Citrus Sinensis ID: 018168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MATFFMSRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVEDGKK
ccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEEEcEEEEcccEEEEEcccccccEEEEEEcccEEEEccccccEEEEEEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEccccEEEEEEEcccccEEEccccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEccccccccccEEEEEEEEccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccEEEccEEEEcccccEEEEEccccccEEEEEEcccEEcEccccccEcEEEEEEEEEcEcccccEEEEEEEccccccccccHHEccccccccHHHcccEEEEEEccccHHHccccccEEEEEEccccccccccccEEEEEEEccccEEEEEEEccccEEEEEEEcccccccccccEEEEEEccHHccccccEEEEEEccccccEcEEEEEEEEEcccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccc
MATFFMSRYFATLTLLIFHFQvlnadpsssfsfksfgkgshlesSIALygdakvvnggsvvQLTDSvsssagrvmykkpiklvegntgnlasfsTNFSFsmskengdgLAFIMVPsgfnlsvsantsfglspemdksKFRVVAVEfdtlrdvkygdvngnhvgiDVGSLVSVKVSNvsshnivlnsdkklnSWIDYEASSKRLEVRLSYldsakpvdpllsypidlsklwndEEVFVGLSssnrnssqicnLYSWsfklrhvphwmhsqpldpktfvknlktppqpppkrsdcLLKVLGALIFGTACGALGASIVLYLWTIfankrpvvpvtEECAVHLADFEYEKFKVLVDKAVEDGKK
MATFFMSRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTdsvsssagrvmykkpiklvegntgnLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFglspemdksKFRVVAVEFDTlrdvkygdvngnhVGIDVGSLVSVKVSNVSShnivlnsdkklnsWIDYEASSKRLEVRLSYLdsakpvdplLSYPIDLSKLWNDEEVFVGlsssnrnssQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVEDGKK
MATFFMSRYFATLTLLIFHFQVLNADPsssfsfksfgkgsHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDvgslvsvkvsnvssHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVEDGKK
**TFFMSRYFATLTLLIFHFQVLNAD******F**F*****LESSIALYGDAKVVNG**********************IKLVEGNTGNLASFSTNFSF******GDGLAFIMVPSGFNLSVSANTSFGLS***DKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQ**********************DCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDK*******
******SRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMV***************LSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLR************************************VLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVL**********
MATFFMSRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVEDGKK
*ATFFMSRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVP******PLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATFFMSRYFATLTLLIFHFQVLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDKAVEDGKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q9LYX1 711 L-type lectin-domain cont no no 0.672 0.340 0.389 2e-32
Q9FHG4 681 Probable L-type lectin-do no no 0.669 0.353 0.378 7e-31
Q9LFH9 715 L-type lectin-domain cont no no 0.652 0.328 0.379 6e-28
Q9M345 677 L-type lectin-domain cont no no 0.591 0.314 0.334 9e-24
Q9SZD5 669 L-type lectin-domain cont no no 0.755 0.406 0.291 1e-23
O81291 669 L-type lectin-domain cont no no 0.647 0.348 0.312 2e-23
O04534 666 Putative L-type lectin-do no no 0.638 0.345 0.325 7e-23
Q9M2S4 684 L-type lectin-domain cont no no 0.680 0.358 0.323 9e-23
Q9LSS0 668 L-type lectin-domain cont no no 0.744 0.401 0.319 1e-21
Q39529290 Agglutinin-2 OS=Cladrasti N/A no 0.655 0.813 0.330 2e-21
>sp|Q9LYX1|LRK82_ARATH L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana GN=LECRK82 PE=2 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/257 (38%), Positives = 149/257 (57%), Gaps = 15/257 (5%)

Query: 8   RYFATLTLLIFHFQ--VLNADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTD 65
           R+F+  + LI      + ++D    F    F  G+   SS+ L GDA + NG   ++LT 
Sbjct: 7   RFFSVYSTLIHILASFLCSSDVRGDFPATRFDLGTLTLSSLKLLGDAHLNNG--TIKLTR 64

Query: 66  SVS---SSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKEN----GDGLAFIMVPSGF 118
            +S   S+AG+ +Y KP+K     T + ASF+T FSFS++  N    G GLAF++ P   
Sbjct: 65  ELSVPTSTAGKALYGKPVKFRHPETKSPASFTTYFSFSVTNLNPSSIGGGLAFVISPDED 124

Query: 119 NLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVS 178
            L  S     GL+ E   S    VAVEFDTL DV++ DVNGNHVG+D+ ++VS  V+++ 
Sbjct: 125 YLG-STGGFLGLTEETG-SGSGFVAVEFDTLMDVQFKDVNGNHVGLDLNAVVSAAVADLG 182

Query: 179 SHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVG 238
           + +I L S   +NSWI Y+ S + L V +SY  + KP  P+LS P+DL +  +D  +FVG
Sbjct: 183 NVDIDLKSGNAVNSWITYDGSGRVLTVYVSY-SNLKPKSPILSVPLDLDRYVSD-SMFVG 240

Query: 239 LSSSNRNSSQICNLYSW 255
            S S + S++I ++  W
Sbjct: 241 FSGSTQGSTEIHSVDWW 257

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFH9|LRK81_ARATH L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1 Back     alignment and function description
>sp|Q9M345|LRK42_ARATH L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZD5|LRK59_ARATH L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1 Back     alignment and function description
>sp|O81291|LRK44_ARATH L-type lectin-domain containing receptor kinase IV.4 OS=Arabidopsis thaliana GN=LECRK44 PE=3 SV=1 Back     alignment and function description
>sp|O04534|LRK51_ARATH Putative L-type lectin-domain containing receptor kinase V.1 OS=Arabidopsis thaliana GN=LECRK51 PE=3 SV=1 Back     alignment and function description
>sp|Q9M2S4|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSS0|LRK17_ARATH L-type lectin-domain containing receptor kinase I.7 OS=Arabidopsis thaliana GN=LECRK17 PE=1 SV=1 Back     alignment and function description
>sp|Q39529|LEC2_CLAKE Agglutinin-2 OS=Cladrastis kentukea PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
224087641335 predicted protein [Populus trichocarpa] 0.883 0.949 0.683 1e-119
224138974355 predicted protein [Populus trichocarpa] 0.983 0.997 0.660 1e-118
255573927357 Agglutinin-2 precursor, putative [Ricinu 0.988 0.997 0.634 1e-111
225440572358 PREDICTED: L-type lectin-domain containi 0.994 1.0 0.594 1e-109
388512465359 unknown [Lotus japonicus] 0.988 0.991 0.506 2e-94
356568030358 PREDICTED: L-type lectin-domain containi 0.944 0.949 0.527 1e-90
356520975354 PREDICTED: L-type lectin-domain containi 0.952 0.968 0.518 1e-88
225449242343 PREDICTED: probable L-type lectin-domain 0.944 0.991 0.493 8e-79
356496132348 PREDICTED: putative inactive L-type lect 0.955 0.988 0.489 4e-77
357469061350 Lectin [Medicago truncatula] gi|35550587 0.930 0.957 0.453 1e-72
>gi|224087641|ref|XP_002308200.1| predicted protein [Populus trichocarpa] gi|222854176|gb|EEE91723.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/322 (68%), Positives = 258/322 (80%), Gaps = 4/322 (1%)

Query: 38  KGSHLESSIALYGDAKVVNGGSVVQLTDSVSSSAGRVMYKKPIKLVEGNTGNLASFSTNF 97
           K  + ESSIALYGDAKVV   S +QLT  VS SAGRVMYK+PIKLVEGN GNL SFST F
Sbjct: 17  KDPNFESSIALYGDAKVVGNSSSLQLTRPVSLSAGRVMYKQPIKLVEGNPGNLVSFSTYF 76

Query: 98  SFSMSKENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDV 157
           SF MS +NGDGLAF++VPSGFN SV  NT FGL    +KS  + VAVEFDT+RD K+GD+
Sbjct: 77  SFLMSPDNGDGLAFVVVPSGFNASVFDNTPFGLYLGPEKSSPKFVAVEFDTMRDAKFGDL 136

Query: 158 NGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVD 217
           N NHVGIDVG  VSVKV +VSS+N+VLNS K+L+SWIDYEA SK LEVRLS+    KP+D
Sbjct: 137 NDNHVGIDVGGFVSVKVRDVSSNNMVLNSGKRLHSWIDYEAGSKTLEVRLSHSGDIKPID 196

Query: 218 PLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFV 277
           PLLS+PIDLSK WNDE+V +GL+SSN NSSQ C L+SW+FKLR VP WMHSQPLDP+ F 
Sbjct: 197 PLLSHPIDLSKTWNDEKVLIGLTSSNGNSSQTCFLHSWNFKLRRVPLWMHSQPLDPQDFA 256

Query: 278 KNLKTPPQPPPKRSDCLLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAV 337
           K+ K  P    K+S C+LK+L A+IFGTACGA+GA +VLYLWTIF N+RPV+P  EEC+V
Sbjct: 257 KHEK--PMVVQKKSGCILKMLTAMIFGTACGAMGAFMVLYLWTIFGNRRPVMP--EECSV 312

Query: 338 HLADFEYEKFKVLVDKAVEDGK 359
              DFEY+K KV+VDKA+EDGK
Sbjct: 313 PPVDFEYKKVKVIVDKAIEDGK 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224138974|ref|XP_002322948.1| predicted protein [Populus trichocarpa] gi|222867578|gb|EEF04709.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573927|ref|XP_002527882.1| Agglutinin-2 precursor, putative [Ricinus communis] gi|223532733|gb|EEF34513.1| Agglutinin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440572|ref|XP_002276782.1| PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388512465|gb|AFK44294.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356568030|ref|XP_003552217.1| PREDICTED: L-type lectin-domain containing receptor kinase VIII.2-like [Glycine max] Back     alignment and taxonomy information
>gi|356520975|ref|XP_003529134.1| PREDICTED: L-type lectin-domain containing receptor kinase IV.4-like [Glycine max] Back     alignment and taxonomy information
>gi|225449242|ref|XP_002280264.1| PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496132|ref|XP_003516924.1| PREDICTED: putative inactive L-type lectin-domain containing receptor kinase III.2-like [Glycine max] Back     alignment and taxonomy information
>gi|357469061|ref|XP_003604815.1| Lectin [Medicago truncatula] gi|355505870|gb|AES87012.1| Lectin [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2150114353 AT5G01090 [Arabidopsis thalian 0.958 0.977 0.435 3.1e-67
TAIR|locus:504955733338 AT3G09035 [Arabidopsis thalian 0.877 0.934 0.423 6.8e-56
TAIR|locus:2095319345 AT3G09190 [Arabidopsis thalian 0.833 0.869 0.421 8e-53
TAIR|locus:2083986 715 AT3G53380 [Arabidopsis thalian 0.575 0.289 0.405 1.7e-32
TAIR|locus:2143528 711 AT5G03140 [Arabidopsis thalian 0.577 0.292 0.407 9.5e-32
TAIR|locus:2080255350 AT3G54080 "AT3G54080" [Arabido 0.316 0.325 0.4 5.9e-28
TAIR|locus:2162212 681 AT5G55830 [Arabidopsis thalian 0.583 0.308 0.377 8.6e-28
TAIR|locus:2084375 677 AT3G53810 [Arabidopsis thalian 0.686 0.364 0.301 3e-23
TAIR|locus:2119936 669 AT4G29050 [Arabidopsis thalian 0.766 0.412 0.284 3.7e-23
TAIR|locus:2165740 691 AT5G42120 [Arabidopsis thalian 0.508 0.264 0.385 6.5e-23
TAIR|locus:2150114 AT5G01090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 158/363 (43%), Positives = 211/363 (58%)

Query:     1 MATFFMSRYFATLTLLIFHFQVLNADPXXXXXXXXXXXXXHLESSIALYGDAKVVNGGSV 60
             MA F    +   L+++I+   V   D                ++++AL+GD+K+V+GG  
Sbjct:     1 MAVFKTLAFLFVLSIVIYQ-SVAVTDVNSSFSFNGFVKAPSFDNNVALFGDSKLVHGGPS 59

Query:    61 VQLTDSVSSSAGRVMYKKPIKLVEGNTGNLA-SFSTNFSFSMSKENGDGLAFIMVPSGFN 119
             +QLTDSVS S GRV+YKKPI+L +G   N + SFST+FSFSMS E G  LAFIMVP G +
Sbjct:    60 IQLTDSVSRSEGRVIYKKPIRLFQGKERNFSGSFSTSFSFSMSDEIGSVLAFIMVPRGLD 119

Query:   120 LSVSA----NTSFGLSPEMDKSKFRVVAVEFDTLRDVKYGDVNGNHVGIDXXXXXXXXXX 175
             L +      N+S GL   +   K +VVAVEF   +        GNHVGI           
Sbjct:   120 LRLFGRKGNNSSSGLGFLL---KHKVVAVEFGISK-------RGNHVGILVGRPESGKVR 169

Query:   176 XXXXHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEV 235
                      N +K+LN WIDYEASSKR+EVRLS   + KPVDP +SY +DL+KLW D + 
Sbjct:   170 KLSSFGHHFNEEKRLNCWIDYEASSKRIEVRLSLSAALKPVDPFVSYSVDLAKLWKDGKF 229

Query:   236 FVGLSSSNRNSSQICNLYSWSFKLRHVPHWMHSQPLDPKTFVKNLKTPPQPPPKRSD--C 293
              VGL+S+N N+S+   L+SWSFKLRH    +HSQPLDP    K +K   +    +    C
Sbjct:   230 MVGLTSANGNTSKPVYLHSWSFKLRHPSMRIHSQPLDPNDVSKTVKEGEKTVEVKGKGKC 289

Query:   294 LLKVLGALIFGTACGALGASIVLYLWTIFANKRPVVPVTEECAVHLADFEYEKFKVLVDK 353
             + ++LGAL+ G  CG LGA   LYLWTI  N++ +  V EECA   AD    K  V+V++
Sbjct:   290 IWRILGALVLGAVCGTLGAMFALYLWTICGNRQSMAIVPEECADEKADILVTKADVVVEE 349

Query:   354 AVE 356
              V+
Sbjct:   350 EVK 352
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030246 "carbohydrate binding" evidence=ISS
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:504955733 AT3G09035 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095319 AT3G09190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083986 AT3G53380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143528 AT5G03140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080255 AT3G54080 "AT3G54080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162212 AT5G55830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084375 AT3G53810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119936 AT4G29050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165740 AT5G42120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000762
hypothetical protein (335 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd06899236 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume 1e-83
pfam00139231 pfam00139, Lectin_legB, Legume lectin domain 1e-67
cd01951223 cd01951, lectin_L-type, legume lectins 5e-24
>gnl|CDD|173887 cd06899, lectin_legume_LecRK_Arcelin_ConA, legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information 
 Score =  253 bits (648), Expect = 1e-83
 Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 13/240 (5%)

Query: 30  SFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLT--DSVSSSAGRVMYKKPIKLVEGNT 87
           SF+F  F       S++ L GDA + + G  +QLT   S +SS GR +Y KP++L +  T
Sbjct: 2   SFNFNGFSSDQ---SNLTLQGDATISSNG-ALQLTNDTSPASSVGRALYSKPVRLWDSTT 57

Query: 88  GNLASFSTNFSFSMSKEN----GDGLAFIMVPSGFNLSVSANTSFGLSPE--MDKSKFRV 141
           G +ASFST+FSFS++  N    GDGLAF + P+      S+    GL        S   +
Sbjct: 58  GKVASFSTSFSFSITPPNPSLGGDGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHI 117

Query: 142 VAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSK 201
           VAVEFDT ++ ++GD + NHVGIDV SLVSVK          L S K + +WIDY++SSK
Sbjct: 118 VAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDDDGGKLKSGKPMQAWIDYDSSSK 177

Query: 202 RLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWSFKLRH 261
           RL V L+Y   AKP  PLLSYP+DLSK+   EEV+VG S+S    +++  + SWSF    
Sbjct: 178 RLSVTLAYSGVAKPKKPLLSYPVDLSKVLP-EEVYVGFSASTGLLTELHYILSWSFSSNG 236

This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by binding glycans on the cell surface. Medically, PHA is used as a mitogen to trigger cell division in T-lymphocytes and to activate latent HIV-1 from human peripheral lymphocytes. Plant L-type lectins are primarily found in the seeds of leguminous plants where they constitute about 10% of the total soluble protein of the seed extracts. They are synthesized during seed development several weeks after flowering and transported to the vacuole where they become condensed into specialized vesicles called protein bodies. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Length = 236
>gnl|CDD|215744 pfam00139, Lectin_legB, Legume lectin domain Back     alignment and domain information
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
cd06899236 lectin_legume_LecRK_Arcelin_ConA legume lectins, l 100.0
PF00139236 Lectin_legB: Legume lectin domain; InterPro: IPR00 100.0
cd01951223 lectin_L-type legume lectins. The L-type (legume-t 100.0
cd07308218 lectin_leg-like legume-like lectins: ERGIC-53, ERG 99.92
cd06902225 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 tran 99.83
cd06901248 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembr 99.83
cd06903215 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmem 99.73
PF03388229 Lectin_leg-like: Legume-like lectin family; InterP 99.69
KOG3839351 consensus Lectin VIP36, involved in the transport 99.46
KOG3838 497 consensus Mannose lectin ERGIC-53, involved in gly 99.45
cd06900255 lectin_VcfQ VcfQ bacterial pilus biogenesis protei 99.03
cd00110151 LamG Laminin G domain; Laminin G-like domains are 85.37
KOG3514 1591 consensus Neurexin III-alpha [Signal transduction 84.91
smart00282135 LamG Laminin G domain. 84.12
PF07010259 Endomucin: Endomucin; InterPro: IPR010740 This fam 83.45
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 81.34
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.8e-55  Score=411.49  Aligned_cols=223  Identities=46%  Similarity=0.741  Sum_probs=201.3

Q ss_pred             eeeEeCCCCCCCCCccCeEEecceEEecCCcEEEeCCCC--CCceEEEEecCCeeeecCCCCCceeeEEEEEEEEecc--
Q 018168           29 SSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSV--SSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSMSKE--  104 (360)
Q Consensus        29 ~sF~f~~F~~~~~~~~~l~l~GdA~v~~~g~~l~LT~~~--~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I~~~--  104 (360)
                      .+|+|++|..+   .++|+|+|+|.+.+++ .||||++.  .+++|||||++||+||++.+++++||+|+|+|.|.++  
T Consensus         1 ~~f~f~~f~~~---~~~l~l~G~A~~~~~~-~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~   76 (236)
T cd06899           1 LSFNFNGFSSD---QSNLTLQGDATISSNG-ALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNP   76 (236)
T ss_pred             CceecCCCCCC---CCCEEEecceEcCCCC-eEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCC
Confidence            47999999864   2599999999998555 69999998  8999999999999999999999999999999999863  


Q ss_pred             --CCCceEEEEecCCCCcCCCCCCCCCCCCCCCC------CCccEEEEEEeeccccccCCCCCCeeEEecCCcccceecc
Q 018168          105 --NGDGLAFIMVPSGFNLSVSANTSFGLSPEMDK------SKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSN  176 (360)
Q Consensus       105 --~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n------~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins~~S~~~~~  176 (360)
                        +||||||+|+|+...+    .+..|++|||.+      ..++.|||||||++|.+++||++||||||+|++.|..+..
T Consensus        77 ~~~gdGlAF~i~~~~~~~----~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~  152 (236)
T cd06899          77 SLGGDGLAFFLAPTDSLP----PASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGY  152 (236)
T ss_pred             CCCCCeEEEEEecCCCCC----CCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeec
Confidence              7999999999987432    256799999975      3468999999999999989999999999999999888877


Q ss_pred             ccccceeecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEeecCCccceeEEEEEE
Q 018168          177 VSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLYSWS  256 (360)
Q Consensus       177 ~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSAsTG~~~~~h~I~sWs  256 (360)
                      +....+.|.+|+.++|||+||+.+++|+|+|++.+..||..|+|++.+||+.+|++ +|||||||+||+..|.|+|++|+
T Consensus       153 ~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~-~~~vGFSasTG~~~~~h~i~sWs  231 (236)
T cd06899         153 WDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPE-EVYVGFSASTGLLTELHYILSWS  231 (236)
T ss_pred             cccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCC-ceEEEEEeEcCCCcceEEEEEEE
Confidence            76656678999999999999999999999999987778999999999999999998 99999999999999999999999


Q ss_pred             EEec
Q 018168          257 FKLR  260 (360)
Q Consensus       257 F~~~  260 (360)
                      |++.
T Consensus       232 F~s~  235 (236)
T cd06899         232 FSSN  235 (236)
T ss_pred             EEcC
Confidence            9875

This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported Back     alignment and domain information
>cd01951 lectin_L-type legume lectins Back     alignment and domain information
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47 Back     alignment and domain information
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain Back     alignment and domain information
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain Back     alignment and domain information
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates Back     alignment and domain information
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms] Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1hql_A257 The Xenograft Antigen In Complex With The B4 Isolec 4e-15
1gnz_A257 Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)m 4e-15
1wbf_A242 Winged Bean Lectin, Saccharide Free Form Length = 2 5e-14
2e7q_A237 Crystal Structure Of Basic Winged Bean Lectin In Co 6e-14
1wbl_A241 Winged Bean Lectin Complexed With Methyl-Alpha-D-Ga 6e-14
3zvx_A261 Structure Of The Lectin From Platypodium Elegans In 1e-13
1n3o_A252 Pterocarcpus Angolensis Lectin In Complex With Alph 1e-13
1q8o_A252 Pterocartpus Angolensis Lectin Pal In Complex With 1e-13
1fny_A237 Legume Lectin Of The Bark Of Robinia Pseudoacacia. 2e-13
2fmd_A240 Structural Basis Of Carbohydrate Recognition By Bow 8e-13
1fay_A238 Winged Bean Acidic Lectin Complexed With Methyl-Alp 1e-12
1gsl_A243 Lectin (Fourth Isolated From (Griffonia Simplicifol 2e-12
3ipv_B239 Crystal Structure Of Spatholobus Parviflorus Seed L 2e-12
1gz9_A239 High-Resolution Crystal Structure Of Erythrina Cris 3e-12
3ipv_A251 Crystal Structure Of Spatholobus Parviflorus Seed L 4e-12
3usu_A256 Crystal Structure Of Butea Monosperma Seed Lectin L 5e-12
3usu_B242 Crystal Structure Of Butea Monosperma Seed Lectin L 5e-12
1qnw_A242 Lectin Ii From Ulex Europaeus Length = 242 8e-12
1lte_A239 Structure Of A Legume Lectin With An Ordered N-Link 2e-11
1sfy_A239 Crystal Structure Of Recombinant Erythrina Corallod 2e-11
3n35_A242 Erythrina Corallodendron Lectin Mutant (Y106g) With 2e-11
1ax0_A239 Erythrina Corallodendron Lectin In Complex With N-A 2e-11
1fyu_A255 Crystal Structure Of Erythrina Corallodendron Lecti 2e-11
1uzy_A242 Erythrina Crystagalli Lectin Length = 242 3e-11
2eig_A234 Lotus Tetragonolobus Seed Lectin (Isoform) Length = 3e-11
1bzw_A232 Peanut Lectin Complexed With C-Lactose Length = 232 4e-11
2pel_A236 Peanut Lectin Length = 236 4e-11
1loa_A181 Three-Dimensional Structures Of Complexes Of Lathyr 2e-10
1fat_A252 Phytohemagglutinin-L Length = 252 3e-10
1g8w_A233 Improved Structure Of Phytohemagglutinin-L From The 3e-10
2bqp_A234 The Structure Of The Pea Lectin-D-Glucopyranose Com 3e-10
1lof_C181 X-Ray Structure Of A Biantennary Octasaccharide-Lec 3e-10
2sba_A253 Soybean Agglutinin Complexed With 2,6-Pentasacchari 5e-10
1lgb_A181 Interaction Of A Legume Lectin With The N2 Fragment 6e-10
1lgc_A181 Interaction Of A Legume Lectin With The N2 Fragment 8e-10
2lal_A181 Crystal Structure Determination And Refinement At 2 1e-09
1fx5_A242 Crystal Structure Analysis Of Ulex Europaeus Lectin 1e-09
1dbn_A239 Maackia Amurensis Leukoagglutinin (Lectin) With Sia 1e-09
1bjq_A253 The Dolichos Biflorus Seed Lectin In Complex With A 1e-09
1ofs_A187 Pea Lectin-sucrose Complex Length = 187 2e-09
2ltn_A181 Design, Expression, And Crystallization Of Recombin 2e-09
1n47_A233 Isolectin B4 From Vicia Villosa In Complex With The 3e-09
1rin_A180 X-Ray Crystal Structure Of A Pea Lectin-Trimannosid 3e-09
2b7y_A182 Fava Bean Lectin-Glucose Complex Length = 182 5e-09
1viw_B205 Tenebrio Molitor Alpha-Amylase-Inhibitor Complex Le 1e-08
1dhk_B223 Structure Of Porcine Pancreatic Alpha-Amylase Lengt 1e-08
1avb_A226 Arcelin-1 From Phaseolus Vulgaris L Length = 226 2e-08
1lul_A253 Db58, A Legume Lectin From Dolichos Biflorus Length 2e-08
3ujo_A281 Galactose-Specific Seed Lectin From Dolichos Lablab 5e-08
1qmo_E133 Structure Of Fril, A Legume Lectin That Delays Hema 4e-07
1ioa_A240 Arcelin-5, A Lectin-Like Defense Protein From Phase 1e-06
1wuv_A237 Crystal Structure Of Native Canavalia Gladiata Lect 4e-04
3u4x_A236 Crystal Structure Of A Lectin From Camptosema Pedic 5e-04
2zbj_A237 Crystal Structure Of Dioclea Rostrata Lectin Length 5e-04
2je9_A239 Crystal Structure Of Recombinant Dioclea Grandiflor 7e-04
2jec_A239 Crystal Structure Of Recombinant Dioclea Grandiflor 8e-04
3sh3_A237 Crystal Structure Of A Pro-Inflammatory Lectin From 8e-04
2gdf_A237 Crystal Structure Of Dioclea Violacea Seed Lectin L 8e-04
2d3p_A236 Cratylia Floribunda Seed Lectin Crystallized At Bas 8e-04
1mvq_A236 Cratylia Mollis Lectin (Isoform 1) In Complex With 9e-04
>pdb|1HQL|A Chain A, The Xenograft Antigen In Complex With The B4 Isolectin Of Griffonia Simplicifolia Lectin-1 Length = 257 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 42  LESSIALYGDAKVVNGGSVVQLTDSVSS----SAGRVMYKKPIKLVEGNTGNLASFSTNF 97
           +E SI   GDA    G   +  T+   +    SAGR +Y  P++L +  T ++ASF T F
Sbjct: 16  VEDSIIFQGDANTTAGTLQLCKTNQYGTPLQWSAGRALYSDPVQLWDNKTESVASFYTEF 75
Query: 98  SFSMS-KENG--DGLAFIMVPSGFNLSVSANTSFGL---SPEMDKSKFRVVAVEFDTLRD 151
           +F +    NG  DGLAF + P   ++   A    GL   S     SK +VVAVEFDT  +
Sbjct: 76  TFFLKITGNGPADGLAFFLAPPDSDVK-DAGEYLGLFNKSTATQPSKNQVVAVEFDTWTN 134
Query: 152 VKYGDVNGNHVGIDXXXXXXXXXXXXXXHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLD 211
             + + +  H+GI+               +I   S K   + I Y+ S++ L V LSY D
Sbjct: 135 PNFPEPSYRHIGINVNSIVSVATKRWEDSDIF--SGKIATARISYDGSAEILTVVLSYPD 192
Query: 212 SAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNSSQICNLY--SWSF 257
            +   D +LS+ +D+ +    E V VG+S+S  N +Q   +Y  SW F
Sbjct: 193 GS---DYILSHSVDMRQNL-PESVRVGISASTGN-NQFLTVYILSWRF 235
>pdb|1GNZ|A Chain A, Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)metal Free Form Length = 257 Back     alignment and structure
>pdb|1WBF|A Chain A, Winged Bean Lectin, Saccharide Free Form Length = 242 Back     alignment and structure
>pdb|2E7Q|A Chain A, Crystal Structure Of Basic Winged Bean Lectin In Complex With B Blood Group Trisaccharide Length = 237 Back     alignment and structure
>pdb|1WBL|A Chain A, Winged Bean Lectin Complexed With Methyl-Alpha-D-Galactose Length = 241 Back     alignment and structure
>pdb|3ZVX|A Chain A, Structure Of The Lectin From Platypodium Elegans In Complex With A Trimannoside Length = 261 Back     alignment and structure
>pdb|1N3O|A Chain A, Pterocarcpus Angolensis Lectin In Complex With Alpha-Methyl Glucose Length = 252 Back     alignment and structure
>pdb|1Q8O|A Chain A, Pterocartpus Angolensis Lectin Pal In Complex With The Dimmanoside Man(Alpha1-2)man Length = 252 Back     alignment and structure
>pdb|1FNY|A Chain A, Legume Lectin Of The Bark Of Robinia Pseudoacacia. Length = 237 Back     alignment and structure
>pdb|2FMD|A Chain A, Structural Basis Of Carbohydrate Recognition By Bowringia Milbraedii Seed Agglutinin Length = 240 Back     alignment and structure
>pdb|1FAY|A Chain A, Winged Bean Acidic Lectin Complexed With Methyl-Alpha-D-Galactose (Monoclinic Form) Length = 238 Back     alignment and structure
>pdb|1GSL|A Chain A, Lectin (Fourth Isolated From (Griffonia Simplicifolia)) Complex With Y Human Blood Group Determinant Length = 243 Back     alignment and structure
>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 239 Back     alignment and structure
>pdb|1GZ9|A Chain A, High-Resolution Crystal Structure Of Erythrina Cristagalli Lectin In Complex With 2'-Alpha-L-Fucosyllactose Length = 239 Back     alignment and structure
>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin Length = 251 Back     alignment and structure
>pdb|3USU|A Chain A, Crystal Structure Of Butea Monosperma Seed Lectin Length = 256 Back     alignment and structure
>pdb|3USU|B Chain B, Crystal Structure Of Butea Monosperma Seed Lectin Length = 242 Back     alignment and structure
>pdb|1QNW|A Chain A, Lectin Ii From Ulex Europaeus Length = 242 Back     alignment and structure
>pdb|1LTE|A Chain A, Structure Of A Legume Lectin With An Ordered N-Linked Carbohydrate In Complex With Lactose Length = 239 Back     alignment and structure
>pdb|1SFY|A Chain A, Crystal Structure Of Recombinant Erythrina Corallodandron Lectin Length = 239 Back     alignment and structure
>pdb|3N35|A Chain A, Erythrina Corallodendron Lectin Mutant (Y106g) With N- Acetylgalactosamine Length = 242 Back     alignment and structure
>pdb|1AX0|A Chain A, Erythrina Corallodendron Lectin In Complex With N-Actylgalactosamine Length = 239 Back     alignment and structure
>pdb|1FYU|A Chain A, Crystal Structure Of Erythrina Corallodendron Lectin In Hexagonal Crystal Form Length = 255 Back     alignment and structure
>pdb|1UZY|A Chain A, Erythrina Crystagalli Lectin Length = 242 Back     alignment and structure
>pdb|2EIG|A Chain A, Lotus Tetragonolobus Seed Lectin (Isoform) Length = 234 Back     alignment and structure
>pdb|1BZW|A Chain A, Peanut Lectin Complexed With C-Lactose Length = 232 Back     alignment and structure
>pdb|2PEL|A Chain A, Peanut Lectin Length = 236 Back     alignment and structure
>pdb|1LOA|A Chain A, Three-Dimensional Structures Of Complexes Of Lathyrus Ochrus Isolectin I With Glucose And Mannose: Fine Specificity Of The Monosaccharide-Binding Site Length = 181 Back     alignment and structure
>pdb|1FAT|A Chain A, Phytohemagglutinin-L Length = 252 Back     alignment and structure
>pdb|1G8W|A Chain A, Improved Structure Of Phytohemagglutinin-L From The Kidney Bean Length = 233 Back     alignment and structure
>pdb|2BQP|A Chain A, The Structure Of The Pea Lectin-D-Glucopyranose Complex Length = 234 Back     alignment and structure
>pdb|1LOF|C Chain C, X-Ray Structure Of A Biantennary Octasaccharide-Lectin Complex At 2.3 Angstroms Resolution Length = 181 Back     alignment and structure
>pdb|2SBA|A Chain A, Soybean Agglutinin Complexed With 2,6-Pentasaccharide Length = 253 Back     alignment and structure
>pdb|1LGB|A Chain A, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 181 Back     alignment and structure
>pdb|1LGC|A Chain A, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 181 Back     alignment and structure
>pdb|2LAL|A Chain A, Crystal Structure Determination And Refinement At 2.3 Angstroms Resolution Of The Lentil Lectin Length = 181 Back     alignment and structure
>pdb|1FX5|A Chain A, Crystal Structure Analysis Of Ulex Europaeus Lectin I Length = 242 Back     alignment and structure
>pdb|1DBN|A Chain A, Maackia Amurensis Leukoagglutinin (Lectin) With Sialyllactose Length = 239 Back     alignment and structure
>pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine Length = 253 Back     alignment and structure
>pdb|1OFS|A Chain A, Pea Lectin-sucrose Complex Length = 187 Back     alignment and structure
>pdb|2LTN|A Chain A, Design, Expression, And Crystallization Of Recombinant Lectin From The Garden Pea (Pisum Sativum) Length = 181 Back     alignment and structure
>pdb|1N47|A Chain A, Isolectin B4 From Vicia Villosa In Complex With The Tn Antigen Length = 233 Back     alignment and structure
>pdb|1RIN|A Chain A, X-Ray Crystal Structure Of A Pea Lectin-Trimannoside Complex At 2.6 Angstroms Resolution Length = 180 Back     alignment and structure
>pdb|2B7Y|A Chain A, Fava Bean Lectin-Glucose Complex Length = 182 Back     alignment and structure
>pdb|1VIW|B Chain B, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex Length = 205 Back     alignment and structure
>pdb|1DHK|B Chain B, Structure Of Porcine Pancreatic Alpha-Amylase Length = 223 Back     alignment and structure
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L Length = 226 Back     alignment and structure
>pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus Length = 253 Back     alignment and structure
>pdb|3UJO|A Chain A, Galactose-Specific Seed Lectin From Dolichos Lablab In Complex With Adenine And Galactose Length = 281 Back     alignment and structure
>pdb|1QMO|E Chain E, Structure Of Fril, A Legume Lectin That Delays Hematopoietic Progenitor Maturation Length = 133 Back     alignment and structure
>pdb|1IOA|A Chain A, Arcelin-5, A Lectin-Like Defense Protein From Phaseolus Vulgaris Length = 240 Back     alignment and structure
>pdb|1WUV|A Chain A, Crystal Structure Of Native Canavalia Gladiata Lectin (Cgl): A Tetrameric Cona-Like Lectin Length = 237 Back     alignment and structure
>pdb|3U4X|A Chain A, Crystal Structure Of A Lectin From Camptosema Pedicellatum Seeds In Complex With 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose Length = 236 Back     alignment and structure
>pdb|2ZBJ|A Chain A, Crystal Structure Of Dioclea Rostrata Lectin Length = 237 Back     alignment and structure
>pdb|2JE9|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Complexed With 5-Bromo-4-Chloro-3-Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|2JEC|A Chain A, Crystal Structure Of Recombinant Dioclea Grandiflora Lectin Mutant E123a-H131n-K132q Complexed With 5-Bromo-4-Chloro-3- Indolyl-A-D-Mannose Length = 239 Back     alignment and structure
>pdb|3SH3|A Chain A, Crystal Structure Of A Pro-Inflammatory Lectin From The Seeds Of Dioclea Wilsonii Standl Length = 237 Back     alignment and structure
>pdb|2GDF|A Chain A, Crystal Structure Of Dioclea Violacea Seed Lectin Length = 237 Back     alignment and structure
>pdb|2D3P|A Chain A, Cratylia Floribunda Seed Lectin Crystallized At Basic Ph Length = 236 Back     alignment and structure
>pdb|1MVQ|A Chain A, Cratylia Mollis Lectin (Isoform 1) In Complex With Methyl-Alpha-D- Mannose Length = 236 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 5e-47
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 1e-46
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 2e-46
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 2e-46
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 1e-45
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 9e-44
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 1e-43
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 2e-43
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 6e-43
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 6e-43
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 6e-43
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 9e-42
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 2e-41
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 4e-41
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 5e-41
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 3e-40
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 4e-40
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 5e-40
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 9e-39
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 2e-38
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 3e-38
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 7e-36
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 1e-34
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 7e-26
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 2e-08
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 3e-25
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 4e-16
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 9e-12
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 2e-09
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 4e-04
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Length = 232 Back     alignment and structure
 Score =  158 bits (401), Expect = 5e-47
 Identities = 74/236 (31%), Positives = 111/236 (47%), Gaps = 19/236 (8%)

Query: 28  SSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLT-DSVSSSAGRVMYKKPIKLVEGN 86
           + SF+F SF +G+    +I   GD  V++ G  +QLT  +  +S GRV+Y  P+++    
Sbjct: 3   TVSFNFNSFSEGN---PAINFQGDVTVLSNG-NIQLTNLNKVNSVGRVLYAMPVRIWSSA 58

Query: 87  TGNLASFSTNFSFSMSKEN----GDGLAFIMVPSGFNLSVSANTSFGLSPEMDKSKFRVV 142
           TGN+ASF T+FSF M         DG+ F + P    +   +     L     K     V
Sbjct: 59  TGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFV 118

Query: 143 AVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKR 202
            VEFDT  + +Y D   +HVGIDV S+ SVK    +       S   +   + Y++S+K 
Sbjct: 119 GVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWN-----SVSGAVVKVTVIYDSSTKT 173

Query: 203 LEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSN-RNSSQICNLYSWSF 257
           L V ++           ++  +DL      E V  G S+S      QI  + SWSF
Sbjct: 174 LSVAVTN---DNGDITTIAQVVDLKAKLP-ERVKFGFSASGSLGGRQIHLIRSWSF 225
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Length = 253 Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Length = 234 Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Length = 253 Back     alignment and structure
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Length = 251 Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Length = 234 Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Length = 257 Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Length = 242 Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Length = 243 Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Length = 238 Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Length = 261 Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Length = 239 Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Length = 181 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Length = 237 Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Length = 252 Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Length = 233 Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Length = 239 Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Length = 242 Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Length = 242 Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Length = 240 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 226 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Length = 223 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Length = 240 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Length = 237 Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 133 Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Length = 113 Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Length = 260 Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Length = 253 Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Length = 52 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
3ujo_A281 Legume lectin; carbohydrate-binding, galactose, ad 100.0
3ipv_A251 Lectin alpha chain; galactose binding, SEED lectin 100.0
3zyr_A261 Lectin; sugar binding protein, N-glycan; HET: NAG 100.0
1v6i_A232 Agglutinin, PNA, galactose-binding lectin; open qu 100.0
1dbn_A239 MAL, protein (leukoagglutinin); plant lectin, carb 100.0
1fny_A237 BARK lectin, BARK agglutinin I,polypeptide A; legu 100.0
1fx5_A242 UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HO 100.0
1gzc_A239 Erythrina crista-galli lectin; carbohydrate, sugar 100.0
1qnw_A242 Chitin binding lectin, UEA-II; carbohydrate bindin 100.0
2eig_A234 Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG bin 100.0
2bqp_A234 Protein (PEA lectin); D-glucopyranose complex, sug 100.0
1hql_A257 Lectin; xenograft antigen, sugar BI protein; HET: 100.0
1sbf_A253 Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {G 100.0
2fmd_A240 Lectin, agglutinin, BMA; legume lectin, beta sandw 100.0
1wbf_A242 Protein (agglutinin); lectin (agglutinin), legume 100.0
1g7y_A253 Stem/LEAF lectin DB58; jelly roll fold, sugar bind 100.0
1fat_A252 Phytohemagglutinin-L; glycoprotein, plant defense 100.0
1f9k_A238 Acidic lectin; legume lectin, glycosylated protein 100.0
1gsl_A243 Griffonia simplicifolia lectin 4; glycoprotein, ma 100.0
1n47_A233 Isolectin B4; cancer antigen, vicia villosa lectin 100.0
1avb_A226 Arcelin-1; lectin-like glycoprotein, plant defense 100.0
1ioa_A240 Arcelin-5A, ARC5A; lectin-like proteins, plant def 100.0
1dhk_B223 Bean lectin-like inhibitor, porcine pancreatic alp 100.0
2ltn_A181 PEA lectin, alpha chain; 1.70A {Pisum sativum} SCO 100.0
2dur_A253 VIP36;, vesicular integral-membrane protein VIP36; 100.0
1qmo_E133 Mannose binding lectin, FRIL; crosslink, hematopoi 100.0
1gv9_A260 P58/ergic-53; lectin, carbohydrate binding; 1.46A 100.0
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 100.0
2a6y_A256 EMP47P (FORM1); beta sandwich, carbohydrate bindin 99.95
1qmo_A113 Mannose binding lectin, FRIL; crosslink, hematopoi 99.92
2a6z_A222 EMP47P (FORM2); beta sandwich, carbohydrate bindin 99.88
1nls_A237 Concanavalin A; lectin, agglutinin; 0.94A {Canaval 99.87
2a6v_A226 EMP46P; beta sandwich, carbohydrate binding protei 99.73
2ltn_B52 PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP 99.47
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 89.22
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 87.86
3v64_A191 Low-density lipoprotein receptor-related protein; 86.8
>3ujo_A Legume lectin; carbohydrate-binding, galactose, adenine binding protein; HET: ADE GAL; 2.00A {Dolichos lablab} PDB: 3ujq_A* 3uk9_A* 3ul2_A* 1fat_A* 1g8w_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-60  Score=450.07  Aligned_cols=233  Identities=29%  Similarity=0.465  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHHhh--cCCCceeeEeCCCCCCCCCccCeEEecceEEecCCcEEEeCCCCCC------ceEEEEecCCee
Q 018168           10 FATLTLLIFHFQVL--NADPSSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSVSS------SAGRVMYKKPIK   81 (360)
Q Consensus        10 ~~~~~~~~~~~~~~--~~~~~~sF~f~~F~~~~~~~~~l~l~GdA~v~~~g~~l~LT~~~~~------~~G~v~y~~Pi~   81 (360)
                      |+++.+.+|++++.  .++...+|+|++|..     ++|+|+|||.+. +| .||||+...+      ++|||+|++||+
T Consensus         6 ~~~~~~~~fl~l~~~~~sa~~~sF~f~~F~~-----~nL~l~GdA~i~-~g-~L~LT~~~~~~~p~~~s~Gra~Y~~Pi~   78 (281)
T 3ujo_A            6 FTMKRIVLFLILLTKAASANLISFTFKKFNE-----TNLILQRDATVS-SG-KLRITKAAENGVPTAGSLGRAFYSTPIQ   78 (281)
T ss_dssp             ------------------CEEEEEEESSCCS-----TTEEECSSCCCB-TT-BEECSCCCSSCCCCSSCEEEEEESSCEE
T ss_pred             HHHHHHHHHHHHHcccCcCCcceEEcCCCCc-----cCEEEecceEEe-CC-EEEeCCCCCCCcccCCceEEEEECCCEE
Confidence            34444434443333  345678999999973     599999999998 55 5999998755      999999999999


Q ss_pred             eecCCCCCceeeEEEEEEEEecc----CCCceEEEEecCCCCcCCCCCCCCCCCCCCCC-----CCccEEEEEEeecccc
Q 018168           82 LVEGNTGNLASFSTNFSFSMSKE----NGDGLAFIMVPSGFNLSVSANTSFGLSPEMDK-----SKFRVVAVEFDTLRDV  152 (360)
Q Consensus        82 l~~~~~~~~aSFsT~F~F~I~~~----~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n-----~~~~~vAVEFDT~~n~  152 (360)
                      ||++.+++++||+|+|+|.|.+.    +||||||+|+|.+..     .+..||||||.|     ..+++|||||||++|.
T Consensus        79 l~d~~tg~vaSFsTsFsF~I~~~~~~~~gdGlAF~laP~~~~-----p~~~gg~LGL~n~~~~~~~n~~vAVEFDT~~N~  153 (281)
T 3ujo_A           79 IWDNTTGTVASWATSFTFNLQAPNAASPADGLAFALVPVGSQ-----PKDKGGFLGLFDSKNYASSNQTVAVEFDTFYNG  153 (281)
T ss_dssp             CBCSSSCCBEEEEEEEEEECCCSSTTSCCEEEEEEEEETTCC-----CCCCGGGTTTCSCSSCCTTSCCEEEEECCSCCC
T ss_pred             cccCCCCCceeEEEEEEEEEecCCCCCCCCceEEEEecCCCC-----CCCCcceeeeccccCCCccCcEEEEEEeccccc
Confidence            99999999999999999999863    799999999998743     235689999986     4579999999999998


Q ss_pred             ccCCCCCCeeEEecCCcccceeccccccceeecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCC
Q 018168          153 KYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWND  232 (360)
Q Consensus       153 ~~~Dp~~nHVgIdins~~S~~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~  232 (360)
                      ++ ||++||||||+||+.|.++.+|     .+.+|+.++|||+||+.+++|+|+|.+.+.  |.+|+|++.+||+++|+|
T Consensus       154 e~-Dp~~nHVGIDvNSi~S~~t~~~-----~l~~G~~~~vwI~Yd~~tk~L~V~l~~~~~--~~~~~lS~~vDL~~~L~e  225 (281)
T 3ujo_A          154 GW-DPTERHIGIDVNSIKSIKTTSW-----DFANGENAEVLITYDSSTNLLVASLVHPSQ--KTSFIVSERVDLTSVLPE  225 (281)
T ss_dssp             SS-CCSSSEEEEEESSSCCSCEEEC-----CCCSSCCEEEEEEECTTTCEEEEEEECTTT--CCCEEEEEECCSTTTSCS
T ss_pred             cC-CCCCCeEEEEcCCCCccccccc-----cccCCCEEEEEEEEeCCCCEEEEEEecCCC--CCCceEEEEechHHhccC
Confidence            87 9999999999999999988776     367999999999999999999999998754  557999999999999998


Q ss_pred             CceEEEEEeecCC---ccceeEEEEEEEEecCCC
Q 018168          233 EEVFVGLSSSNRN---SSQICNLYSWSFKLRHVP  263 (360)
Q Consensus       233 ~~~yvGFSAsTG~---~~~~h~I~sWsF~~~~~p  263 (360)
                       +||||||||||.   ..|.|+|++|+|+++..+
T Consensus       226 -~v~VGFSAsTG~~~~~~e~H~IlsWSFss~l~~  258 (281)
T 3ujo_A          226 -WVSVGFSATTGLSKGYVETNEVLSWSFASKLSI  258 (281)
T ss_dssp             -EEEEEEEEEECSSTTSCCCCEEEEEEEEEEECS
T ss_pred             -cEEEEEEeecCCCCcccceeEEEEEEEEEEcCC
Confidence             999999999996   589999999999998774
>3ipv_A Lectin alpha chain; galactose binding, SEED lectin, hemagglutinin, legume lectin fungal, sugar binding protein; 2.04A {Spatholobus parviflorus} PDB: 3ipv_B 3usu_B* 3usu_A* Back     alignment and structure
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL; 1.65A {Platypodium elegans} SCOP: b.29.1.1 PDB: 3zvx_A* 1ukg_A* 1q8o_A* 1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A* 2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A 2phf_A* 2phr_A* 2pht_A* ... Back     alignment and structure
>1v6i_A Agglutinin, PNA, galactose-binding lectin; open quaternary association, orthorhombic, carbohydrate specificity, protein crystallography; HET: GAL GLC; 2.15A {Arachis hypogaea} SCOP: b.29.1.1 PDB: 1bzw_A* 1v6j_A* 1v6k_A* 1v6l_A* 1v6m_A 1v6n_A 1v6o_A 2dva_A* 1cq9_A 1ciw_A* 1qf3_A* 1rir_A* 1rit_A* 2dh1_A 1cr7_A* 2dv9_A* 2dvb_A* 2dvd_A* 2dvf_A 2dvg_A* ... Back     alignment and structure
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1 Back     alignment and structure
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly roll, sugar binding protein; 1.81A {Robinia pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A* Back     alignment and structure
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A* Back     alignment and structure
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein, saccharide, protein-carbohydrate interactions, lactose, glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli} SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A* 1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A 1uzy_A* 3n35_A* 3n36_A* 3n3h_A* Back     alignment and structure
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A* Back     alignment and structure
>2eig_A Lectin; L-fucosyl, N-acetyl-D-glucosamine, SUG binding protein; HET: NAG; 2.00A {Lotus tetragonolobus} Back     alignment and structure
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1 Back     alignment and structure
>1hql_A Lectin; xenograft antigen, sugar BI protein; HET: GLA MBG NAG; 2.20A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1gnz_A* Back     alignment and structure
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A* Back     alignment and structure
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich, protein-carbohydrate complex, sugar binding protein; HET: MAN; 1.90A {Bowringia mildbraedii} Back     alignment and structure
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A* Back     alignment and structure
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET: NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP: b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A* Back     alignment and structure
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A* Back     alignment and structure
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A* Back     alignment and structure
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A* Back     alignment and structure
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1 Back     alignment and structure
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1 Back     alignment and structure
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B* Back     alignment and structure
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A* Back     alignment and structure
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich, carbohydrate binding protein, cargo receptor, transport; HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A 2duq_A* 2duo_A* 2e6v_A* Back     alignment and structure
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.42A {Saccharomyces cerevisiae} SCOP: b.29.1.13 Back     alignment and structure
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1 Back     alignment and structure
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A Back     alignment and structure
>1nls_A Concanavalin A; lectin, agglutinin; 0.94A {Canavalia ensiformis} SCOP: b.29.1.1 PDB: 1bxh_A* 1apn_A 1ces_A 1cjp_A* 1c57_A 1cvn_A* 1con_A 1dq1_A 1dq2_A 1dq4_A 1dq5_A 1dq6_A 1enq_A 1enr_A 1ens_A 1gic_A* 1dq0_A 1hqw_A 1gkb_A* 1i3h_A ... Back     alignment and structure
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A Back     alignment and structure
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 360
d1hqla_236 b.29.1.1 (A:) Legume lectin {Griffonia simplicifol 2e-51
d1g9fa_251 b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) 2e-49
d1g7ya_253 b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos 8e-49
d1v6ia_232 b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypog 2e-47
d1gzca_239 b.29.1.1 (A:) Legume lectin {Cockspur coral tree ( 8e-47
d1leda_243 b.29.1.1 (A:) Legume lectin {West-central african 1e-46
d1f9ka_234 b.29.1.1 (A:) Legume lectin {Winged bean (Psophoca 1e-46
d1qnwa_237 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 6e-46
d1fx5a_240 b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus 2e-44
d2d3sa1237 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Pso 4e-44
d1g8wa_233 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-43
d1avba_226 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-42
d1ukga_241 b.29.1.1 (A:) Legume lectin {Bloodwood tree (Ptero 2e-42
g1qmo.1230 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolich 1e-41
g2ltn.1229 b.29.1.1 (A:,B:) Legume lectin {Garden pea (Pisum 4e-41
d1fnya_237 b.29.1.1 (A:) Legume lectin {Black locust (Robinia 1e-40
d1n47a_233 b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia vi 3e-40
d1dbna_239 b.29.1.1 (A:) Legume lectin {Maackia amurensis, le 2e-39
d1ioaa_228 b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also ar 1e-35
d1dhkb_204 b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also ar 5e-33
d1nlsa_237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 9e-30
d1nlsa_237 b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia 3e-14
d1gv9a_228 b.29.1.13 (A:) Carbohydrate-recognition domain of 7e-21
d2a6za1221 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Bake 7e-06
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Length = 236 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]

 Score =  169 bits (428), Expect = 2e-51
 Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 22/243 (9%)

Query: 28  SSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLT------DSVSSSAGRVMYKKPIK 81
           S SF+F +F   S +E SI   GDA    G   +QL         +  SAGR +Y  P++
Sbjct: 1   SVSFTFPNFW--SDVEDSIIFQGDANTTAG--TLQLCKTNQYGTPLQWSAGRALYSDPVQ 56

Query: 82  LVEGNTGNLASFSTNFSFSMSKEN---GDGLAFIMVPSGFNLSVSANT--SFGLSPEMDK 136
           L +  T ++ASF T F+F +        DGLAF + P   ++  +      F  S     
Sbjct: 57  LWDNKTESVASFYTEFTFFLKITGNGPADGLAFFLAPPDSDVKDAGEYLGLFNKSTATQP 116

Query: 137 SKFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVSVKVSNVSSHNIVLNSDKKLNSWIDY 196
           SK +VVAVEFDT  +  + + +  H+GI+V S+VSV        +  + S K   + I Y
Sbjct: 117 SKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVSVATKRWEDSD--IFSGKIATARISY 174

Query: 197 EASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSN-RNSSQICNLYSW 255
           + S++ L V LSY       D +LS+ +D+ +    E V VG+S+S   N      + SW
Sbjct: 175 DGSAEILTVVLSY---PDGSDYILSHSVDMRQNLP-ESVRVGISASTGNNQFLTVYILSW 230

Query: 256 SFK 258
            F 
Sbjct: 231 RFS 233
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Length = 251 Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Length = 253 Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 232 Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Length = 239 Back     information, alignment and structure
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Length = 243 Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Length = 234 Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Length = 237 Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Length = 240 Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Length = 237 Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 233 Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 226 Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Length = 241 Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Length = 237 Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Length = 239 Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Length = 228 Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 204 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 237 Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 228 Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1hqla_236 Legume lectin {Griffonia simplicifolia, lectin I-b 100.0
d1leda_243 Legume lectin {West-central african legume (Griffo 100.0
d1g9fa_251 Legume lectin {Soybean (Glycine max) [TaxId: 3847] 100.0
d1gzca_239 Legume lectin {Cockspur coral tree (Erythrina cris 100.0
d1fx5a_240 Legume lectin {Furze (Ulex europaeus), UEA-I [TaxI 100.0
d1qnwa_237 Legume lectin {Furze (Ulex europaeus), UEA-II [Tax 100.0
d2d3sa1237 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1g7ya_253 Legume lectin {Horse gram (Dolichos biflorus), dif 100.0
d1f9ka_234 Legume lectin {Winged bean (Psophocarpus tetragono 100.0
d1g8wa_233 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1v6ia_232 Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3 100.0
d1dbna_239 Legume lectin {Maackia amurensis, leukoagglutinin 100.0
g1qmo.1230 Legume lectin {Field bean (Dolichos lablab), Fril 100.0
d1fnya_237 Legume lectin {Black locust (Robinia pseudoacacia) 100.0
d1n47a_233 Legume lectin {Hairy vetch (Vicia villosa), isolec 100.0
d1ukga_241 Legume lectin {Bloodwood tree (Pterocarpus angolen 100.0
g2ltn.1229 Legume lectin {Garden pea (Pisum sativum) [TaxId: 100.0
d1avba_226 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1ioaa_228 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1dhkb_204 Phytohemagglutinin-L, PHA-L, also arcelin {Kidney 100.0
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.98
d1gv9a_228 Carbohydrate-recognition domain of P58/ERGIC-53 {R 99.97
d2a6za1221 Emp47p N-terminal domain {Baker's yeast (Saccharom 99.91
d2a6va1218 Emp46p N-terminal domain {Baker's yeast (Saccharom 99.89
d1nlsa_237 Concanavalin A {Jack bean (Canavalia ensiformis) [ 99.87
>d1hqla_ b.29.1.1 (A:) Legume lectin {Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Legume lectins
domain: Legume lectin
species: Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]

Probab=100.00  E-value=3.7e-56  Score=412.54  Aligned_cols=219  Identities=34%  Similarity=0.491  Sum_probs=191.1

Q ss_pred             ceeeEeCCCCCCCCCccCeEEecceEEecCCcEEEeCCCC------CCceEEEEecCCeeeecCCCCCceeeEEEEEEEE
Q 018168           28 SSSFSFKSFGKGSHLESSIALYGDAKVVNGGSVVQLTDSV------SSSAGRVMYKKPIKLVEGNTGNLASFSTNFSFSM  101 (360)
Q Consensus        28 ~~sF~f~~F~~~~~~~~~l~l~GdA~v~~~g~~l~LT~~~------~~~~G~v~y~~Pi~l~~~~~~~~aSFsT~F~F~I  101 (360)
                      .++|+|++|..+.  .++|+|+|||.+.++  .|+||+..      ..++|||+|++||+||++.+++++||+|+|+|.|
T Consensus         1 ~~sF~f~~F~~~~--~~~l~l~G~A~~~~~--~l~LT~~~~~~~~~~~s~Gra~y~~Pv~l~~~~t~~~asFsT~F~F~i   76 (236)
T d1hqla_           1 SVSFTFPNFWSDV--EDSIIFQGDANTTAG--TLQLCKTNQYGTPLQWSAGRALYSDPVQLWDNKTESVASFYTEFTFFL   76 (236)
T ss_dssp             CCEEEESCSCSCG--GGTEEEEETCEEETT--EEECSCBCTTSCBCSSCEEEEEESSCEECCCSTTCCCCEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCC--cCCEEEeccEEecCC--EEEEecCCCCCcccccceEEEEECCCEEeecCCCCceeEEEEEEEEEE
Confidence            3689999997542  368999999999765  69999853      4689999999999999999999999999999999


Q ss_pred             ec---cCCCceEEEEecCCCCcCCCCCCCCCCCCCCCCC-------CccEEEEEEeeccccccCCCCCCeeEEecCCccc
Q 018168          102 SK---ENGDGLAFIMVPSGFNLSVSANTSFGLSPEMDKS-------KFRVVAVEFDTLRDVKYGDVNGNHVGIDVGSLVS  171 (360)
Q Consensus       102 ~~---~~gdGlAFvl~p~~~~~~~~~~~~~G~~lGl~n~-------~~~~vAVEFDT~~n~~~~Dp~~nHVgIdins~~S  171 (360)
                      ..   .+||||||+|+|.+..     .+..|++||+.+.       .++.+||||||++|.+++||++||||||+|++.|
T Consensus        77 ~~~~~~~gDGlAFvl~p~~~~-----~~~~G~~lGl~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHIgIdvns~~s  151 (236)
T d1hqla_          77 KITGNGPADGLAFFLAPPDSD-----VKDAGEYLGLFNKSTATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVS  151 (236)
T ss_dssp             EECSSCCCCEEEEEEECTTCC-----CCCCGGGTTTSCTTTTTCGGGCCCEEEEEECSCCSSSCCCSSCEEEEEESSSSC
T ss_pred             eCCCCCCCceEEEEEeCCCCC-----CCCCccccccccccccCCcccCceEEEEeeCccCCCCCCCCCCEEEEEcCCccc
Confidence            75   3799999999997643     3456889998652       4688999999999999999999999999999998


Q ss_pred             ceeccccccceeecCCCeEEEEEEEeCCCcEEEEEEEeCCCCCCCCceeeEEecCCCcCCCCceEEEEEeecCCc-ccee
Q 018168          172 VKVSNVSSHNIVLNSDKKLNSWIDYEASSKRLEVRLSYLDSAKPVDPLLSYPIDLSKLWNDEEVFVGLSSSNRNS-SQIC  250 (360)
Q Consensus       172 ~~~~~~~~~~~~l~~G~~~~vwI~Yd~~~~~L~V~l~~~~~~kp~~p~ls~~vdLs~~l~~~~~yvGFSAsTG~~-~~~h  250 (360)
                      .++.++.  ..+|.+|+.++|||+||+.+++|+|+|++.   +|.+|+|++.+||+++|++ +||||||||||+. .+.|
T Consensus       152 ~~~~~~~--~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~---~~~~~~ls~~vdL~~~l~~-~v~vGFSasTG~~~~~~h  225 (236)
T d1hqla_         152 VATKRWE--DSDIFSGKIATARISYDGSAEILTVVLSYP---DGSDYILSHSVDMRQNLPE-SVRVGISASTGNNQFLTV  225 (236)
T ss_dssp             SEEEECC--HHHHTSCSCEEEEEEEETTTTEEEEEEEET---TTEEEEEEEECCGGGTSCS-EEEEEEEEECCSCCCEEE
T ss_pred             ccccccc--cccccCCCEEEEEEEEeCCCcEEEEEEecC---CCCCeeEEEEeCHHHhCCC-cEEEEEEeECCCCCceEE
Confidence            8876653  456889999999999999999999999875   4678999999999999998 9999999999975 5789


Q ss_pred             EEEEEEEEecC
Q 018168          251 NLYSWSFKLRH  261 (360)
Q Consensus       251 ~I~sWsF~~~~  261 (360)
                      +|++|+|++++
T Consensus       226 ~I~sWsF~s~l  236 (236)
T d1hqla_         226 YILSWRFSSNL  236 (236)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEeEeEecC
Confidence            99999999863
>d1leda_ b.29.1.1 (A:) Legume lectin {West-central african legume (Griffonia simplicifolia) [TaxId: 3850]} Back     information, alignment and structure
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1gzca_ b.29.1.1 (A:) Legume lectin {Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]} Back     information, alignment and structure
>d1fx5a_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-I [TaxId: 3902]} Back     information, alignment and structure
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II [TaxId: 3902]} Back     information, alignment and structure
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]} Back     information, alignment and structure
>d1g7ya_ b.29.1.1 (A:) Legume lectin {Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]} Back     information, alignment and structure
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus tetragonolobus), acidic lectin [TaxId: 3891]} Back     information, alignment and structure
>d1g8wa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1v6ia_ b.29.1.1 (A:) Legume lectin {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1dbna_ b.29.1.1 (A:) Legume lectin {Maackia amurensis, leukoagglutinin [TaxId: 37501]} Back     information, alignment and structure
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia pseudoacacia) [TaxId: 35938]} Back     information, alignment and structure
>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Back     information, alignment and structure
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]} Back     information, alignment and structure
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a [TaxId: 3885]} Back     information, alignment and structure
>d1dhkb_ b.29.1.1 (B:) Phytohemagglutinin-L, PHA-L, also arcelin {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a6va1 b.29.1.13 (A:9-226) Emp46p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlsa_ b.29.1.1 (A:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure