Citrus Sinensis ID: 018173

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIFH

cccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHcccccccEEEEEEEccccEEEEEEccccccEEEEEccccccEEEccccccccccccccEEEEEEEEc

ccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEEccc

MTRIKEFFTKLSesstnqnisnipKKKKKLFLALFATLLVVAAVIGIVAGvnsrknsgdngnephHAILksscsstrypdlcFSAIAAvpeaskkvtsqkDVIEMSLNITTTAVEHNYFGIQKLLkrtnltkreKVALHDCLETIDETLDELHKAVEDleeypnkkslsqHADDLKTLMSAAmtnqgtcldgfshddanKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNnrklieetstvdgwpawlstgdrrllqsssvtpnvvvaadgsgnFKTVAAAVAaapqggtkrYIIRIKAGvyrenvevtkkhknimfigdgrtrtiitgsrnvvdgsttfksatvgkfifh

MTRIKEFFtklsesstnqnisnipKKKKKLFLALFATLLVVAAVIGIVAGVNSrknsgdngnEPHHAILKSSCSSTRYPDLCFSAIAAVpeaskkvtsqkdVIEMSLNItttavehnyFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLeeypnkkslSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAvaaapqggtkryiIRIKAGvyrenvevtkkhknimfigdgrtrtiitgsrnvvdgsttfksatvgkfifh

MTRIKEFFTKLSESSTNQNISNIPkkkkklflalfatllvvaavigivagvNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTvaaavaaaPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIFH

*****************************LFLALFATLLVVAAVIGIVAGV***********************STRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHK**********************************CLDG****************GQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFI**

******************************FLALFATLLVVAAVIGIVA********************KSSCSSTRYPDLCFSA****************VIEMSLNITTTAVEHNY*******************LHDCLETIDETLDELHKAVEDL**********QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMI***************VDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIFH

MTRIKEFFT***********SNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIFH

************************KKKKKLFLALFATLLVVAAVIGIVAGVNS*********EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDT*********************GWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIF*

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCxxxxxxxxxxxxxxxxxxxxxPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFIFH

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		360	2.2.26 [Sep-21-2011]
P83948		584	Pectinesterase 3 OS=Citru	no	no	0.983	0.606	0.997	0.0
O04886		584	Pectinesterase 1 OS=Citru	no	no	0.980	0.604	0.985	0.0
Q43143		583	Pectinesterase/pectineste	N/A	no	0.95	0.586	0.635	1e-126
O49006		592	Pectinesterase/pectineste	yes	no	0.938	0.570	0.636	1e-114
Q42534		587	Pectinesterase 2 OS=Arabi	no	no	0.952	0.584	0.614	1e-110
Q9FK05		587	Probable pectinesterase/p	no	no	0.880	0.540	0.343	7e-43
Q9M3B0		598	Probable pectinesterase/p	no	no	0.911	0.548	0.315	6e-41
Q9LUL8		968	Putative pectinesterase/p	no	no	0.788	0.293	0.351	7e-40
Q8GX86		669	Probable pectinesterase/p	no	no	0.877	0.472	0.304	3e-38
Q9LXK7		527	Probable pectinesterase/p	no	no	0.588	0.402	0.404	2e-37

>sp\|P83948\|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1	Back alignment and function desciption

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/354 (99%), Positives = 354/354 (100%)

Query: 1   MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN 60
           MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN
Sbjct: 1   MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN 60

Query: 61  GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG 120
           GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG
Sbjct: 61  GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG 120

Query: 121 IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS 180
           IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS
Sbjct: 121 IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS 180

Query: 181 AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN 240
           AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN
Sbjct: 181 AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN 240

Query: 241 RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTK 300
           RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAA+VAAAPQGGTK
Sbjct: 241 RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAASVAAAPQGGTK 300

Query: 301 RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV 354
           RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV
Sbjct: 301 RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV 354

Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1

>sp\|O04886\|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1	Back alignment and function description

>sp\|Q43143\|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1	Back alignment and function description

>sp\|O49006\|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2	Back alignment and function description

>sp\|Q42534\|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2	Back alignment and function description

>sp\|Q9FK05\|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1	Back alignment and function description

>sp\|Q9M3B0\|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1	Back alignment and function description

>sp\|Q9LUL8\|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1	Back alignment and function description

>sp\|Q8GX86\|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LXK7\|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		360
57014097		584	RecName: Full=Pectinesterase 3; Short=PE	0.983	0.606	0.997	0.0
2098711		584	pectinesterase [Citrus sinensis]	0.983	0.606	0.985	0.0
6174912		584	RecName: Full=Pectinesterase 1; Short=PE	0.980	0.604	0.985	0.0
225441977		611	PREDICTED: pectinesterase 3-like [Vitis	0.983	0.579	0.724	1e-145
377824753		582	pectin methylesterase [Gossypium hirsutu	0.972	0.601	0.734	1e-145
401834530		582	pectin methylesterase [Theobroma cacao]	0.969	0.599	0.714	1e-140
255584426		577	Pectinesterase-3 precursor, putative [Ri	0.969	0.604	0.708	1e-135
224074109		579	predicted protein [Populus trichocarpa]	0.969	0.602	0.668	1e-130
384597509		587	pectin methylesterase [Coffea arabica]	0.972	0.596	0.684	1e-128
350538995		583	pectinesterase/pectinesterase inhibitor	0.95	0.586	0.635	1e-124

>gi\|57014097\|sp\|P83948.1\|PME3_CITSI RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor	Back alignment and taxonomy information

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/354 (99%), Positives = 354/354 (100%)

Query: 1   MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN 60
           MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN
Sbjct: 1   MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN 60

Query: 61  GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG 120
           GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG
Sbjct: 61  GNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFG 120

Query: 121 IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS 180
           IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS
Sbjct: 121 IQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMS 180

Query: 181 AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN 240
           AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN
Sbjct: 181 AAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNN 240

Query: 241 RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTK 300
           RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAA+VAAAPQGGTK
Sbjct: 241 RKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAASVAAAPQGGTK 300

Query: 301 RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV 354
           RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV
Sbjct: 301 RYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATV 354

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|2098711\|gb\|AAB57670.1\| pectinesterase [Citrus sinensis]	Back alignment and taxonomy information

>gi\|6174912\|sp\|O04886.1\|PME1_CITSI RecName: Full=Pectinesterase 1; Short=PE 1; AltName: Full=Pectin methylesterase; Flags: Precursor gi\|2098705\|gb\|AAB57667.1\| pectinesterase [Citrus sinensis]	Back alignment and taxonomy information

>gi\|225441977\|ref\|XP_002265171.1\| PREDICTED: pectinesterase 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|377824753\|gb\|AFB77929.1\| pectin methylesterase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|401834530\|gb\|AFQ23194.1\| pectin methylesterase [Theobroma cacao]	Back alignment and taxonomy information

>gi\|255584426\|ref\|XP_002532944.1\| Pectinesterase-3 precursor, putative [Ricinus communis] gi\|223527273\|gb\|EEF29428.1\| Pectinesterase-3 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224074109\|ref\|XP_002304257.1\| predicted protein [Populus trichocarpa] gi\|222841689\|gb\|EEE79236.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|384597509\|gb\|AFI23411.1\| pectin methylesterase [Coffea arabica]	Back alignment and taxonomy information

>gi|350538995|ref|NP_001233857.1| pectinesterase/pectinesterase inhibitor U1 precursor [Solanum lycopersicum] gi|6093740|sp|Q43143.1|PMEU1_SOLLC RecName: Full=Pectinesterase/pectinesterase inhibitor U1; Includes: RecName: Full=Pectinesterase inhibitor U1; AltName: Full=Pectin methylesterase inhibitor U1; Includes: RecName: Full=Pectinesterase U1; Short=PE U1; AltName: Full=Pectin methylesterase U1; Flags: Precursor gi|1222552|gb|AAD09283.1| pectin methylesterase [Solanum lycopersicum] gi|15667247|gb|AAL02367.1| pectin methylesterase [Solanum lycopersicum]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		360
TAIR\|locus:2197056		587	PME2 "pectin methylesterase 2"	0.955	0.586	0.572	5.6e-100
TAIR\|locus:2091000		592	PME3 "pectin methylesterase 3"	0.533	0.324	0.655	5.4e-65
TAIR\|locus:2091070		968	ATPMEPCRC [Arabidopsis thalian	0.786	0.292	0.346	3.5e-38
TAIR\|locus:2154277		587	PMEPCRF "pectin methylesterase	0.780	0.478	0.325	1.7e-37
TAIR\|locus:2082951		598	AT3G49220 [Arabidopsis thalian	0.777	0.468	0.315	5e-37
TAIR\|locus:2084751		527	AT3G43270 [Arabidopsis thalian	0.630	0.430	0.372	3.1e-35
TAIR\|locus:2197061		586	PME1 "pectin methylesterase 1"	0.769	0.472	0.327	1.1e-34
TAIR\|locus:2143340		732	AT5G27870 [Arabidopsis thalian	0.802	0.394	0.292	1.7e-34
TAIR\|locus:2133219		518	AT4G02320 [Arabidopsis thalian	0.738	0.513	0.339	5.8e-34
TAIR\|locus:2137839		532	AT4G02300 [Arabidopsis thalian	0.697	0.471	0.352	9.7e-34

TAIR\|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 210/367 (57%), Positives = 247/367 (67%)

Query:     1 MTRIKEFFTKLSESSTNQNISNIPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDN 60
             M  IKEF +K S+   N+ +                               N  KN    
Sbjct:     1 MAPIKEFISKFSDFKNNKKL--------ILSSAAIALLLLASIVGIAATTTNQNKNQKIT 52

Query:    61 G-NEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYF 119
               +   HAILKS CSST YP+LCFSA+AA     K++TSQK+VIE SLN+TT AV+HNYF
Sbjct:    53 TLSSTSHAILKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKAVKHNYF 110

Query:   120 GIQKLL-KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTL 178
              ++KL+ KR  LT RE  ALHDCLETIDETLDELH AVEDL +YP +KSL +HADDLKTL
Sbjct:   111 AVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTL 170

Query:   179 MSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMM----- 233
             +S+A+TNQGTCLDGFS+DDA++ VR AL  GQVHVE MCSNALAMIKNMT+TD+      
Sbjct:   171 ISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELR 230

Query:   234 ----IMRTSNNRKLIEETSTVD--GWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTX 287
                     +NNRKL E T  +D  GWP WLS GDRRLLQ S++  +  VA DGSG+F T 
Sbjct:   231 DKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKADATVADDGSGDFTTV 290

Query:   288 XXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST 347
                    P+   KR++I IKAGVYRENVEVTKK  NIMF+GDGR +TIITGSRNVVDGST
Sbjct:   291 AAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNVVDGST 350

Query:   348 TFKSATV 354
             TF SATV
Sbjct:   351 TFHSATV 357

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005618 "cell wall" evidence=IEA

GO:0030599 "pectinesterase activity" evidence=IEA;ISS

GO:0042545 "cell wall modification" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005576 "extracellular region" evidence=ISS

TAIR\|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091070 ATPMEPCRC [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2197061 PME1 "pectin methylesterase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137839 AT4G02300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04886	PME1_CITSI	3, ., 1, ., 1, ., 1, 1	0.9858	0.9805	0.6044	no	no
P83948	PME3_CITSI	3, ., 1, ., 1, ., 1, 1	0.9971	0.9833	0.6061	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.11	0.991
3rd Layer	3.1.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033995001	RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023108001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (329 aa)	•	•	•	0.921
	GSVIVG00029520001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (331 aa)	•	•	•	0.920
	GSVIVG00033372001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (332 aa)		•	•	0.919
	GSVIVG00018131001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (349 aa)		•	•	0.918
	Pel	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (403 aa)		•	•	0.917
	GSVIVG00006874001	SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_179, whole genome sho [...] (397 aa)		•	•	0.916
	GSVIVG00038116001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (543 aa)			•	0.899
	GSVIVG00036268001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (618 aa)			•	0.899
	26N20_150	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (452 aa)			•	0.899
	GSVIVG00030705001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (444 aa)			•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		360
PLN02313		587	PLN02313, PLN02313, Pectinesterase/pectinesterase	1e-153
PLN02314		586	PLN02314, PLN02314, pectinesterase	1e-65
PLN02484		587	PLN02484, PLN02484, probable pectinesterase/pectin	5e-59
PLN02745		596	PLN02745, PLN02745, Putative pectinesterase/pectin	6e-59
PLN02301		548	PLN02301, PLN02301, pectinesterase/pectinesterase	3e-55
PLN02468		565	PLN02468, PLN02468, putative pectinesterase/pectin	4e-54
PLN02933		530	PLN02933, PLN02933, Probable pectinesterase/pectin	6e-52
PLN02201		520	PLN02201, PLN02201, probable pectinesterase/pectin	8e-50
PLN02506		537	PLN02506, PLN02506, putative pectinesterase/pectin	2e-48
PLN02416		541	PLN02416, PLN02416, probable pectinesterase/pectin	3e-47
pfam01095		298	pfam01095, Pectinesterase, Pectinesterase	1e-45
PLN02217		670	PLN02217, PLN02217, probable pectinesterase/pectin	8e-43
PLN02990		572	PLN02990, PLN02990, Probable pectinesterase/pectin	1e-39
PLN02170		529	PLN02170, PLN02170, probable pectinesterase/pectin	3e-38
PLN02713		566	PLN02713, PLN02713, Probable pectinesterase/pectin	9e-37
pfam04043		145	pfam04043, PMEI, Plant invertase/pectin methyleste	3e-32
smart00856		148	smart00856, PMEI, Plant invertase/pectin methylest	3e-32
PLN02916		502	PLN02916, PLN02916, pectinesterase family protein	1e-30
PLN02995		539	PLN02995, PLN02995, Probable pectinesterase/pectin	9e-30
PLN02197		588	PLN02197, PLN02197, pectinesterase	7e-29
PLN02708		553	PLN02708, PLN02708, Probable pectinesterase/pectin	1e-28
PLN03043		538	PLN03043, PLN03043, Probable pectinesterase/pectin	1e-27
PLN02488		509	PLN02488, PLN02488, probable pectinesterase/pectin	2e-26
PLN02698		497	PLN02698, PLN02698, Probable pectinesterase/pectin	9e-23
TIGR01614		178	TIGR01614, PME_inhib, pectinesterase inhibitor dom	1e-20
PLN02773		317	PLN02773, PLN02773, pectinesterase	4e-11
PLN02480		343	PLN02480, PLN02480, Probable pectinesterase	1e-10
PLN02634		359	PLN02634, PLN02634, probable pectinesterase	2e-10
PLN02665		366	PLN02665, PLN02665, pectinesterase family protein	6e-09
PLN02432		293	PLN02432, PLN02432, putative pectinesterase	6e-09
PLN02304		379	PLN02304, PLN02304, probable pectinesterase	9e-09
PLN02497		331	PLN02497, PLN02497, probable pectinesterase	3e-08
COG4677		405	COG4677, PemB, Pectin methylesterase [Carbohydrate	1e-06
PLN02682		369	PLN02682, PLN02682, pectinesterase family protein	3e-06
PLN02671		359	PLN02671, PLN02671, pectinesterase	4e-06
PLN02176		340	PLN02176, PLN02176, putative pectinesterase	6e-06
PRK10531		422	PRK10531, PRK10531, acyl-CoA thioesterase; Provisi	5e-05

>gnl\|CDD\|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor	Back alignment and domain information

 Score =  442 bits (1137), Expect = e-153
 Identities = 229/369 (62%), Positives = 269/369 (72%), Gaps = 25/369 (6%)

Query: 1   MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGV-NSRKNSGD 59
           M  IK+F +K S         +    KK +  +    LL+VAAV+GI AG  N  KN   
Sbjct: 1   MAPIKKFISKFS---------DFKNNKKLILSSAAIALLLVAAVVGIAAGTTNQNKNRKI 51

Query: 60  NGNEP-HHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNY 118
                  HA+LKS CSST YP+LCFSA+AA     K++TSQK+VIE SLN+TT AV+HNY
Sbjct: 52  TTLSSTSHAVLKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKAVKHNY 109

Query: 119 FGIQKLL-KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKT 177
           F ++KL+ KR  LT RE  ALHDCLETIDETLDELH AVEDL +YP +KSL +HADDLKT
Sbjct: 110 FAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKT 169

Query: 178 LMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMM---- 233
           L+S+A+TNQGTCLDGFS+DDA++ VR AL  GQVHVE MCSNALAMIKNMT+TD+     
Sbjct: 170 LISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFEL 229

Query: 234 -----IMRTSNNRKLIEETSTVD--GWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKT 286
                    +NNRKL E T  +D  GWP WLS GDRRLLQ S++  +  VAADGSG+F T
Sbjct: 230 RDKSSSFTNNNNRKLKEVTGDLDSEGWPTWLSVGDRRLLQGSTIKADATVAADGSGDFTT 289

Query: 287 VAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGS 346
           VAAAVAAAP+   KR++I IKAGVYRENVEVTKK KNIMF+GDGR +TIITGSRNVVDGS
Sbjct: 290 VAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGS 349

Query: 347 TTFKSATVG 355
           TTF SATV 
Sbjct: 350 TTFHSATVA 358

Length = 587

>gnl\|CDD\|215179 PLN02314, PLN02314, pectinesterase	Back alignment and domain information

>gnl\|CDD\|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|216297 pfam01095, Pectinesterase, Pectinesterase	Back alignment and domain information

>gnl\|CDD\|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178504 PLN02916, PLN02916, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|177848 PLN02197, PLN02197, pectinesterase	Back alignment and domain information

>gnl\|CDD\|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional	Back alignment and domain information

>gnl\|CDD\|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain	Back alignment and domain information

>gnl\|CDD\|178372 PLN02773, PLN02773, pectinesterase	Back alignment and domain information

>gnl\|CDD\|178098 PLN02480, PLN02480, Probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|215340 PLN02634, PLN02634, probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|215357 PLN02665, PLN02665, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178051 PLN02432, PLN02432, putative pectinesterase	Back alignment and domain information

>gnl\|CDD\|215173 PLN02304, PLN02304, probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|178113 PLN02497, PLN02497, probable pectinesterase	Back alignment and domain information

>gnl\|CDD\|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215367 PLN02682, PLN02682, pectinesterase family protein	Back alignment and domain information

>gnl\|CDD\|178276 PLN02671, PLN02671, pectinesterase	Back alignment and domain information

>gnl\|CDD\|215117 PLN02176, PLN02176, putative pectinesterase	Back alignment and domain information

>gnl\|CDD\|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		360
PLN02314		586	pectinesterase	100.0
PLN02468		565	putative pectinesterase/pectinesterase inhibitor	100.0
PLN02484		587	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02313		587	Pectinesterase/pectinesterase inhibitor	100.0
PLN02217		670	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02990		572	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02197		588	pectinesterase	100.0
PLN02745		596	Putative pectinesterase/pectinesterase inhibitor	100.0
PLN02506		537	putative pectinesterase/pectinesterase inhibitor	100.0
PLN02301		548	pectinesterase/pectinesterase inhibitor	100.0
PLN02713		566	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02416		541	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02708		553	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02995		539	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN03043		538	Probable pectinesterase/pectinesterase inhibitor;	100.0
PLN02933		530	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02488		509	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02201		520	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02170		529	probable pectinesterase/pectinesterase inhibitor	100.0
PLN02698		497	Probable pectinesterase/pectinesterase inhibitor	100.0
PLN02916		502	pectinesterase family protein	100.0
smart00856		148	PMEI Plant invertase/pectin methylesterase inhibit	99.96
TIGR01614		178	PME_inhib pectinesterase inhibitor domain. This mo	99.96
PF04043		152	PMEI: Plant invertase/pectin methylesterase inhibi	99.94
PLN02671		359	pectinesterase	99.94
PLN02682		369	pectinesterase family protein	99.92
PLN02304		379	probable pectinesterase	99.91
PLN02665		366	pectinesterase family protein	99.9
PLN02634		359	probable pectinesterase	99.89
PLN02497		331	probable pectinesterase	99.89
PLN02773		317	pectinesterase	99.89
PF01095		298	Pectinesterase: Pectinesterase; InterPro: IPR00007	99.88
PLN02176		340	putative pectinesterase	99.88
PLN02432		293	putative pectinesterase	99.87
PRK10531		422	acyl-CoA thioesterase; Provisional	99.86
PLN02480		343	Probable pectinesterase	99.84
COG4677		405	PemB Pectin methylesterase [Carbohydrate transport	99.42
TIGR03805		314	beta_helix_1 parallel beta-helix repeat-containing	97.71
PF07602		246	DUF1565: Protein of unknown function (DUF1565); In	97.25
PF12708		225	Pectate_lyase_3: Pectate lyase superfamily protein	94.2
PF14592		425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	93.8
TIGR03808		455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	85.75

>PLN02314 pectinesterase	Back alignment and domain information

Probab=100.00  E-value=8.7e-77  Score=610.76  Aligned_cols=350  Identities=33%  Similarity=0.536  Sum_probs=295.0

Q ss_pred             Ccccc--ccccccccccccCCCCCCCCccceehhHHHHHHHHHHHHHhheeeccccCCCCCC--CCC---chhHHHHhcc
Q 018173            1 MTRIK--EFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDN--GNE---PHHAILKSSC   73 (360)
Q Consensus         1 m~~~~--~~~~k~~~~~~~~~~~~~~~~~k~~~i~~~s~illv~~vi~~~~~v~~~~~~~~~--~~~---~~~~~v~~~C   73 (360)
                      |++++  ++|++|.+..++..   +++++||++|+++|++|||+++|+++++|..|++++++  .+.   .....|+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~~vi~~v~~~~~~~~~~~~~~~~~~~~~~~~~Iks~C   77 (586)
T PLN02314          1 MDSINSFKGYGKVDEAEEQAF---RRKTRKRLIIIVVSVVVLVAIIIGAVVGTVVHKRKNESNPSPPPELTPATSLKAVC   77 (586)
T ss_pred             CcchhhhcccCCccchhhhhh---hhcccceehHHHHHHHHHHHHHHhheeEEeccccCCCCCCCCccccCHHHHHHHhc
Confidence            45543  46999876533322   23447899999999999999999999887766443322  111   2556999999


Q ss_pred             CCCCChhchHHHhhcCCCcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 018173           74 SSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELH  153 (360)
Q Consensus        74 ~~T~yp~~C~ssLs~~~~s~~~~~dp~~l~~~al~~a~~~~~~a~~~~~~l~~~~~~~~~~k~AL~dC~el~~~Ald~L~  153 (360)
                      +.|+||++|+++|++.|.+  ...+|++|++++++++++++.++...++++.. ...+++++.||+||+|+|++|+|+|+
T Consensus        78 ~~T~YP~lC~sSLs~~p~s--~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~-~~~~~~~k~AL~DC~EllddAid~L~  154 (586)
T PLN02314         78 SVTRYPESCISSISSLPTS--NTTDPETLFKLSLKVAIDELSKLSDLPQKLIN-ETNDERLKSALRVCETLFDDAIDRLN  154 (586)
T ss_pred             cCCCChHHHHHHHhcccCc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876  57799999999999999999999999998875 35789999999999999999999999


Q ss_pred             HHHHHHhcCCCcc-ccccchhHHHHHHHHHHhhhhhhhhhcCCCCC----CcccccccchhhHHHHHHHHhHHHHHhhcc
Q 018173          154 KAVEDLEEYPNKK-SLSQHADDLKTLMSAAMTNQGTCLDGFSHDDA----NKHVRDALSDGQVHVEKMCSNALAMIKNMT  228 (360)
Q Consensus       154 ~s~~~l~~~~~~~-~~~~~~~Dl~twLSAAlT~q~TC~DgF~~~~~----~~~~~~~l~~~~~~~~~L~SNaLAiv~~l~  228 (360)
                      +++++|...+... .....++|++||||||||||+||+|||++...    ++.+++.|...+.++.+|+||+|||++++.
T Consensus       155 ~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNaLAIi~~l~  234 (586)
T PLN02314        155 DSISSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSLAIVSKIL  234 (586)
T ss_pred             HHHHHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999997543100 02457899999999999999999999986421    346788888889999999999999999987


Q ss_pred             chhhhhhhc-cCCccccccc-ccCCCCCCCcccccccccccCCCCCeEEEccCCCCCcccHHHHHHhcCCCCCceEEEEE
Q 018173          229 DTDMMIMRT-SNNRKLIEET-STVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRI  306 (360)
Q Consensus       229 ~~~~~~~~~-~~~r~l~~~~-~~~~~~P~W~~~~drrll~~~~~~~~~~V~~dg~g~f~ti~~Ai~~~p~~~~~~~~I~i  306 (360)
                      ..  ...+. +.+|+|++.+ ...++||+|++.+|||||+...++++++|++||+|+|+|||+||+++|.++.+|++|||
T Consensus       235 ~~--~~~~~~~~~~~l~~~~~~~~~~~p~w~~~~~rrll~~~~~~~~~~Va~dGsg~f~TI~~Av~a~p~~~~~r~vI~i  312 (586)
T PLN02314        235 GI--LSDLGIPIHRRLLSFHHDLSSGFPSWVNIGDRRLLQEEKPTPNVTVAKDGSGDVKTINEAVASIPKKSKSRFVIYV  312 (586)
T ss_pred             cc--cccccccccccccccccccccCCCccccccchhhccccCCCccEEECCCCCCCccCHHHHHhhccccCCceEEEEE
Confidence            54  22221 1468888642 12358999999999999998889999999999999999999999999999999999999


Q ss_pred             ecCeeEEEEEEcCCCCCEEEEecCCCCeEEEcCCcccCCCCCcCceEEEEec
Q 018173          307 KAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVGKFI  358 (360)
Q Consensus       307 ~~G~Y~E~v~i~~~~~~i~l~G~g~~~tii~~~~~~~~g~~t~~saT~~v~~  358 (360)
                      |||+|+|+|.||++|+||||+|+|+++|||+|++++.||.+||.||||+|.+
T Consensus       313 k~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v~~  364 (586)
T PLN02314        313 KEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAAAG  364 (586)
T ss_pred             cCceEEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEEEc
Confidence            9999999999999999999999999999999999999999999999999986

>PLN02468 putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02484 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02313 Pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02217 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02990 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02197 pectinesterase	Back alignment and domain information

>PLN02745 Putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02506 putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02301 pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02713 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02416 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02708 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02995 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional	Back alignment and domain information

>PLN02933 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02488 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02201 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02170 probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02698 Probable pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>PLN02916 pectinesterase family protein	Back alignment and domain information

>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor	Back alignment and domain information

>TIGR01614 PME_inhib pectinesterase inhibitor domain	Back alignment and domain information

>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues	Back alignment and domain information

>PLN02671 pectinesterase	Back alignment and domain information

>PLN02682 pectinesterase family protein	Back alignment and domain information

>PLN02304 probable pectinesterase	Back alignment and domain information

>PLN02665 pectinesterase family protein	Back alignment and domain information

>PLN02634 probable pectinesterase	Back alignment and domain information

>PLN02497 probable pectinesterase	Back alignment and domain information

>PLN02773 pectinesterase	Back alignment and domain information

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3	Back alignment and domain information

>PLN02176 putative pectinesterase	Back alignment and domain information

>PLN02432 putative pectinesterase	Back alignment and domain information

>PRK10531 acyl-CoA thioesterase; Provisional	Back alignment and domain information

>PLN02480 Probable pectinesterase	Back alignment and domain information

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein	Back alignment and domain information

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans	Back alignment and domain information

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A	Back alignment and domain information

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A	Back alignment and domain information

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		360
1gq8_A		319	Pectin Methylesterase From Carrot Length = 319		2e-28
1xg2_A		317	Crystal Structure Of The Complex Between Pectin Met		8e-18

>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319

Back alignment and structure

Iteration: 1

Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/88 (69%), Positives = 69/88 (78%) Query: 267 SSSVTPNVVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMF 326 SS+V PNVVVAADGSG++KT P+ RY+IRIKAGVYRENV+V KK KNIMF Sbjct: 2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61 Query: 327 IGDGRTRTIITGSRNVVDGSTTFKSATV 354 +GDGRT TIIT S+NV DGSTTF SATV Sbjct: 62 LGDGRTSTIITASKNVQDGSTTFNSATV 89

PyMOL of 1gq8

>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		360
1gq8_A		319	Pectinesterase; hydrolase, carboxylic ester hydrol	8e-45
1xg2_A		317	Pectinesterase 1; protein-protein complex, beta he	7e-41
3uw0_A		364	Pectinesterase; right-handed beta-helix, carbohydr	7e-38
1xg2_B		153	Pectinesterase inhibitor; protein-protein complex,	4e-36
1x91_A		153	Invertase/pectin methylesterase inhibitor family p	4e-33
2nsp_A		342	Pectinesterase A; michaelis complex, hydrolase; HE	6e-32
2cj4_A		150	Invertase inhibitor; protein binding, four-helix b	1e-27
3grh_A		422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	4e-26
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319	Back alignment and structure

 Score =  155 bits (394), Expect = 8e-45
 Identities = 67/90 (74%), Positives = 77/90 (85%)

Query: 266 QSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIM 325
           +SS+V PNVVVAADGSG++KTV+ AVAAAP+    RY+IRIKAGVYRENV+V KK KNIM
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 326 FIGDGRTRTIITGSRNVVDGSTTFKSATVG 355
           F+GDGRT TIIT S+NV DGSTTF SATV 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVA 90

PyMOL of 1gq8

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317	Back alignment and structure

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364	Back alignment and structure

>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153	Back alignment and structure

>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153	Back alignment and structure

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342	Back alignment and structure

>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150	Back alignment and structure

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		360
1xg2_B		153	Pectinesterase inhibitor; protein-protein complex,	99.98
1x91_A		153	Invertase/pectin methylesterase inhibitor family p	99.97
2cj4_A		150	Invertase inhibitor; protein binding, four-helix b	99.97
1xg2_A		317	Pectinesterase 1; protein-protein complex, beta he	99.89
1gq8_A		319	Pectinesterase; hydrolase, carboxylic ester hydrol	99.88
3grh_A		422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	99.82
2nsp_A		342	Pectinesterase A; michaelis complex, hydrolase; HE	99.81
3uw0_A		364	Pectinesterase; right-handed beta-helix, carbohydr	99.81
1ru4_A		400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	97.83
1dbg_A		506	Chondroitinase B; beta helix, polysaccharide lyase	97.26
2pyg_A		377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	95.03
2inu_A		410	Insulin fructotransferase; right-handed parallel b	92.92
3eqn_A		758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	86.55

>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}	Back alignment and structure

Probab=99.98  E-value=6.5e-32  Score=233.02  Aligned_cols=149  Identities=22%  Similarity=0.392  Sum_probs=136.4

Q ss_pred             hHHHHhccCCCCChhchHHHhhcCCCcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHH
Q 018173           66 HAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETI  145 (360)
Q Consensus        66 ~~~v~~~C~~T~yp~~C~ssLs~~~~s~~~~~dp~~l~~~al~~a~~~~~~a~~~~~~l~~~~~~~~~~k~AL~dC~el~  145 (360)
                      .+.|+.+|+.|+||++|+++|++.|++  ...+|.+|+++++++++.++..+...+.++.. ...+++.+.||+||.|+|
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~--~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~-~~~~~~~~~al~dC~e~y   79 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRS--ASKDLKGLGQFSIDIAQASAKQTSKIIASLTN-QATDPKLKGRYETCSENY   79 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTG--GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999987  56799999999999999999999999999876 335899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccccchhHHHHHHHHHHhhhhhhhhhcCCCCCCcccccccchhhHHHHHHHHhHHHHHh
Q 018173          146 DETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIK  225 (360)
Q Consensus       146 ~~Ald~L~~s~~~l~~~~~~~~~~~~~~Dl~twLSAAlT~q~TC~DgF~~~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~  225 (360)
                      ++++++|++++.+|..+        .++|++||||+|++|++||+|||.+.  . .++++|...+.++.+|++|+|||++
T Consensus        80 ~~a~~~L~~a~~~l~~~--------~~~d~~t~lSaAlt~~~tC~dgf~~~--~-~~~~~l~~~~~~~~~l~s~aLai~~  148 (153)
T 1xg2_B           80 ADAIDSLGQAKQFLTSG--------DYNSLNIYASAAFDGAGTCEDSFEGP--P-NIPTQLHQADLKLEDLCDIVLVISN  148 (153)
T ss_dssp             HHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHHHHCCSS--S-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHhcccchHHHHhccC--C-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864        48999999999999999999999874  1 4678899999999999999999999


Q ss_pred             hcc
Q 018173          226 NMT  228 (360)
Q Consensus       226 ~l~  228 (360)
                      .+.
T Consensus       149 ~l~  151 (153)
T 1xg2_B          149 LLP  151 (153)
T ss_dssp             HCC
T ss_pred             Hhc
Confidence            875

PyMOL of 1xg2

>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A	Back alignment and structure

>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*	Back alignment and structure

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}	Back alignment and structure

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5	Back alignment and structure

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}	Back alignment and structure

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A	Back alignment and structure

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}	Back alignment and structure

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9	Back alignment and structure

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*	Back alignment and structure

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*	Back alignment and structure

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*	Back alignment and structure

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		360
d1gq8a_		319	b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (	4e-39
d1x91a_		149	a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P	6e-32
d2cj4a1		147	a.29.6.1 (A:4-150) Invertase inhibitor {Common tob	2e-27
d1qjva_		342	b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia	2e-25
d1ru4a_		400	b.80.1.9 (A:) Pectate transeliminase {Erwinia chry	2e-05
d1ofla_		481	b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin	0.002

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319	Back information, alignment and structure


class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  139 bits (351), Expect = 4e-39
 Identities = 67/92 (72%), Positives = 77/92 (83%)

Query: 266 QSSSVTPNVVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIM 325
           +SS+V PNVVVAADGSG++KTV+ AVAAAP+    RY+IRIKAGVYRENV+V KK KNIM
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 326 FIGDGRTRTIITGSRNVVDGSTTFKSATVGKF 357
           F+GDGRT TIIT S+NV DGSTTF SATV   
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAV 92

PyMOL of d1gq8a_

>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149	Back information, alignment and structure

>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147	Back information, alignment and structure

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342	Back information, alignment and structure

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400	Back information, alignment and structure

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		360
d2cj4a1		147	Invertase inhibitor {Common tobacco (Nicotiana tab	99.96
d1x91a_		149	Pectin methylesterase inhibitor 1, PMEI1 {Thale cr	99.96
d1gq8a_		319	Pectin methylesterase PemA {Carrot (Daucus carota)	99.92
d1qjva_		342	Pectin methylesterase PemA {Erwinia chrysanthemi [	99.72
d1ru4a_		400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.85
d1ofla_		481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	97.31
d1bhea_		376	Polygalacturonase {Erwinia carotovora, subsp. caro	91.92

>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Plant invertase/pectin methylesterase inhibitor
family: Plant invertase/pectin methylesterase inhibitor
domain: Invertase inhibitor
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.96  E-value=9.4e-30  Score=216.57  Aligned_cols=144  Identities=16%  Similarity=0.259  Sum_probs=132.3

Q ss_pred             HHHHhccCCCCChhchHHHhhcCCCcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q 018173           67 AILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETID  146 (360)
Q Consensus        67 ~~v~~~C~~T~yp~~C~ssLs~~~~s~~~~~dp~~l~~~al~~a~~~~~~a~~~~~~l~~~~~~~~~~k~AL~dC~el~~  146 (360)
                      ++|+.+|++|+||++|+++|.++|++  ..++|++|+.++++++++++..+..++.++.. ...+++.+.||++|.|+|+
T Consensus         2 ~lI~~~C~~T~~~~~C~~sL~~~p~s--~~ad~~~la~~av~~a~~~a~~~~~~i~~l~~-~~~~~~~~~al~~C~e~y~   78 (147)
T d2cj4a1           2 NLVETTCKNTPNYQLCLKTLLSDKRS--ATGDITTLALIMVDAIKAKANQAAVTISKLRH-SNPPAAWKGPLKNCAFSYK   78 (147)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTSGGG--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCCCGGGHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCcHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999987  67799999999999999999999999999876 5678999999999999999


Q ss_pred             HHHH-HHHHHHHHHhcCCCccccccchhHHHHHHHHHHhhhhhhhhhcCCCCCCcccccccchhhHHHHHHHHhHHHHHh
Q 018173          147 ETLD-ELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIK  225 (360)
Q Consensus       147 ~Ald-~L~~s~~~l~~~~~~~~~~~~~~Dl~twLSAAlT~q~TC~DgF~~~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~  225 (360)
                      ++++ .|+.+...+..+        .++++++|||+|+++++||+|||.+.      +++|...++++.+|++|+|+|++
T Consensus        79 ~av~~~l~~a~~~l~~~--------~~~~~~~~lsaa~~~~~tC~d~f~~~------~spl~~~~~~~~~l~~ial~i~~  144 (147)
T d2cj4a1          79 VILTASLPEAIEALTKG--------DPKFAEDGMVGSSGDAQECEEYFKGS------KSPFSALNIAVHELSDVGRAIVR  144 (147)
T ss_dssp             HHHHTHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHHTTTTS------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhHHHHhhHHhCCC------CCcHHHHHHHHHHHHHHHHHHHH
Confidence            9997 589999998765        58999999999999999999999752      57899999999999999999998


Q ss_pred             hc
Q 018173          226 NM  227 (360)
Q Consensus       226 ~l  227 (360)
                      .|
T Consensus       145 ~L  146 (147)
T d2cj4a1         145 NL  146 (147)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

PyMOL of d2cj4a1

>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}	Back information, alignment and structure

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}	Back information, alignment and structure

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}	Back information, alignment and structure