
T 2lqo_A           70 PSADEVKAKLVKIAGLE   86 (92)
T ss_dssp             CCHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHhcCCc
Confidence            57889999999987753

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=97.65  E-value=0.00011  Score=53.36  Aligned_cols=76  Identities=9%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCC
Q 018164          121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLT  199 (360)
Q Consensus       121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~  199 (360)
                      +.+++|+++| +.|+.+.+.+++++.++.  +.|..+|.+..+   .+...||+. . |+++ ++.++.  .. ..|.++
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~---~l~~~ygv~-V-P~l~-~~~dG~--~v-~~g~~~   98 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNE---HLTRLYNDR-V-PVLF-AVNEDK--EL-CHYFLD   98 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCH---HHHHHSTTS-C-SEEE-ETTTTE--EE-ECSSCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCH---HHHHHhCCC-C-ceEE-EEECCE--EE-EecCCC
Confidence            5578888999 999999999999999884  889999998765   888899986 5 8874 333322  11 247788


Q ss_pred             HHHHHHHH
Q 018164          200 PSNIEEFC  207 (360)
Q Consensus       200 ~~~i~~fi  207 (360)
                      .+.|.+|+
T Consensus        99 ~~~L~~~L  106 (107)
T 2fgx_A           99 SDVIGAYL  106 (107)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHh
Confidence            89998887

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=97.63  E-value=0.0004  Score=54.02  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC-Ccccc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK-AISKF  192 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~-~~~~y  192 (360)
                      .+++++|.|+.+| ..|+.+....   .++++.++..+.++.+|.+..+ +..+++.|++.++ |+++ +++.. +....
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~-~~~l~~~y~v~~~-P~~~-fld~~~G~~l~  117 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF-PYVS-ILDPRTGQKLV  117 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS-SEEE-EECTTTCCCCE
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHh-HHHHHHHcCCCCC-CEEE-EEeCCCCcEee
Confidence            4678889999999 9999987654   5677766667899999987543 4578899999987 8874 55554 22222


Q ss_pred             cCCCCCCHHHHHHHHHHHhcC
Q 018164          193 LLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       193 ~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      .+.| .+.+.+.++++.++..
T Consensus       118 ~~~g-~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          118 EWHQ-LDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             EESS-CCHHHHHHHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHHHHHHHh
Confidence            2345 8999999999998753

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.63  E-value=0.00046  Score=55.56  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCc--ccchhHHhhcCCC-------------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE--DLAKPFLTLFGLE-------------------  174 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~--~~~~~l~~~~gi~-------------------  174 (360)
                      .++++++.|+.+| +.|....+.+.+++++++ ..+.++.|+.+..  ...+.+++.+++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            3567888999999 999999999999999998 4588888887743  1123567777774                   


Q ss_pred             ----CCCCceEEEEeCCCcccccCCCCC--CHHHHHHHHHHHhcC
Q 018164          175 ----ESKNTVVTAFDNKAISKFLLESDL--TPSNIEEFCSRLLHG  213 (360)
Q Consensus       175 ----~~~p~~~~~~~~~~~~~y~~~~~~--~~~~i~~fi~~~~~g  213 (360)
                          .. |+.+ +.+.++...+.+.|..  +.+.+.++|+..+.+
T Consensus       139 ~~~~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          139 GRALGM-PTSV-LVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TCCSSS-SEEE-EECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             cccCCC-CEEE-EECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                44 7774 5554444444455654  478999999998865

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=97.62  E-value=0.00035  Score=55.91  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=66.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~  176 (360)
                      .+++++|.||++| +.|....+.+.+++++   .+.++.|+.+..                    +....+++.||+...
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            3567889999999 9999999999999987   377777764210                    001367888999888


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+.+ +++.++...+.+.|..+.+.+.+++...+.
T Consensus       134 -P~~~-lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          134 -PETY-LIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             -CEEE-EECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             -CeEE-EECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence             8774 555544455566788899999999988875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.61  E-value=0.00022  Score=54.55  Aligned_cols=89  Identities=6%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHH---HHHhhcC-ceEEEEEeCCCccc-ch------------------hH--Hhhc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLED---IARNFKG-KIMFTAVDIADEDL-AK------------------PF--LTLF  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~---la~~~~~-~i~f~~vd~~~~~~-~~------------------~l--~~~~  171 (360)
                      .+++.++.||++| +.|....+.+.+   +.+++++ .+.++.|+.+.... .+                  .+  .+.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            4567889999999 999999999888   8888874 38898888774320 00                  11  2378


Q ss_pred             CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       172 gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      |+... |+.+ +++.++...+   +..+.+.|.+++++..
T Consensus       106 ~v~~~-P~~~-lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRAT-PTIY-LLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSS-SEEE-EECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             CCCCC-CeEE-EECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            88888 8884 5544333333   5688999999998754

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00021  Score=63.79  Aligned_cols=93  Identities=9%  Similarity=0.017  Sum_probs=72.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc------------------------cchhHHhhc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------------LAKPFLTLF  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~  171 (360)
                      .+++++|.||++| ..|....+.|.+++++|++ .+.|+.|+++.+.                        ....+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            3567889999999 9999999999999999986 4999999875310                        012678899


Q ss_pred             CCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          172 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       172 gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++... |+.+ +++.++...+.+.|..+.+.|.++|++.+.
T Consensus       161 gV~~~-Pt~~-lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          161 RNRYW-PAEY-LIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TCCEE-SEEE-EECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             CCCcc-CEEE-EEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            99888 8885 555444445555788899999999999874

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.57  E-value=2.9e-05  Score=56.41  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--------CC-CCCCCCCcEEEEEeCCCc
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      .+++|+++||++|+.+.+.+++++..+.   +  +..+|++.+.        +. .+++.++|+++  .+|..
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~--~~g~~   78 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG---L--LEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKEC   78 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT---S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC---c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE--ECCEE
Confidence            4677999999999999999988754332   2  4455665541        22 34889999983  35543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.57  E-value=0.00027  Score=55.42  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=32.7

Q ss_pred             cEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          250 DVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       250 ~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .++|+|| +.||+.|....|.+.++.+.+++. . .+..|.++
T Consensus        37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~-~vv~is~d   77 (159)
T 2a4v_A           37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEY-A-AVFGLSAD   77 (159)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-C-EEEEEESC
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhC-C-cEEEEeCC
Confidence            6888887 999999999999999999999764 3 55556554

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.56  E-value=0.00015  Score=52.51  Aligned_cols=71  Identities=17%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------CCC----C-CCCCCCcEEEEEeCCCccC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------EHP----K-LQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~~~----~-~~i~~~Pti~~~~~g~~~~  316 (360)
                      ++..+++|+++||++|+.+++.+++++        +.+-.+|++..      +..    . .+..++|++++  +|.   
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~--------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---   86 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLG--------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---   86 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHT--------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcC--------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---
Confidence            445677899999999999999988762        33445565542      111    1 37889999876  331   


Q ss_pred             ceEecCCCCHHHHHHHH
Q 018164          317 PIKVSARSSSKNIAAFI  333 (360)
Q Consensus       317 ~~~~~g~~~~~~l~~~i  333 (360)
                        .+-|..+.+.|.++|
T Consensus        87 --~~igg~~~~~l~~~L  101 (103)
T 3nzn_A           87 --KAIVGFKEKEIRESL  101 (103)
T ss_dssp             --EEEESCCHHHHHHHT
T ss_pred             --EEEEcCCHHHHHHHh
Confidence              234667888887765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=97.56  E-value=7e-05  Score=52.30  Aligned_cols=74  Identities=12%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS  201 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~  201 (360)
                      +++|+++| +.|+.+.+.+.+++.++     +..+|.+..+   .+...||++ . |+++ +. ++  ...  .|.++.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~---~l~~~~g~~-v-Ptl~-~~-~G--~~v--~g~~~~~   66 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDA---ALESAYGLR-V-PVLR-DP-MG--REL--DWPFDAP   66 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCH---HHHHHHTTT-C-SEEE-CT-TC--CEE--ESCCCHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCH---HHHHHhCCC-c-CeEE-EE-CC--EEE--eCCCCHH
Confidence            57889999 99999999999887654     5789988775   888999997 6 8874 32 22  222  2778999


Q ss_pred             HHHHHHHHHhc
Q 018164          202 NIEEFCSRLLH  212 (360)
Q Consensus       202 ~i~~fi~~~~~  212 (360)
                      .|.+|++..+.
T Consensus        67 ~L~~~l~~~~~   77 (87)
T 1ttz_A           67 RLRAWLDAAPH   77 (87)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.56  E-value=5.3e-05  Score=60.14  Aligned_cols=75  Identities=12%  Similarity=-0.027  Sum_probs=55.8

Q ss_pred             cCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcC---CCCCCCceE
Q 018164          107 LTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFG---LEESKNTVV  181 (360)
Q Consensus       107 l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~g---i~~~~p~~~  181 (360)
                      ++++.+..+-. .+.+.++.|+++| ++|....|.+.+++.++. ++.|+.+|.+..+   .++..|+   +.+. |+++
T Consensus        41 ~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~---~~~~~~~~~~v~~i-Pt~i  115 (167)
T 1z6n_A           41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAE---DDLRQRLALERIAI-PLVL  115 (167)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHH---HHTTTTTTCSSCCS-SEEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCH---HHHHHHHHcCCCCc-CeEE
Confidence            34444443322 3456788899999 999999999999999886 5999999987654   7777776   8887 9985


Q ss_pred             EEEeCC
Q 018164          182 TAFDNK  187 (360)
Q Consensus       182 ~~~~~~  187 (360)
                       +++.+
T Consensus       116 -~~~~~  120 (167)
T 1z6n_A          116 -VLDEE  120 (167)
T ss_dssp             -EECTT
T ss_pred             -EECCC
Confidence             44443

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.53  E-value=6.3e-05  Score=64.97  Aligned_cols=73  Identities=8%  Similarity=-0.119  Sum_probs=55.5

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc---cchhHHhhcCCCCCCCceEEEEeCCCcccccCCCC
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED---LAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD  197 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~---~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~  197 (360)
                      .+++||++| ++|+++.+.|+++|++++      .+||+..+   -++++++.+||+++ |+++ + +   +++  +.|.
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~v-PT~~-i-~---G~~--~~G~  265 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSY-PTWI-I-N---GRT--YTGV  265 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCST-TEEE-E-T---TEE--EESC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCccc-CeEE-E-C---CEE--ecCC
Confidence            468999999 999999999999997763      44554110   02489999999999 9963 3 2   234  4789


Q ss_pred             CCHHHHHHHHH
Q 018164          198 LTPSNIEEFCS  208 (360)
Q Consensus       198 ~~~~~i~~fi~  208 (360)
                      .+.+.|.+|+.
T Consensus       266 ~~~~~L~~~l~  276 (291)
T 3kp9_A          266 RSLEALAVASG  276 (291)
T ss_dssp             CCHHHHHHHTC
T ss_pred             CCHHHHHHHHC
Confidence            99999999874

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.53  E-value=0.00015  Score=59.06  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=39.0

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +.+++++.|+++||++|..+.|.+.++.+.+.+  ++.|..+++.
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            467899999999999999999999999999876  7999999986

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.52  E-value=0.0005  Score=56.82  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=62.9

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CCC-----------
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EHP-----------  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~~-----------  296 (360)
                      .++++|.|| +.||+.|....|.+.++.+.++.. ++.+..|.++..                   ..+           
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~-~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            578999999 999999999999999999999753 677777765431                   010           


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      .+++.      ..|+++++..+.++. ..+.|    .++.+++.+.|....
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~-~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILR-QITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEE-EEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHhh
Confidence            12342      489999996655542 23333    257788999888754

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.50  E-value=3.6e-05  Score=56.97  Aligned_cols=59  Identities=12%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--------CC-CCCCCCCcEEEEEeCCCc
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      ...++.|+++||++|+.+.+.+++++... +  +  +..+|++.+.        +. .+++.++|++++  +|+.
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~--~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~   85 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFSFKR-G--A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTS   85 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSCBCT-T--S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEE
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcCCCc-C--c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence            34578899999999999998887653221 1  2  6677877653        22 358899998743  5533

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.001  Score=55.21  Aligned_cols=93  Identities=16%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             ceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc--------------------------ccchhHHhhcC
Q 018164          121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE--------------------------DLAKPFLTLFG  172 (360)
Q Consensus       121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~--------------------------~~~~~l~~~~g  172 (360)
                      +++|.|+++| +.|....+.|.+++++|+++ +.|+.|+++..                          +....+.+.||
T Consensus        61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~  140 (218)
T 3u5r_E           61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYG  140 (218)
T ss_dssp             EEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHT
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcC
Confidence            4788899999 99999999999999999875 99999888411                          00137889999


Q ss_pred             CCCCCCceEEEEeCCCccccc---------CCCCCCHHHHHHHHHHHhcCcc
Q 018164          173 LEESKNTVVTAFDNKAISKFL---------LESDLTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~---------~~~~~~~~~i~~fi~~~~~g~~  215 (360)
                      +... |+.+ +++.++...|.         ..+..+.+.|.+.|+..++|+.
T Consensus       141 v~~~-P~~~-liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          141 AACT-PDFF-LYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             CCEE-SEEE-EECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCC-CeEE-EECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            9988 8885 45444333332         1234578999999999998753

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=7.1e-05  Score=56.77  Aligned_cols=73  Identities=7%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----C----CC-CCCCCCCcEEEEEeCCCccCceEe--
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----E----HP-KLQVEEYPTLLFYPAGDKANPIKV--  320 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----~----~~-~~~i~~~Pti~~~~~g~~~~~~~~--  320 (360)
                      +++|+++||++|+.+.+.+.+++        +.+..+|++.+    +    +. .+++.++|+++  .+|..+  ..+  
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G~~i--gg~~~   96 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTFI--GGATD   96 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETTEEE--EEHHH
T ss_pred             EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECCEEE--cChHH
Confidence            45599999999999999998873        34556677654    1    22 34889999984  355432  111  


Q ss_pred             -cCCCCHHHHHHHHHHh
Q 018164          321 -SARSSSKNIAAFIKEQ  336 (360)
Q Consensus       321 -~g~~~~~~l~~~i~~~  336 (360)
                       .+......|.++|++.
T Consensus        97 l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           97 THRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             HHHHHHHTSSHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHc
Confidence             1123344566777664

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.44  E-value=9.4e-05  Score=53.10  Aligned_cols=58  Identities=7%  Similarity=0.119  Sum_probs=42.3

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CC-----CCCCCcEEEEEeCCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KL-----QVEEYPTLLFYPAGD  313 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~-----~i~~~Pti~~~~~g~  313 (360)
                      +.....+++|+++||++|+.+...|+++        ++.+..+|++.+ +.. .+     +..++|++  |-+|.
T Consensus        12 ~~~~~~v~vy~~~~Cp~C~~ak~~L~~~--------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~   76 (99)
T 3qmx_A           12 SAVSAKIEIYTWSTCPFCMRALALLKRK--------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQ   76 (99)
T ss_dssp             SCCCCCEEEEECTTCHHHHHHHHHHHHH--------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTE
T ss_pred             ccCCCCEEEEEcCCChhHHHHHHHHHHC--------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCE
Confidence            3455667789999999999999999887        355677888776 332 22     77889988  34553

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.44  E-value=8.1e-05  Score=52.54  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-CCCCCCCCcEEEEEeCCCccCceEe
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-PKLQVEEYPTLLFYPAGDKANPIKV  320 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-~~~~i~~~Pti~~~~~g~~~~~~~~  320 (360)
                      +++|+++||++|+.+...+++++        +.+-.+|++..          ++ ...++.++|++++  +| .    ..
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g--------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g-~----~i   78 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG--------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GD-K----HV   78 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TT-E----EE
T ss_pred             EEEEECCCChHHHHHHHHHHHcC--------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CC-E----EE
Confidence            66789999999999998888763        23344555521          11 1237789999987  44 2    22


Q ss_pred             cCCCCHHHHHHHHH
Q 018164          321 SARSSSKNIAAFIK  334 (360)
Q Consensus       321 ~g~~~~~~l~~~i~  334 (360)
                      .| .+.+.|.++|+
T Consensus        79 ~G-~~~~~l~~~l~   91 (92)
T 3ic4_A           79 LG-YNEEKLKELIR   91 (92)
T ss_dssp             ES-CCHHHHHHHHH
T ss_pred             eC-CCHHHHHHHhc
Confidence            34 58899998875

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=97.44  E-value=0.00048  Score=54.46  Aligned_cols=67  Identities=10%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCccc---------------------chhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDL---------------------AKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~---------------------~~~l~~~~gi  173 (360)
                      .+++++|.|+++| +.|....+.+.+++++|++  .+.++.|+++....                     ...+++.||+
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            4567889999999 9999999999999999985  68888888765410                     0378899999


Q ss_pred             CCCCCceEEEEeC
Q 018164          174 EESKNTVVTAFDN  186 (360)
Q Consensus       174 ~~~~p~~~~~~~~  186 (360)
                      ... |+++ +++.
T Consensus       127 ~~~-Pt~~-lid~  137 (165)
T 3s9f_A          127 ESI-PTLI-GLNA  137 (165)
T ss_dssp             CSS-SEEE-EEET
T ss_pred             CCC-CEEE-EEeC
Confidence            988 9985 4443

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.43  E-value=0.00048  Score=55.03  Aligned_cols=90  Identities=9%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCC----------------C----CCCCCCC
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANE----------------H----PKLQVEE  302 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~----------------~----~~~~i~~  302 (360)
                      ...|.++|+++++||..|..+....   +++.+.++.  ++.+..+|++..+                +    ..+++++
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~  130 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQ  130 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTT
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCC
Confidence            3578999999999999999986443   457777766  7889999988764                1    1268999


Q ss_pred             CcEEEEEeC-CCccC-ceEecCCCCHHHHHHHHHHhc
Q 018164          303 YPTLLFYPA-GDKAN-PIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       303 ~Pti~~~~~-g~~~~-~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ||++.++.. |.... .-+..|..+++++.+.|.+.+
T Consensus       131 ~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          131 FPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             CSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            999999843 22211 235789999999998887654

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.42  E-value=0.00067  Score=52.02  Aligned_cols=66  Identities=12%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcc---------------------cchhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADED---------------------LAKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~gi  173 (360)
                      .+++++|.|+++| +.|....+.+.+++++++  ..+.++.|+++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            4567889999999 999999999999999998  46888888877521                     02468899999


Q ss_pred             CCCCCceEEEEe
Q 018164          174 EESKNTVVTAFD  185 (360)
Q Consensus       174 ~~~~p~~~~~~~  185 (360)
                      ... |+++ +++
T Consensus       107 ~~~-P~~~-lid  116 (144)
T 1i5g_A          107 KSI-PTLV-GVE  116 (144)
T ss_dssp             CSS-SEEE-EEE
T ss_pred             CCC-CEEE-EEE
Confidence            988 9885 554

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.40  E-value=0.00023  Score=60.23  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             Cc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------C----------C-CC
Q 018164          248 HK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------E----------H-PK  297 (360)
Q Consensus       248 ~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------~----------~-~~  297 (360)
                      ++ .+|+.|+++||+.|....+.+.+++..|+.. ++.++.+.++..                  .          + ..
T Consensus        33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~-gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            44 4566789999999999999999999999753 688888887541                  0          0 01


Q ss_pred             CCCC-------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          298 LQVE-------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       298 ~~i~-------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      +++.       .+|+++++..++++. ..+.|    .++.++|.+.|+...
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~-~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIR-TMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEE-EEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCCeEE-EEEecCCcccchhHHHHHHHHHHH
Confidence            2454       899999996555542 22223    268899999888654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.40  E-value=0.00026  Score=57.66  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      +.+.++|.|+++||++|..+.|.+.++.+.+.+  ++.|..+++..+
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~~~   67 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVVWQ   67 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECCCS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCCCC
Confidence            357899999999999999999999999988876  799999987643

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.39  E-value=0.00042  Score=56.36  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      +.+.+++.|+.+||++|..+.+.+.++.+.+..  ++.+..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEecc
Confidence            356789999999999999999999999998865  677777765

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=97.38  E-value=0.00028  Score=54.81  Aligned_cols=89  Identities=8%  Similarity=-0.002  Sum_probs=54.6

Q ss_pred             ccCCCceEEEEEEec-cchHHHHHHHHHH---HHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCccc
Q 018164          116 HSSPIKLQVYVFAKA-DDLKSLLEPLEDI---ARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISK  191 (360)
Q Consensus       116 ~~~~~~~~v~f~~~~-~~~~~~~~~~~~l---a~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~  191 (360)
                      ...+++++|.|+++| +.|+.+.+.+.+.   ....+..+..+.+|.+ ..   .+...+++.+. |+++ +++.++...
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~---~~~~~~~v~~~-PT~~-f~~~~G~~v  114 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TT---DKNLSPDGQYV-PRIM-FVDPSLTVR  114 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CS---CGGGCTTCCCS-SEEE-EECTTSCBC
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-ch---hhHhhcCCCCC-CEEE-EECCCCCEE
Confidence            345778999999999 9999999988753   2222223444555422 22   55678899888 9985 555333334


Q ss_pred             ccCCCC-------CCHHHHHHHHHHH
Q 018164          192 FLLESD-------LTPSNIEEFCSRL  210 (360)
Q Consensus       192 y~~~~~-------~~~~~i~~fi~~~  210 (360)
                      ....|.       ...+++.++++..
T Consensus       115 ~~~~G~~~~~~~~~~~~~~~~ll~~~  140 (151)
T 3ph9_A          115 ADIAGRYSNRLYTYEPRDLPLLIENM  140 (151)
T ss_dssp             TTCCCSCTTSTTCCCGGGHHHHHHHH
T ss_pred             EEEeCCcCCcccccchhhHHHHHHHH
Confidence            444554       4444444444443

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.36  E-value=0.00084  Score=54.18  Aligned_cols=89  Identities=6%  Similarity=0.019  Sum_probs=62.1

Q ss_pred             CccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--------------C--C-----------CCC
Q 018164          248 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------H--P-----------KLQ  299 (360)
Q Consensus       248 ~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------~--~-----------~~~  299 (360)
                      .++++|.||+ .||+.|....|.+.++.++++.. ++.+..|..+..+              +  +           .++
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            5789999995 99999999999999999998642 5777777654310              1  0           123


Q ss_pred             CC------CCcEEEEEeCCCccCceEecCC----CCHHHHHHHHHHhcC
Q 018164          300 VE------EYPTLLFYPAGDKANPIKVSAR----SSSKNIAAFIKEQLK  338 (360)
Q Consensus       300 i~------~~Pti~~~~~g~~~~~~~~~g~----~~~~~l~~~i~~~~~  338 (360)
                      +.      ..|+.+++....++ ...+.|.    ++.+++.+.|+....
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i-~~~~~~~~~~~~~~~~l~~~l~~l~~  156 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBE-EEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            33      26999999765554 2334443    368889988887653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.35  E-value=0.00092  Score=51.40  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcc---------------------cchhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADED---------------------LAKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~gi  173 (360)
                      .+++++|.|+++| +.|....+.+.+++++++  +.+.++.|+++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            3567889999999 999999999999999998  46888888877421                     12468899999


Q ss_pred             CCCCCceEEEEe
Q 018164          174 EESKNTVVTAFD  185 (360)
Q Consensus       174 ~~~~p~~~~~~~  185 (360)
                      ... |+++ +++
T Consensus       107 ~~~-Pt~~-lid  116 (146)
T 1o8x_A          107 ESI-PTLI-GVD  116 (146)
T ss_dssp             CSS-SEEE-EEE
T ss_pred             CCC-CEEE-EEE
Confidence            988 9885 554

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.34  E-value=0.00045  Score=52.91  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHH---HHHhhcC-ceEEEEEeCCCcccc---------------------hhHHhhcC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLED---IARNFKG-KIMFTAVDIADEDLA---------------------KPFLTLFG  172 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~---la~~~~~-~i~f~~vd~~~~~~~---------------------~~l~~~~g  172 (360)
                      +++.++.||++| ++|....+.+.+   +.+++++ .+.++.|+.+...-.                     ..+.+.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            467888999999 999999999999   9999964 588888887754200                     01467788


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHH
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS  208 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~  208 (360)
                      +... |+.+ +.+.++...+.   ..+.+.|.+|++
T Consensus       111 v~~~-P~~~-lid~~G~i~~~---~~~~~~l~~~l~  141 (142)
T 3eur_A          111 LRAI-PTLY-LLDKNKTVLLK---DATLQKVEQYLA  141 (142)
T ss_dssp             CTTC-SEEE-EECTTCBEEEE---EECHHHHHHHHH
T ss_pred             CCcC-CeEE-EECCCCcEEec---CCCHHHHHHHHh
Confidence            8887 8884 45443322332   246788888875

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.33  E-value=0.00067  Score=51.95  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhc--CceEEEEEeCCCcc---------------------cchhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADED---------------------LAKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~--~~i~f~~vd~~~~~---------------------~~~~l~~~~gi  173 (360)
                      .+++.+|.|+++| +.|....+.+.+++++++  ..+.++.|+++...                     ....+++.||+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            3567889999999 999999999999999998  46888888877521                     02368899999


Q ss_pred             CCCCCceEEEEe
Q 018164          174 EESKNTVVTAFD  185 (360)
Q Consensus       174 ~~~~p~~~~~~~  185 (360)
                      ... |+++ +++
T Consensus       107 ~~~-Pt~~-lid  116 (144)
T 1o73_A          107 ESI-PTLI-TIN  116 (144)
T ss_dssp             CSS-SEEE-EEE
T ss_pred             CCC-CEEE-EEE
Confidence            988 9985 555

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.32  E-value=9.7e-05  Score=57.17  Aligned_cols=53  Identities=9%  Similarity=0.150  Sum_probs=36.8

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----C----CC-CCCCCCCcEEEEEeCCCc
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----E----HP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----~----~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      ++.|+++||++|+.+.+.+++++        +.+..+|++.+    .    +. .+++.++|+++  .+|..
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G~~  112 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTF  112 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETTEE
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECCEE
Confidence            45599999999999999998873        33445666544    1    22 34889999984  35543

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.29  E-value=0.0016  Score=54.90  Aligned_cols=88  Identities=11%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             cCccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C------------------CC----------
Q 018164          247 SHKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E------------------HP----------  296 (360)
Q Consensus       247 ~~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~------------------~~----------  296 (360)
                      ..+.++|.||+ .||+.|....+.+.++.+.+++. ++.+..|.++.. .                  .+          
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            35789999999 99999999999999999999753 577777776532 1                  10          


Q ss_pred             -CCCCC------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHh
Q 018164          297 -KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 -~~~i~------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~  336 (360)
                       .+++.      .+|+++++....++. ..+.+    .++.+++.+.|...
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~-~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLR-QITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEE-EEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence             12443      479999996655542 22222    46678888888754

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.27  E-value=0.00081  Score=52.74  Aligned_cols=93  Identities=10%  Similarity=0.012  Sum_probs=67.4

Q ss_pred             CCCceEEEEEEec-cc-hHHHHHHHHHHHHhhcC-----ceEEEEEeCCCcc-------------------------cch
Q 018164          118 SPIKLQVYVFAKA-DD-LKSLLEPLEDIARNFKG-----KIMFTAVDIADED-------------------------LAK  165 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~-~~~~~~~~~~la~~~~~-----~i~f~~vd~~~~~-------------------------~~~  165 (360)
                      .+++++|.|+..| ++ |....+.+.++.++++.     .+.++.|..+...                         ...
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3567888899999 87 99999999999999963     6888888765310                         011


Q ss_pred             hHHhhcCCCCCCC---------------ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          166 PFLTLFGLEESKN---------------TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       166 ~l~~~~gi~~~~p---------------~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      .+.+.||+... |               +. .+.+.++...+.+.|..+.+.|.+.|...+.
T Consensus       102 ~~~~~~~v~~~-p~~~~~~~~~~~~~~~~~-~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYS-PGPKDEDEDYIVDHTIIM-YLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEE-EEEECTTSCEEEEECCEE-EEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEE-ecCCCCCCCeeEeccceE-EEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            36778888765 5               44 4555544445555777899999999988764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0015  Score=51.80  Aligned_cols=92  Identities=15%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCC--------cccchhHH-h-----------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFL-T-----------------  169 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~-~-----------------  169 (360)
                      .+++++|.|+++| +.|. ..+.+.+++++++++ +.++.|+++.        ....+.++ +                 
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            4567889999999 9999 999999999999865 8888886521        00001222 1                 


Q ss_pred             ------------hcCCCCCCC------ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          170 ------------LFGLEESKN------TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       170 ------------~~gi~~~~p------~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                                  .+|+.+. |      +.+ +++.++...+.+.|..+.+.|.+.|+..+.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~-P~i~~~~~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGL-RGIKWNFEKF-LVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSC-CSCCSTTCEE-EECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCC-CcccccceEE-EECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        2466666 6      553 555444445555788889999999998874

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.21  E-value=0.00028  Score=48.35  Aligned_cols=65  Identities=8%  Similarity=0.152  Sum_probs=44.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----C-CCCCCCCcEEEEEeCCCccCceEecCCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----P-KLQVEEYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                      +++|+++||++|..+.+.+++.        ++.+..+|++.+ ..    . ..++.++|+++  .+|..     ..|   
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~-----i~g---   64 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQH-----IGG---   64 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEE-----EES---
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE-----EeC---
Confidence            6779999999999999888875        245667787765 22    1 24788999984  35532     223   


Q ss_pred             HHHHHHHHH
Q 018164          326 SKNIAAFIK  334 (360)
Q Consensus       326 ~~~l~~~i~  334 (360)
                      ...|.+++.
T Consensus        65 ~~~i~~~~~   73 (82)
T 1fov_A           65 YDDLYALDA   73 (82)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            356666654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.19  E-value=0.0013  Score=51.95  Aligned_cols=92  Identities=10%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             CCceEEEEEEec-cc-hHHHHHHHHHHHHhhc-----CceEEEEEeCCCcc-------------------------cchh
Q 018164          119 PIKLQVYVFAKA-DD-LKSLLEPLEDIARNFK-----GKIMFTAVDIADED-------------------------LAKP  166 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~-~~~~~~~~~~la~~~~-----~~i~f~~vd~~~~~-------------------------~~~~  166 (360)
                      +++++|.|+..| ++ |....+.+.++.++++     ..+.++.|..+...                         ....
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ  105 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            567788899999 87 9999999999999995     36888888776210                         0014


Q ss_pred             HHhhcCCCCCCC---------------ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          167 FLTLFGLEESKN---------------TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       167 l~~~~gi~~~~p---------------~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++.||+... |               +. .+.+.++...+.+.|..+.+.|.+.|...+.
T Consensus       106 ~~~~~~v~~~-p~~~~~~~~~~~~~~~~~-~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          106 ASHSYRVYYN-AGPKDEDQDYIVDHSIAI-YLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHSCCCCE-ECCCCSSCCCCEECCCEE-EEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCeEEE-ecCCCCCCCeEEeccceE-EEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            6778898755 5               44 4555544444555778899999999998775

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.19  E-value=0.00013  Score=51.06  Aligned_cols=53  Identities=19%  Similarity=0.362  Sum_probs=38.6

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC--CC-CCC-CC-CCCCCcEEEEEeCCC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS--AN-EHP-KL-QVEEYPTLLFYPAGD  313 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~--~~-~~~-~~-~i~~~Pti~~~~~g~  313 (360)
                      .++.|+++||++|+.+.+.+++.        ++.+..+|++  .. ++. .+ ++.++|++++  +|.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~--------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~   64 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK--------GVKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDY   64 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH--------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence            47789999999999999988876        2456777877  22 232 35 7889999843  553

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.19  E-value=0.0022  Score=51.83  Aligned_cols=94  Identities=20%  Similarity=0.242  Sum_probs=65.7

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCC--------cccchhHH-hhc---------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFL-TLF---------------  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~-~~~---------------  171 (360)
                      .+++++|.|+++| +.|....+.+.++.++|+++ +.++.|+++.        ....+.++ +.+               
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4567889999999 99999999999999999865 8898888762        11011223 222               


Q ss_pred             --------------CCCCCCC------ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          172 --------------GLEESKN------TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       172 --------------gi~~~~p------~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                                    |+.+. |      +.+ +++.++...+.+.|..+.+.|.+.|...++.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~-P~i~~~~~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKT-KAIKWNFTSF-LIDRDGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGC-CSCCSTTCEE-EECTTSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCcCCC-ccccccceEE-EECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                          44444 5      553 4544444455567888999999999998753

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.14  E-value=0.0023  Score=49.42  Aligned_cols=81  Identities=20%  Similarity=0.329  Sum_probs=58.4

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC---------------------------------
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------------------------------  292 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------------------------------  292 (360)
                      .+.+.+++.|..++|++|+++.+.++++     +  ++.+...+...                                 
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~   84 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF   84 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            4567889999999999999999887654     2  45555443221                                 


Q ss_pred             ----CCC-----------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          293 ----NEH-----------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       293 ----~~~-----------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                          ..+           ..++|+++||+++ .+|.     .+.|..+.+.|.++|.+..+.
T Consensus        85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~-----~i~G~~~~~~l~~~i~~~~~~  140 (147)
T 3gv1_A           85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR-----TQSGYSPMPQLEEIIRKNQQE  140 (147)
T ss_dssp             CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC-----EEESCCCTTHHHHHHHHTSCC
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE-----EeeCCCCHHHHHHHHHHHHHh
Confidence                000           1237899999998 4553     467999999999999987653

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.13  E-value=0.00013  Score=54.25  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             EEEEEeCCCChhhHHH-HHHHHHHHHHhcCCCCEEEEEEeCCCCC--------CC-CCCCCCCcEEEEEeCCCc
Q 018164          251 VLLEVYTPWCVTCETT-SKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~~~--------~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      .++.|+++||++|+.+ .+.+.+++.     .++.+..+|++.+.        +. .+++.++|++  |.+|+.
T Consensus        26 ~Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~   92 (118)
T 3c1r_A           26 EIFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKH   92 (118)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             cEEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            3667999999999998 777766531     13677788887663        22 3488899987  446643

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.11  E-value=0.0015  Score=53.06  Aligned_cols=95  Identities=11%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc----------------------cchhHHhhcCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED----------------------LAKPFLTLFGL  173 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~gi  173 (360)
                      +++.+|.|| +.| +.|....+.+.+++++|++ .+.++.|+.+...                      ....+.+.||+
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            467788888 899 9999999999999999986 4888888776310                      01367788898


Q ss_pred             C-----CCCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHhcCcc
Q 018164          174 E-----ESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLLHGTL  215 (360)
Q Consensus       174 ~-----~~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~g~~  215 (360)
                      .     .. |+.+ +++.++...+.+.|.    .+.+.|.+.++....|..
T Consensus       125 ~~~~g~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~  173 (195)
T 2bmx_A          125 LNADGVAD-RVTF-IVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDEL  173 (195)
T ss_dssp             BCTTSSBC-EEEE-EECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC---
T ss_pred             cccCCCcc-ceEE-EEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhCCC
Confidence            8     66 7774 555443333433333    378999999999887543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.10  E-value=0.0063  Score=48.16  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             cCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCC-CCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGL-DNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~  291 (360)
                      ..+.++|.||.+||. .|....+.+.++.+.++.. .++.+..|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            478999999999996 7999999998888877532 25777766554

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.09  E-value=0.00018  Score=56.40  Aligned_cols=45  Identities=20%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      ..+.++|.|| +.||+.|....|.+.++...++.. ++.+..+..+.
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~-~~~~v~vs~d~   74 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQV-NAVVLGISVDP   74 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGC-SSEEEEEESSC
T ss_pred             CCCeEEEEecCCCCCCccccchhhccccccccccc-CceEeeecccc
Confidence            3678999998 999999999999998888888653 56666666543

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.07  E-value=0.00023  Score=51.63  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             cEEEEEeC-----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-----CCCCCCCcEEEEEeCCCc
Q 018164          250 DVLLEVYT-----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       250 ~~~v~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-----~~~i~~~Pti~~~~~g~~  314 (360)
                      .++| |++     +||++|+.+.+.+.++        ++.+..+|++.+ ...     ..+..++|+++  .+|..
T Consensus        18 ~vvv-f~~g~~~~~~C~~C~~~~~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~--i~g~~   82 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKAYSNWPTYPQLY--VKGEL   82 (105)
T ss_dssp             SEEE-EESBCSSSBCTTHHHHHHHHHHHH--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--ETTEE
T ss_pred             CEEE-EEecCCCCCCCccHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE--ECCEE
Confidence            4444 666     9999999999999887        356778888776 321     13788999983  45533

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.06  E-value=0.0046  Score=48.60  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCC--------cccchhHHh-hcC--------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLT-LFG--------------  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~~-~~g--------------  172 (360)
                      .++++++.|+++| +.|....+.+.+++++++++ +.++.|+++.        ....+.+++ .++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4567889999999 99999999999999999875 9999998742        110112333 332              


Q ss_pred             ---------------C--CCCCC---ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          173 ---------------L--EESKN---TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       173 ---------------i--~~~~p---~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                                     +  ... |   +. .+++.++...+.+.|..+.+.|.+.|+..++
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~-p~~~~~-~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDI-QWNFAK-FLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCC-CSTTCE-EEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcc-cccccE-EEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                           2  222 4   55 3555444445555777888899999988764

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.06  E-value=0.00035  Score=49.20  Aligned_cols=53  Identities=19%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-C----CCCCCCCcEEEEEeCCC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-P----KLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~----~~~i~~~Pti~~~~~g~  313 (360)
                      .++.|+++||++|+.+.+.+++.        ++.+..+|++.+ .. .    ..++.++|++  |.+|.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK--------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT--------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            47789999999999998888764        356777888765 22 1    2478899976  34553

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.99  E-value=0.0027  Score=53.91  Aligned_cols=87  Identities=11%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C------------------CC-----------
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E------------------HP-----------  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~------------------~~-----------  296 (360)
                      .+.++|+|| +.||..|....+.+.++.+.|+.. ++.+..|.++.. .                  ++           
T Consensus        91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            578999998 999999999999999999999753 677777776542 1                  00           


Q ss_pred             CCCCC------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHh
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~  336 (360)
                      .+++.      .+|+++++....++. ..+.+    .++.+++.+.|...
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~-~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILR-QITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEE-EEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHhh
Confidence            01232      369999997665552 22223    56778888877653

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.98  E-value=0.00035  Score=56.61  Aligned_cols=43  Identities=14%  Similarity=0.328  Sum_probs=36.1

Q ss_pred             CccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .++++|.|++.||++|..+.|.+   ..+.+.+.+  ++.|..++...
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechh
Confidence            36889999999999999999986   678777765  68888888765

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=96.97  E-value=0.0052  Score=48.21  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCc--------ccchhH-Hhhc---------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE--------DLAKPF-LTLF---------------  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~--------~~~~~l-~~~~---------------  171 (360)
                      .+++++|.|+++| +.|....+.+.++.++++++ +.++.|+++.+        ...+.+ .+.+               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4567889999999 99999999999999999865 89998887531        000122 1333               


Q ss_pred             --------------CCCCC----CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          172 --------------GLEES----KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       172 --------------gi~~~----~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                                    |+.+.    .|+.+ +.+.++...+.+.|..+.+.|.+.|+..+.+
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~-lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKF-LVDRQGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEE-EECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEE-EECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                          22110    15553 4554444455557778889999999988764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.91  E-value=0.0018  Score=51.82  Aligned_cols=87  Identities=10%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----------------------CCCCCC--
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------------------PKLQVE--  301 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----------------------~~~~i~--  301 (360)
                      .++++|.|| +.||+.|....+.+.++.+.++.. ++.+..|.++.. .+                      ..+++.  
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            568888888 999999999999999999999763 577777766532 11                      012332  


Q ss_pred             ----------CCcEEEEEeCCCccCceEecC---CCCHHHHHHHHHHh
Q 018164          302 ----------EYPTLLFYPAGDKANPIKVSA---RSSSKNIAAFIKEQ  336 (360)
Q Consensus       302 ----------~~Pti~~~~~g~~~~~~~~~g---~~~~~~l~~~i~~~  336 (360)
                                ..|+.+++....++ ...+.+   ....+++.+.|++.
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I-~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRI-VEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBE-EEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEE-EEEEcCCCCCCCHHHHHHHHHHH
Confidence                      15889999655554 223443   34556777777654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=96.90  E-value=0.005  Score=49.53  Aligned_cols=94  Identities=19%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCC--------cccchhHHh-hc---------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLT-LF---------------  171 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~~-~~---------------  171 (360)
                      .+++++|.|++.| +.|....+.+.++.++|+++ +.++.|.++.        ....+.+++ .+               
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4567889999999 99999999999999999875 8888876541        110011111 11               


Q ss_pred             -----------------CCCCCCC---ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          172 -----------------GLEESKN---TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       172 -----------------gi~~~~p---~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                                       |+... |   +. .+++.++...+.+.|..+.+.|.+.|+..+++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~i-P~~~~~-~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAI-KWNFTS-FLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSC-CSTTCE-EEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             chhHHHHHHHhhcCCccCCCcc-ccceeE-EEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                             22222 4   55 35555444455567888999999999998864

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=96.89  E-value=0.0017  Score=51.31  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             CCCceEEEEEEec-cc-hHHHHHHHHHHHHhhcC----ceEEEEEeCCCcccc-------------------------hh
Q 018164          118 SPIKLQVYVFAKA-DD-LKSLLEPLEDIARNFKG----KIMFTAVDIADEDLA-------------------------KP  166 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~-~~~~~~~~~~la~~~~~----~i~f~~vd~~~~~~~-------------------------~~  166 (360)
                      .+++++|.|+..| ++ |....+.+.++.+++++    ++.++.|+++.....                         ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3567888999999 86 99999999999999984    599999987632000                         14


Q ss_pred             HHhhcCC---------------CCCCCceEEEEeCCCcccccCCCCC--CHHHHHHHHHHH
Q 018164          167 FLTLFGL---------------EESKNTVVTAFDNKAISKFLLESDL--TPSNIEEFCSRL  210 (360)
Q Consensus       167 l~~~~gi---------------~~~~p~~~~~~~~~~~~~y~~~~~~--~~~~i~~fi~~~  210 (360)
                      +++.||+               ... |+.+ +++ ++...+.+.|..  +.+.|.+.|+..
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~-P~~~-lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHT-ATTF-VVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEEC-CCEE-EEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecC-CEEE-EEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            5556664               344 7774 555 444444456666  888888888764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=96.87  E-value=0.0036  Score=47.76  Aligned_cols=86  Identities=12%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc-------------c----------chhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------L----------AKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------~----------~~~l~~~~g  172 (360)
                      .+++.++.|+++| +.|....+.+.++.++|++ .+.++.|+.+...             +          ...+.+.||
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            3467888999999 8899999999999999985 4888888766321             0          125678889


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHH
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS  208 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~  208 (360)
                      +... |+.+ +.+.++...+.   ..+.+.+.++++
T Consensus       111 v~~~-P~~~-lid~~G~i~~~---~~~~~~l~~~l~  141 (143)
T 4fo5_A          111 LRKG-FKNF-LINDEGVIIAA---NVTPEKLTEILK  141 (143)
T ss_dssp             GGGC-CCEE-EECTTSBEEEE---SCCHHHHHHHHT
T ss_pred             CCCC-CcEE-EECCCCEEEEc---cCCHHHHHHHHH
Confidence            9887 8874 44433322332   245677776664

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=96.87  E-value=0.0013  Score=51.81  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=35.0

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .++++|.|| +.||+.|....|.+.++.+++ .  ++.+..|..+
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~--~v~vv~Is~d   84 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S--NTIVLCISAD   84 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T--TEEEEEEESS
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CCEEEEEeCC
Confidence            578999998 899999999999999999988 3  6777777654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.86  E-value=0.0047  Score=48.28  Aligned_cols=91  Identities=13%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             CCc-eEEEEE-Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc------------------cchhHHhhcCCCC-
Q 018164          119 PIK-LQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED------------------LAKPFLTLFGLEE-  175 (360)
Q Consensus       119 ~~~-~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~gi~~-  175 (360)
                      ++. .++.|| +.| +.|....+.+.+++++|+++ +.++.|+.+...                  ....+.+.||+.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            344 778888 899 99999999999999999865 888888876210                  0137788999987 


Q ss_pred             ---CCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHh
Q 018164          176 ---SKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLL  211 (360)
Q Consensus       176 ---~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~  211 (360)
                         . |+.+ +.+.++...+.+.|.    ...+.+.+.++...
T Consensus       108 ~~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~  148 (161)
T 3drn_A          108 ILPA-RITF-VIDKKGIIRHIYNSQMNPANHVNEALKALKQIK  148 (161)
T ss_dssp             SSCC-CEEE-EECTTSBEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             Cccc-ceEE-EECCCCEEEEEEecCCCCCcCHHHHHHHHHHhh
Confidence               5 7774 555444444444452    23455666665543

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.84  E-value=0.00044  Score=50.85  Aligned_cols=53  Identities=11%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----C----CCC-CCCCCCcEEEEEeCCCc
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----E----HPK-LQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----~----~~~-~~i~~~Pti~~~~~g~~  314 (360)
                      +++|+++||++|+.+.+.|.++        ++.+..+|++..     +    +.. .+..++|++  |-+|..
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~   83 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL--------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKH   83 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            6779999999999999988875        234455666542     2    122 278899998  446643

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.84  E-value=0.0021  Score=44.55  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----CCC-CCCC-----CCCcEEEEEeCCCccCce
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EHP-KLQV-----EEYPTLLFYPAGDKANPI  318 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----~~~-~~~i-----~~~Pti~~~~~g~~~~~~  318 (360)
                      ..+++|+++||++|..+...+.++.    -  .+.+..+|...+     ++. ..+.     .++|++++  +|..    
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i--~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~----   71 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----I--AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEH----   71 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----C--CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEE----
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----C--CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEE----
Confidence            4578899999999999988887653    1  345555555443     121 2355     89999954  5532    


Q ss_pred             EecCCCCHHHHHHHHHHhcC
Q 018164          319 KVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       319 ~~~g~~~~~~l~~~i~~~~~  338 (360)
                       . |  ..+.+.+++.+.++
T Consensus        72 -i-~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           72 -I-G--GFTELKANADKILN   87 (89)
T ss_dssp             -E-E--SHHHHHHTHHHHTT
T ss_pred             -E-e--ChHHHHHHHHHHhc
Confidence             1 2  45677777776554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=96.80  E-value=0.00071  Score=46.19  Aligned_cols=56  Identities=7%  Similarity=-0.003  Sum_probs=43.6

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCCCCCceE
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      .+++|+.+| +.|+.+.+.+.++++++...+.++.+|.+ ..   ..+++.+|+... |+++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~gv~~v-Pt~~   60 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKAR---IAEAEKAGVKSV-PALV   60 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSST---HHHHHHHTCCEE-EEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhh---HHHHHHcCCCcC-CEEE
Confidence            367889999 99999999999998887655666666653 23   377889999888 8874

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=95.84  E-value=0.0002  Score=56.15  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=35.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHH-HHHhhc--CceEEEEEeCCCc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLED-IARNFK--GKIMFTAVDIADE  161 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~-la~~~~--~~i~f~~vd~~~~  161 (360)
                      .++++++.|+++| +.|....+.+.+ +..++.  ..+.++.|+++..
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~   79 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEP   79 (159)
Confidence            3467888999999 999999999998 888887  4588888887644

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=96.79  E-value=0.0015  Score=51.63  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=34.7

Q ss_pred             cCccEEEEEe-CCCChhhHH-HHHHHHHHHHHhcCCCCE-EEEEEeCC
Q 018164          247 SHKDVLLEVY-TPWCVTCET-TSKQIEKLAKHFKGLDNL-VIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~-~~~~~~~la~~~~~~~~~-~~~~id~~  291 (360)
                      ..++++|.|| +.||+.|.. ..|.+.++.+.+++. ++ .+..|..+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d   76 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGK-GVDIIACMAVN   76 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHT-TCCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            3567888876 999999999 999999999888642 57 77777654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.77  E-value=0.0015  Score=46.72  Aligned_cols=79  Identities=10%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      .+.+++|+.+| +.|+.+.+.|.+++.    .+.|..+|.+... +..+...+| ... |++  +.++.   .. ..+..
T Consensus        16 ~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~-~~el~~~~g-~~v-P~l--~~~g~---~~-~~~g~   82 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPE-NSTWYERYK-FDI-PVF--HLNGQ---FL-MMHRV   82 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSST-THHHHHHSS-SSC-SEE--EESSS---EE-EESSC
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcc-hHHHHHHHC-CCC-CEE--EECCE---EE-EecCC
Confidence            45677888889 999999988876653    3899999987211 247888999 766 765  33332   11 13558


Q ss_pred             CHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLL  211 (360)
Q Consensus       199 ~~~~i~~fi~~~~  211 (360)
                      +.+.|.+++..++
T Consensus        83 ~~~~l~~~l~~~~   95 (100)
T 1wjk_A           83 NTSKLEKQLRKLS   95 (100)
T ss_dssp             CHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHHHH
Confidence            8999999998765

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=96.77  E-value=0.0016  Score=51.54  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------------CCCCCCCC-
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EHPKLQVE-  301 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------------~~~~~~i~-  301 (360)
                      .++++|.|| +.||+.|....+.+.++.+.+ .  ++.+..|.++..                        .+..+++. 
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  123 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-E--GVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLI  123 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGGTCBB
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C--CceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHhCCEe
Confidence            578999998 899999999999999998877 3  566666654321                        11112232 


Q ss_pred             --------CCcEEEEEeCCCccCceEec-----CCCCHHHHHHHHHHh
Q 018164          302 --------EYPTLLFYPAGDKANPIKVS-----ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       302 --------~~Pti~~~~~g~~~~~~~~~-----g~~~~~~l~~~i~~~  336 (360)
                              ..|+++++..+.++ ...+.     +..+.+++.+.|++.
T Consensus       124 ~~~~~~g~~~p~~~liD~~G~i-~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          124 GEGALKGILARAVFIIDKEGKV-AYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBE-EEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             cccccCCceeeEEEEEcCCCeE-EEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                    25899999755554 23343     245678888888754

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=96.76  E-value=0.0017  Score=50.99  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             cCccEEEEEeC-CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC----------C---C---C---------CCC
Q 018164          247 SHKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE----------H---P---K---------LQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------~---~---~---------~~i  300 (360)
                      ..++++|.||+ .||+.|....+.+.++.+++ .  ++.+..|..+..+          +   +   +         +++
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~--~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  117 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D--NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T--TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C--CcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCC
Confidence            35789999994 99999999999999998888 3  6777777654310          0   0   1         133


Q ss_pred             C----C--CcEEEEEeCCCccCceEecC-----CCCHHHHHHHHHH
Q 018164          301 E----E--YPTLLFYPAGDKANPIKVSA-----RSSSKNIAAFIKE  335 (360)
Q Consensus       301 ~----~--~Pti~~~~~g~~~~~~~~~g-----~~~~~~l~~~i~~  335 (360)
                      .    +  .|+.+++..++++ ...+.|     ..+.+++.+.|++
T Consensus       118 ~~~~~g~~~p~~~liD~~G~i-~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          118 LINEWHLLARAVFVLDTDNTI-RYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBE-EEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccCCceEEEEEEEcCCCeE-EEEEecCCcCCCCCHHHHHHHHHh
Confidence            3    2  3899999655554 233433     3445778877764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=96.73  E-value=0.0016  Score=51.22  Aligned_cols=43  Identities=21%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             cCccEEEEEe-CCCChhhH-HHHHHHHHHHHHhcCCCCEE-EEEEeC
Q 018164          247 SHKDVLLEVY-TPWCVTCE-TTSKQIEKLAKHFKGLDNLV-IAKIDA  290 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~~~-~~~id~  290 (360)
                      ..++++|.|| +.||+.|. ...|.+.++.+.+++. ++. +..|..
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~   79 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISV   79 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEES
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEC
Confidence            4578999999 89999999 8899999999888642 455 555544

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=96.68  E-value=0.0023  Score=52.12  Aligned_cols=91  Identities=11%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc-------------------------cchhHHhh
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------------LAKPFLTL  170 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------------~~~~l~~~  170 (360)
                      +++.++.|| +.| +.|....+.+.+++++|+++ +.++.|+.+...                         ....+.+.
T Consensus        33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  112 (198)
T 1zof_A           33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD  112 (198)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence            457788888 889 99999999999999999753 888888766310                         01367788


Q ss_pred             cCCC-----CCCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHh
Q 018164          171 FGLE-----ESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLL  211 (360)
Q Consensus       171 ~gi~-----~~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~  211 (360)
                      ||+.     .. |+.+ +++.++...+.+.|.    .+.+.|.+.++...
T Consensus       113 ~~v~~~~g~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          113 YDVLFEEAIAL-RGAF-LIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             TTCEETTTEEC-EEEE-EEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             hCCcccCCccc-ceEE-EECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            9987     66 7774 454443333333333    36788999998876

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=96.64  E-value=0.0039  Score=49.85  Aligned_cols=42  Identities=12%  Similarity=0.014  Sum_probs=36.7

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|+++| +.|....+.|.+++++|+++ +.++.|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d   91 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCN   91 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECc
Confidence            3567888999999 99999999999999999875 899988875

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=96.63  E-value=0.00022  Score=56.38  Aligned_cols=91  Identities=7%  Similarity=0.039  Sum_probs=59.7

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----------------------CCCCC-
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----------------------KLQVE-  301 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----------------------~~~i~-  301 (360)
                      ..++++|.|| +.||+.|....+.+.++...+++. ++.+..|..+.. .+.                      .|++. 
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~  110 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  110 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence            4678888888 999999999888888888888653 566766665432 110                      12221 


Q ss_pred             ---------CCcEEEEEeCCCccCceEe----cCCCCHHHHHHHHHHhcC
Q 018164          302 ---------EYPTLLFYPAGDKANPIKV----SARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       302 ---------~~Pti~~~~~g~~~~~~~~----~g~~~~~~l~~~i~~~~~  338 (360)
                               ..|+.+++....++....+    .+..+.+++++.|++.++
T Consensus       111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence                     3688888865555421111    134578889888887654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=96.61  E-value=0.0037  Score=50.25  Aligned_cols=93  Identities=10%  Similarity=-0.017  Sum_probs=66.0

Q ss_pred             CCCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc----------------------cchhHHhhcC
Q 018164          118 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED----------------------LAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~g  172 (360)
                      .+++.++.|| +.| +.|....+.+.+++++|++ .+.++.|+.+...                      ....+++.||
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3467788888 899 9999999999999999985 4888888776310                      0136778889


Q ss_pred             CC------CCCCceEEEEeCCCcccccCCCC----CCHHHHHHHHHHHhc
Q 018164          173 LE------ESKNTVVTAFDNKAISKFLLESD----LTPSNIEEFCSRLLH  212 (360)
Q Consensus       173 i~------~~~p~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~~~~  212 (360)
                      +.      .. |+.+ +.+.++...+.+.|.    .+.+.|.+.++....
T Consensus       110 v~~~~~g~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          110 VLNEETGLAD-RGTF-IIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             CEETTTTEEC-EEEE-EECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCcCCCCcee-eEEE-EECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            87      55 7774 555444333433333    378899999988775

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.62  E-value=0.00033  Score=53.59  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             CC-ceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCcc----------------------cchhHHhhc
Q 018164          119 PI-KLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADED----------------------LAKPFLTLF  171 (360)
Q Consensus       119 ~~-~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~~----------------------~~~~l~~~~  171 (360)
                      ++ ++++.|+++| +.|....+.+.+++++++   ..+.++.|+++...                      ....+++.|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            44 7889999999 999999999999999993   35777777766331                      002577788


Q ss_pred             CCCCCCCceEEE
Q 018164          172 GLEESKNTVVTA  183 (360)
Q Consensus       172 gi~~~~p~~~~~  183 (360)
                      |+... |+++++
T Consensus       105 ~v~~~-P~~~li  115 (143)
T 2lus_A          105 GITGI-PALVIV  115 (143)
Confidence            88877 887533

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.59  E-value=0.0011  Score=48.31  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=41.5

Q ss_pred             cccccccccCccEEEEEeC-----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-----CCCCCCCcEEE
Q 018164          239 TFDDLVLNSHKDVLLEVYT-----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQVEEYPTLL  307 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-----~~~i~~~Pti~  307 (360)
                      .+++.+ . ... ++.|+.     +||++|..+...|.++        ++.+..+|++.+ ...     ..+..++|++ 
T Consensus         7 ~~~~~i-~-~~~-vvvy~~g~~~~~~Cp~C~~ak~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i-   74 (109)
T 1wik_A            7 GLKVLT-N-KAS-VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL-   74 (109)
T ss_dssp             CHHHHH-T-TSS-EEEEESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHh-c-cCC-EEEEEecCCCCCCCchHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence            455554 2 233 445666     9999999999888765        456888898876 321     1267889986 


Q ss_pred             EEeCCCc
Q 018164          308 FYPAGDK  314 (360)
Q Consensus       308 ~~~~g~~  314 (360)
                       |-+|..
T Consensus        75 -fi~g~~   80 (109)
T 1wik_A           75 -YVRGDL   80 (109)
T ss_dssp             -ECSSSE
T ss_pred             -EECCEE
Confidence             456644

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.50  E-value=0.0015  Score=51.93  Aligned_cols=42  Identities=12%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             ccEEEEEeCCCChhhHHH-HHHHHHHHHHhcCCCCEE-EEEEeCC
Q 018164          249 KDVLLEVYTPWCVTCETT-SKQIEKLAKHFKGLDNLV-IAKIDAS  291 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~-~~~id~~  291 (360)
                      +.+++.|++.||+.|..- .|.|.++...++.. ++. +.-|..+
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d   88 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAIN   88 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESS
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            467778999999999998 99999999988643 455 6666654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=96.48  E-value=0.0069  Score=47.11  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             ceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc------------------c--chhHHhhcCCC---
Q 018164          121 KLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------L--AKPFLTLFGLE---  174 (360)
Q Consensus       121 ~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------~--~~~l~~~~gi~---  174 (360)
                      +.++.|| +.| +.|....+.+.++++++++ .+.++.|+.+...                  .  ...+.+.||+.   
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            6788887 899 9999999999999999975 4888888775310                  0  23678889987   


Q ss_pred             -CCCC--ceEEEEeCCCcccccCCCC----CCHHHHHHHHHH
Q 018164          175 -ESKN--TVVTAFDNKAISKFLLESD----LTPSNIEEFCSR  209 (360)
Q Consensus       175 -~~~p--~~~~~~~~~~~~~y~~~~~----~~~~~i~~fi~~  209 (360)
                       +. |  +.+ +.+.++...+.+.|.    ...+.+.+.+..
T Consensus       118 ~~~-p~~~~~-lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          118 AGI-ANRGTF-VVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTE-ECSEEE-EECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CCC-eeeeEE-EECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence             55 6  553 454444334433343    245666666654

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.47  E-value=0.0015  Score=52.73  Aligned_cols=40  Identities=18%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +++++|.|++.||++|..+.|.+.++.+.+ +   +.|..+.+.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~---v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G---TDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T---SCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C---CeEEEEecc
Confidence            578999999999999999999999999988 3   566666664

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.46  E-value=0.0033  Score=52.95  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             cCccEEEEEe-CCCChhhH-HHHHHHHHHHHHhcCCCCE-EEEEEeCC
Q 018164          247 SHKDVLLEVY-TPWCVTCE-TTSKQIEKLAKHFKGLDNL-VIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~-~~~~~~~~la~~~~~~~~~-~~~~id~~  291 (360)
                      ..+.++|.|| +.||+.|. ...|.+.+++..+++. ++ .+..|..+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d   78 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVN   78 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESS
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcC
Confidence            3578999998 99999999 8999999999988643 57 67767654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.46  E-value=0.0022  Score=47.13  Aligned_cols=52  Identities=6%  Similarity=0.151  Sum_probs=36.4

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-------CC-CCCCCCCcEEEEEeCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-------HP-KLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-------~~-~~~i~~~Pti~~~~~g~  313 (360)
                      ++.|+++||++|..+.+.+.++        ++.+..+|++.. +       +. ..+..++|++++  +|.
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~--------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~   79 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL--------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKV   79 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc--------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCE
Confidence            5569999999999999888875        244566777653 2       11 226788999865  553

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.37  E-value=0.004  Score=50.80  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      ..++++|.|| +.||+.|....+.+.++.+.+ .  ++.+..|.++.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~--~v~vv~Is~D~  120 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E--NTVVLCISSDL  120 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T--TEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C--CCEEEEEECCC
Confidence            3678999998 789999999999999999998 3  67777776654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=96.31  E-value=0.0044  Score=49.82  Aligned_cols=44  Identities=18%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             Ccc-EEEEEeCCCChhhHH-HHHHHHHHHHHhcCCCCEE-EEEEeCCC
Q 018164          248 HKD-VLLEVYTPWCVTCET-TSKQIEKLAKHFKGLDNLV-IAKIDASA  292 (360)
Q Consensus       248 ~~~-~~v~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~~-~~~id~~~  292 (360)
                      .+. +++.|++.||+.|.. -.|.+.++++.++.. ++. +..|..+.
T Consensus        56 Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d~  102 (184)
T 3uma_A           56 GKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVND  102 (184)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESSC
T ss_pred             CCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            454 555567999999999 699999999999753 455 66666543

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=96.29  E-value=0.035  Score=44.10  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=61.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCC--------cccchhHHhh-cCCCC-----------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLTL-FGLEE-----------  175 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~~~-~gi~~-----------  175 (360)
                      .+++++|.|+++| +.|....+.+.+++++|+++ +.++.|.++.        ....+.+++. +|+.-           
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4567888899999 99999999999999999875 8888887543        1111244555 55431           


Q ss_pred             --------------CCCc----eEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          176 --------------SKNT----VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       176 --------------~~p~----~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                                    ..|+    . .+++.++...+.+.|..+.+.|.+.|...+.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~-~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWK-YLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCE-EEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceE-EEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                          0133    4 3444444444455677777766666666553

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.19  E-value=0.02  Score=46.84  Aligned_cols=42  Identities=7%  Similarity=0.056  Sum_probs=36.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|+++| +.|....+.|.+++++|+++ +.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4567889999999 89999999999999999865 888888875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=96.14  E-value=0.021  Score=45.52  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=36.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|+++| +.|....+.+.+++++|+++ +.++.|+++
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            3567888999999 99999999999999999865 888888765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=96.14  E-value=0.018  Score=45.55  Aligned_cols=83  Identities=7%  Similarity=0.042  Sum_probs=59.9

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc-------------------------------------
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-------------------------------------  161 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~-------------------------------------  161 (360)
                      ...++.|++.+ ++|.++.+.+.++.+++.+ +.+.+.+..-.                                     
T Consensus        23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~  101 (175)
T 3gyk_A           23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANET  101 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHH
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHH
Confidence            34567788888 9999999999999998865 77776653210                                     


Q ss_pred             -----------------------------ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          162 -----------------------------DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       162 -----------------------------~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                                                   .-...+.+.+||.+. |+++ + +   +..  +.|..+.+.+.+.|+..+
T Consensus       102 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gt-Pt~~-i-~---g~~--~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          102 GVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGT-PSFV-V-E---DAL--VPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSS-SEEE-E-T---TEE--ECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccC-CEEE-E-C---CEE--eeCCCCHHHHHHHHHHHH
Confidence                                         001235678899999 9884 3 2   233  368889999999998865

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.08  E-value=0.014  Score=46.32  Aligned_cols=42  Identities=14%  Similarity=0.114  Sum_probs=35.0

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHh--cCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHF--KGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~--~~~~~~~~~~id~~  291 (360)
                      .+.+++.|+..||++|..+.+.+.++.+.+  .+  ++.+...+..
T Consensus        27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~--~v~~~~~~~~   70 (175)
T 1z6m_A           27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSG--KVERIIKLFD   70 (175)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT--SEEEEEEECC
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC--cEEEEEEeCC
Confidence            456899999999999999999999988888  44  6777777654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=96.05  E-value=0.0012  Score=48.47  Aligned_cols=79  Identities=9%  Similarity=0.014  Sum_probs=49.3

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--cchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC-
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL-  198 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~-  198 (360)
                      +++|+++| +.|+.+.+.|.+++.+    +.++.+|.+...  ....+++.+|+.+. |++  +.++..  ...+.|.. 
T Consensus        22 vv~f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~-Pt~--~~~g~~--v~~~~~~~~   92 (116)
T 2e7p_A           22 VVVFSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTV-PNV--FIGGKQ--IGGCDTVVE   92 (116)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSS-CEE--EETTEE--EECHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCc-CEE--EECCEE--ECChHHHHH
Confidence            45599999 9999999999887654    345555554320  00258889999988 887  333221  11112222 


Q ss_pred             --CHHHHHHHHHHH
Q 018164          199 --TPSNIEEFCSRL  210 (360)
Q Consensus       199 --~~~~i~~fi~~~  210 (360)
                        +.+.|.+++...
T Consensus        93 ~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           93 KHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHTTCHHHHHHHT
T ss_pred             HHhCChHHHHHHHc
Confidence              555688888773

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=96.01  E-value=0.013  Score=47.64  Aligned_cols=100  Identities=8%  Similarity=0.029  Sum_probs=61.3

Q ss_pred             HHHHHHcCCCCCCCCCEEEEEecCCCCccccC-CCCChH----------HHHHHHhhccCCceee--cCccccccccc--
Q 018164           53 FEVAKVLYPDIKSTDHFLGIVKSEPDRYTGYE-ETFIMD----------KILQFLNYNKFPLVTK--LTDINSASVHS--  117 (360)
Q Consensus        53 ~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~-g~~~~~----------~l~~fi~~~~~p~v~~--l~~~~~~~~~~--  117 (360)
                      ...+..+|++   +.|++++   ++ .+. .. ++++.+          ++..++.....|.-..  ..-.++..+..  
T Consensus        40 ~~~a~~~gi~---gvP~fvi---ng-k~~-~~~~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~~~g~~y~~l~~p~  111 (197)
T 1un2_A           40 EKAAADVQLR---GVPAMFV---NG-KYQ-LNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPV  111 (197)
T ss_dssp             HHHHHHTTCC---SSSEEEE---TT-TEE-ECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCC
T ss_pred             HHHHHHcCCC---cCCEEEE---cc-eEe-cCccccccccHHHHHHHHHHHHHHHHhCcccccccccCCCCCceEccCCC
Confidence            4567889998   7899876   12 221 11 222222          2444554433333211  11233443322  


Q ss_pred             CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIAD  160 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~  160 (360)
                      ...+.++-||..| ++|..+.+.|   .++++++.+++.|..++...
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            2456789999999 9999999999   99999999899999999874

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=96.01  E-value=0.0022  Score=48.34  Aligned_cols=56  Identities=14%  Similarity=0.258  Sum_probs=36.4

Q ss_pred             EEEEeCCCChhhHHH-HHHHHHHHHHhcCCCCEEEEEEeCCCCC--------CC-CCCCCCCcEEEEEeCCCc
Q 018164          252 LLEVYTPWCVTCETT-SKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~~~~~id~~~~~--------~~-~~~i~~~Pti~~~~~g~~  314 (360)
                      +++|+++||++|..+ .+.+.+++.     ..+.+..+|++...        +. ..+..++|++  |-+|..
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~-----~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~g~~  104 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNV-----PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YINGKH  104 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCc-----cCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence            678999999999998 777766531     12445555655442        22 2478899997  445643

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=95.99  E-value=0.024  Score=45.29  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=36.3

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++.++.|++.| +.|....+.+.+++++++++ +.++.|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            3567888899999 99999999999999999865 888888765

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=95.89  E-value=0.0075  Score=47.38  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC------------------------CCCCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH------------------------PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~------------------------~~~~i  300 (360)
                      ..++++|.|| +.||+.|....+.+.++.+. .   ++.+..|..+.. .+                        ..+++
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~---~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E---EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T---TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C---CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            3578999998 78999999998888888766 2   566666654432 11                        01233


Q ss_pred             CC------CcEEEEEeCCCccCceEe----cCCCCHHHHHHHHHH
Q 018164          301 EE------YPTLLFYPAGDKANPIKV----SARSSSKNIAAFIKE  335 (360)
Q Consensus       301 ~~------~Pti~~~~~g~~~~~~~~----~g~~~~~~l~~~i~~  335 (360)
                      ..      .|+.+++....++....+    .+..+.+.+.+.|++
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            32      799999965555421111    124566788877764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=95.88  E-value=0.015  Score=46.77  Aligned_cols=41  Identities=12%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      .+.+++.|+.+||++|..+.+.+.++.+.+.+  ++.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCc
Confidence            45689999999999999999999999988865  688877776

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=95.87  E-value=0.0082  Score=41.05  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=54.1

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc-cchhHHhhcC--CCCCCCceEEEEeCCCcccccCCCCC
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFG--LEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~g--i~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      +++|+.+| +.|+.+.+.|.+++.++++ +.|..+|.+..+ ....+.+.+|  +... |+++  .++   ...   +. 
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~v-P~i~--~~g---~~i---~~-   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETV-PQIF--VDQ---QHI---GG-   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCS-CEEE--ETT---EEE---ES-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCcee-CeEE--ECC---EEE---EC-
Confidence            46677788 9999999999999998876 999999876431 0126778888  7777 8873  322   222   22 


Q ss_pred             CHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLL  211 (360)
Q Consensus       199 ~~~~i~~fi~~~~  211 (360)
                       .+.|.+++++-+
T Consensus        72 -~~~l~~~~~~~~   83 (85)
T 1ego_A           72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc
Confidence             367888887643

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=95.85  E-value=0.0096  Score=47.28  Aligned_cols=38  Identities=16%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             CccEEEEE-eCCCChhhH-HHHHHHHHHHHHhcCCCCEEEE
Q 018164          248 HKDVLLEV-YTPWCVTCE-TTSKQIEKLAKHFKGLDNLVIA  286 (360)
Q Consensus       248 ~~~~~v~f-~~~~c~~c~-~~~~~~~~la~~~~~~~~~~~~  286 (360)
                      .+.++|+| ++.||+.|. .-.|.|.+++..|+.. ++.+.
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~-gv~vv   82 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK-GVQVV   82 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEE
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence            45555555 599999999 4889999999998753 34443

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=95.85  E-value=0.02  Score=46.55  Aligned_cols=91  Identities=10%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc-------------------------cchhHHhh
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL  170 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~  170 (360)
                      +++.+|.|| +.| +.|....+.+.+++++|++ .+.|+.|+.+...                         ....+.+.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            457778888 888 9999999999999999975 4888888776310                         01357788


Q ss_pred             cCCC------CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHHh
Q 018164          171 FGLE------ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLL  211 (360)
Q Consensus       171 ~gi~------~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  211 (360)
                      ||+.      .. |+.+ +++.++...+.+.|    ..+.+.|.+.++...
T Consensus       116 ygv~~~~~g~~~-P~~~-lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          116 YGVLKEEDGVAY-RGLF-IIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HTCEETTTTEEC-EEEE-EECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccCCCCcee-eEEE-EECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            8887      55 7664 45444433333322    356789999998876

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=95.58  E-value=0.032  Score=46.07  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc-------------------------cchhHHhh
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL  170 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~  170 (360)
                      +++.+|.|| +.| +.|....+.|.+++++|+. .+.++.|.++...                         ....+.+.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            467778888 888 9999999999999999963 4888888765310                         01367788


Q ss_pred             cCCC------CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHHhcC
Q 018164          171 FGLE------ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       171 ~gi~------~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~~~g  213 (360)
                      ||+.      .. |+.+ +++.++...+.+.|    ..+.+.+.+.++..+..
T Consensus       136 ygv~~~~~g~~~-P~~~-liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~  186 (220)
T 1zye_A          136 YGVLLEGPGLAL-RGLF-IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFV  186 (220)
T ss_dssp             TTCEETTTTEEC-EEEE-EECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHT
T ss_pred             hCCeecCCCccc-ceEE-EECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence            8887      55 7764 55544433333222    35778999999887743

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=95.52  E-value=0.038  Score=45.38  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhc-CceEEEEEeCCCcc-------------------------cchhHHhh
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADED-------------------------LAKPFLTL  170 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~-~~i~f~~vd~~~~~-------------------------~~~~l~~~  170 (360)
                      +++.+|.|| +.| +.|....+.|.+++++|+ ..+.++.|..+...                         ....+.+.
T Consensus        52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  131 (213)
T 2i81_A           52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD  131 (213)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence            456778888 888 999999999999999996 34888877765310                         01356778


Q ss_pred             cCCC-----CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHHh
Q 018164          171 FGLE-----ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLL  211 (360)
Q Consensus       171 ~gi~-----~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  211 (360)
                      ||+.     .. |+.+ +++.++...+.+.+    ..+.+.|.+.|+...
T Consensus       132 ygv~~~~g~~~-p~~~-lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          132 YNVLFDDSVSL-RAFV-LIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             TTCEETTTEEC-EEEE-EECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCcc-cEEE-EECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            8887     55 6664 45544433443322    356889999988876

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=95.51  E-value=0.011  Score=47.75  Aligned_cols=43  Identities=14%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             CccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .++++|.|+..||++|..+.+.+   .++.+.+.+  ++.|..++..-
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~--~v~~~~~~~~~   66 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE--GTKMTKYHVEF   66 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT--TCCEEEEECSS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCC--CcEEEEEeccc
Confidence            37899999999999999999986   689888876  56666666543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=95.48  E-value=0.046  Score=42.90  Aligned_cols=42  Identities=5%  Similarity=0.097  Sum_probs=34.9

Q ss_pred             CCCceEEEEEEec-c-chHHHHHHHHHHHHhhcCc---eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-D-DLKSLLEPLEDIARNFKGK---IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~-~~~~~~~~~~~la~~~~~~---i~f~~vd~~  159 (360)
                      .+++++|.|+..| + .|....+.+.++.+++..+   +.++.|+++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d   78 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   78 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeC
Confidence            3567888999999 6 8999999999999988743   888888765

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=95.47  E-value=0.069  Score=43.26  Aligned_cols=94  Identities=9%  Similarity=-0.083  Sum_probs=61.5

Q ss_pred             CCCceEEEEEEec-cc-hHHHHHHHHHHHHhhc----CceEEEEEeCCCc-------------------------ccchh
Q 018164          118 SPIKLQVYVFAKA-DD-LKSLLEPLEDIARNFK----GKIMFTAVDIADE-------------------------DLAKP  166 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~-~~~~~~~~~~la~~~~----~~i~f~~vd~~~~-------------------------~~~~~  166 (360)
                      .+++++|.|+..| ++ |....+.|.++.+++.    +.+.++.|+.+..                         +....
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3567888899999 86 9999999999777775    3577777776520                         00124


Q ss_pred             HHhhcCCC-CCCC---------------ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcC
Q 018164          167 FLTLFGLE-ESKN---------------TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       167 l~~~~gi~-~~~p---------------~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +++.||+. .. |               +. .+.+..+...+.+.|..+.+.+.+.|...+..
T Consensus       120 ~~~~~gv~~~~-p~~~~~~~~~~~~~~~~~-~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~  180 (200)
T 2b7k_A          120 ACKKYRVYFST-PPNVKPGQDYLVDHSIFF-YLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  180 (200)
T ss_dssp             HHHHTTC---------------CTTTCCCE-EEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHcCcEEee-ccccCCCCCceeeecceE-EEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            67778886 33 3               33 35555444444456777888888888887754

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=95.38  E-value=0.019  Score=48.00  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             ccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC------------------CC--C-----------
Q 018164          249 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------EH--P-----------  296 (360)
Q Consensus       249 ~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------------------~~--~-----------  296 (360)
                      +.++|+|| +.||+.|....+.+.++...|+.. ++.+..|.++..                  .+  +           
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~-~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR-GVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            47888888 999999999999999999988653 577777765431                  11  0           


Q ss_pred             CCCCC------------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          297 KLQVE------------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 ~~~i~------------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      .+++.            ..|+++++...+++. ..+.+    .++.++|.+.|....
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~-~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKLK-LSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBEE-EEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHHH
Confidence            12332            479999996655542 22322    468899999888654

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=95.38  E-value=0.028  Score=46.60  Aligned_cols=86  Identities=14%  Similarity=0.206  Sum_probs=59.0

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--------------------C--CC-----------
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------E--HP-----------  296 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--------------------~--~~-----------  296 (360)
                      .+|+.|++.||+.|....+.+.++...|+.. ++.+..+.++..                    .  .+           
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            4566668999999999999999999999753 677777765532                    0  10           


Q ss_pred             CCCCC------------CCcEEEEEeCCCccCceEecC----CCCHHHHHHHHHHhc
Q 018164          297 KLQVE------------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQL  337 (360)
Q Consensus       297 ~~~i~------------~~Pti~~~~~g~~~~~~~~~g----~~~~~~l~~~i~~~~  337 (360)
                      .+++.            ..|+++++..++++. ..+.|    .++.++|.+.|+...
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~-~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLK-LSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEE-EEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHHH
Confidence            12331            379999996655552 23322    468899999887654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=95.33  E-value=0.039  Score=44.34  Aligned_cols=92  Identities=13%  Similarity=0.182  Sum_probs=63.5

Q ss_pred             CCCceEEEEE-Eec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc-------------------------cchhHHh
Q 018164          118 SPIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLT  169 (360)
Q Consensus       118 ~~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~  169 (360)
                      .+++.++.|| +.| +.|....+.+.+++++|++ .+.++.|+.+...                         ....+.+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            3457788888 888 9999999999999999963 4888888765310                         0135778


Q ss_pred             hcCCC-----CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHHh
Q 018164          170 LFGLE-----ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLL  211 (360)
Q Consensus       170 ~~gi~-----~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~~  211 (360)
                      .||+.     .. |+.+ +++.++...+.+.|    ..+.+.+.+.++...
T Consensus       110 ~~gv~~~~g~~~-P~~~-liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVAL-RAFV-LIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEEC-CEEE-EECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCcee-eEEE-EEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            88987     55 7774 55544433333323    246788888888765

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=95.21  E-value=0.12  Score=40.29  Aligned_cols=91  Identities=11%  Similarity=0.034  Sum_probs=59.3

Q ss_pred             CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc--------------------cchhHHhhcCCCCC
Q 018164          119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~gi~~~  176 (360)
                      +++.++.|+..|  +.|....+.+.+++++| ..+.++.|+.+...                    ....+.+.||+...
T Consensus        44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~  122 (167)
T 2jsy_A           44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK  122 (167)
T ss_dssp             TSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred             CCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence            557888889887  88999999999999999 66888888766311                    01245666777642


Q ss_pred             -----CCceEEEEeCCCcccccCCC-----CCCHHHHHHHHHHHh
Q 018164          177 -----KNTVVTAFDNKAISKFLLES-----DLTPSNIEEFCSRLL  211 (360)
Q Consensus       177 -----~p~~~~~~~~~~~~~y~~~~-----~~~~~~i~~fi~~~~  211 (360)
                           .|+. .+.+.++...+.+.|     ..+.+.+.+.++..+
T Consensus       123 ~~g~~~p~~-~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          123 ELRLLARSV-FVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTCSBCCEE-EEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             cCCceeeEE-EEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence                 1555 355544433333322     235677888777654

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.022  Score=42.16  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=36.7

Q ss_pred             CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEE---EEEEeCCCC-CCC-C----CCCCCCcEEEEEeCCC
Q 018164          248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLV---IAKIDASAN-EHP-K----LQVEEYPTLLFYPAGD  313 (360)
Q Consensus       248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~---~~~id~~~~-~~~-~----~~i~~~Pti~~~~~g~  313 (360)
                      ..+++|+--+    |||++|......|.+..        +.   +..+|+..+ ++. .    .+..++|.+++  +|.
T Consensus        15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g--------v~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI--~g~   83 (121)
T 3gx8_A           15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQG--------VDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV--NKE   83 (121)
T ss_dssp             SCSEEEEESBCSSSBCTTHHHHHHHHHHHHT--------BCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE--TTE
T ss_pred             cCCEEEEEeccCCCCCCccHHHHHHHHHHcC--------CCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            3445554444    69999999998888862        33   667787766 332 1    16778899844  553

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=94.95  E-value=0.0072  Score=45.74  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             cEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-C----CCCCCCcEEEEEeCCC
Q 018164          250 DVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLLFYPAGD  313 (360)
Q Consensus       250 ~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~----~~i~~~Pti~~~~~g~  313 (360)
                      .++|+.++    |||++|......|.++        ++.+..+|++.+ +.. .    .+..++|.++  -+|.
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~--------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf--I~G~   99 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQLW--VDGE   99 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT--------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE--ETTE
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc--------CCceEEEECCCCHHHHHHHHHHHCCCCcCEEE--ECCE
Confidence            45554444    9999999988887665        356777888765 221 1    2677889874  3553

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=94.78  E-value=0.035  Score=45.67  Aligned_cols=83  Identities=12%  Similarity=0.086  Sum_probs=57.1

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeC---------------------------------------
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI---------------------------------------  158 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~---------------------------------------  158 (360)
                      +.+.++.|+++| ++|+++.+.+.++++.   ++.+.++.-                                       
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           86 EKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             CCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            345678899999 9999999999998764   355554431                                       


Q ss_pred             -CCc-ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          159 -ADE-DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       159 -~~~-~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                       ... .-+..+++.+||+++ |+++ +.++   ..  +.|..+.+.|.+++....
T Consensus       163 ~~~~v~~~~~l~~~~gV~gt-Pt~v-~~dG---~~--~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          163 CDVDIADHYALGVQLGVSGT-PAVV-LSNG---TL--VPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CSCCHHHHHHHHHHHTCCSS-SEEE-CTTS---CE--EESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcc-CEEE-EcCC---eE--ecCCCCHHHHHHHHHHhh
Confidence             100 011356788999999 9883 3222   23  367789999999998764

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.78  E-value=0.036  Score=40.27  Aligned_cols=54  Identities=9%  Similarity=0.076  Sum_probs=35.9

Q ss_pred             cEEEEEeCCCChhhH------HHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----C-CC--------CCCCCcEEEEE
Q 018164          250 DVLLEVYTPWCVTCE------TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----P-KL--------QVEEYPTLLFY  309 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~------~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~-~~--------~i~~~Pti~~~  309 (360)
                      ..+++|+.+||+.|.      ++...|++.        ++.+..+|++.+ +.    . .+        +...+|.++  
T Consensus         8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~--------gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vf--   77 (111)
T 2ct6_A            8 MVIRVFIASSSGFVAIKKKQQDVVRFLEAN--------KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIF--   77 (111)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEE--
T ss_pred             cEEEEEEcCCCCCcccchhHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEE--
Confidence            347788999999999      565555542        467888898876 22    1 22        556788874  


Q ss_pred             eCCC
Q 018164          310 PAGD  313 (360)
Q Consensus       310 ~~g~  313 (360)
                      -+|.
T Consensus        78 i~g~   81 (111)
T 2ct6_A           78 NGDR   81 (111)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            3553

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.73  E-value=0.021  Score=39.31  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             EEEEeCC----CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC-----CC-CC----C-CCCCC-----CCcEEEEEeC
Q 018164          252 LLEVYTP----WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EH----P-KLQVE-----EYPTLLFYPA  311 (360)
Q Consensus       252 ~v~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~-~~----~-~~~i~-----~~Pti~~~~~  311 (360)
                      +++|+.+    ||++|.+....|++.        ++.+-.+|++     .+ +.    . ..+..     ++|++++ .+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~--------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~   72 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PD   72 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TT
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc--------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-EC
Confidence            5678899    999999988877764        3556677877     33 22    1 12556     8998854 24


Q ss_pred             CC
Q 018164          312 GD  313 (360)
Q Consensus       312 g~  313 (360)
                      |.
T Consensus        73 g~   74 (87)
T 1aba_A           73 GS   74 (87)
T ss_dssp             SC
T ss_pred             CE
Confidence            43

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=94.71  E-value=0.012  Score=42.88  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             EEEEeC-----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC----CC-CCCCCcEEEEEeCC
Q 018164          252 LLEVYT-----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~-----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~----~~-~i~~~Pti~~~~~g  312 (360)
                      +|.|..     +||++|.+....|.+.        ++.+..+|++.+ +..    .+ +..++|.+++  +|
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi--~g   79 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHKH--------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV--SG   79 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--TT
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHHc--------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE--CC
Confidence            445666     9999999998888764        345666787765 331    11 6678999844  55

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=94.63  E-value=0.037  Score=45.72  Aligned_cols=87  Identities=17%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC--C-----------CCC
Q 018164          250 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH--P-----------KLQ  299 (360)
Q Consensus       250 ~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~--~-----------~~~  299 (360)
                      .+|+.|++.||+.|....+.+.++...|+.. ++.+..+.++..                 .+  +           .++
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~-~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhC
Confidence            4444558999999999999999999999753 677777766531                 11  0           013


Q ss_pred             CC------------CCcEEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHhc
Q 018164          300 VE------------EYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQL  337 (360)
Q Consensus       300 i~------------~~Pti~~~~~g~~~~~~~-~~--g~~~~~~l~~~i~~~~  337 (360)
                      +.            ..|+++++...+++.... +.  ..++.++|.+.|+...
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            31            368999996655552222 21  2478999999887654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=94.56  E-value=0.016  Score=42.02  Aligned_cols=56  Identities=21%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             CccEEEEEeC----CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CC----CCCCCcEEEEEeCCC
Q 018164          248 HKDVLLEVYT----PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KL----QVEEYPTLLFYPAGD  313 (360)
Q Consensus       248 ~~~~~v~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~----~i~~~Pti~~~~~g~  313 (360)
                      ..+++|+--+    |||++|.+....|.+.        ++.+..+|++.+ +.. .+    +..++|.+++  +|.
T Consensus        17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~--------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi--~g~   82 (109)
T 3ipz_A           17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNL--------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI--GGE   82 (109)
T ss_dssp             SSSEEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE--TTE
T ss_pred             cCCEEEEEecCCCCCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE--CCE
Confidence            3345544433    6999999998888775        355667787665 332 11    6788997743  553

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=94.45  E-value=0.13  Score=42.36  Aligned_cols=91  Identities=7%  Similarity=0.076  Sum_probs=61.0

Q ss_pred             CCCceEEEEEE-ec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc-------------------------cchhHHh
Q 018164          118 SPIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------------LAKPFLT  169 (360)
Q Consensus       118 ~~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------------~~~~l~~  169 (360)
                      .+++.+|.|+. .| +.|....+.+.++.++|+++ +.|+.|..+...                         ....+.+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            45677888885 88 99999999999999999864 888888776321                         0124667


Q ss_pred             hcCCC------CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHH
Q 018164          170 LFGLE------ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRL  210 (360)
Q Consensus       170 ~~gi~------~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~  210 (360)
                      .||+.      .. |+.+ +++.++...+.+.+    ....+.+.+.+...
T Consensus       148 ~ygv~~~~~g~~~-P~~~-lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYGVFDEEDGNAF-RGLF-IIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTTCBCTTTSSBC-EEEE-EECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeecCCCCcc-ceEE-EECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78887      44 6664 55544433343322    23567777777664

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=94.34  E-value=0.087  Score=42.22  Aligned_cols=43  Identities=14%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             CccEEEEEeCCCChhhHHHHHHH-HHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQI-EKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~-~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .++++|.|++.+|++|..+.+.+ .++.+.+..  ++.+..+....
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~--~v~~~~~~l~~   60 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD--IVAFTPFHLET   60 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT--TCEEEEEECTT
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC--ceEEEEEecCc
Confidence            45688899999999999999999 999988865  56676666543

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=94.25  E-value=0.023  Score=39.71  Aligned_cols=51  Identities=10%  Similarity=0.036  Sum_probs=34.7

Q ss_pred             EEEEeCCCChhh------HHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-----CCC--CCCCcEEEEEeCC
Q 018164          252 LLEVYTPWCVTC------ETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-----KLQ--VEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~~~c~~c------~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-----~~~--i~~~Pti~~~~~g  312 (360)
                      ++.|+++||+.|      ......++..        ++.+..+|++.+ +..     ..+  ..++|.+++  +|
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi--~g   68 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN--GN   68 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE--TT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE--CC
Confidence            667899999999      6666655542        466778888876 221     235  568998843  55

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=94.15  E-value=0.11  Score=42.44  Aligned_cols=81  Identities=12%  Similarity=0.139  Sum_probs=55.2

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC-------------------------------------
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD-------------------------------------  160 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~-------------------------------------  160 (360)
                      +...++.|+++| ++|+++.+.++++.+.  + +.+.++...-                                     
T Consensus        86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             CSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            345677888889 9999999999997763  3 6655442210                                     


Q ss_pred             --c--ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          161 --E--DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       161 --~--~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                        .  .-+..+++.+||+++ |+++ +.+   +.  .+.|..+.+.|.+++..
T Consensus       163 ~~~~v~~~~~l~~~~gV~gT-Pt~v-i~n---G~--~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          163 TPNIVKKHYELGIQFGVRGT-PSIV-TST---GE--LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CSSHHHHHHHHHHHHTCCSS-CEEE-CTT---SC--CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcC-CEEE-EeC---CE--EecCCCCHHHHHHHHHh
Confidence              0  001356788999999 9984 322   22  34677899999999876

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=93.78  E-value=0.11  Score=41.01  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID  289 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id  289 (360)
                      .++++|.|..-.|++|..+.+.+.++.+.+.+  ++.+..+.
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~   60 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNH   60 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC--ceEEEEEe
Confidence            56889999999999999999999999988876  44444443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=93.76  E-value=0.21  Score=38.53  Aligned_cols=41  Identities=10%  Similarity=0.097  Sum_probs=33.2

Q ss_pred             CCceEEEEEE-ec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          119 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      +++.++.||. .| +.|....+.+.++.++|+++ +.++.|..+
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d   78 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD   78 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4467788886 78 89999999999999999754 777777766

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=93.28  E-value=0.25  Score=38.82  Aligned_cols=39  Identities=8%  Similarity=0.079  Sum_probs=32.1

Q ss_pred             CCceEEEEEEec--cchHHHHHHHHHHHHhhcCceEEEEEeCC
Q 018164          119 PIKLQVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIA  159 (360)
Q Consensus       119 ~~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~~i~f~~vd~~  159 (360)
                      +++.+|.|+..|  +.|....+.|.+++++  ..+.|+.|+.+
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D   84 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKD   84 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECC
Confidence            557788888777  7899999999999988  45888888765

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=93.26  E-value=0.51  Score=39.89  Aligned_cols=81  Identities=15%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-------------------CC-CCCCCCC--cE
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-------------------HP-KLQVEEY--PT  305 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------------------~~-~~~i~~~--Pt  305 (360)
                      ....+.+|++++|++|......+.+++..+    ++....++.+..+                   +. .++..++  |.
T Consensus        42 ~~~~VelyTs~gCp~C~~Ak~lL~~~~~~~----~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPq  117 (270)
T 2axo_A           42 VKGVVELFTSQGCASCPPADEALRKMIQKG----DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQ  117 (270)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHHT----SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSE
T ss_pred             CCcEEEEEeCCCCCChHHHHHHHHHhhccC----CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCE
Confidence            335788899999999999999999998764    3432333432222                   11 3477777  99


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      +++  +|..    ...| .+.+.|.+.|.+....
T Consensus       118 I~I--ng~~----~v~G-~d~~~l~~~l~~~~~~  144 (270)
T 2axo_A          118 AIL--NGRD----HVKG-ADVRGIYDRLDAFKRE  144 (270)
T ss_dssp             EEE--TTTE----EEET-TCHHHHHHHHHHHHHT
T ss_pred             EEE--CCEE----eecC-CCHHHHHHHHHHhhcc
Confidence            866  5542    2334 3578888888765443

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=92.79  E-value=0.058  Score=36.27  Aligned_cols=74  Identities=12%  Similarity=0.127  Sum_probs=46.0

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS  201 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~  201 (360)
                      +++|+.+| +.|+++.+.+.+.      .+.|..+|.+..+.....+..+|+... |+++  .++   ...   +..+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~v-P~~~--~~g---~~~---~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQL-PVVI--AGD---LSW---SGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSS-CEEE--ETT---EEE---ESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCcc-CEEE--ECC---EEE---ecCCHH
Confidence            46677788 9999998887753      267778888754311223345788877 8772  222   222   346677


Q ss_pred             HHHHHHHHHh
Q 018164          202 NIEEFCSRLL  211 (360)
Q Consensus       202 ~i~~fi~~~~  211 (360)
                      .|.+++.++.
T Consensus        68 ~l~~~l~~~~   77 (81)
T 1h75_A           68 MINRLHPAPH   77 (81)
T ss_dssp             HHGGGSCCC-
T ss_pred             HHHHHHhccc
Confidence            7776665443

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=92.72  E-value=0.2  Score=41.88  Aligned_cols=86  Identities=6%  Similarity=0.009  Sum_probs=56.4

Q ss_pred             ceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC---------------------------------------
Q 018164          121 KLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD---------------------------------------  160 (360)
Q Consensus       121 ~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~---------------------------------------  160 (360)
                      ..++.|++++ +.|.++.+.+.++.+.  +++.|.++...-                                       
T Consensus        99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~~  176 (241)
T 1v58_A           99 VIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  176 (241)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcccc
Confidence            3567777888 9999999999887775  467777654310                                       


Q ss_pred             ----c----ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          161 ----E----DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       161 ----~----~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                          .    .-+..+++.+||++. |+++ +.+.+ +....+.|..+.+.|.++++..+
T Consensus       177 ~~~~~~~~v~~~~~l~~~~gv~gt-Pt~v-i~~~~-G~~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          177 VSTEQMKVLSDNEKLMDDLGANVT-PAIY-YMSKE-NTLQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCSS-CEEE-EEETT-TEEEEEESSCCHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCC-CEEE-EECCC-CCEEEecCCCCHHHHHHHHHHHH
Confidence                0    001245678899999 9984 44432 22223467788999888887644

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=92.58  E-value=0.3  Score=31.87  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             EEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHH
Q 018164          123 QVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS  201 (360)
Q Consensus       123 ~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~  201 (360)
                      +++|+.+| +.|++..+.+.++      .+.|..+|.+..+.....++.+|+... |+++ +  ++  ...   +..+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~v-P~l~-~--~g--~~~---~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQA-PVVE-V--DG--EHW---SGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCC-CEEE-E--TT--EEE---ESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCcc-CEEE-E--CC--eEE---cCCCHH
Confidence            45677788 8999988887754      267777888755311122347888777 8774 2  22  222   346788


Q ss_pred             HHHHHH
Q 018164          202 NIEEFC  207 (360)
Q Consensus       202 ~i~~fi  207 (360)
                      .|.+++
T Consensus        68 ~l~~~l   73 (75)
T 1r7h_A           68 RIKQLQ   73 (75)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887776

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=91.91  E-value=0.33  Score=38.75  Aligned_cols=40  Identities=8%  Similarity=0.017  Sum_probs=33.9

Q ss_pred             CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeC
Q 018164          119 PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI  158 (360)
Q Consensus       119 ~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~  158 (360)
                      +.+.++.|++.| ++|..+.+.+.++.+++.+++.|..+..
T Consensus        25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            345678888888 9999999999999999998888886654

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=91.75  E-value=0.39  Score=38.87  Aligned_cols=45  Identities=16%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHH-HHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQI-EKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~-~~la~~~~~~~~~~~~~id~~  291 (360)
                      +.+.+++.|....|++|..+.+.+ ..+.+.+....++.|...+..
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            355789999999999999998876 667677743347888877754

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=91.74  E-value=0.43  Score=39.01  Aligned_cols=88  Identities=13%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CCC-----------
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EHP-----------  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~~-----------  296 (360)
                      .+.++++|| +.||+.|..-...|.+....|+.. ++.+.-|.++..                   ..+           
T Consensus        52 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~-g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak  130 (216)
T 3sbc_A           52 GKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ-GAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSR  130 (216)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC-CceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHH
Confidence            578889999 999999999999999999998753 577777765541                   000           


Q ss_pred             CCCC------CCCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHHh
Q 018164          297 KLQV------EEYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i------~~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~~  336 (360)
                      .|++      ..+++++++...+.++.+.+.   -.|+.+++++.|+..
T Consensus       131 ~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          131 DYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            0122      136778888666665333333   368999999887753

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=91.48  E-value=0.29  Score=38.62  Aligned_cols=41  Identities=12%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             ccEEEEEeCCCChhhHH-HHHHHHHHHHHhcCCCCE-EEEEEeC
Q 018164          249 KDVLLEVYTPWCVTCET-TSKQIEKLAKHFKGLDNL-VIAKIDA  290 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~-~~~~~~~la~~~~~~~~~-~~~~id~  290 (360)
                      +.+|+.|++.||+.|.. -.+.|.+.+..|+.. ++ .++-|-+
T Consensus        49 ~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~-g~d~VigIS~   91 (176)
T 4f82_A           49 RVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA-GIDEIWCVSV   91 (176)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEES
T ss_pred             eEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence            35566778999999999 899999999998643 34 4544544

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=91.46  E-value=1.5  Score=35.85  Aligned_cols=41  Identities=7%  Similarity=-0.015  Sum_probs=33.9

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|++.| +.|. -.+.|+++.++|+++ +.++.|.|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            4567888899999 8898 688999999999854 888888765

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=90.69  E-value=0.12  Score=37.92  Aligned_cols=57  Identities=12%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CccEEEEEe----CCCChhhHHHHHHHHHHHHHhcCCCCE-EEEEEeCCCC-CCCC----C-CCCCCcEEEEEeCCCc
Q 018164          248 HKDVLLEVY----TPWCVTCETTSKQIEKLAKHFKGLDNL-VIAKIDASAN-EHPK----L-QVEEYPTLLFYPAGDK  314 (360)
Q Consensus       248 ~~~~~v~f~----~~~c~~c~~~~~~~~~la~~~~~~~~~-~~~~id~~~~-~~~~----~-~i~~~Pti~~~~~g~~  314 (360)
                      ..+++|+.-    .|.|++|.+....|...        .+ .+..+|+..+ ++..    + +..++|.|+  -+|+.
T Consensus        19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~--------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIF--I~g~~   86 (118)
T 2wul_A           19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLH--------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY--LNGEF   86 (118)
T ss_dssp             HSSEEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEE--ETTEE
T ss_pred             cCCEEEEEcCCCCCCCCHHHHHHHHHHHHh--------CCcCeEeecccCCHHHHHHHHHhccCCCCCeEe--ECCEE
Confidence            345555443    36899999988777554        23 2666787766 4432    1 667888884  45643

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=90.57  E-value=0.23  Score=35.21  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=38.0

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc----ccchhHHhhcCCCCCCCce
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE----DLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~----~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+++|+.+| +.|+.+.+.|.+++..+.+   |..+|.+..    .....+.+.+|+... |++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~v-P~i   72 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTV-PRV   72 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCS-CEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCc-CeE
Confidence            367788889 9999999999887766543   444555532    111246778898877 887

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=90.54  E-value=0.59  Score=37.02  Aligned_cols=44  Identities=14%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHH-HHHHHHhcCCCCEEEEEEeC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQI-EKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~-~~la~~~~~~~~~~~~~id~  290 (360)
                      +.+..++.|+.+.|++|..+.+.+ ..+.+.+....++.+.....
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~   54 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNL   54 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEec
Confidence            345689999999999999999988 57877775333566665554

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=90.48  E-value=1.1  Score=34.28  Aligned_cols=38  Identities=8%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             eEEEEE-Eec-cchHHHHHHHHHHHHhhcCceEEEEEeCC
Q 018164          122 LQVYVF-AKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA  159 (360)
Q Consensus       122 ~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~  159 (360)
                      .++.|| ..| +.|....+.|.++.++|+++-.++.|..+
T Consensus        38 vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d   77 (159)
T 2a4v_A           38 VVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSAD   77 (159)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence            445555 678 89999999999999999743255555443

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=90.31  E-value=0.22  Score=37.05  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=38.5

Q ss_pred             cccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCC----C-CCCCCCcEEEEEeC
Q 018164          239 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP----K-LQVEEYPTLLFYPA  311 (360)
Q Consensus       239 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~----~-~~i~~~Pti~~~~~  311 (360)
                      .|.+.+ +.+ + +++|..+||++|..+...|.+.. .+.-  .+....+|...+  .+.    . .+..++|++++  +
T Consensus         6 ~~~~ii-~~~-~-Vvvysk~~Cp~C~~ak~lL~~~~-~~~v--~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~   77 (127)
T 3l4n_A            6 EYSLIL-DLS-P-IIIFSKSTCSYSKGMKELLENEY-QFIP--NYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--N   77 (127)
T ss_dssp             HHHHHH-TSC-S-EEEEECTTCHHHHHHHHHHHHHE-EEES--CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred             HHHHHH-ccC-C-EEEEEcCCCccHHHHHHHHHHhc-ccCC--CcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--C
Confidence            455554 222 2 77899999999999988877741 0111  234444443322  121    1 26788999954  5


Q ss_pred             CC
Q 018164          312 GD  313 (360)
Q Consensus       312 g~  313 (360)
                      |.
T Consensus        78 G~   79 (127)
T 3l4n_A           78 GV   79 (127)
T ss_dssp             TE
T ss_pred             CE
Confidence            53

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=90.26  E-value=0.38  Score=40.40  Aligned_cols=86  Identities=10%  Similarity=0.033  Sum_probs=57.5

Q ss_pred             EEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcc------------------------cchhHHhhcCCC----
Q 018164          125 YVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------------LAKPFLTLFGLE----  174 (360)
Q Consensus       125 ~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~gi~----  174 (360)
                      .|+++| ..|....+.|.+++++|++ .+.++.|.++...                        ....+++.||+.    
T Consensus        40 ~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~  119 (249)
T 3a2v_A           40 SHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES  119 (249)
T ss_dssp             CCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTC
T ss_pred             EEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccC
Confidence            345667 8899999999999999985 3888888775310                        013577888886    


Q ss_pred             ---CCCCceEEEEeCCCcccccCCC----CCCHHHHHHHHHHHhc
Q 018164          175 ---ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLLH  212 (360)
Q Consensus       175 ---~~~p~~~~~~~~~~~~~y~~~~----~~~~~~i~~fi~~~~~  212 (360)
                         .. |..+ +++.++...+.+.+    ..+.+.|.+.|+..+.
T Consensus       120 g~~~~-p~~f-IID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq~  162 (249)
T 3a2v_A          120 ATHTV-RGVF-IVDARGVIRTMLYYPMELGRLVDEILRIVKALKL  162 (249)
T ss_dssp             SSSCC-EEEE-EECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred             CCccc-ceEE-EECCCCeEEEEEecCCcccchhHHHHHHHHHHHh
Confidence               33 6664 55544433333222    3578999999988763

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=89.67  E-value=2.1  Score=34.67  Aligned_cols=41  Identities=5%  Similarity=-0.071  Sum_probs=33.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA  159 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~  159 (360)
                      .+++++|.|++.| +.| .-.+.|.++.++|+++ +.++.|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            3567888899999 889 5678999999999854 888888765

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=89.51  E-value=0.36  Score=37.63  Aligned_cols=55  Identities=11%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +++.++.|| ..| +.|....+.+.++.+++ ..+.++.|..+.....+.+++.+++.
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~  103 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQ  103 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCC
Confidence            456667776 678 89999999999999999 66889888877543223566777764

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=89.40  E-value=0.83  Score=37.67  Aligned_cols=42  Identities=10%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CccEEEEEeCCCChhhHHHHHH-HHHHHHHhcCCCCEEEEEEe
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQ-IEKLAKHFKGLDNLVIAKID  289 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~-~~~la~~~~~~~~~~~~~id  289 (360)
                      .+.+++.|....|++|..+.+. +..+.+.+-...++.+...+
T Consensus        39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            4567899999999999999985 57787777433367776655

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=89.12  E-value=0.32  Score=37.77  Aligned_cols=42  Identities=5%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE  161 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~  161 (360)
                      +++.++.|| +.| +.|....+.|.++.++| ..+.++.|..+..
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~   86 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLP   86 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCH
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCH
Confidence            456667777 678 99999999999999999 5688888887643

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=88.69  E-value=0.8  Score=36.30  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHh-cCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHF-KGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~-~~~~~~~~~~id~~  291 (360)
                      +...+++.|....|++|.++.+.+..+-+.+ .+  ++.+...+..
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g--~v~~v~r~~p   56 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGED--NVTVRIRLQS   56 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTT--TEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCC--CEEEEEEEcC
Confidence            4566788899999999999998887776665 33  7888777754

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=88.65  E-value=0.38  Score=35.26  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=24.2

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      ++++|+++.|+.|.-...- ..+-..|.. .++.|-.+|++.+
T Consensus         1 ~V~vYtt~~c~~c~~kk~c-~~aK~lL~~-kgV~feEidI~~d   41 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQ-QDVLGFLEA-NKIGFEEKDIAAN   41 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHH-HHHHHHHHH-TTCCEEEEECTTC
T ss_pred             CEEEEecCCCCCccchHHH-HHHHHHHHH-CCCceEEEECCCC
Confidence            4678889999999421100 011111211 1688999999876

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=88.54  E-value=0.42  Score=36.92  Aligned_cols=55  Identities=11%  Similarity=0.016  Sum_probs=41.0

Q ss_pred             CCceEEEEEE-ec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          119 PIKLQVYVFA-KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       119 ~~~~~v~f~~-~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +++.++.||. .| +.|....+.+.++.++| ..+.++.|..+.....+.+++.+|+.
T Consensus        42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~   98 (163)
T 1psq_A           42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLD   98 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCT
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCC
Confidence            4566677774 78 89999999999999999 66889888877543223466777774

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=88.48  E-value=0.62  Score=36.70  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +++.+|.|| +.| +.|....+.|.++.++|+.+ +.++.|..+.....+.+++.+++.
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~  109 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT  109 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence            445667776 778 88999999999999999854 777777776543234566777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	3e-21
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	5e-20
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	6e-17
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	9e-13
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	6e-11
d2b5ea3	125	c.47.1.2 (A:240-364) Protein disulfide isomerase,	7e-11
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-10
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	7e-10
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	3e-09
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	4e-09
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	6e-09
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	9e-08
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	1e-07
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	5e-07
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-06
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-06
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	6e-06
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	7e-06
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	7e-06
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	8e-06
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	4e-05
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	5e-05
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	5e-05
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-04
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	3e-04
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	5e-04
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	8e-04
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	0.004

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 102 PLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADE 161
           PL+ ++     +   S+ I L       A++ K L + L+ IA   +G I F  +D    
Sbjct: 6   PLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAF 65

Query: 162 DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKS 221
                 L L   ++     +          F  E ++T   I+ F    + G + P +KS
Sbjct: 66  GAHAGNLNLKT-DKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKS 124

Query: 222 QPIPDN 227
           +PIP+ 
Sbjct: 125 EPIPEK 130

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.0 bits (204), Expect = 5e-20
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 219 LKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFK 278
           +KSQ I +N +++V  +VGK  D++V +  KDVL+  Y PWC  C+  +   ++LA  + 
Sbjct: 1   VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYA 60

Query: 279 GLDN-LVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
              + ++IAK+D + N+   + +E YPT++ YP G K+  +      S  ++  FIKE  
Sbjct: 61  NATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENG 120

Query: 338 KEK-DQSPKDEQWKEK 352
               D     E+ +EK
Sbjct: 121 HFDVDGKALYEEAQEK 136

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 74.1 bits (181), Expect = 6e-17
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI--D 289
           V +VV K ++++VL+  KDVL+E Y PWC  C+  + + E+L   +   +      I   
Sbjct: 4   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 63

Query: 290 ASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 340
            +       +++ +PT+  YPAG K  P+  S   + +++  FI E  K K
Sbjct: 64  DATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 114

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 4   NTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDI 63
                AE  ++  +  V+G FK  E    ++F++ A A ++I F  TSN +V        
Sbjct: 6   PDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKY---- 61

Query: 64  KSTDHFLGIVKSEPDRYTGYEETFIMDKILQFLNYNKFPLVTKLTDINS 112
           +     + + K   +    +E     + +L F+ +N+ PLV + T+  +
Sbjct: 62  QLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 56.7 bits (136), Expect = 6e-11
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            V  +    F+  VL + + VL+  +  WC  C+  S  I   A  +     +V  +ID 
Sbjct: 3   GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP 62

Query: 291 SANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           +     K +VE  P L         +       S  K + +F+   L
Sbjct: 63  NPTTVKKYKVEGVPALRLVKGEQILDST-EGVISKDK-LLSFLDTHL 107

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (137), Expect = 7e-11
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 9/116 (7%)

Query: 111 NSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLA------ 164
             A    S + L    +   ++L+       ++A+  +G + F ++D             
Sbjct: 9   VFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM 68

Query: 165 ---KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTP 217
               P   +  + E     +     +A  +   +  L    IE      L G  +P
Sbjct: 69  KEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP 124

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWC---VTCETTSKQIEKLAKHFKGLDNLVIAK 287
           +V ++    F +  L +HK +L+E Y PWC           +     K       L    
Sbjct: 8   HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 288 IDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
               ++   +  V  YPT+ F+  GD A+P + +A   + +I  ++K++ 
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 7e-10
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS---ANE 294
            TF  ++    K VL++  T +    +    + ++LA++    D+L++A++  S      
Sbjct: 12  VTFYKVI-PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKL 68

Query: 295 HPKL------QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
           + +L        E YP    +  GD  NP+  S       I  ++K Q
Sbjct: 69  NMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 51.8 bits (123), Expect = 3e-09
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
              V   TF ++VL S   VL++ + PWC  C   +  ++++A  +K     V    D S
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
            N   +  +   PT++ +  G K   I + A   +  I   +++ L
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETI-IGAVPKAT-IVQTVEKYL 106

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            +  +   +FD  VL +   +L++ +  WC  C+  +  ++++A  ++G   +    ID 
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62

Query: 291 SANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
           +    PK  +   PTLL +  G+ A    V A S  + +  F+   L
Sbjct: 63  NPGTAPKYGIRGIPTLLLFKNGEVAATK-VGALSKGQ-LKEFLDANL 107

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.2 bits (122), Expect = 6e-09
 Identities = 11/113 (9%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIE--KLAKHFKGL-DNLVIAKIDASANE 294
            +F+   +      +++             K       +K       +L+IA +      
Sbjct: 10  LSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYG 64

Query: 295 HP---------KLQVEEYPTLLFYPAGD-KANPIKVSARSSSKNIAAFIKEQL 337
                      K+  + +P++  +     +   +      +  N+ AF+    
Sbjct: 65  ELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT 117

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (113), Expect = 9e-08
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 222 QPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD 281
           Q      ++ V  +   +F++  + SH  VL E + PWC  C+  + +  K A+     +
Sbjct: 2   QEAVAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 60

Query: 282 NLVIAKIDASANE-HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
             +         +   +  +  +P+L  +   D  N I      +++ I  F+ +Q +
Sbjct: 61  ITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           VQ V   ++ + VL S   V+++ + PWC  C+  +  I++LAK + G   +     D +
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
                +  +   PT+LF+  G++   I + A   S  +   I++ L
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESI-IGAVPKST-LTDSIEKYL 104

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 238 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPK 297
             F    +   K VL++ +  WC  C   +  +E+ A+       +    +D +     +
Sbjct: 8   ANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66

Query: 298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
             +   PTL+ +  G+    + +  +   + + A + + L+
Sbjct: 67  FGIMSIPTLILFKGGEPVKQL-IGYQPKEQ-LEAQLADVLQ 105

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWC------VTCETTSKQIEKLAKHFKGLDNLV 284
            V  V  K + + V   ++ + L  + P           E     +E  A+  +    + 
Sbjct: 12  RVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVG 69

Query: 285 IAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 339
              +D+  +     KL + E  ++  +    +   I+     S+  +  F+ + L++
Sbjct: 70  FGLVDSEKDAAVAKKLGLTEEDSIYVFK---EDEVIEYDGEFSADTLVEFLLDVLED 123

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 231 NVQIVVGK-TFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIA 286
           +V ++  K  +D  +      HK ++++    WC  C+  +   E L+  + G    +  
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 287 KIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
            +DA A       +   PT   Y  G           +S   + A + +
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDG---VKADDLVGASQDKLKALVAK 108

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.0 bits (98), Expect = 6e-06
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 251 VLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFY 309
           V +EV  +P C  C    + +++  K F    ++    I     +  +  +   P +   
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 310 PAGDKANPIKVSARSSSKNIAAFIKEQLK 338
                    +     S + +   I ++++
Sbjct: 63  GVV------RFVGAPSREELFEAINDEME 85

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 233 QIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
            +  G   D  +L+   + V++     W  TC    + +  +A+  K    + +  I   
Sbjct: 6   HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 65

Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
            + +   ++ +  T++F+    K   I +   +++K   A   +Q
Sbjct: 66  PDFNKMYELYDPCTVMFFFRN-KHIMIDLGTGNNNKINWAMEDKQ 109

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 6/109 (5%)

Query: 232 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            Q V   T DD +       +LL                I +L + F    +  +A  D 
Sbjct: 13  WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADL 71

Query: 291 SANE--HPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             +E    +  V  +P  L +  G     +       ++ +   ++  +
Sbjct: 72  EQSEAIGDRFNVRRFPATLVFTDGKLRGAL-SGIHPWAE-LLTLMRSIV 118

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 8e-06
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 232 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLV-IAKID 289
              V     DD +  +    VLL                I +L + F      V IA ++
Sbjct: 19  WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE 78

Query: 290 ASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 342
            S     +  V  +P  L +  G+    +       ++ +   ++  ++ + +
Sbjct: 79  QSEAIGDRFGVFRFPATLVFTGGNYRGVL-NGIHPWAE-LINLMRGLVEPQQE 129

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 230 ANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 288
             V  V   TF  +V  +  K V+L+++T WC  C+  + + EKLA+ +  +  L +   
Sbjct: 6   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN 65

Query: 289 DASANEHPKLQVEEYPTLLFYPAGDK 314
             +     +L +   PT         
Sbjct: 66  QENKTLAKELGIRVVPTFKILKENSV 91

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 185 DNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLV 244
            ++ +S    E        E    +     +    +            ++  G+ F + +
Sbjct: 55  MSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETI 114

Query: 245 LNSHKD--VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVE 301
               K   +++ +Y      C+  +  +E LA  +     +   KI AS      +   +
Sbjct: 115 EKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRASNTGAGDRFSSD 171

Query: 302 EYPTLLFYPAGDK 314
             PTLL Y  G+ 
Sbjct: 172 VLPTLLVYKGGEL 184

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 291
           V+IV  +   D +++ ++ V+++ +  WC  C+  +   E+ +K +      +   +D  
Sbjct: 2   VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEV 60

Query: 292 ANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 335
           +    K  +   PT   Y  G   + +     ++   +   I++
Sbjct: 61  SEVTEKENITSMPTFKVYKNG---SSVDTLLGANDSALKQLIEK 101

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 232 VQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 290
            Q+      D  +   S K V+L+ +  WC  C+  S ++ +L+  F     ++   +D 
Sbjct: 8   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67

Query: 291 SANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
             +   +  +   PT +F   G     ++  A +++K +   IK  +
Sbjct: 68  CEDIAMEYNISSMPTFVFLKNG---VKVEEFAGANAKRLEDVIKANI 111

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 242 DLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVE 301
           +    S K ++++    WC  C+  +    +LAK F      +   +D       +  VE
Sbjct: 20  EKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVE 78

Query: 302 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 336
             PT +F   G     +  +  +    +   + + 
Sbjct: 79  AMPTFIFLKDG---KLVDKTVGADKDGLPTLVAKH 110

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 12/109 (11%), Positives = 32/109 (29%), Gaps = 6/109 (5%)

Query: 232 VQIVVGK-TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 289
           V+ V     F   +  +  +  +++     C  C   +     ++  +      +   + 
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF-LEVDVH 61

Query: 290 ASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 338
                     +   PT  F+        I     + +  +   IK+ L+
Sbjct: 62  QCQGTAATNNISATPTFQFFRNK---VRIDQYQGADAVGLEEKIKQHLE 107

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLF 308
           K  +    +P C  C    + +E++A        +    +  +  +  +  +   PT++ 
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 309 YPAGDKANPIKVSARSSSKNIAAFIKEQL 337
               +      + A +    +   IK++L
Sbjct: 63  NGDVE-----FIGAPTKEA-LVEAIKKRL 85

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 239 TFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH 295
           T+++ +     S   V+++    WC  C   +     LAK    +  L +   D   +  
Sbjct: 16  TWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV-DTDELKSVA 74

Query: 296 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 337
               ++  PT +F   G     +     +    + + I + L
Sbjct: 75  SDWAIQAMPTFMFLKEG---KILDKVVGAKKDELQSTIAKHL 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.94
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.89
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.88
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.87
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.87
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.87
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.86
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.85
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.84
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.83
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.83
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.79
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.79
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.78
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.76
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.75
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.75
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.75
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.74
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.73
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.7
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.69
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.69
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.67
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.65
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.65
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.64
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.61
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.61
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.6
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.58
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.52
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.51
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.5
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.5
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.49
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.49
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.47
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.46
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.45
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.37
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.36
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.35
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.35
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.28
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.27
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.22
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.18
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.18
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.15
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.15
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.13
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.12
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.11
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.04
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.03
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.02
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.02
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.0
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.99
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.99
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.97
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.94
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.91
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.9
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.88
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.86
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.8
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.77
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.76
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.74
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.63
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.58
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.52
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.5
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.44
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	98.37
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.14
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.13
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.08
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	97.85
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	97.83
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	97.74
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.63
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.59
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.51
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.5
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.48
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	97.42
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.3
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	97.3
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.27
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.17
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.08
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.99
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.97
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.94
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.89
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.81
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.73
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.69
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	96.66
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	96.63
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	96.54
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	96.47
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.45
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.4
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.33
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	96.27
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.25
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.1
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.03
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	95.94
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	95.75
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.71
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	95.61
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.53
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	95.49
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	95.44
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.43
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	95.11
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.97
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	94.96
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	94.87
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	94.8
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	94.61
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	94.39
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	94.29
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	94.11
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	94.03
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.01
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.94
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	93.0
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	92.95
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	92.89
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.51
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	92.2
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	92.18
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	92.13
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	92.05
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	89.77
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	88.4
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	88.22
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	87.11
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	87.04
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	86.42
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	86.17
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	83.73
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	82.14
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	81.53

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.8e-27  Score=184.74  Aligned_cols=123  Identities=33%  Similarity=0.599  Sum_probs=112.3

Q ss_pred             cccCCCCCCCCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCCCCCC
Q 018164          219 LKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASANEHPK  297 (360)
Q Consensus       219 ~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~~~  297 (360)
                      ++||++|+++++.|.+|+++||++.+.+.+++++|+||||||++|+.+.|.|+++|+.+++. ..+.++.+|++.+....
T Consensus         1 ~~Se~ip~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~   80 (140)
T d2b5ea1           1 VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG   80 (140)
T ss_dssp             CCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSS
T ss_pred             CCCCcCCccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccc
Confidence            48999999999999999999999999888899999999999999999999999999998643 26899999998887788


Q ss_pred             CCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          298 LQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       298 ~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      ++|.++||+++|++|+...++.|.|.++.+.|.+||++++....
T Consensus        81 ~~v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~~  124 (140)
T d2b5ea1          81 VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV  124 (140)
T ss_dssp             CCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             cccccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCCC
Confidence            99999999999999988878899999999999999999876543

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-23  Score=158.12  Aligned_cols=110  Identities=24%  Similarity=0.501  Sum_probs=99.2

Q ss_pred             CCCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          228 TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       228 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      .++.|..|+.++|++++ .++++++|.||+|||++|+.+.|.|+++++.+.+ .++.|+.|||+.+ ++. +++|.++||
T Consensus         8 ~~s~v~~lt~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPS   85 (119)
T ss_dssp             TTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCccEEcCHHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCCe
Confidence            45678999999999986 5678999999999999999999999999999965 3699999999998 654 789999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      +++|++|+...++.|.|.++.++|++||++++++
T Consensus        86 i~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          86 LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9999999888788999999999999999998763

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.89  E-value=6.6e-24  Score=159.15  Aligned_cols=111  Identities=36%  Similarity=0.715  Sum_probs=96.5

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCC---CEEEEEEeCCCCCCCCCCCCCCcE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD---NLVIAKIDASANEHPKLQVEEYPT  305 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~---~~~~~~id~~~~~~~~~~i~~~Pt  305 (360)
                      +++|+.|+++||++.+.++++++||+||+|||++|+.+.|.|+++|+.+.+..   .+.+...|+..+. ..++|.++||
T Consensus         1 ~g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~Pt   79 (116)
T d2djja1           1 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPDEIQGFPT   79 (116)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSSCCSSSSE
T ss_pred             CcCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhh-hcccccCCCE
Confidence            36799999999999998899999999999999999999999999999997643   3567777766543 2568999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +++|++|....++.|.|.++.++|++||+++...+
T Consensus        80 i~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~~k  114 (116)
T d2djja1          80 IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK  114 (116)
T ss_dssp             EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             EEEEECCccCceEEecCCCCHHHHHHHHHHccCcC
Confidence            99999998877788999999999999999988754

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-23  Score=156.42  Aligned_cols=112  Identities=27%  Similarity=0.565  Sum_probs=100.2

Q ss_pred             CCceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCC-CCC-CCCCCCCcE
Q 018164          229 NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-EHP-KLQVEEYPT  305 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~-~~~-~~~i~~~Pt  305 (360)
                      .+.|..++.++|++.+ ++++.++|.||++||++|+.+.|.|.++++.+.+. .++.++.+|++.+ .+. +++|.++||
T Consensus         6 ~~~V~~l~~~~f~~~l-~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHHH-hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            4569999999999865 67899999999999999999999999999999654 3699999999998 564 689999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +++|++|+...+..|.|.++.++|.+||++++++++
T Consensus        85 ~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~~  120 (120)
T d1meka_          85 IKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAA  120 (120)
T ss_dssp             EEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCCC
T ss_pred             EEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCCC
Confidence            999999988777899999999999999999998753

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.87  E-value=1.7e-22  Score=149.04  Aligned_cols=105  Identities=22%  Similarity=0.401  Sum_probs=95.2

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      ..|..++..+|++.+.+++++++|.||++||++|+.+.|.|++++..+.+  .+.++.+|++.+ ++. +++|+++||++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD--RLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT--TCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC--cceeceecccccHHHHHHhcccCCCEEE
Confidence            35889999999998888889999999999999999999999999999987  799999999998 654 78999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+.+  .++.|.++.+.|.+||+++++
T Consensus        80 ~~~~g~~v--~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          80 LVKGEQIL--DSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEE--EEEeCCCCHHHHHHHHHHhcC
Confidence            99988664  488999999999999999864

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.2e-22  Score=147.63  Aligned_cols=105  Identities=24%  Similarity=0.553  Sum_probs=95.0

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEE
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL  307 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~  307 (360)
                      ..|..|+.++|++.+.+++++++|.|||+||++|+.+.|.+.+++..+..  ++.++.+|++.+ .+ ..++|.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc--ceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            45889999999998888899999999999999999999999999999876  899999999988 44 378999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+.+  .++.|.++.+.|.+||++++.
T Consensus        80 ~~~~G~~v--~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          80 LFKNGEVA--ATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEETTEEE--EEEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEE--EEEeCCCCHHHHHHHHHHhcC
Confidence            99999774  479999999999999999863

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.87  E-value=2e-22  Score=147.75  Aligned_cols=102  Identities=24%  Similarity=0.557  Sum_probs=93.5

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~  309 (360)
                      |++|++++|++.+.+++++++|.|||+||++|+.+.|.+.+++..+.+  ++.++.+|++.+ ++. +++|.++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG--KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC--ccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            578999999999989999999999999999999999999999999987  789999999998 554 7999999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|+.+  .++.|.++.+.|.+||++++
T Consensus        79 ~~G~~v--~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNGERK--ESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETTEEE--EEEEECCCHHHHHHHHHHHC
T ss_pred             EcCeEE--EEEeCCCCHHHHHHHHHHhC
Confidence            998775  48899999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.86  E-value=4.1e-22  Score=146.74  Aligned_cols=103  Identities=21%  Similarity=0.497  Sum_probs=93.7

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~  309 (360)
                      +..++.++|++.+.+++++++|.|||+||++|+.+.|.+.+++..+.+  ++.++.+|++.+ ++. +++|.++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEEEEecccchhHHHHhcccceEEEEEE
Confidence            567889999999988899999999999999999999999999999987  789999999998 554 6899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++|+.+  .++.|.++.+.|.+||+++++
T Consensus        81 ~~G~~v--~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 KGGKKC--ETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             SSSSEE--EEEESCCCHHHHHHHHHHHCC
T ss_pred             ECCeEE--EEEeCCCCHHHHHHHHHHhhC
Confidence            988775  488999999999999999874

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=142.97  Aligned_cols=106  Identities=25%  Similarity=0.362  Sum_probs=100.0

Q ss_pred             ccCCHHHHHHHhhhCCeEEEEEecCCCCccHHHHHHHHhcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 018164            2 RTNTVNEAEEFLKKYQTFVLGMFKKFEGSDYEEFVKTAAADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRYT   81 (360)
Q Consensus         2 ~i~s~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~   81 (360)
                      .|+|.+++++|+++++++|||||.+.++..++.|.++|+..+++.|+++.+.+++++++++    .|+|++||++++...
T Consensus         4 ~l~~~~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~----~~~Ivl~k~~de~~~   79 (110)
T d1bjxa_           4 TLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEGRN   79 (110)
T ss_dssp             ECCSHHHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCSSSCEEEECCSHHHHHTTCS----SCEEEEEESSSSSBC
T ss_pred             EcCCHHHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCcCceEEEECCHHHHHHcCCC----CCeEEEeccCCcccc
Confidence            5889999999999999999999999999999999999965678999999999999999986    599999999998888


Q ss_pred             ccCCCCChHHHHHHHhhccCCceeecCccc
Q 018164           82 GYEETFIMDKILQFLNYNKFPLVTKLTDIN  111 (360)
Q Consensus        82 ~y~g~~~~~~l~~fi~~~~~p~v~~l~~~~  111 (360)
                      .|+|+++.++|.+||+.+++|+|+++|.+|
T Consensus        80 ~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          80 NFEGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             CCCSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             ccCCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            899999999999999999999999999876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.84  E-value=3.1e-21  Score=141.45  Aligned_cols=101  Identities=19%  Similarity=0.486  Sum_probs=91.2

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFY  309 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~  309 (360)
                      +..|+.++|++.+ +++++++|.||||||++|+.+.|.+++++..+.+  ++.|+++|++.+ ++. +++|.++||+++|
T Consensus         2 ~i~lt~~~f~~~i-~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~   78 (105)
T d1nw2a_           2 TMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLILF   78 (105)
T ss_dssp             CEEECTTTHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEEECHHHHHHHH-hCCCcEEEEEECCCCCCcccccchhhhhhhhcCC--ceEEEEEECCCCcccHHHCCcceeeEEEEE
Confidence            3578999999976 6789999999999999999999999999999987  799999999998 554 6899999999999


Q ss_pred             eCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          310 PAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       310 ~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      ++|+..  .++.|.++.+.|.++|++.+
T Consensus        79 ~~G~~~--~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          79 KGGEPV--KQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             ETTEEE--EEEESCCCHHHHHHHTTTTC
T ss_pred             ECCEEE--EEEECCCCHHHHHHHHHHHh
Confidence            999775  48899999999999998875

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.83  E-value=1.6e-20  Score=143.53  Aligned_cols=129  Identities=23%  Similarity=0.334  Sum_probs=111.1

Q ss_pred             ccCCceeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164           99 NKFPLVTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus        99 ~~~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      ..+|+|.++|.+|+..+++.+.|.+++|+....+.+++...++++|++|++++.|+++|...+.   +.++.||+.....
T Consensus         3 ~~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~---~~l~~~gl~~~~~   79 (133)
T d2djka1           3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFG---AHAGNLNLKTDKF   79 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG---GGTTTTTCCSSSS
T ss_pred             CCCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHHhH---HHHHHhcCCcccC
Confidence            3689999999999999999988877777665578899999999999999999999999998875   8899999985544


Q ss_pred             ceEEEEeCCCcccccC--CCCCCHHHHHHHHHHHhcCccCCccccCCCCCCCCC
Q 018164          179 TVVTAFDNKAISKFLL--ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNA  230 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~--~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~  230 (360)
                      |.+++.+.....+|.|  .+.++.++|.+||+++++|+++|+++||++|+++++
T Consensus        80 P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~dg  133 (133)
T d2djka1          80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG  133 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSCC
T ss_pred             CcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcccccCCCCCCCCC
Confidence            5557777776777776  456899999999999999999999999999987654

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=1.1e-20  Score=142.67  Aligned_cols=111  Identities=15%  Similarity=0.215  Sum_probs=91.1

Q ss_pred             CCCCC-CCceEEEcCccccccccccCccEEEEEeCCCChhh------HHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC
Q 018164          224 IPDNT-NANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTC------ETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH  295 (360)
Q Consensus       224 ~p~~~-~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c------~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~  295 (360)
                      .|... .+.|..|+.+||++++ .+++.++|+||+|||++|      ..+.+.++.+|+.+.+ ..+.|+.|||+.+ ++
T Consensus         4 ~p~~d~~~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~-~~v~~a~Vd~~~~~~l   81 (124)
T d1a8ya1           4 FPEYDGVDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAV   81 (124)
T ss_dssp             CCCCCCCCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG-GTEEEEEEETTTSHHH
T ss_pred             CCccCCCCccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc-CCeEEEEEEeecccch
Confidence            45443 5668999999999987 456789999999999974      4455666677777655 3699999999999 66


Q ss_pred             C-CCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcCC
Q 018164          296 P-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       296 ~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      + +++|++|||+++|++|+.   +.|.|.++.+.|.+||.+.+..
T Consensus        82 ~~~~~I~~yPTi~~f~~g~~---~~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          82 AKKLGLTEEDSIYVFKEDEV---IEYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             HHTTTCCSTTCEEEEESSSE---EECCSCCSHHHHHHHHHHHHSC
T ss_pred             hhccccccCCcEEEeccCcc---EEeeCCCCHHHHHHHHHHhcCC
Confidence            4 789999999999998854   5899999999999999998764

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=2.1e-19  Score=128.23  Aligned_cols=95  Identities=18%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHhh-hCCeEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 018164            3 TNTVNEAEEFLK-KYQTFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEPDRY   80 (360)
Q Consensus         3 i~s~~~~~~~~~-~~~~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~   80 (360)
                      |+|.++++.|++ .++++|||||++.+++.++.|.++| .+++++.||+++++++++++|++    .|+|+|||++++..
T Consensus         4 i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~d~~va~~~~v~----~~~vvlfr~fde~~   79 (102)
T d1a8ya2           4 IEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLK----LNEIDFYEAFMEEP   79 (102)
T ss_dssp             ECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCCC----TTCEEEECTTCSSE
T ss_pred             ecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEECCHHHHHHcCCC----CCCEEEeeecCCCc
Confidence            789999999998 6789999999988899999999999 78899999999999999999995    69999999999999


Q ss_pred             cccCCC-CChHHHHHHHhhccC
Q 018164           81 TGYEET-FIMDKILQFLNYNKF  101 (360)
Q Consensus        81 ~~y~g~-~~~~~l~~fi~~~~~  101 (360)
                      ..|+|. ++.++|.+||+.|..
T Consensus        80 ~~~~~~~~t~~~i~~Fi~~n~r  101 (102)
T d1a8ya2          80 VTIPDKPNSEEEIVNFVEEHRR  101 (102)
T ss_dssp             EECSSSSCCHHHHHHHHHHTCC
T ss_pred             eecCCCCCCHHHHHHHHHHhcc
Confidence            999985 899999999998753

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=1.2e-19  Score=136.30  Aligned_cols=106  Identities=10%  Similarity=0.180  Sum_probs=87.1

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcC-CCCEEEEEEeCCCCC------CC-CCCC--
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASANE------HP-KLQV--  300 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~------~~-~~~i--  300 (360)
                      .+..|+..||++++ .+++.+||.||||||++|+  .|.|.++|+.+.. ..++.++.|||+..+      +. ++++  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            46799999999998 5678999999999999999  4999999998743 347999999997642      22 4555  


Q ss_pred             CCCcEEEEEeCCCcc-CceEecCCCCHHHHHHHHHHhcCC
Q 018164          301 EEYPTLLFYPAGDKA-NPIKVSARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       301 ~~~Pti~~~~~g~~~-~~~~~~g~~~~~~l~~~i~~~~~~  339 (360)
                      .++||+++|++|... ..+.|.|.++.++|.+||+++++.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            689999999988653 234678999999999999999874

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.78  E-value=1.4e-19  Score=133.78  Aligned_cols=104  Identities=20%  Similarity=0.458  Sum_probs=89.4

Q ss_pred             CceEEE-cCcccccccc---ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCC
Q 018164          230 ANVQIV-VGKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEY  303 (360)
Q Consensus       230 ~~v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~  303 (360)
                      +.|..+ +.++|++.+.   .++++++|+||++||++|+.+.|.|+++++.+.+  ++.|+.+|++.+ ++. +++|+++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~   79 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAM   79 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBS
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc--eEEEEEeeccccccccccccccCC
Confidence            457777 4578888773   3578999999999999999999999999999986  799999999988 554 6899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ||+++|++|+.+  .++.| .+.+.|.+||++++.
T Consensus        80 Pt~~~~~~G~~v--~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 PTFHVYKDGVKA--DDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEETTEEE--EEEES-CCHHHHHHHHHHHHC
T ss_pred             CEEEEEECCEEE--EEEeC-cCHHHHHHHHHHHhC
Confidence            999999999775  47778 589999999999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.76  E-value=1.3e-18  Score=128.40  Aligned_cols=102  Identities=24%  Similarity=0.432  Sum_probs=87.9

Q ss_pred             CCceEEEcCcccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-C-CC-CCCCCCCCc
Q 018164          229 NANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EH-PKLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~-~~-~~~~i~~~P  304 (360)
                      .+.|..++.++|.+.+... +++++|.||++||++|+.+.|.|+++++.+.   ++.++.+|++. + ++ ..++|.++|
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~---~v~~~~vd~~~~~~~l~~~~~V~~~P   81 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   81 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSSS
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc---cceeecccccccchhhHhheeeccCC
Confidence            4679999999999998553 6799999999999999999999999999986   47899999975 4 55 468999999


Q ss_pred             EEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          305 TLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                      |+++|++|+.+.  ++.|. +.+.+.++|++.
T Consensus        82 t~~~~k~G~~v~--~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          82 TFKILKENSVVG--EVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEEETTEEEE--EEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEEEE--EEeCC-CHHHHHHHHHHc
Confidence            999999988753  78885 778999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=126.11  Aligned_cols=101  Identities=13%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             eEEE-cCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          232 VQIV-VGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      |+.+ +.++|++.+.+ +++.++|.||++||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. .++|.++||++
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~~l~~~~~v~~~Pt~~   79 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccchhhhhhcCceeceEEE
Confidence            5666 44789888754 36789999999999999999999999999886   488999999998 664 78999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +|++|+.+.  ++.| .+.+.|.++|++++.
T Consensus        80 ~~~~G~~v~--~~~G-~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          80 FFRNKVRID--QYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETTEEEE--EEES-SCHHHHHHHHHHHHC
T ss_pred             EEECCEEEE--EEeC-CCHHHHHHHHHHhhC
Confidence            999998764  7888 589999999999863

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.9e-18  Score=129.65  Aligned_cols=105  Identities=24%  Similarity=0.336  Sum_probs=88.2

Q ss_pred             CceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC------C---CCCC
Q 018164          230 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH------P---KLQV  300 (360)
Q Consensus       230 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~---~~~i  300 (360)
                      ..+..|+.+||++++ .+++.+||+||+|||.+|..  |.|+++|..+.+..++..+.+++...+.      .   .++|
T Consensus         4 ~~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHHHHH-hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            346779999999987 66889999999999999864  8999999999877677777776555432      2   3578


Q ss_pred             CCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          301 EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       301 ~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      .+|||+++|++|+...++.|.|.++.++|.+||+++.
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            8999999999998877899999999999999999885

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=2.5e-18  Score=127.38  Aligned_cols=104  Identities=20%  Similarity=0.386  Sum_probs=86.9

Q ss_pred             CCceEEE-cCcccccccc---ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCC
Q 018164          229 NANVQIV-VGKTFDDLVL---NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEE  302 (360)
Q Consensus       229 ~~~v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~  302 (360)
                      .+.|..+ +.++|++.+.   +++++++|.|||+||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. +++|++
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeeceeeccccceee
Confidence            3455566 5577877663   457899999999999999999999999999886   589999999998 554 789999


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      +||+++|++|+.+  -++.|. +.+.|.+||.+++.
T Consensus        82 ~Pt~~~~~~G~~v--~~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          82 MPTFMFLKEGKIL--DKVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             SSEEEEEETTEEE--EEEESC-CHHHHHHHHHHHCC
T ss_pred             eEEEEEEECCEEE--EEEeCc-CHHHHHHHHHHhhC
Confidence            9999999999775  367784 78999999999863

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.6e-18  Score=126.83  Aligned_cols=103  Identities=25%  Similarity=0.478  Sum_probs=87.1

Q ss_pred             CceEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcE
Q 018164          230 ANVQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPT  305 (360)
Q Consensus       230 ~~v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pt  305 (360)
                      +.|..+.. ++|+..+.. ++++++|.||++||++|+.+.|.|++++..+++  .+.++.+|++.+ ++ .+++|+++||
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc--ceEEEEEEeecCcchhhcCCCccccE
Confidence            34666644 678887754 467999999999999999999999999999987  799999999998 55 4789999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +++|++|+.+  -++.|. +.+.|.+||++++
T Consensus        83 ~~~~~~G~~v--~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          83 FVFLKNGVKV--EEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEEETTEEE--EEEESC-CHHHHHHHHHHTC
T ss_pred             EEEEECCEEE--EEEeCC-CHHHHHHHHHhcC
Confidence            9999999875  377785 5688999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.2e-18  Score=124.95  Aligned_cols=100  Identities=20%  Similarity=0.438  Sum_probs=83.5

Q ss_pred             eEEEcC-ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEE
Q 018164          232 VQIVVG-KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLL  307 (360)
Q Consensus       232 v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~  307 (360)
                      |+.+.. ++|++.+.. .+++++|.|||+||++|+.+.|.+.++++.+.   ++.|+.+|++.+ ++. +++|+++||++
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~~   78 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTFQ   78 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCBSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc---cceeeecccccCHhHHHHcCceEEEEEE
Confidence            345544 668887744 35789999999999999999999999999886   467999999998 554 78999999999


Q ss_pred             EEeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          308 FYPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       308 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +|++|+.+  -++.|. +.+.|.++|++.+
T Consensus        79 ~~~~G~~v--~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          79 FFKKGQKV--GEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEETTEEE--EEEESC-CHHHHHHHHHHHC
T ss_pred             EEECCEEE--EEEeCC-CHHHHHHHHHhhC
Confidence            99999875  478885 7899999999764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.74  E-value=2.3e-18  Score=127.45  Aligned_cols=103  Identities=20%  Similarity=0.431  Sum_probs=84.0

Q ss_pred             CceEEEcC-ccccccc---cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCC
Q 018164          230 ANVQIVVG-KTFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEY  303 (360)
Q Consensus       230 ~~v~~l~~-~~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~  303 (360)
                      +.|..+.. ++|++.+   ..++++++|.||++||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. +++|.++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~I~~~   80 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccccccccCeeccc
Confidence            44555544 4455443   3567899999999999999999999999999885   578999999988 554 6899999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ||+++|++|+.+.  ++.| .+.+.|.+||.++++
T Consensus        81 Pt~~~~k~G~~v~--~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          81 PTFIFLKDGKLVD--KTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             TEEEEEETTEEEE--EEEC-CCTTHHHHHHHHHHH
T ss_pred             ceEEEEECCEEEE--EEcC-CCHHHHHHHHHHHhC
Confidence            9999999997753  6667 688999999999865

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.73  E-value=3.5e-18  Score=124.35  Aligned_cols=94  Identities=19%  Similarity=0.452  Sum_probs=81.3

Q ss_pred             CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCc
Q 018164          237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~  314 (360)
                      .+.|++.+ +++++++|.||++||++|+.+.|.++++++.+.   +..|+.+|++.+ ++ .+++|.++||+++|++|+.
T Consensus         8 ~~~f~~~i-~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~   83 (103)
T d1syra_           8 QAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS   83 (103)
T ss_dssp             HHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             HHHHHHHH-hCCCcEEEEEeCCcccCcccccccchhhhhccc---ceEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence            36788876 567899999999999999999999999999986   467999999998 66 4789999999999999977


Q ss_pred             cCceEecCCCCHHHHHHHHHHhc
Q 018164          315 ANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       315 ~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      +  -++.|. +.+.|.+||++++
T Consensus        84 v--~~~~G~-~~~~l~~~i~k~a  103 (103)
T d1syra_          84 V--DTLLGA-NDSALKQLIEKYA  103 (103)
T ss_dssp             E--EEEESC-CHHHHHHHHHTTC
T ss_pred             E--EEEeCc-CHHHHHHHHHhhC
Confidence            5  378884 7899999999863

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=1.4e-17  Score=122.84  Aligned_cols=99  Identities=23%  Similarity=0.380  Sum_probs=84.0

Q ss_pred             eEEE-cCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          232 VQIV-VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      |..+ +.++|++.+ .+++.++|+|||+||++|+.+.|.|+++++.+.   ++.|+.+|++.+ ++. .++|.++||+++
T Consensus        10 vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_          10 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEEE
Confidence            5555 447788876 678899999999999999999999999999985   689999999998 664 789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+.+.  ++.|. +.+.+.++|.+.+
T Consensus        86 ~~~G~~v~--~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          86 ARSGKMLG--HVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             EETTEEEE--EEESS-CHHHHHHHHHHHH
T ss_pred             EECCEEEE--EEeCC-CHHHHHHHHHHHh
Confidence            99998853  77784 6788888888765

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.1e-17  Score=122.54  Aligned_cols=98  Identities=16%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             Cccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCC
Q 018164          237 GKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGD  313 (360)
Q Consensus       237 ~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~  313 (360)
                      ...|++.+.. .++.++|.|||+||++|+.+.|.+++++..+.+  .+.|+.||++.+ ++. .++|.++||+++|++|+
T Consensus        10 ~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~   87 (137)
T d1qgva_          10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN--FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK   87 (137)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc--cceEEEeeccccchhhhhcCeeeEEEEEEEeCCc
Confidence            4578888854 567999999999999999999999999999987  799999999999 665 68999999999999997


Q ss_pred             ccCceEe--------cC-CCCHHHHHHHHHHhc
Q 018164          314 KANPIKV--------SA-RSSSKNIAAFIKEQL  337 (360)
Q Consensus       314 ~~~~~~~--------~g-~~~~~~l~~~i~~~~  337 (360)
                      .+. ..+        .+ ..+.+++++.|+...
T Consensus        88 ~i~-~~~g~~~~~k~~~~l~~~~~~i~~ie~i~  119 (137)
T d1qgva_          88 HIM-IDLGTGNNNKINWAMEDKQEMVDIIETVY  119 (137)
T ss_dssp             EEE-EECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             EEE-EEecCCCcceeeeehhhhHHHHHHHHHHH
Confidence            752 222        11 246788888887654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=2.8e-17  Score=115.06  Aligned_cols=82  Identities=16%  Similarity=0.304  Sum_probs=72.0

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSS  325 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~  325 (360)
                      ++..+++|||+||++|+.+.|.|++++..+.+  .+.+..+|++.+ ++ .+++|.++||++++++|      .+.|.++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g------~~~G~~~   73 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEYINVMENPQKAMEYGIMAVPTIVINGDV------EFIGAPT   73 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE------ECCSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc--ccccccccccccccccccCCceEeeEEEEECCc------EEECCCC
Confidence            46788999999999999999999999999876  789999999988 55 47899999999887554      4679999


Q ss_pred             HHHHHHHHHHhc
Q 018164          326 SKNIAAFIKEQL  337 (360)
Q Consensus       326 ~~~l~~~i~~~~  337 (360)
                      .+.|.+||++++
T Consensus        74 ~~~l~~~i~~~L   85 (85)
T d1fo5a_          74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.67  E-value=4.7e-17  Score=119.23  Aligned_cols=93  Identities=19%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             ccccCccE-EEEEeCCCChhhHHHHHHHHHHHHHh--cCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCce
Q 018164          244 VLNSHKDV-LLEVYTPWCVTCETTSKQIEKLAKHF--KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPI  318 (360)
Q Consensus       244 ~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~la~~~--~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~  318 (360)
                      +.+.++++ ++.||+|||++|+.+.|.+.++|...  .....+.+..+|++.+ ++ .+++|.++||++++++|...  .
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~--~   87 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDR--V   87 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEE--E
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEE--E
Confidence            33445655 55699999999999999999998753  2333799999999988 65 47899999999999998774  5


Q ss_pred             EecCCCCHHHHHHHHHHhcC
Q 018164          319 KVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       319 ~~~g~~~~~~l~~~i~~~~~  338 (360)
                      ++.|.++.+.+.++|.+.++
T Consensus        88 ~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          88 EFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCCCHHHHHHHHHHhhC
Confidence            88999999999999998753

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=3.1e-17  Score=121.81  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             eEEEcCcccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          232 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      ...++..++++++... ++.+++.|+++||++|+.+.|.|.+|++.+.+. ++.++.+|++.+ ++. .++|+++||+++
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~-~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQF-DWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTS-CCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCC-ceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            5667888999887543 567888899999999999999999999999753 689999999988 554 799999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhc
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQL  337 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~  337 (360)
                      |++|+..  -++.|.++.+++.++|+..+
T Consensus        92 ~~~G~~v--~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLR--GALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC------CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEE--EEeeCCCCHHHHHHHHHHHh
Confidence            9988875  48899999999999999875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=1.8e-16  Score=110.64  Aligned_cols=80  Identities=16%  Similarity=0.358  Sum_probs=69.8

Q ss_pred             EEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEEEeCCCccCceEecCCCCHHH
Q 018164          251 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKN  328 (360)
Q Consensus       251 ~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~  328 (360)
                      .++.||+|||++|+.+.|.|++++..+.+  ++.++.+|++.+ ++. +++|.++||+++  .|.    .++.|.++.+.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~----~~~~G~~~~~~   75 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV----VRFVGAPSREE   75 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT----EEEECSSCCHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc--cccccccccccchhhHHhcCceEeCEEEE--CCc----EEEEcCCCHHH
Confidence            35679999999999999999999999986  799999999998 664 789999999877  332    36889999999


Q ss_pred             HHHHHHHhcC
Q 018164          329 IAAFIKEQLK  338 (360)
Q Consensus       329 l~~~i~~~~~  338 (360)
                      |.+||++++.
T Consensus        76 l~~~i~~~l~   85 (85)
T d1nhoa_          76 LFEAINDEME   85 (85)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhC
Confidence            9999999863

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=9.2e-18  Score=126.79  Aligned_cols=107  Identities=14%  Similarity=0.191  Sum_probs=93.0

Q ss_pred             eEEEcCcccccccccc-CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-CCCCCCCcEEEE
Q 018164          232 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF  308 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-~~~i~~~Pti~~  308 (360)
                      ...++.++|++++... ++.++|.||++||++|+.+.|+|.++++.+.+. .+.++.||++.+ ++. .++|.++||+++
T Consensus        19 ~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             CEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            5678889999988554 357888899999999999999999999999763 588999999998 664 789999999999


Q ss_pred             EeCCCccCceEecCCCCHHHHHHHHHHhcCCCC
Q 018164          309 YPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       309 ~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      |++|+.+  -++.|.++.+.|.++|+..+..+.
T Consensus        98 ~~~G~~v--~~~~G~~~~~~l~~~i~~ll~~~~  128 (132)
T d2hfda1          98 FTGGNYR--GVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_dssp             EETTEEE--EEECCCSCHHHHHHHHHHHHSCSS
T ss_pred             EEcCcEe--eeecCCCCHHHHHHHHHHHhCccc
Confidence            9999775  489999999999999999988654

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=4.9e-16  Score=116.26  Aligned_cols=110  Identities=16%  Similarity=0.224  Sum_probs=96.2

Q ss_pred             eeecCcccccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTA  183 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~  183 (360)
                      +++++++|+.+++..+.|.+++|+.+..+.+++...++++|++|++++.|+++|.+.+.   +.++.||+.+..|++ ++
T Consensus         2 ~gei~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~---~~l~~fgl~e~~P~~-~i   77 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFG---RHAGNLNMKEQFPLF-AI   77 (125)
T ss_dssp             SCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHT---THHHHTTCCSCSSEE-EE
T ss_pred             CCccCHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhH---HHHHHcCCCccCCcE-EE
Confidence            57899999999999999988888876677889999999999999999999999998775   889999999764665 67


Q ss_pred             EeCCCcccccCC-------------CCCCHHHHHHHHHHHhcCccCC
Q 018164          184 FDNKAISKFLLE-------------SDLTPSNIEEFCSRLLHGTLTP  217 (360)
Q Consensus       184 ~~~~~~~~y~~~-------------~~~~~~~i~~fi~~~~~g~~~~  217 (360)
                      .+..++.+|.|.             +.++.++|.+|++++++|+++|
T Consensus        78 ~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          78 HDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             EETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             EecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            777777888763             5689999999999999999987

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.61  E-value=3.9e-16  Score=115.68  Aligned_cols=98  Identities=8%  Similarity=0.230  Sum_probs=78.2

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CC----CCCCCCCCcE
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH----PKLQVEEYPT  305 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~----~~~~i~~~Pt  305 (360)
                      +..++.+.+.+.+ .++++++|+||+|||++|+.+.|.|.+++..++.  .+.++.+|...+  ..    .+++|.++||
T Consensus        11 ~~~~t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          11 LEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA--HIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             SEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC--CCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeCCHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh--hhhhheeecccccccccccccccccccccE
Confidence            5556667777765 6788999999999999999999999999999876  555554443332  11    2469999999


Q ss_pred             EEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          306 LLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       306 i~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                      +++|++|+.  ..++.|.++.++|.+||.
T Consensus        88 li~~~~gk~--~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQI--NVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEE--EEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEE--EEEEcCCCCHHHHHHHHc
Confidence            999998876  468999999999999984

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=3.3e-15  Score=111.23  Aligned_cols=107  Identities=13%  Similarity=0.057  Sum_probs=93.6

Q ss_pred             CCceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          101 FPLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .+.|.+++.++|++++..+..++|.||++| ++|+++.+.|.++|..+.+ .+.|+.|||+.+.   .+|..|+|.++ |
T Consensus         9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~---~l~~~~~v~~~-P   84 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---DLCMEHNIPGF-P   84 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---HHHHHTTCCSS-S
T ss_pred             CCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH---HHHHHhccccC-C
Confidence            356889999999999888889999999999 9999999999999999974 5999999999875   99999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++++.++.....+.|.|.++.++|.+|+++..
T Consensus        85 ti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          85 SLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             eEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            996655555555666789999999999999864

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.58  E-value=6.1e-15  Score=107.87  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=89.2

Q ss_pred             ceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      .|.++|+++|+. +.+.+.+++|.||++| ++|+.+.+.|.+++.++.+++.|+.+|++..+   .+++.|+|+++ |++
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~I~~~-Pt~   78 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP---TTVKKYKVEGV-PAL   78 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH---HHHHHTTCCSS-SEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccH---HHHHHhcccCC-CEE
Confidence            478899999987 5566778999999999 99999999999999999999999999999875   99999999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++. ++ .....+.|..+.+.|.+||+++++
T Consensus        79 ~~~~-~g-~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          79 RLVK-GE-QILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EEEE-TT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEE-CC-EEEEEEeCCCCHHHHHHHHHHhcC
Confidence            6554 33 233345789999999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.52  E-value=1.1e-14  Score=105.93  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEE
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVT  182 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~  182 (360)
                      ...+|+++|++..+++.+++|.||++| ++|+.+.+.|.+++.++++++.|+.+|++..+   .+++.|+|.++ |++++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~V~~~-Pt~~~   77 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---ETTSQFGIMSI-PTLIL   77 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---HHHHHTTCCBS-SEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCc---ccHHHCCccee-eEEEE
Confidence            357899999999988899999999999 99999999999999999999999999999886   99999999999 99965


Q ss_pred             EEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          183 AFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       183 ~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +.++.  ....+.|..+.+.|.++|++++
T Consensus        78 ~~~G~--~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          78 FKGGE--PVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EETTE--EEEEEESCCCHHHHHHHTTTTC
T ss_pred             EECCE--EEEEEECCCCHHHHHHHHHHHh
Confidence            54332  2334578899999999998765

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.51  E-value=3.2e-14  Score=103.16  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             eeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      |.++|+++|+..+ .++.++++.||++| ++|..+.+.+.+++.++.+++.++.+|++..+   .+++.|||+++ |+++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~---~l~~~~~V~~~-Pt~~   76 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP---GIATQYNIRSI-PTVL   76 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHTTCCSS-SEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccch---hhhhhcceeee-eEEE
Confidence            5689999998854 55677899999999 99999999999999999999999999999875   99999999999 9986


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++ .++ .....+.|..+.+.|.+|++++|
T Consensus        77 ~~-~~G-~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          77 FF-KNG-ERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EE-ETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EE-EcC-eEEEEEeCCCCHHHHHHHHHHhC
Confidence            55 433 22334478899999999999875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8e-15  Score=108.68  Aligned_cols=98  Identities=19%  Similarity=0.315  Sum_probs=74.8

Q ss_pred             eEEEcCccccccccc-cCccEEEEEeCC-------CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-------C-CC
Q 018164          232 VQIVVGKTFDDLVLN-SHKDVLLEVYTP-------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N-EH  295 (360)
Q Consensus       232 v~~l~~~~~~~~~~~-~~~~~~v~f~~~-------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-------~-~~  295 (360)
                      |...+.++|.+.+.+ ++++++|+|||+       ||++|+.+.|.+.++++.+++  ++.|+.+|++.       + .+
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~--~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC--ceEEEEEECCCCcccchhhhhH
Confidence            344455777777754 356899999995       999999999999999999876  79999999854       2 22


Q ss_pred             -CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHH
Q 018164          296 -PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIK  334 (360)
Q Consensus       296 -~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~  334 (360)
                       .+++|.++||+++|++|++.  ..+.+ .+.+.+..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~l--~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQKL--VESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCEE--EGGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeEE--eeeec-CCHHHHHHHhc
Confidence             25799999999999988764  23333 45666666765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.4e-14  Score=107.59  Aligned_cols=98  Identities=23%  Similarity=0.501  Sum_probs=71.8

Q ss_pred             ccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC------CCCCCCCCcEEEEEe
Q 018164          238 KTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH------PKLQVEEYPTLLFYP  310 (360)
Q Consensus       238 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pti~~~~  310 (360)
                      ++++..+.. .+++++|.|||+||++|+.+.|.+..+++......++.+..+|+..+.-      ..++|.++||+++|.
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~   90 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFD   90 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEe
Confidence            344444432 4679999999999999999999984444333222257788888877621      357999999999995


Q ss_pred             -CCCccCceEecCCCCHHHHHHHHHH
Q 018164          311 -AGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       311 -~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                       +|+.....++.|.++.+.+.++|++
T Consensus        91 ~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          91 GQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             TTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             CCCcEEecccccccCCHHHHHHHHhc
Confidence             4554433467899999999999986

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.49  E-value=3.8e-14  Score=103.34  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=87.0

Q ss_pred             eeecCccccccc-ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceE
Q 018164          104 VTKLTDINSASV-HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV  181 (360)
Q Consensus       104 v~~l~~~~~~~~-~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~  181 (360)
                      +..+|+++|++. ..++.+++|.||++| ++|..+.+.|.+++.++.+++.|+.+|++..+   .+++.|+|+++ |+++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~V~~~-Pt~~   78 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP---NVASEYGIRSI-PTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---HHHHHHTCCSS-CEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccch---hHHHHhcccce-EEEE
Confidence            456788999775 456678899999999 99999999999999999999999999999875   89999999999 9996


Q ss_pred             EEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          182 TAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       182 ~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++.++.  ...++.|..+.+.|.+||+++++
T Consensus        79 ~~~~G~--~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          79 VFKGGK--KCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EESSSS--EEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEECCe--EEEEEeCCCCHHHHHHHHHHhhC
Confidence            554332  34445788999999999999874

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=4.2e-14  Score=100.60  Aligned_cols=83  Identities=14%  Similarity=0.190  Sum_probs=67.5

Q ss_pred             cccccCc-cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceE
Q 018164          243 LVLNSHK-DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIK  319 (360)
Q Consensus       243 ~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~  319 (360)
                      .+.+-++ ..++.|+++||++|+.+.|.|+++|....   ++.+..+|++.+ ++ .+++|.++||+++  +|+.    .
T Consensus         9 ~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~----~   79 (96)
T d1hyua4           9 QIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE----F   79 (96)
T ss_dssp             HHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE----E
T ss_pred             HHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE--CCEE----E
Confidence            3333344 56778999999999999999999997653   799999999999 55 4799999999855  5543    4


Q ss_pred             ecCCCCHHHHHHHHH
Q 018164          320 VSARSSSKNIAAFIK  334 (360)
Q Consensus       320 ~~g~~~~~~l~~~i~  334 (360)
                      +.|.++.++|+++|.
T Consensus        80 ~~G~~~~~~l~~~le   94 (96)
T d1hyua4          80 GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EESCCCHHHHHHHHC
T ss_pred             EecCCCHHHHHHHHh
Confidence            789999999999874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-13  Score=100.52  Aligned_cols=104  Identities=19%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             ceeecCcccccc-cccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSAS-VHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~-~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      -|.++|.++|+. +...+.+++|.||++| ++|+.+.+.+.++|.++.+++.++.+|++..+   .++..|||.++ |++
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~-PT~   78 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYGIRGI-PTL   78 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT---THHHHTTCCSS-SEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchh---hHHHHhCCCcE-EEE
Confidence            477899999987 5566778899999999 99999999999999999999999999999876   89999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++. .+ .....+.|..+.+.|.+||+..++
T Consensus        79 ~~~~-~G-~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          79 LLFK-NG-EVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             EEEE-TT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEE-CC-EEEEEEeCCCCHHHHHHHHHHhcC
Confidence            6554 33 223345789999999999998763

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.6e-14  Score=104.74  Aligned_cols=107  Identities=18%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      +.|..++.++|++.+..+..++|.||++| ++|+.+.+.|.++++.+.+   ++.++.+||+...   .+++.++|.++ 
T Consensus         7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~-   82 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES---DLAQQYGVRGY-   82 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC---SSHHHHTCCSS-
T ss_pred             CCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch---hHHHHhCCccC-
Confidence            46888999999998888888999999999 9999999999999999864   4899999999886   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++.++.......+.|.++.++|.+||++.+.
T Consensus        83 Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             CeEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            99966655555555667899999999999998653

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.45  E-value=2.3e-13  Score=101.80  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cc------hHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCC
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DD------LKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGL  173 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~------~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi  173 (360)
                      +.|.++|++||+.++..+..++|+||++| ++      |+.+.+.+..+|+.+.+. +.|+.|||+.+.   .+|+.++|
T Consensus        11 ~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~---~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA---AVAKKLGL   87 (124)
T ss_dssp             CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSH---HHHHTTTC
T ss_pred             CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeeccc---chhhcccc
Confidence            34789999999998888878899999999 65      444555666777776554 999999999885   99999999


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++ |+++ ++.++  ....|.|.++.+.|.+|+.+.+.
T Consensus        88 ~~y-PTi~-~f~~g--~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          88 TEE-DSIY-VFKED--EVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CST-TCEE-EEESS--SEEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccC-CcEE-EeccC--ccEEeeCCCCHHHHHHHHHHhcC
Confidence            999 9985 44444  34566899999999999999874

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=3.4e-13  Score=110.59  Aligned_cols=105  Identities=19%  Similarity=0.316  Sum_probs=85.8

Q ss_pred             CCceEEEcC-ccccccccccCc--cEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCCCCCCCCc
Q 018164          229 NANVQIVVG-KTFDDLVLNSHK--DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYP  304 (360)
Q Consensus       229 ~~~v~~l~~-~~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~~~i~~~P  304 (360)
                      .+.|..++. ++|.+.+.+..+  .|+|.||+|||++|+.|.+.|..||..+.   .++|++||++.. .+..+++.++|
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~~~~~~~~i~~lP  174 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNTGAGDRFSSDVLP  174 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHHTCSTTSCGGGCS
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccchhHHhCCCCCCC
Confidence            577988964 779888855443  68999999999999999999999999885   589999998866 44688999999


Q ss_pred             EEEEEeCCCccCceEecC-------CCCHHHHHHHHHHhcC
Q 018164          305 TLLFYPAGDKANPIKVSA-------RSSSKNIAAFIKEQLK  338 (360)
Q Consensus       305 ti~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~~~~  338 (360)
                      |+++|++|..+.  .+.|       ..+.+.|..||.++--
T Consensus       175 tl~~yk~G~~v~--~~vg~~~~~g~~~~~~~lE~~L~~~g~  213 (217)
T d2trcp_         175 TLLVYKGGELIS--NFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             EEEEEETTEEEE--EETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             eEEEEECCEEEE--EEECccccccccCCHHHHHHHHHHcCC
Confidence            999999998753  3333       4577889999887644

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=1.1e-12  Score=100.42  Aligned_cols=106  Identities=13%  Similarity=0.134  Sum_probs=87.5

Q ss_pred             cCCceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC---ceEEEEEeCCCcccchhHHhhcCCC
Q 018164          100 KFPLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       100 ~~p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      ..+.|.+|+..||+.++ ..+.+++|+||++| ++|+++.+.|.++|+.|++   .+.++.+|+..     .+|+.++|+
T Consensus        10 ~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~v~   84 (140)
T d2b5ea1          10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVVIE   84 (140)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCCCS
T ss_pred             CCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhccccccc
Confidence            34679999999999976 55677899999999 9999999999999999874   47777888753     568999999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++ |+++++.++.....+.|.|.++.+.|.+||.+..
T Consensus        85 ~~-Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          85 GY-PTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             SS-SEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             cC-CeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcC
Confidence            99 9996554444455666789999999999999854

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.35  E-value=7.5e-13  Score=97.86  Aligned_cols=103  Identities=12%  Similarity=0.045  Sum_probs=82.1

Q ss_pred             CceeecCcccccccc-cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-----eEEEEEeCCCcccchhHHhhcCCC
Q 018164          102 PLVTKLTDINSASVH-SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-----IMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       102 p~v~~l~~~~~~~~~-~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-----i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +.|..++.+||++.+ ..+.+++|.||++| ++|+++.+.|.++|+.+.+.     +.+...++.      .++..++|.
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~   75 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT------ANDVPDEIQ   75 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT------TSCCSSCCS
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc------hhhhccccc
Confidence            468899999999865 67778999999999 99999999999999999853     445555544      345678999


Q ss_pred             CCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          175 ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       175 ~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++ |+++++.++.......+.|.++.++|.+||++-.
T Consensus        76 ~~-Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          76 GF-PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             SS-SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CC-CEEEEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            99 9996554444445556789999999999999844

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=4.3e-12  Score=94.36  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             CceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhc---CceEEEEEeCCCc--ccchhHHhhcCCC-
Q 018164          102 PLVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADE--DLAKPFLTLFGLE-  174 (360)
Q Consensus       102 p~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~---~~i~f~~vd~~~~--~~~~~l~~~~gi~-  174 (360)
                      |-+.+|+++||+++++....++|.||++| .+|++  +.|.++|+.+.   ..+.++.|||+..  .-++.++..|+|. 
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            34679999999999988888899999999 99994  89999998875   4699999998753  1135899999995 


Q ss_pred             -CCCCceEEEEeCCC--cccccCCCCCCHHHHHHHHHHHh
Q 018164          175 -ESKNTVVTAFDNKA--ISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       175 -~~~p~~~~~~~~~~--~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                       ++ |+++ ++..+.  ...+.+.|+++.++|.+|+++..
T Consensus        80 ~~~-PTi~-~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNF-PSIF-LFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSC-CEEE-EESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCC-CcEE-EEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence             56 9985 454433  34567789999999999999864

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.28  E-value=3.7e-12  Score=93.17  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=80.9

Q ss_pred             eeec-Cccccccccc----CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          104 VTKL-TDINSASVHS----SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       104 v~~l-~~~~~~~~~~----~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      |..+ |.++|+..+.    .+++++|.||++| ++|+.+.+.|.+++.++.+++.|+.+|++..+   .+++.|||++. 
T Consensus         4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~-   79 (112)
T d1ep7a_           4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---AVAEAAGITAM-   79 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---HHHHHHTCCBS-
T ss_pred             EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccc---cccccccccCC-
Confidence            3344 5556655443    4568899999999 99999999999999999999999999999875   99999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++. ++. ....+.| .+.+.|.+||+.+.+
T Consensus        80 Pt~~~~~-~G~-~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          80 PTFHVYK-DGV-KADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             SEEEEEE-TTE-EEEEEES-CCHHHHHHHHHHHHC
T ss_pred             CEEEEEE-CCE-EEEEEeC-cCHHHHHHHHHHHhC
Confidence            9986554 332 2333456 589999999999864

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.27  E-value=5e-12  Score=92.46  Aligned_cols=105  Identities=17%  Similarity=0.266  Sum_probs=84.1

Q ss_pred             cCCceeec-CcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          100 KFPLVTKL-TDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       100 ~~p~v~~l-~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..|.+.++ |.++|..+.+.+...++.|+++| ++|+.+.+.|.+++.++. .+.|+.+|+++.+   .+++.|||.+. 
T Consensus         6 ~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~---~l~~~~~V~~~-   80 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNS---EIVSKCRVLQL-   80 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCH---HHHHHTTCCSS-
T ss_pred             CCCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccch---hhHHHccccCC-
Confidence            45555555 77778888888888899999999 999999999999999997 5999999999876   89999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      |+++++.++....+  +.| .+.+.+.++|++++.
T Consensus        81 Pt~~~~~~G~~v~~--~~G-~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          81 PTFIIARSGKMLGH--VIG-ANPGMLRQKLRDIIK  112 (113)
T ss_dssp             SEEEEEETTEEEEE--EES-SCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEE--EeC-CCHHHHHHHHHHHhc
Confidence            99965543332223  345 467888888888763

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.22  E-value=3.6e-11  Score=87.69  Aligned_cols=104  Identities=13%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             CCceeecCcccccccccC--CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCC
Q 018164          101 FPLVTKLTDINSASVHSS--PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK  177 (360)
Q Consensus       101 ~p~v~~l~~~~~~~~~~~--~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~  177 (360)
                      ..-|.+++.++|...+..  +.+++|.||++| ++|+.+.+.|.++++++.+ +.|+.+|++...  +.+++.|||++. 
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~--~~l~~~~~V~~~-   80 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQEN--KTLAKELGIRVV-   80 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTT--HHHHHHHCCSSS-
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccc--hhhHhheeeccC-
Confidence            456889999999987643  467888999999 9999999999999999986 889999997532  389999999999 


Q ss_pred             CceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          178 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       178 p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      |+++++.++....+  +.| .+.+.+.++|+...
T Consensus        81 Pt~~~~k~G~~v~~--~~G-~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          81 PTFKILKENSVVGE--VTG-AKYDKLLEAIQAAR  111 (112)
T ss_dssp             SEEEEEETTEEEEE--EES-SCHHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEE--EeC-CCHHHHHHHHHHcc
Confidence            99965543332233  356 47789999998754

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.18  E-value=3.3e-11  Score=88.29  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             eeecCcccccccc----cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          104 VTKLTDINSASVH----SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       104 v~~l~~~~~~~~~----~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      +..-|.++|+..+    ..+.+.+|.||++| ++|+.+.+.|.++++.+.+ +.|+.+|++..+   .+++.|||++. |
T Consensus         9 i~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~---~l~~~~~V~~~-P   83 (114)
T d1xfla_           9 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELK---SVASDWAIQAM-P   83 (114)
T ss_dssp             EEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSH---HHHHHTTCCSS-S
T ss_pred             EEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeece---eeccccceeee-E
Confidence            3344666665543    34667888999999 9999999999999999986 899999999886   99999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      +++++.++.  ....+.| .+.+.|.+||+.+++
T Consensus        84 t~~~~~~G~--~v~~~~G-~~~~~l~~~i~k~la  114 (114)
T d1xfla_          84 TFMFLKEGK--ILDKVVG-AKKDELQSTIAKHLA  114 (114)
T ss_dssp             EEEEEETTE--EEEEEES-CCHHHHHHHHHHHCC
T ss_pred             EEEEEECCE--EEEEEeC-cCHHHHHHHHHHhhC
Confidence            986554332  2333456 588999999999874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.18  E-value=1.5e-11  Score=88.50  Aligned_cols=96  Identities=13%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEe
Q 018164          107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD  185 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~  185 (360)
                      -|.+.|..+++.+.++++.||++| ++|+.+.+.+.++++++.+ +.|+.+|++..+   ++++.|||.+. |+++++.+
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~---~~~~~~~V~~~-Pt~i~~k~   80 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVS---EVTEKENITSM-PTFKVYKN   80 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTH---HHHHHTTCCSS-SEEEEEET
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCc---ceeeeeeeecc-eEEEEEEC
Confidence            355667777777778889999999 9999999999999999976 789999999875   89999999999 99865554


Q ss_pred             CCCcccccCCCCCCHHHHHHHHHHH
Q 018164          186 NKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       186 ~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +....++  .| .+.+.|.+||+.+
T Consensus        81 G~~v~~~--~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          81 GSSVDTL--LG-ANDSALKQLIEKY  102 (103)
T ss_dssp             TEEEEEE--ES-CCHHHHHHHHHTT
T ss_pred             CEEEEEE--eC-cCHHHHHHHHHhh
Confidence            3323333  56 5788999999865

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.1e-11  Score=86.05  Aligned_cols=96  Identities=10%  Similarity=0.042  Sum_probs=77.1

Q ss_pred             Cccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          108 TDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       108 ~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      |.++|+..+.  .+...++.||++| ++|+.+.+.|.++|+++.+ +.|+.+|++..+   .+++.+||... |+++++.
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~---~l~~~~~v~~~-Pt~~~~~   82 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQ---GTAATNNISAT-PTFQFFR   82 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSH---HHHHHTTCCSS-SEEEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccch---hhhhhcCceec-eEEEEEE
Confidence            5667776553  2456778899999 9999999999999999986 899999999875   99999999999 9996554


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++..  ...+.| .+.+.|.++|+.++
T Consensus        83 ~G~~--v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          83 NKVR--IDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             TTEE--EEEEES-SCHHHHHHHHHHHH
T ss_pred             CCEE--EEEEeC-CCHHHHHHHHHHhh
Confidence            4332  233456 58999999999886

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.15  E-value=7.5e-11  Score=85.40  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=77.9

Q ss_pred             cCcccccccccCCCceEE-EEEEec-cchHHHHHHHHHHHHh----hcCceEEEEEeCCCcccchhHHhhcCCCCCCCce
Q 018164          107 LTDINSASVHSSPIKLQV-YVFAKA-DDLKSLLEPLEDIARN----FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v-~f~~~~-~~~~~~~~~~~~la~~----~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~  180 (360)
                      |++++.+.+.....+..+ .|+++| ++|+.+.+.+.++|.+    +.+++.+..+|++.++   ++++.|||.+. |++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~---~l~~~~~V~~v-PTi   77 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP---EWADQYNVMAV-PKI   77 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH---HHHHHTTCCSS-CEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc---ccccccccccc-eEE
Confidence            566666666666666554 589999 9999999999999865    4467999999999876   99999999999 998


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ++ +..+ .....+.|..+.+.+.+|+.+.++
T Consensus        78 ~i-~~~G-~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          78 VI-QVNG-EDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             EE-EETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EE-EeCC-eEEEEEECCCCHHHHHHHHHHhhC
Confidence            54 4333 233445799999999999998763

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=8e-12  Score=92.87  Aligned_cols=100  Identities=9%  Similarity=-0.021  Sum_probs=76.9

Q ss_pred             eeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-------ceEEEEEeCCCcccchhHHhhcC--C
Q 018164          104 VTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-------KIMFTAVDIADEDLAKPFLTLFG--L  173 (360)
Q Consensus       104 v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-------~i~f~~vd~~~~~~~~~l~~~~g--i  173 (360)
                      +.+||.+||+++++.+..++|.||.+| ..|.  .+.|+++|+.+.+       +|.++.+||+.+.   .+|..++  |
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~---~l~~~~~~~I   80 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNM---ELSEKYKLDK   80 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHH---HHHHHHTCSS
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccH---HHHHhhcccc
Confidence            568999999999988888999999999 5553  4788888888874       3455555776553   8888876  5


Q ss_pred             CCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          174 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       174 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      .++ |++.++.+++......|.|.++.++|.+||++
T Consensus        81 ~~y-PTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          81 ESY-PVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             SSC-EEEEEEESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             cCC-CeEEEEecCcccCceecCCCCCHHHHHHHHHh
Confidence            588 99965554443444556899999999999987

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.7e-11  Score=84.97  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=75.7

Q ss_pred             Cccccccccc--CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEE
Q 018164          108 TDINSASVHS--SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF  184 (360)
Q Consensus       108 ~~~~~~~~~~--~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~  184 (360)
                      +.++|+..+.  .+++.++.||++| ++|+.+.+.|.++++++.+ +.|+.+|++..+   .+++.+||++. |+++++.
T Consensus         7 s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~---~~~~~~~V~~~-Pt~~~~~   81 (105)
T d2ifqa1           7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQ---DVASECEVKCM-PTFQFFK   81 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCH---HHHHHTTCCBS-SEEEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCH---hHHHHcCceEE-EEEEEEE
Confidence            4455666553  3456788899999 9999999999999999976 679999999886   89999999999 9996554


Q ss_pred             eCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          185 DNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       185 ~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      ++....+  +.| .+.+.|.++|++++
T Consensus        82 ~G~~v~~--~~G-~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          82 KGQKVGE--FSG-ANKEKLEATINELV  105 (105)
T ss_dssp             TTEEEEE--EES-CCHHHHHHHHHHHC
T ss_pred             CCEEEEE--EeC-CCHHHHHHHHHhhC
Confidence            4332333  356 57899999999864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=9.7e-11  Score=85.36  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             ceeec-Ccccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          103 LVTKL-TDINSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       103 ~v~~l-~~~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      .|.++ +.++++..+  ..+++++|.||++| ++|+.+.+.|.+++.++++.+.++.+|++..+   .+++.|||... |
T Consensus         6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~---~l~~~~~V~~~-P   81 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE---DIAMEYNISSM-P   81 (111)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---HHHHHTTCCSS-S
T ss_pred             eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCc---chhhcCCCccc-c
Confidence            44445 445676544  34567888899999 99999999999999999999999999999875   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                      +++++.++..  ...+.| .+.+.|.+||++.
T Consensus        82 t~~~~~~G~~--v~~~~G-~~~~~l~~~I~~~  110 (111)
T d1xwaa_          82 TFVFLKNGVK--VEEFAG-ANAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEEETTEE--EEEEES-CCHHHHHHHHHHT
T ss_pred             EEEEEECCEE--EEEEeC-CCHHHHHHHHHhc
Confidence            9865543322  233455 4668899999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.11  E-value=6.6e-11  Score=86.53  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             cccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCccc
Q 018164          113 ASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISK  191 (360)
Q Consensus       113 ~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~  191 (360)
                      ......+.+++|.||++| ++|+.+.+.|.++++++.+ +.|+.+|++..+   .+++.|||++. |+++++. ++. ..
T Consensus        20 ~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~---~l~~~~~I~~~-Pt~~~~k-~G~-~v   92 (113)
T d1ti3a_          20 EKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELK---AVAEEWNVEAM-PTFIFLK-DGK-LV   92 (113)
T ss_dssp             HHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCH---HHHHHHHCSST-TEEEEEE-TTE-EE
T ss_pred             HHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccc---cccccCeeccc-ceEEEEE-CCE-EE
Confidence            334456678889999999 9999999999999999976 899999999875   89999999999 9996554 332 22


Q ss_pred             ccCCCCCCHHHHHHHHHHHhc
Q 018164          192 FLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       192 y~~~~~~~~~~i~~fi~~~~~  212 (360)
                      ..+.| .+.+.|.+||.++.+
T Consensus        93 ~~~~G-~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          93 DKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEC-CCTTHHHHHHHHHHH
T ss_pred             EEEcC-CCHHHHHHHHHHHhC
Confidence            22345 688999999998853

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.04  E-value=2e-10  Score=79.26  Aligned_cols=80  Identities=13%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCH
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP  200 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~  200 (360)
                      .+.+||++| ++|+++.+.|+++++++.+++.|+.+|++...   .+++.|||.+. |+++ + + +. .++  .|..+.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~---~l~~~~~V~~~-Pt~~-~-~-~~-~~~--~G~~~~   73 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR---EKAIEYGLMAV-PAIA-I-N-GV-VRF--VGAPSR   73 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG---GGGGGTCSSCS-SEEE-E-T-TT-EEE--ECSSCC
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccch---hhHHhcCceEe-CEEE-E-C-Cc-EEE--EcCCCH
Confidence            356799999 99999999999999999999999999999875   99999999999 9974 3 2 22 233  688999


Q ss_pred             HHHHHHHHHHh
Q 018164          201 SNIEEFCSRLL  211 (360)
Q Consensus       201 ~~i~~fi~~~~  211 (360)
                      +.|.+||++.+
T Consensus        74 ~~l~~~i~~~l   84 (85)
T d1nhoa_          74 EELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=5.8e-10  Score=84.13  Aligned_cols=99  Identities=16%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--C---------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--E---------------  294 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~---------------  294 (360)
                      +..++|+++.--- -..++++|.||++||++|+...|.+.++++.+++   +.+..+.....  .               
T Consensus        10 ~~~~~G~~~~l~~-~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~---~~~v~v~~~d~~~~~~~~~~~~~~~~~~~   85 (134)
T d1zzoa1          10 AKTLDGHDFHGES-LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQ   85 (134)
T ss_dssp             EEBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT---SEEEEEECSSCHHHHHHHHHHTTCTTSEE
T ss_pred             EEcCCCCEEeHHH-hCCCEEEEEecccccCcccccchhhHHHHhhhcc---cccccccccccchhHHHHHHhcCCcceeE
Confidence            4445554433221 1478999999999999999999999999999865   33333432211  0               


Q ss_pred             -------C-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          295 -------H-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       295 -------~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                             + ..+++.++|+++++.+++++.  .+.|..+.++|.+.|++.
T Consensus        86 l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~--~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          86 LADTDGSVWANFGVTQQPAYAFVDPHGNVD--VVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECTTCCEE--EEESCCCHHHHHHHHHHH
T ss_pred             EeeccchHHHhcCCCccCeEEEECCCCeEE--EEECCCCHHHHHHHHHhh
Confidence                   0 123788999999996665542  457899999999999875

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.8e-10  Score=87.26  Aligned_cols=96  Identities=18%  Similarity=0.297  Sum_probs=66.2

Q ss_pred             CccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------------
Q 018164          237 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------------  293 (360)
Q Consensus       237 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------  293 (360)
                      ++.+..-.+.+.++++|.|||+||++|+...|.+.+++..     ++.+..++.+..                       
T Consensus         9 g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   83 (136)
T d1z5ye1           9 GQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD   83 (136)
T ss_dssp             TCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESS
T ss_pred             CcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccceeecccc
Confidence            3444444445688999999999999999999999998753     222332332221                       


Q ss_pred             -CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          294 -EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       294 -~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                       .+ ..+++.++|+.+++..++++ ..++.|..+.+.+.+.|++.+.
T Consensus        84 ~~~~~~~~v~~~P~~~liD~~G~i-~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          84 GMLGLDLGVYGAPETFLIDGNGII-RYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             CHHHHHHTCCSBSEEEEECTTSCE-EEEEESCCCHHHHHHHTHHHHH
T ss_pred             hhHHHhcccCCcceEEEEcCCCEE-EEEEEcCCCHHHHHHHHHHHHH
Confidence             11 12478899999999665554 3467899999888887776654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.02  E-value=2.1e-10  Score=79.14  Aligned_cols=82  Identities=10%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             CceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCC
Q 018164          120 IKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL  198 (360)
Q Consensus       120 ~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~  198 (360)
                      +..+++||++| ++|+.+.+.|.+++..+.+.+.+..+|++.++   ++++.|||.++ |+++ +...  + +  +.|..
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~---~la~~~~V~~~-Pt~~-i~~~--g-~--~~G~~   72 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYGIMAV-PTIV-INGD--V-E--FIGAP   72 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTTTCCS-SEEE-ETTE--E-E--CCSSS
T ss_pred             ceEEEEEECCCCcChHhhhhhccccccccccccccccccccccc---cccccCCceEe-eEEE-EECC--c-E--EECCC
Confidence            45678899999 99999999999999999999999999999876   89999999999 9984 4322  2 2  35888


Q ss_pred             CHHHHHHHHHHHh
Q 018164          199 TPSNIEEFCSRLL  211 (360)
Q Consensus       199 ~~~~i~~fi~~~~  211 (360)
                      +.+.|.+||++++
T Consensus        73 ~~~~l~~~i~~~L   85 (85)
T d1fo5a_          73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.2e-10  Score=86.62  Aligned_cols=70  Identities=14%  Similarity=0.322  Sum_probs=52.9

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC--CCCCCCcEEEEEeC-CCc
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK--LQVEEYPTLLFYPA-GDK  314 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~--~~i~~~Pti~~~~~-g~~  314 (360)
                      ..++++++|.||++||++|+.+.+.+.+..+......++..+.+|++.. ....  ....++|+++++.. |..
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~   95 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV   95 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeE
Confidence            3458999999999999999999999876665433223789999998877 4443  25557899999954 444

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.99  E-value=1.1e-09  Score=83.55  Aligned_cols=102  Identities=17%  Similarity=0.273  Sum_probs=72.7

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-----------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------  294 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----------------  294 (360)
                      ++.++++...-. .-.+++++|.|||+||++|+...|.+.++.+.++.. ++.+..+......                 
T Consensus         8 l~~~~~~~~~l~-~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~   85 (143)
T d2fy6a1           8 LKTADNRPASVY-LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNY   85 (143)
T ss_dssp             CEETTSCBGGGG-CCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             eECCCCCEeeHH-HhCCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCC
Confidence            344444443332 245789999999999999999999999999988753 4555555533210                 


Q ss_pred             --C-----------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHh
Q 018164          295 --H-----------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ  336 (360)
Q Consensus       295 --~-----------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~  336 (360)
                        .           ..+++.++|+++++.+.+++ ..++.|..+.+.+.++|++.
T Consensus        86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i-~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDV-QRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCE-EEEEESCCCHHHHHHHHHCT
T ss_pred             cccccccccchHHHHHcCCCccCEEEEECCCCEE-EEEEECCCCHHHHHHHHHHH
Confidence              0           12367899999999655554 34678999999999999865

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=1.5e-10  Score=85.10  Aligned_cols=103  Identities=7%  Similarity=0.010  Sum_probs=71.7

Q ss_pred             ceeecCcccccccccCCC--ceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          103 LVTKLTDINSASVHSSPI--KLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~--~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      -+..++..+++.+.....  .+++.|+++| ++|+.+.+.|.+++++|.+ ++.++.||++..+   .+++.|||+.. |
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~---~l~~~~~V~~~-P   87 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE---AIGDRFNVRRF-P   87 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHH---HHHHTTTCCSS-S
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCH---HHHHhcCcCcc-e
Confidence            455678888887765543  3344466788 9999999999999999987 6999999999775   89999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +++++.++.  ....+.|..+.+.+.++++..+
T Consensus        88 t~~~~~~G~--~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          88 ATLVFTDGK--LRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EEEEESCC------CEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEEcCe--EEEEeeCCCCHHHHHHHHHHHh
Confidence            996554333  3334478899999999999876

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.97  E-value=6e-10  Score=81.56  Aligned_cols=102  Identities=12%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             ceeecCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc-ccchhHHhhcCCCCCCCce
Q 018164          103 LVTKLTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESKNTV  180 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~gi~~~~p~~  180 (360)
                      .+...|.+.+...+..+.+.+++||++| ++|+.+.|.|.+++++++.++.++.++.... ...+++++.+||.+. |++
T Consensus        10 ~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~-PTl   88 (115)
T d1zmaa1          10 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTV-PGF   88 (115)
T ss_dssp             TSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSS-CEE
T ss_pred             eeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccc-cEE
Confidence            3556777778888888888999999999 9999999999999999998887776654422 111367889999999 999


Q ss_pred             EEEEeCCCcccccCCCCCCHHHHHHHH
Q 018164          181 VTAFDNKAISKFLLESDLTPSNIEEFC  207 (360)
Q Consensus       181 ~~~~~~~~~~~y~~~~~~~~~~i~~fi  207 (360)
                      +++. ++. ...++.|..+.+.|.+|+
T Consensus        89 i~~~-~gk-~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          89 VHIT-DGQ-INVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEEE-TTE-EEEECCTTCCHHHHHHHH
T ss_pred             EEEE-CCE-EEEEEcCCCCHHHHHHHH
Confidence            6554 332 344458999999999997

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.4e-10  Score=86.75  Aligned_cols=106  Identities=8%  Similarity=0.032  Sum_probs=83.4

Q ss_pred             ceeecCcccccccccCCC--ceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcccchhHHhhcCCCCCCC
Q 018164          103 LVTKLTDINSASVHSSPI--KLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKN  178 (360)
Q Consensus       103 ~v~~l~~~~~~~~~~~~~--~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~gi~~~~p  178 (360)
                      -+..++..+++.+.....  ++++.|+++| ++|..+.+.|.+++++|.+. +.++.||++.+.   .+++.|||.+. |
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~---~la~~~~V~~~-P   93 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFGVFRF-P   93 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHH---HHHHHHTCCSC-C
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCH---HHHHhhccCcc-e
Confidence            455677788887654433  3444577889 99999999999999999986 788999999775   99999999999 9


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhcCc
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGT  214 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~  214 (360)
                      +++++.++.  ....+.|..+.+.+.++++.++.+.
T Consensus        94 T~~~~~~G~--~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          94 ATLVFTGGN--YRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EEEEEETTE--EEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             eEEEEEcCc--EeeeecCCCCHHHHHHHHHHHhCcc
Confidence            996554332  2334589999999999999988653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.4e-09  Score=80.32  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=73.6

Q ss_pred             ccccccc--cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeC
Q 018164          110 INSASVH--SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN  186 (360)
Q Consensus       110 ~~~~~~~--~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~  186 (360)
                      ..++..+  ..+++++|.|+++| ++|+++.+.|.++|.++.+++.|+.||++..+   .+++.|+|.+. |+++.+. .
T Consensus        11 ~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~---~la~~~~I~~~-PT~~~f~-~   85 (137)
T d1qgva_          11 WQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP---DFNKMYELYDP-CTVMFFF-R   85 (137)
T ss_dssp             HHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC---TTTTSSCSCSS-CEEEEEE-T
T ss_pred             HHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccc---hhhhhcCeeeE-EEEEEEe-C
Confidence            3454433  23457788899999 99999999999999999999999999999886   99999999999 9996554 3


Q ss_pred             CCcccc--------cCCCC-CCHHHHHHHHHHHhc
Q 018164          187 KAISKF--------LLESD-LTPSNIEEFCSRLLH  212 (360)
Q Consensus       187 ~~~~~y--------~~~~~-~~~~~i~~fi~~~~~  212 (360)
                      ++....        ++.+. .+.+.+.+.++....
T Consensus        86 g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          86 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             TEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            322221        12222 367788888887653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=2.1e-08  Score=76.19  Aligned_cols=99  Identities=12%  Similarity=0.242  Sum_probs=70.8

Q ss_pred             EEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----C---C----------
Q 018164          233 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----E---H----------  295 (360)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----~---~----------  295 (360)
                      ..++++....- ...+++++|+||++||++|+...|.+.++.+.+++  ++.+..++....    +   +          
T Consensus        15 ~~~ng~~~~~~-~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (143)
T d2b5xa1          15 AWLNGEVTREQ-LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (143)
T ss_dssp             EEESCCCCHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             cCcCCeEecHH-HhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhccC
Confidence            33455433322 24578999999999999999999999999999986  566666654321    0   0          


Q ss_pred             ------------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          296 ------------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       296 ------------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                                  ..+++.++|+++++...+.+ ..++.|..+.+.|.+.|++
T Consensus        92 ~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i-~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          92 QPIFVDSDHALTDAFENEYVPAYYVFDKTGQL-RHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSEEEEECTTCBE-EEEEESCSTTHHHHHHHHH
T ss_pred             ccccccCccchHHHcCCCcCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHh
Confidence                        02367789999999555454 3467799999999888875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=2.3e-09  Score=80.69  Aligned_cols=100  Identities=20%  Similarity=0.392  Sum_probs=70.7

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CC--------------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH--------------  295 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~--------------  295 (360)
                      +..++|+.+.--- -..++++|.||++||++|....|.+.+++..++   ++.+..++.+.+  .+              
T Consensus         9 ~~~~~G~~~~l~~-~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~   84 (134)
T d1lu4a_           9 ATTLSGAPFDGAS-LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNL   84 (134)
T ss_dssp             EEBTTSCEEEGGG-GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEE
T ss_pred             eECCCCCEEcHHH-hCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhhcccccee
Confidence            3445555554321 247899999999999999999999999998775   466676765532  11              


Q ss_pred             --------CCCCCCCCcEEEEEeCCCccCce-EecCCCCHHHHHHHHHH
Q 018164          296 --------PKLQVEEYPTLLFYPAGDKANPI-KVSARSSSKNIAAFIKE  335 (360)
Q Consensus       296 --------~~~~i~~~Pti~~~~~g~~~~~~-~~~g~~~~~~l~~~i~~  335 (360)
                              ..+++.++|+++++..++++..+ ...|..+.++|.+.|.+
T Consensus        85 ~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          85 NDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             ECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             eCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence                    12478899999999665554211 23477899999988865

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.88  E-value=1.6e-09  Score=82.73  Aligned_cols=89  Identities=18%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC----------------------CCCC-CCCCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS----------------------ANEH-PKLQVEEY  303 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~----------------------~~~~-~~~~i~~~  303 (360)
                      ++++++|.||++||++|+...|.+.++.+.++.  .+..+.++-.                      .+.+ ..+++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF--QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS--EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc--eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            468999999999999999999999988765532  2222222111                      1111 23578999


Q ss_pred             cEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          304 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       304 Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                      |+++++...+++ ..++.|..+.+.+.+.|.+.++
T Consensus       108 P~~~liD~~G~i-~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_         108 PETFVVGREGTI-VYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             CEEEEECTTSBE-EEEEESCCCHHHHHHTHHHHHH
T ss_pred             ceEEEEcCCCeE-EEEEeCCCCHHHHHHHHHHHHH
Confidence            999999655554 3467899999999998887654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.5e-09  Score=82.77  Aligned_cols=97  Identities=10%  Similarity=0.218  Sum_probs=72.8

Q ss_pred             cccccc---cccCccEEEEEeCCCChhhHHHHHHH---HHHHHHhcCCCCEEEEEEeCCCCCC----CCCCCCCCcEEEE
Q 018164          239 TFDDLV---LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLF  308 (360)
Q Consensus       239 ~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pti~~  308 (360)
                      +|++.+   ...+|++||+|+++||..|+.|....   .++.+.++.  ++.+..+|.+..+.    ..+++.++|++++
T Consensus        30 ~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~--~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~  107 (147)
T d2dlxa1          30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSI  107 (147)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEE
T ss_pred             CHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh--heeEeeecccchhhhhhhhheecCceeEEEE
Confidence            444443   45589999999999999999997644   566666765  78999999876533    3579999999999


Q ss_pred             Ee-C-CCccCceEecCCCCHHHHHHHHHHhcCCC
Q 018164          309 YP-A-GDKANPIKVSARSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       309 ~~-~-g~~~~~~~~~g~~~~~~l~~~i~~~~~~~  340 (360)
                      +. . |+.   ++..|.++.+.++..|++.+..+
T Consensus       108 idp~~ge~---v~~~~~~~~~~fl~~L~~fl~~~  138 (147)
T d2dlxa1         108 LDPRTGQK---LVEWHQLDVSSFLDQVTGFLGEH  138 (147)
T ss_dssp             ECTTTCCC---CEEESSCCHHHHHHHHHHHHHHT
T ss_pred             EeCCCCeE---ecccCCCCHHHHHHHHHHHHhhC
Confidence            95 3 443   35557789999888888777643

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=1e-08  Score=77.30  Aligned_cols=87  Identities=20%  Similarity=0.372  Sum_probs=67.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CC----------------------CCCCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH----------------------PKLQVEE  302 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~----------------------~~~~i~~  302 (360)
                      .+++++|.||++||++|....+.+.++.+.+... ++.+..++.+.+  .+                      ..+++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc
Confidence            4678999999999999999999999999999764 677777765432  11                      1237789


Q ss_pred             CcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          303 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                      +|+++++..++++ ..++.|..+.+.+.++|+.
T Consensus       103 ~P~~~liD~~G~i-~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKV-VKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEE-EEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEE-EEEEECCCCHHHHHHHHHh
Confidence            9999999776665 3567799999888887753

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.77  E-value=9.6e-09  Score=78.10  Aligned_cols=65  Identities=20%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--C------------------------CCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H------------------------PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~------------------------~~~~i  300 (360)
                      ..+.++|.|||+||++|+...|.+.++.+.+++..++.++.+..+.+.  .                        ..+++
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            478999999999999999999999999999977557888888766541  0                        02478


Q ss_pred             CCCcEEEEEeC
Q 018164          301 EEYPTLLFYPA  311 (360)
Q Consensus       301 ~~~Pti~~~~~  311 (360)
                      .++|+++++.+
T Consensus       107 ~~iPt~~lid~  117 (144)
T d1i5ga_         107 KSIPTLVGVEA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCcCEEEEEeC
Confidence            89999999975

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.2e-09  Score=76.00  Aligned_cols=85  Identities=14%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             cccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecC
Q 018164          245 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA  322 (360)
Q Consensus       245 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g  322 (360)
                      .++.-+++++|+++||+.|..+.+.+++++..+.    ..+..+|.+.+ ++ .++++. +|++++  +|+.    ...|
T Consensus        12 ~~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~----~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~----~~~g   80 (100)
T d1wjka_          12 SNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPENSTWYERYKFD-IPVFHL--NGQF----LMMH   80 (100)
T ss_dssp             SCCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE----EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSE----EEES
T ss_pred             cCCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc----eEEEecccccCHHHHHHhccc-CCceee--cCce----EEeC
Confidence            3456689999999999999999999999876553    56777777777 44 367776 897754  5644    3568


Q ss_pred             CCCHHHHHHHHHHhcCCC
Q 018164          323 RSSSKNIAAFIKEQLKEK  340 (360)
Q Consensus       323 ~~~~~~l~~~i~~~~~~~  340 (360)
                      ..+.+.|.++|.+..+..
T Consensus        81 ~~d~~~L~~~L~~l~~~~   98 (100)
T d1wjka_          81 RVNTSKLEKQLRKLSGPS   98 (100)
T ss_dssp             SCCHHHHHHHHHSSSCSS
T ss_pred             CCCHHHHHHHHHHHhcCC
Confidence            999999999999876643

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.74  E-value=2.6e-08  Score=69.88  Aligned_cols=76  Identities=14%  Similarity=0.054  Sum_probs=62.9

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCH
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP  200 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~  200 (360)
                      .+++|+++| ++|+.+.+.|.++|..+. ++.|..+|++.++   ++++.|||++. |+++ + ++.    ..+.|..+.
T Consensus        18 ~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~---~l~~~~~I~~v-Pt~~-~-ng~----~~~~G~~~~   86 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQ---NEITERNVMGV-PAVF-V-NGK----EFGQGRMTL   86 (96)
T ss_dssp             EEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCH---HHHHHTTCCSS-SEEE-E-TTE----EEEESCCCH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccch---HHHhhcccccc-cEEE-E-CCE----EEEecCCCH
Confidence            466788999 999999999999998876 4999999999886   99999999999 9974 3 221    223688999


Q ss_pred             HHHHHHHH
Q 018164          201 SNIEEFCS  208 (360)
Q Consensus       201 ~~i~~fi~  208 (360)
                      +.|.++++
T Consensus        87 ~~l~~~le   94 (96)
T d1hyua4          87 TEIVAKVD   94 (96)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99988874

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.63  E-value=3.6e-08  Score=74.94  Aligned_cols=65  Identities=23%  Similarity=0.374  Sum_probs=52.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-C----C--------------------CCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-H----P--------------------KLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-~----~--------------------~~~i  300 (360)
                      ..++++|.|||+||++|+...|.+.++.+++....++.+..+..+.. + .    .                    .+++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            47899999999999999999999999999996655788888876543 1 1    0                    1267


Q ss_pred             CCCcEEEEEeC
Q 018164          301 EEYPTLLFYPA  311 (360)
Q Consensus       301 ~~~Pti~~~~~  311 (360)
                      .++|+++++..
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            89999999975

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.1e-08  Score=72.39  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=66.7

Q ss_pred             cCccccccccc--CCCceEEEEEEe-------c-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc----cchhHHhhcC
Q 018164          107 LTDINSASVHS--SPIKLQVYVFAK-------A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----LAKPFLTLFG  172 (360)
Q Consensus       107 l~~~~~~~~~~--~~~~~~v~f~~~-------~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~----~~~~l~~~~g  172 (360)
                      .+.+.|.+.+.  .+++++|.|+++       | ++|+.+.|.+.++++.+.+++.|+.||++..+    -+..+++.||
T Consensus         7 ~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~   86 (119)
T d1woua_           7 SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK   86 (119)
T ss_dssp             ESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC
T ss_pred             CCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC
Confidence            34444554443  345677888884       9 99999999999999999999999999985321    0136889999


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHH
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS  208 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~  208 (360)
                      |.+. |+++ ++.+++ +..... ..+.+.|..|++
T Consensus        87 V~~i-PT~i-~~~~g~-~l~~~~-~~~~~ll~~~~~  118 (119)
T d1woua_          87 VTAV-PTLL-KYGTPQ-KLVESE-CLQANLVEMLFS  118 (119)
T ss_dssp             CCSS-SEEE-ETTSSC-EEEGGG-GGCHHHHHHHHH
T ss_pred             eEEE-EEEE-EEECCe-EEeeee-cCCHHHHHHHhc
Confidence            9999 9995 443332 111111 145666766764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.52  E-value=4e-07  Score=71.45  Aligned_cols=104  Identities=15%  Similarity=0.272  Sum_probs=70.0

Q ss_pred             eEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC---CC----C-------
Q 018164          232 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP----K-------  297 (360)
Q Consensus       232 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---~~----~-------  297 (360)
                      +..++++.+.-- .-..++++|+||++||++|....+.+.++...+... ++.+..+.++...   +.    +       
T Consensus        41 l~d~~G~~v~L~-~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~  118 (176)
T d1jfua_          41 FEDADGKPKKLS-DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTRLG  118 (176)
T ss_dssp             EECTTSCEEEGG-GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTC
T ss_pred             EECCCcCEEeHH-HhCCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCccee
Confidence            344445444321 124689999999999999999999999999988653 5555555544221   10    0       


Q ss_pred             ----------------CCCCCCcEEEEEeCCCccCceEecCC--CCHHHHHHHHHHhcC
Q 018164          298 ----------------LQVEEYPTLLFYPAGDKANPIKVSAR--SSSKNIAAFIKEQLK  338 (360)
Q Consensus       298 ----------------~~i~~~Pti~~~~~g~~~~~~~~~g~--~~~~~l~~~i~~~~~  338 (360)
                                      +++.++|+.+++.+.+++ ..++.|.  .+.+++++.|+..++
T Consensus       119 ~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I-~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         119 YFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCE-IATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             CEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBE-EEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             eeecchhHHHHHHhhhccCCCCCeEEEEcCCCEE-EEEEECCCCCChHHHHHHHHHhcC
Confidence                            135568999999766665 3456674  455889999987654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=1.2e-07  Score=75.25  Aligned_cols=91  Identities=13%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--C------------------C-----------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--E------------------H-----------  295 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~------------------~-----------  295 (360)
                      ..+.++|.||++||++|+...|.+.++++.+++  ++.+..++....  .                  .           
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            468999999999999999999999999999986  677777764210  0                  0           


Q ss_pred             CCCCCCCCcEEEEEeCCCccCceEecCCC----------CHHHHHHHHHHhcCCCCC
Q 018164          296 PKLQVEEYPTLLFYPAGDKANPIKVSARS----------SSKNIAAFIKEQLKEKDQ  342 (360)
Q Consensus       296 ~~~~i~~~Pti~~~~~g~~~~~~~~~g~~----------~~~~l~~~i~~~~~~~~~  342 (360)
                      ..+++.++|+++++....+   +.|.|..          +...|.+-|++.+.....
T Consensus       109 ~~~~v~~~P~~~liD~~G~---i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~  162 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERRL---LRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  162 (187)
T ss_dssp             HHTTCCEESEEEEECTTCB---EEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             ccccccceeeEEEEcCCCe---EEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence            1236788999999976655   4677643          335688888887766543

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.44  E-value=2.4e-07  Score=70.21  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=53.3

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CC------------------------CCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH------------------------PKLQV  300 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~------------------------~~~~i  300 (360)
                      ..++++|+||++||++|....+.+.++.+.+....++.++.+..+.+  ..                        ..+++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            47899999999999999999999999999997655788887776643  10                        02378


Q ss_pred             CCCcEEEEEeCC
Q 018164          301 EEYPTLLFYPAG  312 (360)
Q Consensus       301 ~~~Pti~~~~~g  312 (360)
                      .++|+++++...
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            899999999753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.1e-06  Score=63.71  Aligned_cols=89  Identities=7%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCC-CcccchhHHhhcCCCCCCCceEEEEeCCC--cc
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVVTAFDNKA--IS  190 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~gi~~~~p~~~~~~~~~~--~~  190 (360)
                      .+++++|.|+++| ++|+.+.+.+   .++++.+.+ +.+..+|.. +.+..+.+++.|||.++ |+++ +++.++  ..
T Consensus        21 ~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~v~~~-Pt~~-~~~~~G~~~~   97 (117)
T d2fwha1          21 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGL-PTIL-FFDGQGQEHP   97 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSS-SEEE-EECTTSCBCG
T ss_pred             CCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhehhhc-eEEE-EEeCCCcEEe
Confidence            4578999999999 9999999887   555555554 666777754 22234578999999999 9985 554432  22


Q ss_pred             cccCCCCCCHHHHHHHHHH
Q 018164          191 KFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       191 ~y~~~~~~~~~~i~~fi~~  209 (360)
                      .+++.|..+.+.+.+++++
T Consensus        98 ~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          98 QARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             GGCBCSCCCHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHhc
Confidence            3456788999999999976

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=9.1e-07  Score=68.60  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--CCCCC---CCCCCcEEEEEeCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL---QVEEYPTLLFYPAGD  313 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~~~~~---~i~~~Pti~~~~~g~  313 (360)
                      ..+.+++.|+++||++|....|.+.++++.+.   ++.+..++.+.+  ....+   +...+|.+++...+.
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~  121 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCHHHHHHHHHhccccccceeecCccc
Confidence            45677899999999999999999999998875   467777777666  33344   556788888775443

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=7e-07  Score=72.27  Aligned_cols=104  Identities=15%  Similarity=0.214  Sum_probs=76.6

Q ss_pred             CCceeecC-cccccccccC---CCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCC
Q 018164          101 FPLVTKLT-DINSASVHSS---PIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE  175 (360)
Q Consensus       101 ~p~v~~l~-~~~~~~~~~~---~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~  175 (360)
                      ...|.+++ .++|...+..   +..++|.||.+| +.|..+.+.|..+|.+|.. +.|+.||++..    .+...|++..
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~----~~~~~~~i~~  172 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNT----GAGDRFSSDV  172 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHH----TCSTTSCGGG
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccc----hhHHhCCCCC
Confidence            34677785 4667765532   234678899999 9999999999999999986 99999998754    4567899988


Q ss_pred             CCCceEEEEeCCCcccc-c---C-CCCCCHHHHHHHHHHH
Q 018164          176 SKNTVVTAFDNKAISKF-L---L-ESDLTPSNIEEFCSRL  210 (360)
Q Consensus       176 ~~p~~~~~~~~~~~~~y-~---~-~~~~~~~~i~~fi~~~  210 (360)
                      . |++++|.++.....+ .   + ..+++.+.|..|+.++
T Consensus       173 l-Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         173 L-PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             C-SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             C-CeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            8 999766554322222 1   1 2247899999998774

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.08  E-value=9.7e-06  Score=60.05  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=81.5

Q ss_pred             ceEEEcCccccccccccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCC--CCCcEE
Q 018164          231 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQV--EEYPTL  306 (360)
Q Consensus       231 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i--~~~Pti  306 (360)
                      .|..++.+|+..+. +.+++.+++|+... .....+...+.++|+.+++  ++.|+.+|.+.+ .. ..+++  ..+|.+
T Consensus         7 Lv~e~~~~n~~~~~-~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~--ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           7 LIGEIGPETYSDYM-SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRG--VINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CSEECCHHHHHHHH-HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT--TSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             ceeccChhhHHHHh-cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC--ceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            47788888888875 66788888888765 3567889999999999988  899999998887 33 34555  679999


Q ss_pred             EEEeCCCccCceEe--cCCCCHHHHHHHHHHhcCCCC
Q 018164          307 LFYPAGDKANPIKV--SARSSSKNIAAFIKEQLKEKD  341 (360)
Q Consensus       307 ~~~~~g~~~~~~~~--~g~~~~~~l~~~i~~~~~~~~  341 (360)
                      +++...... ...|  .+..+.++|.+||++.++.+.
T Consensus        83 ~i~~~~~~~-~~~~~~~~~i~~~~i~~Fi~d~~~Gkl  118 (133)
T d2djka1          83 AIQEVAKNQ-KFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             EEECTTTCC-BCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEEcCCCc-eecCCccccCCHHHHHHHHHHHHcCCC
Confidence            988544332 2333  467899999999999887553

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=1.3e-05  Score=52.48  Aligned_cols=87  Identities=20%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             CCHHHHHHHhhhCC---eEEEEEecCCCCccHHHHHHHH-hcCCCceEEEeccHHHHHHcCCCCCCCCCEEEEEecCC-C
Q 018164            4 NTVNEAEEFLKKYQ---TFVLGMFKKFEGSDYEEFVKTA-AADNEIQFVETSNFEVAKVLYPDIKSTDHFLGIVKSEP-D   78 (360)
Q Consensus         4 ~s~~~~~~~~~~~~---~~vv~ff~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~-~   78 (360)
                      ...++++.++.+..   ++|| ...-.+...-+.|.++| +++++|.|..-.+.+           ..|.+.+|=|+. .
T Consensus         3 ~v~~dl~~~l~n~t~v~pVVV-~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~~-----------~~~kLsV~LP~e~d   70 (98)
T d2b5ea2           3 AVVADLPAYLANETFVTPVIV-QSGKIDADFNATFYSMANKHFNDYDFVSAENAD-----------DDFKLSIYLPSAMD   70 (98)
T ss_dssp             EECSCHHHHHHHSCCSSCEEE-EEESCCHHHHHHHHHHHHHTTTTCEEEEEECTT-----------SCCEEEEEETTEEE
T ss_pred             chhhhhHHHHhcCcccCCEEE-eCCccccchhHHHHHHHHHhhcceEEEeccCCC-----------CCccEEEECCCCCC
Confidence            44567888888776   4555 55555678899999999 999999998865432           247788898875 3


Q ss_pred             CccccCCCC----ChHHHHHHHhhccCC
Q 018164           79 RYTGYEETF----IMDKILQFLNYNKFP  102 (360)
Q Consensus        79 ~~~~y~g~~----~~~~l~~fi~~~~~p  102 (360)
                      .++.|+|+.    +.+.+.+||+-.++|
T Consensus        71 EPIvf~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          71 EPVVYNGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             EEEECCSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             CCeEEcCccCCcccHHHHHHHHeeeccC
Confidence            788999963    567799999988876

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.9e-05  Score=57.57  Aligned_cols=94  Identities=14%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             cCCCceEEEEEEec-cchHHHHHHH---HHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccc
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF  192 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y  192 (360)
                      ..+++++|.|+++| ..|+.+....   .++.+-++.++.++.+|.+..+ +..+++.|++.++ |++ ++.+...+...
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e-~~~~~~~y~v~~~-Pti-~~idp~~ge~v  116 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE-GQRYIQFYKLGDF-PYV-SILDPRTGQKL  116 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHH-HHHHHHHHTCCSS-SEE-EEECTTTCCCC
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchh-hhhhhhheecCce-eEE-EEEeCCCCeEe
Confidence            34678889999999 9999987643   4566666667889999987653 5688999999998 888 45654333444


Q ss_pred             cCCCCCCHHHHHHHHHHHhcC
Q 018164          193 LLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       193 ~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      +.-|.++.+.+...+++++..
T Consensus       117 ~~~~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1         117 VEWHQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             EEESSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHhh
Confidence            444668999999999998864

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=97.74  E-value=4.7e-05  Score=56.88  Aligned_cols=103  Identities=8%  Similarity=-0.041  Sum_probs=72.4

Q ss_pred             cCcccccccccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcC-ceEEEEEeCCCc-------------------cc--
Q 018164          107 LTDINSASVHSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE-------------------DL--  163 (360)
Q Consensus       107 l~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~-~i~f~~vd~~~~-------------------~~--  163 (360)
                      .+..........+++.++.||++| ++|....+.+.++.++++. .+.++.+.....                   .+  
T Consensus        11 ~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (143)
T d2fy6a1          11 ADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPV   90 (143)
T ss_dssp             TTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCE
T ss_pred             CCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccccc
Confidence            333334434446678899999999 9999999999999998884 355555543211                   00  


Q ss_pred             ----chhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          164 ----AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       164 ----~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                          ...+.+.||+.+. |+.+ +.+.++.-.+...|..+.+.+.+++++..
T Consensus        91 ~~D~~~~~~~~~~v~~~-P~~~-liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          91 VTDNGGTIAQSLNISVY-PSWA-LIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             EECTTCHHHHHTTCCSS-SEEE-EECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             ccccchHHHHHcCCCcc-CEEE-EECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence                1356788999888 8884 55555444555678999999999998754

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.63  E-value=0.00017  Score=53.77  Aligned_cols=90  Identities=10%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------------------------cchhHHhhcC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------------------------LAKPFLTLFG  172 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------------------------~~~~l~~~~g  172 (360)
                      .+++.++.|+++| ++|.+..+.+.++.+++++++.++.++.....                        ....+++.|+
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~  107 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcC
Confidence            4567888899999 99999999999999999988888877653210                        0023556677


Q ss_pred             CCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          173 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       173 i~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      +... |+.+ +.+.++.-.+.+.|..+.+.+.+-+++
T Consensus       108 v~~~-P~~~-~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         108 NEYV-PAYY-VFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCS-SEEE-EECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             CCcC-CEEE-EECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            7777 8874 555554445566788888888877764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=0.00035  Score=51.23  Aligned_cols=89  Identities=11%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------ccchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~gi~~~  176 (360)
                      .+++.+|.|+++| +.|....+.+.++++++++ +.++.+...+.                    +....+.+.||+.+.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            4678899999999 9999999999999999986 45555544322                    001356677788777


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                       |+.+ +.+.++...+ ..|..+.+.|.+.|+..
T Consensus       103 -P~~~-iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         103 -PAYA-FVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             -SEEE-EECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             -CeEE-EECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence             8875 4444433333 36778999999888763

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.00074  Score=49.44  Aligned_cols=89  Identities=7%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc-------------------cchhHHhhcCCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-------------------LAKPFLTLFGLEESK  177 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~-------------------~~~~l~~~~gi~~~~  177 (360)
                      .+++.+|.||++| +.|....+.+.+++.++++ +.++.++.+...                   ....+++.||+... 
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~-  100 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ-  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS-
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcC-
Confidence            4678889999999 9999999999999999875 777777654320                   01356778888887 


Q ss_pred             CceEEEEeCCCcccc--cCCCCCCHHHHHHHHHH
Q 018164          178 NTVVTAFDNKAISKF--LLESDLTPSNIEEFCSR  209 (360)
Q Consensus       178 p~~~~~~~~~~~~~y--~~~~~~~~~~i~~fi~~  209 (360)
                      |+.+ +.+.++...+  ...|..+.+.|.+-|..
T Consensus       101 P~~~-lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         101 PAFV-FYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SEEE-EECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CEEE-EEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            8874 5554433333  23566788888877754

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.50  E-value=0.00045  Score=50.86  Aligned_cols=91  Identities=11%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc-------------------cchhHHhhcCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------LAKPFLTLFGLEES  176 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~gi~~~  176 (360)
                      .+++++|.||++| ++|....+.+.++.+++... +.++.++.+...                   ....+++.||+...
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4567889999999 99999999999999998854 777777654321                   11356677888777


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHH
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL  210 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~  210 (360)
                       |.. .+.+.++.-.+.+.|..+.+.+.++++.+
T Consensus       104 -P~~-~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         104 -PTT-FLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             -CEE-EEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             -ceE-EEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence             877 46666655566678888988888877653

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=0.00018  Score=51.24  Aligned_cols=87  Identities=16%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             CccEEEEEeC--CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC---C-CCCCCCCCCcEEEEEeCCCccCceEec
Q 018164          248 HKDVLLEVYT--PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---E-HPKLQVEEYPTLLFYPAGDKANPIKVS  321 (360)
Q Consensus       248 ~~~~~v~f~~--~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---~-~~~~~i~~~Pti~~~~~g~~~~~~~~~  321 (360)
                      .+||-+.++.  ..|..|..+...+++++..- .  ++.+...|.+..   + ..++++...|++.+..+|... .++|.
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-d--ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~-gIrF~   96 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-D--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDF-GVRYF   96 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-T--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCC-SEEEE
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-C--CeEEEEeccCcchhhhHHHhhccccCceEEEecCCccc-ceEEE
Confidence            5666555544  46999999999999997543 3  788888887653   2 246899999999999887665 68999


Q ss_pred             CCCCHHHHHHHHHHhcC
Q 018164          322 ARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       322 g~~~~~~l~~~i~~~~~  338 (360)
                      |-..-.++..||...+.
T Consensus        97 GiP~GhEf~SlilaIl~  113 (119)
T d1a8la1          97 GLPAGHEFAAFLEDIVD  113 (119)
T ss_dssp             SCCCTTHHHHHHHHHHH
T ss_pred             eccCchhHHHHHHHHHH
Confidence            99998899999887765

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.42  E-value=0.00018  Score=53.60  Aligned_cols=92  Identities=11%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcc------------------cchhHHhhcCCCCCCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED------------------LAKPFLTLFGLEESKN  178 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~------------------~~~~l~~~~gi~~~~p  178 (360)
                      .+++.+|.||+.| ++|....+.+.++.+.++..+..+.++.....                  .+..+.+.||+.+. |
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~-P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV-P  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS-C
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc-c
Confidence            4567889999999 99999999999998877654444333222110                  01257788889888 8


Q ss_pred             ceEEEEeCCCcccccCCCCCCHHHHHHHHHHHh
Q 018164          179 TVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL  211 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~  211 (360)
                      +.+ +.+.++.-.+.+.|..+.+.+.+.|++.+
T Consensus       109 ~~~-liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         109 ETF-VVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             EEE-EECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             eEE-EEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            884 66655555566678899999988887765

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00088  Score=48.36  Aligned_cols=93  Identities=12%  Similarity=0.030  Sum_probs=67.9

Q ss_pred             CHHHHHHHhhhCCeEEEEEecCCCC--ccHHHHHHHH-hcCCCceEEEeccH---HHHHHcCCCCCCCCCEEEEEecCCC
Q 018164            5 TVNEAEEFLKKYQTFVLGMFKKFEG--SDYEEFVKTA-AADNEIQFVETSNF---EVAKVLYPDIKSTDHFLGIVKSEPD   78 (360)
Q Consensus         5 s~~~~~~~~~~~~~~vv~ff~~~~~--~~~~~f~~~a-~~~~~~~F~~~~~~---~~~~~~~~~~~~~~p~i~~~~~~~~   78 (360)
                      +.+...+++++.-+.++.|+++.++  .....|.++| +.++.+.|+++...   .+++.+|++ + ..|.+++....+.
T Consensus         6 ~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~-e-~~P~~~i~~~~~~   83 (125)
T d2b5ea3           6 DGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMK-E-QFPLFAIHDMTED   83 (125)
T ss_dssp             CHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCC-S-CSSEEEEEETTTT
T ss_pred             CHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCC-c-cCCcEEEEecccC
Confidence            4566778898888888877765443  5678999999 78899999997533   357788986 2 5799988875433


Q ss_pred             Ccccc-------------CCCCChHHHHHHHhhc
Q 018164           79 RYTGY-------------EETFIMDKILQFLNYN   99 (360)
Q Consensus        79 ~~~~y-------------~g~~~~~~l~~fi~~~   99 (360)
                      ....+             .++++.+.|.+|++..
T Consensus        84 ~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~  117 (125)
T d2b5ea3          84 LKYGLPQLSEEAFDELSDKIVLESKAIESLVKDF  117 (125)
T ss_dssp             EEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred             cccccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence            22211             3678999999999864

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00046  Score=50.74  Aligned_cols=94  Identities=14%  Similarity=0.073  Sum_probs=63.1

Q ss_pred             ccCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc------------------ccchhHHhhcCCCCC
Q 018164          116 HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE------------------DLAKPFLTLFGLEES  176 (360)
Q Consensus       116 ~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~------------------~~~~~l~~~~gi~~~  176 (360)
                      +..+++++|.||++| ++|.+.+|.+.++++..-. +..+.++.+..                  +.+..+...||+.+.
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIR-VVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCC-EEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhhhhh-hcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            346778999999999 9999999999988765321 22222222100                  001257788899888


Q ss_pred             CCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          177 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       177 ~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       |+.+ +++.++...+.+.|..+.+.+.+.|...+.
T Consensus        96 -P~~~-liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          96 -PETF-LIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             -SEEE-EECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             -ceEE-EEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence             8884 555555555556788888888877776653

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.27  E-value=0.0015  Score=44.54  Aligned_cols=106  Identities=17%  Similarity=0.261  Sum_probs=71.3

Q ss_pred             eecCcccccccccCC-CceEEEEEEec--cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcccchhH-HhhcCCCCCCC
Q 018164          105 TKLTDINSASVHSSP-IKLQVYVFAKA--DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPF-LTLFGLEESKN  178 (360)
Q Consensus       105 ~~l~~~~~~~~~~~~-~~~~v~f~~~~--~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l-~~~~gi~~~~p  178 (360)
                      +.++.+++...-... ....+..|+..  .+..++...++++|+.+..  ++.|++||.+.++.-... -+-|||.-..|
T Consensus         3 rKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~P   82 (119)
T d1a8ya3           3 RKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAP   82 (119)
T ss_dssp             EECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTSC
T ss_pred             cccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCCC
Confidence            456666655544332 23456666665  7788899999999999985  499999999998611111 15789997767


Q ss_pred             ceEEEEeCCCccccc--CCC--C-CCHHHHHHHHHHHh
Q 018164          179 TVVTAFDNKAISKFL--LES--D-LTPSNIEEFCSRLL  211 (360)
Q Consensus       179 ~~~~~~~~~~~~~y~--~~~--~-~~~~~i~~fi~~~~  211 (360)
                      ++ .+.+........  +.+  . .+.+.|..||.+++
T Consensus        83 qI-GVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          83 QI-GVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             EE-EEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             ce-eeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            77 677765544443  322  2 48999999999864

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.001  Score=51.74  Aligned_cols=97  Identities=19%  Similarity=0.332  Sum_probs=69.2

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc--------------------------ccchhHHhh
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------------DLAKPFLTL  170 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------------~~~~~l~~~  170 (360)
                      .+++++|.|+++| +.|++..+.+.+++++|++++.|+.++....                          +....+.+.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            3567888999999 9999999999999999998888888864210                          001356778


Q ss_pred             cCCCCCCCceEEEEeCCCccccc--CC------CCCCHHHHHHHHHHHhcCccC
Q 018164          171 FGLEESKNTVVTAFDNKAISKFL--LE------SDLTPSNIEEFCSRLLHGTLT  216 (360)
Q Consensus       171 ~gi~~~~p~~~~~~~~~~~~~y~--~~------~~~~~~~i~~fi~~~~~g~~~  216 (360)
                      ||+... |..+ +++.++.-.|.  ++      ...+...|.+-|+..++|+..
T Consensus       111 ~~v~~~-P~~~-liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~  162 (187)
T d2cvba1         111 YRALRT-PEVF-LFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  162 (187)
T ss_dssp             TTCCEE-SEEE-EECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             ccccce-eeEE-EEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence            888887 8885 45554433332  11      124556799999999998744

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00014  Score=50.50  Aligned_cols=82  Identities=9%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             cCCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164          117 SSPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE  195 (360)
Q Consensus       117 ~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~  195 (360)
                      +...|.+++|..+| +.|+++.+.|++++..|.  ..++.+|.+..+   .+.+.||+. . |.+  +.++..    .+.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~---~l~~~y~~~-V-Pvl--~idg~~----~~~   79 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENS---TWYERYKFD-I-PVF--HLNGQF----LMM   79 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTH---HHHHHSSSS-C-SEE--EESSSE----EEE
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCH---HHHHHhccc-C-Cce--eecCce----EEe
Confidence            45677888888899 999999999999988886  456677777664   899999986 5 755  233321    234


Q ss_pred             CCCCHHHHHHHHHHHh
Q 018164          196 SDLTPSNIEEFCSRLL  211 (360)
Q Consensus       196 ~~~~~~~i~~fi~~~~  211 (360)
                      |.++.+.|.+++++..
T Consensus        80 g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          80 HRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             SSCCHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            7789999999998753

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.99  E-value=0.0023  Score=48.72  Aligned_cols=41  Identities=12%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe
Q 018164          249 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID  289 (360)
Q Consensus       249 ~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id  289 (360)
                      +..++.|....|++|.++.+.+..+...+.....+.+....
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   65 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence            34689999999999999999999998887543356665444

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0011  Score=44.23  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC-CC-------CCCCCCCcEEEEEeCCCccCceEecCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP-------KLQVEEYPTLLFYPAGDKANPIKVSAR  323 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-~~-------~~~i~~~Pti~~~~~g~~~~~~~~~g~  323 (360)
                      +|.|..+||++|.+....+.+++..+.+   +.+..+|++.+. ..       ..+++++|.+++  +|+.     ..|.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~-----IGG~   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD---FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQH-----IGGY   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS---CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEE-----EESS
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC---ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEE-----EECH
Confidence            6789999999999999999999988874   677777765552 21       124578999855  5532     2232


Q ss_pred             CCHHHHHHHHHHhcC
Q 018164          324 SSSKNIAAFIKEQLK  338 (360)
Q Consensus       324 ~~~~~l~~~i~~~~~  338 (360)
                         ++|.+++++++.
T Consensus        73 ---~el~~~~~~~~d   84 (85)
T d1egoa_          73 ---TDFAAWVKENLD   84 (85)
T ss_dssp             ---HHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcCC
Confidence               568888877653

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.94  E-value=0.0021  Score=44.28  Aligned_cols=88  Identities=13%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             ccccccC-CCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcc
Q 018164          112 SASVHSS-PIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS  190 (360)
Q Consensus       112 ~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~  190 (360)
                      ...+... +...+|.||.+. + ......|.++|..++..+.|+.+...      .+++.+|++ . |.++++.+.. ..
T Consensus        10 ~~~F~~~~d~v~VvGfF~~~-~-~~~~~~F~~~A~~~rd~~~F~~t~d~------~va~~~~v~-~-~~vvlfr~fd-e~   78 (102)
T d1a8ya2          10 LQAFENIEDEIKLIGYFKNK-D-SEHYKAFKEAAEEFHPYIPFFATFDS------KVAKKLTLK-L-NEIDFYEAFM-EE   78 (102)
T ss_dssp             HHHHTTCCSSCEEEEECSST-T-CHHHHHHHHHHHHHTTTSCEEEECCH------HHHHHHCCC-T-TCEEEECTTC-SS
T ss_pred             HHHHhccCCCEEEEEEECCC-C-cHHHHHHHHHHHHcCCCceEEEECCH------HHHHHcCCC-C-CCEEEeeecC-CC
Confidence            3445443 334556666433 1 12455889999999988999997432      788999995 3 7786555543 44


Q ss_pred             cccCCCC-CCHHHHHHHHHHH
Q 018164          191 KFLLESD-LTPSNIEEFCSRL  210 (360)
Q Consensus       191 ~y~~~~~-~~~~~i~~fi~~~  210 (360)
                      +..|.|. .+.++|.+||.+-
T Consensus        79 ~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          79 PVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             EEECSSSSCCHHHHHHHHHHT
T ss_pred             ceecCCCCCCHHHHHHHHHHh
Confidence            5667774 8999999999873

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0048  Score=46.19  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC---------------------------------
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA---------------------------------  292 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~---------------------------------  292 (360)
                      .+.+.+++.|..+.|++|+++.+.+.++..   .  ++.+..+..--                                 
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~---~--~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   98 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNA---L--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV   98 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHH---T--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhc---c--CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhcccc
Confidence            346789999999999999999999988754   2  33443333211                                 


Q ss_pred             --C----CC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          293 --N----EH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       293 --~----~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                        .    .+       ..++|+++||+++ .+|.     .+.|.++.+.|.++|++...
T Consensus        99 ~~~~~~~~i~~~~~la~~lgv~GTPt~~~-~nG~-----~v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1          99 APASCDVDIADHYALGVQLGVSGTPAVVL-SNGT-----LVPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCCCCSCCHHHHHHHHHHHTCCSSSEEEC-TTSC-----EEESCCCHHHHHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHcCCcCCCEEEE-eCCe-----EecCCCCHHHHHHHHHHHHH
Confidence              0    01       1237999999754 4553     45799999999999998653

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.81  E-value=0.00073  Score=43.65  Aligned_cols=72  Identities=19%  Similarity=0.412  Sum_probs=54.1

Q ss_pred             EEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCC-CCHHHHHH
Q 018164          253 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIAA  331 (360)
Q Consensus       253 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~-~~~~~l~~  331 (360)
                      |...++.|..|.++....++++..+.-  ...+..+. +-.++.++++.+.|++++  +|+    +.+.|. .+.++|.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi--~a~v~kv~-d~~ei~~ygVmstPalvI--dg~----vv~~G~vPs~~ei~~   74 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGI--DAEFEKIK-EMDQILEAGLTALPGLAV--DGE----LKIMGRVASKEEIKK   74 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTC--CEEEEEEC-SHHHHHHHTCSSSSCEEE--TTE----EEECSSCCCHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCC--ceEEEEeC-CHHHHHHcCCcCCCEEEE--CCE----EEEEecCCCHHHHHH
Confidence            445589999999999999999888754  55665553 112455789999999977  553    367885 59999999


Q ss_pred             HH
Q 018164          332 FI  333 (360)
Q Consensus       332 ~i  333 (360)
                      ||
T Consensus        75 ~L   76 (77)
T d1iloa_          75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            86

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.73  E-value=0.0012  Score=42.61  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=37.2

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----CCCCCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PKLQVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~~~~i~~~Pti~~  308 (360)
                      ++.|..+||++|......|++.        ++.+-.+|++.+ +.    ...+..++|++++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV   56 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE
Confidence            5778999999999988777654        567777888876 33    2347889998854

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00051  Score=44.82  Aligned_cols=49  Identities=16%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC----CCCCCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PKLQVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~----~~~~i~~~Pti~~  308 (360)
                      ++.|..+||++|..+...|.+.        ++.+-.+|++.+ +.    ...+..++|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5678899999999988777664        577788898887 33    2348889999876

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0038  Score=43.70  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             ccccccCCCceEEEEEEeccchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCccc
Q 018164          112 SASVHSSPIKLQVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISK  191 (360)
Q Consensus       112 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~  191 (360)
                      .+.+...+...+|.||.+.  -......|.++|+.+++ +.|+.+...      .+++.+|++.  |.++++.. .....
T Consensus        11 ~e~f~~~~~v~VVGfF~~~--~~~~~~~F~~~A~~~~d-~~F~~t~~~------~v~~~~~v~~--~~Ivl~k~-~de~~   78 (110)
T d1bjxa_          11 AESLVESSEVAVIGFFKDV--ESDSAKQFLQAAEAIDD-IPFGITSNS------DVFSKYQLDK--DGVVLFKK-FDEGR   78 (110)
T ss_dssp             HHHHHHHSSEEEEEECTTT--TSHHHHHHHHHHHHCSS-SCEEEECCS------HHHHHTTCSS--CEEEEEES-SSSSB
T ss_pred             HHHHhccCCeEEEEEEcCC--CchHHHHHHHHHHhCcC-ceEEEECCH------HHHHHcCCCC--CeEEEecc-CCccc
Confidence            3445544544555565433  12345588999999965 899886543      6788899863  66654544 33444


Q ss_pred             ccCCCCCCHHHHHHHHHHHhcC
Q 018164          192 FLLESDLTPSNIEEFCSRLLHG  213 (360)
Q Consensus       192 y~~~~~~~~~~i~~fi~~~~~g  213 (360)
                      ..+.|..+.+.|.+||....-+
T Consensus        79 ~~~~~~~~~~~l~~fi~~~~~P  100 (110)
T d1bjxa_          79 NNFEGEVTKENLLDFIKHNQLP  100 (110)
T ss_dssp             CCCCSCCCHHHHHHHHHHHSSC
T ss_pred             cccCCCCCHHHHHHHHHHcCcC
Confidence            4468889999999999997543

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0046  Score=44.97  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=46.0

Q ss_pred             ccCCCceEEEEEEec-cchHHHHHHHHHHHHh--hcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCC
Q 018164          116 HSSPIKLQVYVFAKA-DDLKSLLEPLEDIARN--FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK  187 (360)
Q Consensus       116 ~~~~~~~~v~f~~~~-~~~~~~~~~~~~la~~--~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~  187 (360)
                      ...+++++|.|+++| ++|+.+.+.+.+..+.  ...++..+.+|++...   ..+..+......|++ ++++..
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~---~~~~~~~~~~~~Pt~-~~~d~~   92 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIPRI-LFLDPS   92 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSSEE-EEECTT
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH---HHHHHHhhcccceeE-EEECCC
Confidence            346789999999999 9999999988654432  3356888999988664   444433333332666 455543

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0021  Score=49.67  Aligned_cols=46  Identities=17%  Similarity=0.141  Sum_probs=39.4

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN  293 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~  293 (360)
                      ..+.+||.++|+||+.|.+..+.+++|.+++++. .+.+.-+-|...
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~nqF   68 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQF   68 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCS
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeecccc
Confidence            4789999999999999999889999999999763 577877876653

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=96.47  E-value=0.0057  Score=45.04  Aligned_cols=67  Identities=10%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcc----------------c-----chhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADED----------------L-----AKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~----------------~-----~~~l~~~~gi  173 (360)
                      .+++.+|.|+++| ++|.+..+.+.++.+++..  .+.++.|..+...                +     ...+.+.||+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4677889999999 9999999999999999953  4777777765331                0     0235677888


Q ss_pred             CCCCCceEEEEeC
Q 018164          174 EESKNTVVTAFDN  186 (360)
Q Consensus       174 ~~~~p~~~~~~~~  186 (360)
                      .+. |+.+ +.+.
T Consensus       107 ~~~-Pt~~-lID~  117 (144)
T d1o73a_         107 ESI-PTLI-TINA  117 (144)
T ss_dssp             CSS-SEEE-EEET
T ss_pred             CcC-CEEE-EEEC
Confidence            888 8885 4444

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.45  E-value=0.0056  Score=45.12  Aligned_cols=67  Identities=12%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcC--ceEEEEEeCCCcc----------------c-----chhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADED----------------L-----AKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~--~i~f~~vd~~~~~----------------~-----~~~l~~~~gi  173 (360)
                      .+++.+|.|+++| ++|...++.+.++.+++++  .+.++.|..+...                +     ...+.+.|||
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            4667888899999 9999999999999999975  3667777665331                0     0135678899


Q ss_pred             CCCCCceEEEEeC
Q 018164          174 EESKNTVVTAFDN  186 (360)
Q Consensus       174 ~~~~p~~~~~~~~  186 (360)
                      .+. |+.+ +.+.
T Consensus       107 ~~i-Pt~~-lid~  117 (144)
T d1i5ga_         107 KSI-PTLV-GVEA  117 (144)
T ss_dssp             CSS-SEEE-EEET
T ss_pred             CCc-CEEE-EEeC
Confidence            888 9885 4443

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.0028  Score=47.22  Aligned_cols=81  Identities=11%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             ccCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--------------------------------C
Q 018164          246 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--------------------------------N  293 (360)
Q Consensus       246 ~~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--------------------------------~  293 (360)
                      .+.+.+++.|.-+.|++|+++.+.+..+.+...   .+.+.......                                .
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI---TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE---EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccCc---eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            345678999999999999999999888865321   23333221110                                0


Q ss_pred             -----CC-------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 018164          294 -----EH-------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE  335 (360)
Q Consensus       294 -----~~-------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~  335 (360)
                           .+       ..++|+++||+++ .+|.     .+.|....+.|.++|++
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~-----~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVT-STGE-----LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC-----CCCSCCCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEE-cCCc-----EecCCCCHHHHHHHHHh
Confidence                 01       1238999999876 3453     45799999999999986

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.33  E-value=0.0025  Score=41.06  Aligned_cols=49  Identities=12%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC-----CCCCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-----KLQVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-----~~~i~~~Pti~~  308 (360)
                      +++|..++|++|..+...|.+.        ++.+..+|++.+...     ..+..++|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            5789999999999998877765        466777788776332     236788999754

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.27  E-value=0.002  Score=48.54  Aligned_cols=91  Identities=8%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------CC-------------CCCCC--
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------EH-------------PKLQV--  300 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------~~-------------~~~~i--  300 (360)
                      ..++++|.|| +.||+.|....+.+.++...+.+. .+.++.+..+..          .+             ..+++  
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  107 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence            4678999988 899999999999999888888764 455555543321          01             01122  


Q ss_pred             --------CCCcEEEEEeCCCccCceEec-----CCCCHHHHHHHHHHhcCC
Q 018164          301 --------EEYPTLLFYPAGDKANPIKVS-----ARSSSKNIAAFIKEQLKE  339 (360)
Q Consensus       301 --------~~~Pti~~~~~g~~~~~~~~~-----g~~~~~~l~~~i~~~~~~  339 (360)
                              ...|+++++..++++. ..+.     +..+.+++.+-+++.++.
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~-~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVA-YKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEE-EEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             cccccccccceeeEEEEcCCCEEE-EEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence                    2468888886655542 2222     245678888888877653

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.25  E-value=0.0017  Score=42.90  Aligned_cols=49  Identities=8%  Similarity=0.168  Sum_probs=36.3

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-C-C----CCCCCCcEEEE
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P-K----LQVEEYPTLLF  308 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~-~----~~i~~~Pti~~  308 (360)
                      +.+|..+||++|.+....+++.        ++.+..+|++.+.. . .    .+..++|.+++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            4568899999999988777665        56778888887632 1 1    27788998854

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.022  Score=43.04  Aligned_cols=81  Identities=10%  Similarity=0.186  Sum_probs=56.5

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC--C------------------------------
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--E------------------------------  294 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~--~------------------------------  294 (360)
                      +.+.+++.|..+.|++|+.+.+.++++....    ++.+..++....  +                              
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~  110 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  110 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence            3456789999999999999999888876532    566666663211  0                              


Q ss_pred             -----C---------------CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHHHHHH
Q 018164          295 -----H---------------PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI  333 (360)
Q Consensus       295 -----~---------------~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i  333 (360)
                           .               ..+++++.|++++...+..  ...+.|....+.|.+.|
T Consensus       111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~--~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         111 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT--LQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE--EEEEESSCCHHHHHHHT
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--EEEecCCCCHHHHHHHh
Confidence                 0               0115789999998776544  34688988888877654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.03  E-value=0.0034  Score=47.70  Aligned_cols=44  Identities=25%  Similarity=0.322  Sum_probs=36.7

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      ..+.++|.|| +.||+.|....+.+.++...++.. ++.+..+..+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d   76 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCD   76 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESS
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCC
Confidence            3568999998 999999999999999999999764 5667767654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.94  E-value=0.014  Score=42.77  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc--eEEEEEeCCCc---------------------ccchhHHhhcCC
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK--IMFTAVDIADE---------------------DLAKPFLTLFGL  173 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~--i~f~~vd~~~~---------------------~~~~~l~~~~gi  173 (360)
                      .+++++|.|+++| +.|....+.+.++++++..+  +.++.+..+..                     +....+.+.|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4667888999999 99999999999999999743  66666665532                     001357788999


Q ss_pred             CCCCCceEEEEeCC
Q 018164          174 EESKNTVVTAFDNK  187 (360)
Q Consensus       174 ~~~~p~~~~~~~~~  187 (360)
                      .+. |+.+ +.+.+
T Consensus       105 ~~~-Pt~~-liD~~  116 (144)
T d1o8xa_         105 ESI-PTLI-GVDAD  116 (144)
T ss_dssp             CSS-SEEE-EEETT
T ss_pred             CcC-CEEE-EEeCC
Confidence            998 9885 44543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.75  E-value=0.031  Score=44.59  Aligned_cols=88  Identities=11%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------CC------------C-
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------EH------------P-  296 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------~~------------~-  296 (360)
                      .++.++++|| +.||+.|..-.+.+.++...|+.. ++.+.-+.++..                .+            . 
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            4667888888 999999999999999999998754 566766655431                01            0 


Q ss_pred             CCCC-------CCCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHH
Q 018164          297 KLQV-------EEYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKE  335 (360)
Q Consensus       297 ~~~i-------~~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~  335 (360)
                      .|++       ...|+++++...+.++.+.+.   -.|+.+++++.|+.
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            1243       357999999666665333222   25789999998864

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.023  Score=43.98  Aligned_cols=41  Identities=12%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHH---HhcCCCCEEEEEEeC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAK---HFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~---~~~~~~~~~~~~id~  290 (360)
                      +++.++.|++-+|+||..+.|.+..+.+   .+.+  ++.|..+-+
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~~  156 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHV  156 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEEC
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEec
Confidence            5677999999999999999998765444   4443  556655544

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.0072  Score=45.86  Aligned_cols=87  Identities=10%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-C-------------CC-------------CCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-------------HP-------------KLQ  299 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~-------------~~-------------~~~  299 (360)
                      .+.++|.|| +.||+.|....+.+.+....++.. ++.+..+..+.. .             ++             .|+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            567888888 999999999999999999999764 567777765431 0             10             113


Q ss_pred             C-----CCCcEEEEEeCCCccCceEe-cC--CCCHHHHHHHHHH
Q 018164          300 V-----EEYPTLLFYPAGDKANPIKV-SA--RSSSKNIAAFIKE  335 (360)
Q Consensus       300 i-----~~~Pti~~~~~g~~~~~~~~-~g--~~~~~~l~~~i~~  335 (360)
                      +     ...|+.+++...+++..+.. ..  .++.+++++.|+.
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            3     46788888865555433222 21  3677888888874

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.013  Score=43.62  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA  290 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~  290 (360)
                      ++.++++|| +.||+.|....+.|.+....++.  +..+..+..
T Consensus        33 ~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~   74 (156)
T d2a4va1          33 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSA   74 (156)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEES
T ss_pred             ccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeecc
Confidence            445555666 88999999999999999999975  444555553

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.01  Score=44.06  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             CccEEEEE-eCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      ++++++.| ++.||+.|....+.+.++...+... ++.+..+..+.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~-~~~vi~vs~d~   73 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND-DSAALAISVGP   73 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS-SEEEEEEESCC
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhccc-ccccccccchh
Confidence            34555555 4899999999888998888888653 67777776543

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.061  Score=37.69  Aligned_cols=89  Identities=9%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             CCceEEEEEEec---cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCCCCCCceEEEEeCCCcccccCC
Q 018164          119 PIKLQVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE  195 (360)
Q Consensus       119 ~~~~~v~f~~~~---~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~  195 (360)
                      ..|+.+.+|..+   +.|+.+...++++|.-- .++.+...+..... ++.+++.+|+... |++. +...+.....+|.
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-dki~~~~~~~~~~e-~~~~~~~~~ver~-Ps~~-i~~~g~~~gIrF~   96 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-DKLSYEIVDFDTPE-GKELAKRYRIDRA-PATT-ITQDGKDFGVRYF   96 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TTEEEEEEETTSHH-HHHHHHHTTCCSS-SEEE-EEETTBCCSEEEE
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-CCeEEEEeccCcch-hhhHHHhhccccC-ceEE-EecCCcccceEEE
Confidence            345666777654   45888888888887654 47999888876542 3478999999988 8884 5555444445556


Q ss_pred             CCCCHHHHHHHHHHHh
Q 018164          196 SDLTPSNIEEFCSRLL  211 (360)
Q Consensus       196 ~~~~~~~i~~fi~~~~  211 (360)
                      |-..-..+..||...+
T Consensus        97 GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          97 GLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             SCCCTTHHHHHHHHHH
T ss_pred             eccCchhHHHHHHHHH
Confidence            7666667777777655

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.43  E-value=0.0019  Score=44.88  Aligned_cols=57  Identities=16%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--CCC-----CCCCCCcEEEEEeCCC
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPK-----LQVEEYPTLLFYPAGD  313 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~~~-----~~i~~~Pti~~~~~g~  313 (360)
                      +|+|..+||++|......|.++...+.   .+.+..+|...+.  ...     .+..++|++++  +|+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~---~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccc---eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            678999999999999888876543322   4667777766541  211     16678998854  553

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=95.11  E-value=0.012  Score=44.33  Aligned_cols=44  Identities=16%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             CccEEEEEeCC-CChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 018164          248 HKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA  292 (360)
Q Consensus       248 ~~~~~v~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~  292 (360)
                      .+.++|.||.. ||+.|....+.+.++...|... ++.+..+..+.
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~   75 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDT   75 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEeccccc
Confidence            56788899955 9999999999999999999754 57777676654

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.062  Score=39.53  Aligned_cols=91  Identities=11%  Similarity=0.149  Sum_probs=58.0

Q ss_pred             cCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCC---CCEEEEEEeCCCC-CCC-------------------------
Q 018164          247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGL---DNLVIAKIDASAN-EHP-------------------------  296 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~-~~~-------------------------  296 (360)
                      ..|.+||.|+.+||+ .|....+.+.++.+.+...   ..+.+..+..+.. +..                         
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            478999999999996 6988888888887766332   1344444443221 110                         


Q ss_pred             ----CCCC---------------CCCcEEEEEeCCCccCceEecCCCCHHHHHHHHHHhcC
Q 018164          297 ----KLQV---------------EEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK  338 (360)
Q Consensus       297 ----~~~i---------------~~~Pti~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~~~  338 (360)
                          .+++               ...++++++....++ .-.|.+..+.+.|.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i-~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF-LDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCE-EEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcE-EEEECCCCCHHHHHHHHHHHHh
Confidence                0011               123677888555444 2357778899999999888765

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.96  E-value=0.0088  Score=45.19  Aligned_cols=64  Identities=11%  Similarity=-0.082  Sum_probs=46.3

Q ss_pred             cCccccccccc-CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          107 LTDINSASVHS-SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       107 l~~~~~~~~~~-~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      ++.+...++-. .+...++.|+.+| ++|.+..|.+.++++.+++ +.+..|+.+...   +.++.|...
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~-~~~~~i~~d~~~---~~~~~~~~~  106 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN-IELAIISKGRAE---DDLRQRLAL  106 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT-EEEEEECHHHHH---HHTTTTTTC
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC-CcEEEEECccCH---HHHHHHHHh
Confidence            34444444433 2334577899999 9999999999999999874 888888877554   777777554

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=94.87  E-value=0.1  Score=39.25  Aligned_cols=92  Identities=15%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             CCCceEEEEEEec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCC--CcccchhHHhhcCCC-------------------
Q 018164          118 SPIKLQVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA--DEDLAKPFLTLFGLE-------------------  174 (360)
Q Consensus       118 ~~~~~~v~f~~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~--~~~~~~~l~~~~gi~-------------------  174 (360)
                      .++++++.|+++| +.|....+.+.++.+++.++ +.++.+..+  ..+-.+.+++.+++.                   
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            4578888999999 99999999999999988743 455555433  221112334444433                   


Q ss_pred             ----CCCCceEEEEeCCCcccccCCCC--CCHHHHHHHHHHHh
Q 018164          175 ----ESKNTVVTAFDNKAISKFLLESD--LTPSNIEEFCSRLL  211 (360)
Q Consensus       175 ----~~~p~~~~~~~~~~~~~y~~~~~--~~~~~i~~fi~~~~  211 (360)
                          +. |+. ++.+.++.-.+.+.|.  .+.+++.++|+..+
T Consensus       135 ~~v~~~-P~~-~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGM-PTS-VLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSS-SEE-EEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCC-CeE-EEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                23 555 3555444333334453  45678888887654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.017  Score=43.42  Aligned_cols=41  Identities=22%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .++++|.|| +.||+.|....+.|.+++..+.   ++.+..|..+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcC
Confidence            567888777 7799999999999999887764   4556555543

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.61  E-value=0.037  Score=41.16  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +++++|+|| +.||+.|....+.+.++...+... +..+.-|..+
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d   69 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVD   69 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESS
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCc
Confidence            568999999 999999999999999999988654 5556555543

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.39  E-value=0.15  Score=34.43  Aligned_cols=81  Identities=10%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccCceEecCCCCHH
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSK  327 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~  327 (360)
                      .++|-+..+...|..|..+...++++|..- .  ++.+..-+.        .....|++.+.++|... .++|.|-..-.
T Consensus        18 ~~~V~l~~~~~~~~~s~el~~~l~eva~lS-d--kI~~~~~~~--------~~~r~Ps~~i~~~g~~~-gI~F~GiP~Gh   85 (102)
T d1hyua3          18 TKPVELIATLDDSAKSAEIKELLAEIAELS-D--KVTFKEDNT--------LPVRKPSFLITNPGSQQ-GPRFAGSPLGH   85 (102)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTC-T--TEEEEECTT--------SSSCSSEEEEECTTCCC-SCEEESCCCGG
T ss_pred             CCCEEEEEEeCCChhHHHHHHHHHHHHhhC-C--CeEEEEcCC--------CCCCCCeEEEecCCCEe-eeEEecCCCcc
Confidence            567777788889999999988888887643 2  676643221        12346999998877664 68999998888


Q ss_pred             HHHHHHHHhcCCC
Q 018164          328 NIAAFIKEQLKEK  340 (360)
Q Consensus       328 ~l~~~i~~~~~~~  340 (360)
                      ++..||...++..
T Consensus        86 EF~Slilail~v~   98 (102)
T d1hyua3          86 EFTSLVLALLWTG   98 (102)
T ss_dssp             GHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhcc
Confidence            8888888776543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=94.29  E-value=0.059  Score=34.31  Aligned_cols=70  Identities=9%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             EEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CC-CCCCCCCCcEEEEEeCCCccCceEecCCCCHHHH
Q 018164          252 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI  329 (360)
Q Consensus       252 ~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~-~~~~i~~~Pti~~~~~g~~~~~~~~~g~~~~~~l  329 (360)
                      +.+|..++|..|......+.+   . .   .+.+..+|++.+ ++ .+++.. +|.+. . +|..    ...-..+.+.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~-~---~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~-~~~~----~l~w~fd~~~l   67 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---A-R---AGAFFSVFIDDDAALESAYGLR-VPVLR-D-PMGR----ELDWPFDAPRL   67 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---T-T---CCCEEEEECTTCHHHHHHHTTT-CSEEE-C-TTCC----EEESCCCHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---c-c---CCcEEEEEccCCHHHHHHhCCe-eeEEE-E-CCee----EEcCccCHHHH
Confidence            567899999999877544432   1 1   366888899888 44 355543 79664 2 3322    22335799999


Q ss_pred             HHHHHH
Q 018164          330 AAFIKE  335 (360)
Q Consensus       330 ~~~i~~  335 (360)
                      .+||..
T Consensus        68 ~~~L~~   73 (75)
T d1ttza_          68 RAWLDA   73 (75)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999863

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.11  E-value=0.041  Score=42.48  Aligned_cols=87  Identities=17%  Similarity=0.263  Sum_probs=61.8

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-----------------CC--C-----------
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------EH--P-----------  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~--~-----------  296 (360)
                      .+.++++|| +.||..|..-...+.++...|+.. ++.+..|..+..                 .+  +           
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            568999999 999999999999999999999764 677777776531                 00  0           


Q ss_pred             CCCC------CCCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHH
Q 018164          297 KLQV------EEYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKE  335 (360)
Q Consensus       297 ~~~i------~~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~  335 (360)
                      .|++      ..+|+.++......+..+.+.   -.++.+++.+.|+.
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            1122      246788888766665433322   25789999998865

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=94.03  E-value=0.022  Score=43.10  Aligned_cols=88  Identities=10%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CC-----------C
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EH-----------P  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~-----------~  296 (360)
                      +++++++|| +.||+.|....+.+.+....+++. ++.+..+..+.-                   ..           .
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            457889999 999999999999999999998654 566666665431                   00           0


Q ss_pred             CCCC-----CCCcEEEEEeCCCccCceEecC---CCCHHHHHHHHHHh
Q 018164          297 KLQV-----EEYPTLLFYPAGDKANPIKVSA---RSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i-----~~~Pti~~~~~g~~~~~~~~~g---~~~~~~l~~~i~~~  336 (360)
                      .|++     ...|+.++...+.++....+..   .++.+++++.|+..
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            1122     1357788887766653223221   45778888777643

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.01  E-value=0.022  Score=43.15  Aligned_cols=45  Identities=16%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             cCccEEEEEeCCCCh-hhHHHHHHHHHHHHHhcCC-CCEEEEEEeCC
Q 018164          247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFKGL-DNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~~~~~-~~~~~~~id~~  291 (360)
                      .++.++|.|+.+||. .|....+.+.++...+... .++.+..|.++
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            478999999999996 6999999999988887432 25666666554

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.94  E-value=0.33  Score=32.73  Aligned_cols=103  Identities=8%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             eEEEcCccccccccc-cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCC-C-----CCC--CCC
Q 018164          232 VQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P-----KLQ--VEE  302 (360)
Q Consensus       232 v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~-----~~~--i~~  302 (360)
                      ++++...++.++-.+ -.+..+|-|-.+....-..+..+++++|+....++++.|+.||-+.-.+ .     .|+  +.+
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~   81 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA   81 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCC
Confidence            355656565554433 3566777787777788889999999999999888899999999877633 1     234  444


Q ss_pred             CcEEEEEeCCCccCceEecC-----CCCHHHHHHHHHHh
Q 018164          303 YPTLLFYPAGDKANPIKVSA-----RSSSKNIAAFIKEQ  336 (360)
Q Consensus       303 ~Pti~~~~~g~~~~~~~~~g-----~~~~~~l~~~i~~~  336 (360)
                       |+|=+..-.... .+-|.-     ..+.+.|.+||.+.
T Consensus        82 -PqIGVVdv~dad-SvW~~~~~~~d~~t~~~Le~WiedV  118 (119)
T d1a8ya3          82 -PQIGVVNVTDAD-SVWMEMDDEEDLPSAEELEDWLEDV  118 (119)
T ss_dssp             -CEEEEEETTTCC-EEECC-------CCHHHHHHHHHHH
T ss_pred             -CceeeEecccCc-ceeeecccccccccHHHHHHHHHHh
Confidence             999988665543 344431     34889999999875

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.6  Score=30.08  Aligned_cols=82  Identities=7%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             cccccccccC--ccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCCCCCCCCCcEEEEEeCCCccC
Q 018164          239 TFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKAN  316 (360)
Q Consensus       239 ~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pti~~~~~g~~~~  316 (360)
                      +.+.++.+..  .||+|..--..    ..+...|.++|..+.+  ++.|+..+...+         =|.+-+|-.|....
T Consensus         7 dl~~~l~n~t~v~pVVV~~Gv~d----~~fNeTF~~~A~~l~~--Dy~Fvs~~~~~~---------~~kLsV~LP~e~dE   71 (98)
T d2b5ea2           7 DLPAYLANETFVTPVIVQSGKID----ADFNATFYSMANKHFN--DYDFVSAENADD---------DFKLSIYLPSAMDE   71 (98)
T ss_dssp             CHHHHHHHSCCSSCEEEEEESCC----HHHHHHHHHHHHHTTT--TCEEEEEECTTS---------CCEEEEEETTEEEE
T ss_pred             hhHHHHhcCcccCCEEEeCCccc----cchhHHHHHHHHHhhc--ceEEEeccCCCC---------CccEEEECCCCCCC
Confidence            3555555555  48888774322    5678889999999988  899999885543         26777776676556


Q ss_pred             ceEecCC----CCHHHHHHHHHH
Q 018164          317 PIKVSAR----SSSKNIAAFIKE  335 (360)
Q Consensus       317 ~~~~~g~----~~~~~l~~~i~~  335 (360)
                      |+.|.|.    .+.+.+.+||+-
T Consensus        72 PIvf~G~~~~i~~a~~l~~WlkV   94 (98)
T d2b5ea2          72 PVVYNGKKADIADADVFEKWLQV   94 (98)
T ss_dssp             EEECCSCHHHHTSHHHHHHHHHH
T ss_pred             CeEEcCccCCcccHHHHHHHHee
Confidence            9999995    356779999974

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=92.95  E-value=0.091  Score=39.52  Aligned_cols=41  Identities=22%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             cCccEEEEEeCCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEe
Q 018164          247 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID  289 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id  289 (360)
                      +.++.+|.|....|++|+.+.+.+..+.+.+..  .+.+..+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~   57 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNH   57 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhccc--ccceeEEe
Confidence            456789999999999999999999999888865  44444444

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.89  E-value=0.069  Score=39.83  Aligned_cols=42  Identities=17%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .++.++|.|| +.||+.|....+.+.+....+.   ++.+..|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEec
Confidence            3567777777 7899999998887777666664   4555555433

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=92.51  E-value=0.053  Score=40.84  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      +++++|+|| +.||+.|......+.+....|+.. ++.+..|.++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D   70 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVD   70 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESS
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCC
Confidence            578899998 899999999999999999998764 6777777765

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=92.20  E-value=0.14  Score=38.02  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~  291 (360)
                      .+.+++.|| +.||+.|....+.|++...++++   +.++-+.++
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~---~~vi~iS~d   83 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN---TIVLCISAD   83 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT---EEEEEEESS
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc---ceEEeecCC
Confidence            567888888 66788899999999998888863   455555443

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.18  E-value=0.033  Score=38.58  Aligned_cols=47  Identities=17%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCCC-----CCCCCCcEEEEEeCCCc
Q 018164          258 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPK-----LQVEEYPTLLFYPAGDK  314 (360)
Q Consensus       258 ~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~~-----~~i~~~Pti~~~~~g~~  314 (360)
                      |.|++|.+....|..+        ++.+..+|++.+ +..+     -+..++|.|++  +|+.
T Consensus        28 p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~~   80 (109)
T d1wika_          28 AKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGDL   80 (109)
T ss_dssp             CCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSSE
T ss_pred             CCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCEE
Confidence            8899999998777654        456777787776 3321     16678899864  5543

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.13  E-value=0.057  Score=40.46  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHh
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHF  277 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~  277 (360)
                      ..+++++.|| +.||+.|....+.+.+....+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~   73 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS   73 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence            4578888888 558888999888887776655

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.05  E-value=0.12  Score=39.35  Aligned_cols=87  Identities=8%  Similarity=0.090  Sum_probs=58.9

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCC--------------C-------------CCCC
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------H-------------PKLQ  299 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------~-------------~~~~  299 (360)
                      .+.++++|| +.||+.|....+.+++....|+.. ++.+..+.++.-.              +             ..|+
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            567889999 889999999999999999998754 5666666554421              1             0122


Q ss_pred             CC------CCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHH
Q 018164          300 VE------EYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKE  335 (360)
Q Consensus       300 i~------~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~  335 (360)
                      +.      ..|+.++....+.++.+..+   -.++.+++.+.|+.
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka  153 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA  153 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence            21      35778888665555333322   25788999988875

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.28  Score=37.62  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=59.7

Q ss_pred             CccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-------------------CCC-----------
Q 018164          248 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-------------------EHP-----------  296 (360)
Q Consensus       248 ~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-------------------~~~-----------  296 (360)
                      .+.++|+|| +.||..|......+.+....|+.. ++.+..|.++..                   ..+           
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            567888888 999999999999999999999764 677777765431                   111           


Q ss_pred             CCCCC------CCcEEEEEeCCCccCce-Eec--CCCCHHHHHHHHHHh
Q 018164          297 KLQVE------EYPTLLFYPAGDKANPI-KVS--ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ~~~i~------~~Pti~~~~~g~~~~~~-~~~--g~~~~~~l~~~i~~~  336 (360)
                      .|++-      .+|+.++....+.++.+ .+.  -.++.+++.+.|+..
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            01221      36778888665555332 222  157889998887654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=1.2  Score=32.12  Aligned_cols=30  Identities=10%  Similarity=0.071  Sum_probs=19.9

Q ss_pred             cCccEEEEEeCCCCh-hhHHHHHHHHHHHHH
Q 018164          247 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKH  276 (360)
Q Consensus       247 ~~~~~~v~f~~~~c~-~c~~~~~~~~~la~~  276 (360)
                      ..|.+||.|+..||. .|..+...+..+...
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~   55 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNT   55 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhh
Confidence            468999999999986 455554444444433

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.54  Score=36.63  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=58.9

Q ss_pred             cCccEEEEEe-CCCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC----------------------CCC-------
Q 018164          247 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------------EHP-------  296 (360)
Q Consensus       247 ~~~~~~v~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~----------------------~~~-------  296 (360)
                      .++.++++|| +.||..|......+.+....|+.. ++.+.-+-++..                      ..+       
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~  104 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNR  104 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTC
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccccccchhhhhhhhhhccccccccCcccccccCccc
Confidence            3567888888 789999999999999999999764 566666654421                      111       


Q ss_pred             ----CCCCC------------CCcEEEEEeCCCccCceEec---CCCCHHHHHHHHHHh
Q 018164          297 ----KLQVE------------EYPTLLFYPAGDKANPIKVS---ARSSSKNIAAFIKEQ  336 (360)
Q Consensus       297 ----~~~i~------------~~Pti~~~~~g~~~~~~~~~---g~~~~~~l~~~i~~~  336 (360)
                          .|++-            ..++++++...+.++.+.+.   -.|+.+++.+.|+..
T Consensus       105 ~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         105 ELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence                11221            35778888665565333222   257899999987754

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.11  E-value=1.4  Score=31.71  Aligned_cols=80  Identities=11%  Similarity=0.085  Sum_probs=50.9

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCc---------------------------------------
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE---------------------------------------  161 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~---------------------------------------  161 (360)
                      .++.|++.. +.|+++.+.++.+.+... .+.+....-...                                       
T Consensus        29 ~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~i  107 (150)
T d1t3ba1          29 VVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIV  107 (150)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSHH
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhhHH
Confidence            345555555 999999999988876543 244433211110                                       


Q ss_pred             ccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHH
Q 018164          162 DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR  209 (360)
Q Consensus       162 ~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~  209 (360)
                      .-+..+.+.+||+++ |+++ + .+  +..  ..|....+.|.+.|++
T Consensus       108 ~~~~~la~~lGv~GT-Pt~~-~-~n--G~~--i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         108 KKHYELGIQFGVRGT-PSIV-T-ST--GEL--IGGYLKPADLLRALEE  148 (150)
T ss_dssp             HHHHHHHHHHTCCSS-CEEE-C-TT--SCC--CCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCCC-CEEE-E-cC--CcE--ecCCCCHHHHHHHHHh
Confidence            001356789999999 9873 2 22  233  3788899999998875

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.04  E-value=1.7  Score=31.89  Aligned_cols=91  Identities=10%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CCceEEEEE-Eec-cchHHHHHHHHHHHHhhcCc-eEEEEEeCCCcc----------------------cchhHHhhcCC
Q 018164          119 PIKLQVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED----------------------LAKPFLTLFGL  173 (360)
Q Consensus       119 ~~~~~v~f~-~~~-~~~~~~~~~~~~la~~~~~~-i~f~~vd~~~~~----------------------~~~~l~~~~gi  173 (360)
                      +++.++.|| ..| +.|..-.+.|.+..++|+.. +.++.|..+...                      ....+++.||+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv  123 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  123 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCC
Confidence            444555555 566 88999999999999999853 666666555221                      12356677776


Q ss_pred             C---C-CCCceEEEEeCCCcccccC----CCCCCHHHHHHHHHHH
Q 018164          174 E---E-SKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL  210 (360)
Q Consensus       174 ~---~-~~p~~~~~~~~~~~~~y~~----~~~~~~~~i~~fi~~~  210 (360)
                      -   + ..|+. .+.+..+.-+|..    .-..+.+++.+.++..
T Consensus       124 ~~~~~~~~r~~-fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         124 LNADGVADRVT-FIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             BCTTSSBCEEE-EEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CccCCccceeE-EEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            3   1 11334 3444443333321    1235667777777654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=0.24  Score=37.33  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             CccEEEEEeCCCChhhHHHHHHHHHHHHHhcCC-CCEEEEEEeCC
Q 018164          248 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDAS  291 (360)
Q Consensus       248 ~~~~~v~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~  291 (360)
                      ..+.+|.|++-.|+||+.+.+.+..+.+..... ..+.+..+...
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            456788999999999999998876555433221 24666666543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=0.78  Score=33.37  Aligned_cols=81  Identities=14%  Similarity=0.079  Sum_probs=52.4

Q ss_pred             eEEEEEEec-cchHHHHHHHHHHHHhhcCceEEEEEeCCC----------------------------------------
Q 018164          122 LQVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIAD----------------------------------------  160 (360)
Q Consensus       122 ~~v~f~~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~----------------------------------------  160 (360)
                      .++.|++.. +.|+++.+.++++.+..   +.+.+..---                                        
T Consensus        29 tIv~FsD~~CpyC~~~~~~l~~~~~~~---~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (156)
T d1eeja1          29 VITVFTDITCGYCHKLHEQMADYNALG---ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDV  105 (156)
T ss_dssp             EEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSC
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHhhccC---ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcc
Confidence            455566566 99999999988876533   3333322110                                        


Q ss_pred             -cccchhHHhhcCCCCCCCceEEEEeCCCcccccCCCCCCHHHHHHHHHHHhc
Q 018164          161 -EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH  212 (360)
Q Consensus       161 -~~~~~~l~~~~gi~~~~p~~~~~~~~~~~~~y~~~~~~~~~~i~~fi~~~~~  212 (360)
                       -.-+..+.+.+||+++ |+++  +.+  ++.+  .|..+.+.|.++|++...
T Consensus       106 ~i~~~~~la~~lgv~GT-Pt~~--~~n--G~~v--~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1         106 DIADHYALGVQLGVSGT-PAVV--LSN--GTLV--PGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CHHHHHHHHHHHTCCSS-SEEE--CTT--SCEE--ESCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCcCC-CEEE--EeC--CeEe--cCCCCHHHHHHHHHHHHH
Confidence             0001456788999999 9863  322  2344  688999999999998653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.73  E-value=0.45  Score=34.76  Aligned_cols=54  Identities=11%  Similarity=0.093  Sum_probs=38.9

Q ss_pred             ceEEEEE--Eec-cchHHHHHHHHHHHHhhcCceEEEEEeCCCcccchhHHhhcCCC
Q 018164          121 KLQVYVF--AKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE  174 (360)
Q Consensus       121 ~~~v~f~--~~~-~~~~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~gi~  174 (360)
                      +++++||  ..| +.|..-.+.|++...+|+..+.++.|..+...-.+.+++.+++.
T Consensus        34 ~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~   90 (156)
T d2a4va1          34 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLP   90 (156)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCS
T ss_pred             cEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCcc
Confidence            4555554  457 88999999999999999877767777766544335667777763

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.14  E-value=0.92  Score=29.71  Aligned_cols=51  Identities=10%  Similarity=0.040  Sum_probs=33.6

Q ss_pred             EEEEeCCCCh------hhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCC-CCC-------CCCCCCCcEEEEEeCC
Q 018164          252 LLEVYTPWCV------TCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-------KLQVEEYPTLLFYPAG  312 (360)
Q Consensus       252 ~v~f~~~~c~------~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~~-------~~~i~~~Pti~~~~~g  312 (360)
                      ++.|++++|+      .|..+...++..        ++.+-.+|++.+ +..       ..+...+|.++  -+|
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~--------~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqif--v~~   68 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGN   68 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETT
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC--------CCceEEEEecCchhHHHHHHHhccCCCceeEEEE--ECC
Confidence            5668899996      677776666554        678889999876 221       12344678774  455

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.53  E-value=1.2  Score=28.80  Aligned_cols=43  Identities=9%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCEEEEEEeCCCCCCC----------------CCCCCCCcEEEE
Q 018164          258 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP----------------KLQVEEYPTLLF  308 (360)
Q Consensus       258 ~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~----------------~~~i~~~Pti~~  308 (360)
                      +.|++|.+....+.+.        ++.+..++++..+..                ..+..++|.|++
T Consensus        12 ~~C~~C~~AK~lL~~~--------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi   70 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA   70 (87)
T ss_dssp             SCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred             CCChhHHHHHHHHHHc--------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe
Confidence            4699999987666554        567777777665221                125678999954