Citrus Sinensis ID: 018213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccccccHHHHHHcccEEEEEcccHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHccccEEEccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccHHHHHHHccccccccccccccccccccccccEEEEEHHHHHHccccccccHHHcEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEEcccccHHEEEEccccHHcccccccEEEEcccccHHHHHHHHHHHHHccccEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHcccHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTLLVKSsyshrflssstpamsvcssfcpqlpsyfrqkpinslptkplfplsfkvfssqatgvsaeadelpgrigflgmgimgtPMAQNLLKagcdvtvwnrtkskcdplislgakyqpspdevaaSCDVTFamladpesamdvacgkhgaasgmgpgkgyvdvstvdgdtsklinghikatgasfleapvsgskkpaedGQLIFLAAGDKSLYNTVAPLldimgksrfylgdvgngaAMKLVVNMIMGSMMATFSEGLlhsekvgldpnVLVEVVSQgaisapmyslkgpsmieslyptafplkhQQKDLRLALGLaesvsqstPIAAAANELYKVAkshglsdeDFSAVIEALKAKK
Flexible Loop (DISEMBL)
MTLLVKSSYSHRflssstpamsVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Low Complexity Region (SEG)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Disordered region (IsUnstruct)
*********************SVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP**DEVAASCDVTFAMLADP**AMDVACGK**********KGYVDVSTVDGDTSKLINGHIKATGASFL*************GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE*******IAAAANELYKV**********************
Disordered Region (DISOPRED)
*************************************************************************IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA**
Disordered Region (DISEMBL)
**********************VCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Disordered Region (DISPRO)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
F4I907	358	Glyoxylate/succinic semia	yes	no	0.930	0.932	0.773	1e-147
Q9LSV0	289	Glyoxylate/succinic semia	no	no	0.791	0.982	0.584	3e-89
Q5ZLS7	553	Putative oxidoreductase G	yes	no	0.933	0.605	0.419	1e-70
Q5RKH0	552	Putative oxidoreductase G	yes	no	0.933	0.606	0.416	2e-70
A4FUF0	553	Putative oxidoreductase G	yes	no	0.844	0.547	0.445	2e-70
Q49A26	553	Putative oxidoreductase G	yes	no	0.844	0.547	0.445	4e-70
Q5R7T2	553	Putative oxidoreductase G	yes	no	0.844	0.547	0.438	6e-69
Q562D5	534	Putative oxidoreductase G	yes	no	0.785	0.528	0.460	1e-67
Q922P9	546	Putative oxidoreductase G	yes	no	0.827	0.543	0.435	3e-66
Q5RKN4	462	Putative oxidoreductase G	yes	no	0.844	0.655	0.421	4e-66

>sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/335 (77%), Positives = 292/335 (87%), Gaps = 1/335 (0%)

Query: 26  SFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG-RIGFLGMGIMGT 84
           S CP++P  FR KPI+   +KP   L+++V+SS  +   +  DEL    IGFLGMGIMG+
Sbjct: 20  SICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGMGIMGS 79

Query: 85  PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144
           PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPESA+DV
Sbjct: 80  PMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDV 139

Query: 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 204
           ACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 140 ACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAEDGQLI 199

Query: 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 264
           FL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+L S+K
Sbjct: 200 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGILLSQK 259

Query: 265 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 324
           VGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQS
Sbjct: 260 VGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQS 319

Query: 325 TPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           TPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 320 TPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1

>sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 202/284 (71%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 2   EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 62  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 121

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 122 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 181

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 182 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 241

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 242 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 1

>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/346 (41%), Positives = 206/346 (59%), Gaps = 11/346 (3%)

Query: 9   YSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEAD 68
           + H FL S T   +VC            Q     L        S  + ++ +T V+    
Sbjct: 216 HFHHFLLSQTEKPAVCY-----------QAITKKLKVCEEETGSTSIQAADSTAVNGSIT 264

Query: 69  ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
               +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++C
Sbjct: 265 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTC 324

Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188
           D+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLE
Sbjct: 325 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 384

Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
           APVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ 
Sbjct: 385 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 444

Query: 249 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 308
           GS MAT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ Q
Sbjct: 445 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQ 504

Query: 309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 354
           KDLRLA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 505 KDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/346 (41%), Positives = 206/346 (59%), Gaps = 11/346 (3%)

Query: 9   YSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEAD 68
           + H FL S T   +VC            Q     L        S  + ++ +T V+    
Sbjct: 215 HFHHFLLSQTEKPAVCY-----------QAITKKLKICEEETGSTSIQAADSTAVNGSIT 263

Query: 69  ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
               +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++C
Sbjct: 264 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTC 323

Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188
           D+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLE
Sbjct: 324 DITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 383

Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
           APVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ 
Sbjct: 384 APVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ 443

Query: 249 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 308
           GS MAT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ Q
Sbjct: 444 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQ 503

Query: 309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 354
           KDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 504 KDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 195/303 (64%)

Query: 52  SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
           S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct: 248 STSIQAADSTAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
             GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
              +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query: 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
           G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct: 428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query: 292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct: 488 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query: 352 IEA 354
             A
Sbjct: 548 YRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 194/303 (64%)

Query: 52  SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
           S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
             GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
              +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query: 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
           G+VGN A M L+VNM+ GS MAT +EGL  +   G     L+++++QG +++     K  
Sbjct: 428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query: 292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct: 488 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query: 352 IEA 354
             A
Sbjct: 548 YRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2

 Score =  261 bits (667), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 194/303 (64%)

Query: 52  SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
           S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVW+RT  KCD  I
Sbjct: 248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFI 307

Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
             GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ P K YVD+STVD DT
Sbjct: 308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADT 367

Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
              +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct: 368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query: 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
           G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct: 428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query: 292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct: 488 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query: 352 IEA 354
             A
Sbjct: 548 YRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 186/282 (65%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA    +P EV ++CD+TF
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           A +ADP++A D+  G  G   G+ PGK YVD+STVD +T   +   I + G  FLEAPVS
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVS 369

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G+++ + DG L+ LAAGD+ +Y   +     MGK+ F+LG+VGN A M L++NM+ GS M
Sbjct: 370 GNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFM 429

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           AT +EG+  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 430 ATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 489

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 354
           LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 490 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 531

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1

 Score =  252 bits (644), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/303 (43%), Positives = 192/303 (63%), Gaps = 6/303 (1%)

Query: 52  SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
           S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  K     
Sbjct: 247 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK----- 301

Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
             GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct: 302 -EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 360

Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
              +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct: 361 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 420

Query: 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
           G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct: 421 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 480

Query: 292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct: 481 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 540

Query: 352 IEA 354
             A
Sbjct: 541 YRA 543

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1

 Score =  252 bits (643), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 193/304 (63%), Gaps = 1/304 (0%)

Query: 52  SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
           S  + ++ +T ++        RIGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct: 156 STSIQAADSTAINGSITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFI 215

Query: 112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
             GA+   +P EV + CD+TF+ ++DP++A D+  G  G   G+ PGK YV++STVD +T
Sbjct: 216 QEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPET 275

Query: 172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
              ++  I + G  FLEAPVSGS++ + DG L+ +AAGD+S+Y   +     MGK+ F++
Sbjct: 276 ITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFI 335

Query: 232 -GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG 290
            G+ GN A M L++NM+ GS MAT +EGL  ++  G      ++++ QG +++     K 
Sbjct: 336 AGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKC 395

Query: 291 PSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSA 350
            ++++  +   + LKH QKDLRLA+ + +SV+  TP+AAAANE+YK AK+   SD D SA
Sbjct: 396 QNILQGNFKPDYYLKHIQKDLRLAISMGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSA 455

Query: 351 VIEA 354
           V  A
Sbjct: 456 VYRA 459

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
255560761	348	3-hydroxyisobutyrate dehydrogenase, puta	0.961	0.991	0.815	1e-162
449458161	356	PREDICTED: putative oxidoreductase GLYR1	0.983	0.991	0.815	1e-161
225442309	365	PREDICTED: putative oxidoreductase GLYR1	0.977	0.961	0.794	1e-158
297743096	343	unnamed protein product [Vitis vinifera]	0.930	0.973	0.820	1e-156
350538543	363	succinic semialdehyde reductase isofom2	0.935	0.925	0.781	1e-151
297850160	341	hypothetical protein ARALYDRAFT_471975 [	0.944	0.994	0.770	1e-148
356550426	333	PREDICTED: putative oxidoreductase GLYR1	0.807	0.870	0.886	1e-147
20260472	343	unknown protein [Arabidopsis thaliana] g	0.941	0.985	0.767	1e-146
357454619	339	hypothetical protein MTR_2g099910 [Medic	0.902	0.955	0.774	1e-146
79346256	358	glyoxylate reductase 2 [Arabidopsis thal	0.930	0.932	0.773	1e-146

>gi|255560761|ref|XP_002521394.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223539472|gb|EEF41062.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 292/358 (81%), Positives = 312/358 (87%), Gaps = 13/358 (3%)

Query: 1   MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
           MTLLVK + SH  LS+      +CSSFCPQLPS+ R  PI+S  T+     SFK FS  A
Sbjct: 1   MTLLVKINNSHSLLST------MCSSFCPQLPSHLRAIPISSFLTRQ----SFKAFSVSA 50

Query: 61  TGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
              S +AD    R+GFLGMGIMGTPM QNL+KAGCDVTVWNRTKSKCDPLISLGAKY+PS
Sbjct: 51  ---SVKADGSSTRVGFLGMGIMGTPMTQNLIKAGCDVTVWNRTKSKCDPLISLGAKYRPS 107

Query: 121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180
           P+EVAA+ DVTFAMLADPESA++VACGK+GAA GMGPGKGYVDVSTVDG TSKLI GHIK
Sbjct: 108 PEEVAAASDVTFAMLADPESAVEVACGKNGAAGGMGPGKGYVDVSTVDGGTSKLIGGHIK 167

Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
           ATGASFLEAPVSGSKKPAEDGQLIFL AGDK LY  VAP LDIMGKSRFYLGDVGNGAAM
Sbjct: 168 ATGASFLEAPVSGSKKPAEDGQLIFLTAGDKPLYEIVAPFLDIMGKSRFYLGDVGNGAAM 227

Query: 241 KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT 300
           KLVVNMIMGSMMATFSEG+L  EKVGLDPNV+VEVVSQGAISAPMYS+KGPSMI+S+YPT
Sbjct: 228 KLVVNMIMGSMMATFSEGILLGEKVGLDPNVIVEVVSQGAISAPMYSMKGPSMIKSIYPT 287

Query: 301 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           AFPLKHQQKDLRLALGLAESVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 288 AFPLKHQQKDLRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDSDFSAVIEALKVK 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458161|ref|XP_004146816.1| PREDICTED: putative oxidoreductase GLYR1-like [Cucumis sativus]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/358 (81%), Positives = 313/358 (87%), Gaps = 5/358 (1%)

Query: 1   MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
           MT LV++ YSH  LSS+  AMS  SSFCP LP +F  +PI   PTKP F LSFK FS QA
Sbjct: 1   MTFLVRAPYSHH-LSSTAIAMS--SSFCPHLPLHFGTRPIFYFPTKPSFSLSFKPFSVQA 57

Query: 61  TGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
           T  S+  +EL  R+GFLG+GIMGTPMAQNL+K+GCDVTVWNRTKSKCDPLI+LGAKYQ S
Sbjct: 58  TNASSGKEEL--RVGFLGLGIMGTPMAQNLIKSGCDVTVWNRTKSKCDPLINLGAKYQSS 115

Query: 121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180
           P EVAASCDVTFAMLADP SA++VACG++GAASGM PGKGYVDVSTVD  TSKLI+  IK
Sbjct: 116 PQEVAASCDVTFAMLADPNSALEVACGENGAASGMSPGKGYVDVSTVDDTTSKLISARIK 175

Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
            TGA FLEAPVSGSKKPAEDGQLIFL AGDKSLY TVAP LDIMGKSRFYLGDVGNGAAM
Sbjct: 176 DTGALFLEAPVSGSKKPAEDGQLIFLTAGDKSLYETVAPFLDIMGKSRFYLGDVGNGAAM 235

Query: 241 KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT 300
           KLVVNMIMGSMMA FSEGLL SEKVGLDPN +VEVVSQGAISAPMY LKGP+MI+S YPT
Sbjct: 236 KLVVNMIMGSMMAAFSEGLLLSEKVGLDPNDVVEVVSQGAISAPMYKLKGPAMIKSQYPT 295

Query: 301 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS GLSD+DFSAVIEALK K
Sbjct: 296 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSRGLSDQDFSAVIEALKVK 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442309|ref|XP_002280297.1| PREDICTED: putative oxidoreductase GLYR1-like [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/360 (79%), Positives = 315/360 (87%), Gaps = 9/360 (2%)

Query: 4   LVKSSYSHRFLSSSTPA---MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSS 58
           LVKS   +  L+ S  A   M++CSSFCP Q+P++FR   PI S   KP    SFK FSS
Sbjct: 3   LVKSHCCYNLLNPSNTASLAMAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSS 59

Query: 59  QATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ 118
           Q T  ++  DE P R+GFLG+GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+
Sbjct: 60  Q-TATASTKDEFPARVGFLGLGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYK 118

Query: 119 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 178
            SP+EVAASCDVTFAMLADPESA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI  H
Sbjct: 119 SSPEEVAASCDVTFAMLADPESAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEH 178

Query: 179 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGA 238
           IKATGA FLEAPVSGSKKPAEDGQLIFL  GDKSLY TVAPLLDIMGKSRF+LG VGNGA
Sbjct: 179 IKATGALFLEAPVSGSKKPAEDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGA 238

Query: 239 AMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLY 298
           AMKLVVNM+MGSMMA+FSEGLL  EKVGLDP+V+VEV+SQGAISAPM+S+KGPSM++S+Y
Sbjct: 239 AMKLVVNMVMGSMMASFSEGLLLGEKVGLDPDVIVEVISQGAISAPMFSMKGPSMVKSVY 298

Query: 299 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           PTAFPLKHQQKDLRLALGLAESVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 299 PTAFPLKHQQKDLRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDHDFSAVIEALKVK 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743096|emb|CBI35963.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/340 (82%), Positives = 306/340 (90%), Gaps = 6/340 (1%)

Query: 21  MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLG 78
           M++CSSFCP Q+P++FR   PI S   KP    SFK FSSQ T  ++  DE P R+GFLG
Sbjct: 1   MAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSSQ-TATASTKDEFPARVGFLG 56

Query: 79  MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138
           +GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+ SP+EVAASCDVTFAMLADP
Sbjct: 57  LGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYKSSPEEVAASCDVTFAMLADP 116

Query: 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198
           ESA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI  HIKATGA FLEAPVSGSKKPA
Sbjct: 117 ESAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEHIKATGALFLEAPVSGSKKPA 176

Query: 199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEG 258
           EDGQLIFL  GDKSLY TVAPLLDIMGKSRF+LG VGNGAAMKLVVNM+MGSMMA+FSEG
Sbjct: 177 EDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAAMKLVVNMVMGSMMASFSEG 236

Query: 259 LLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLA 318
           LL  EKVGLDP+V+VEV+SQGAISAPM+S+KGPSM++S+YPTAFPLKHQQKDLRLALGLA
Sbjct: 237 LLLGEKVGLDPDVIVEVISQGAISAPMFSMKGPSMVKSVYPTAFPLKHQQKDLRLALGLA 296

Query: 319 ESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           ESVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 297 ESVSQPTPIAAAANELYKVAKSHGLSDHDFSAVIEALKVK 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538543|ref|NP_001233836.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum] gi|171854591|dbj|BAG16486.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/339 (78%), Positives = 300/339 (88%), Gaps = 3/339 (0%)

Query: 21  MSVCSSFCPQLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGM 79
           M++CS+FCP+L  +   +K ++  P K  F ++ K FSSQ +  + +AD+LP  IGFLG+
Sbjct: 1   MAMCSTFCPRLSFHLNCKKSLSLFPVKHRFFVTIKAFSSQTS--APKADDLPASIGFLGL 58

Query: 80  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 139
           GIMG PMAQNL+KAGCDVTVWNRTKSKC+PLISLGAKY+ SP+EVAASCDVTFAMLADPE
Sbjct: 59  GIMGNPMAQNLIKAGCDVTVWNRTKSKCEPLISLGAKYKSSPEEVAASCDVTFAMLADPE 118

Query: 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199
           SA DVACGK+GAA GMGPGKGYVD STVDG+TSKLI  HI+ATGA FLEAPVSGSKKPAE
Sbjct: 119 SAADVACGKYGAAKGMGPGKGYVDASTVDGETSKLICEHIRATGAHFLEAPVSGSKKPAE 178

Query: 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 259
           DGQLIFL AGD  LY+  APLLDIMGKSRFYLG+VGNGAAMKLVVNM+MGSMMA+F+EGL
Sbjct: 179 DGQLIFLTAGDSVLYDKAAPLLDIMGKSRFYLGEVGNGAAMKLVVNMVMGSMMASFAEGL 238

Query: 260 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 319
           + SEKVGLDP+VLVEV+SQGAISAPMY++KGPSM++S YPTAFPLKHQQKDLRLALGLAE
Sbjct: 239 VLSEKVGLDPSVLVEVISQGAISAPMYAVKGPSMVKSSYPTAFPLKHQQKDLRLALGLAE 298

Query: 320 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           SVSQ  PIAAA NELYKVAKSHGLSD+DFSAVIEALK K
Sbjct: 299 SVSQPIPIAAATNELYKVAKSHGLSDQDFSAVIEALKVK 337

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850160|ref|XP_002892961.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata] gi|297338803|gb|EFH69220.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/340 (77%), Positives = 296/340 (87%), Gaps = 1/340 (0%)

Query: 21  MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG-RIGFLGM 79
           M++CS FCP++P  FR KP +   +KP   LS++V+SS  +   +  DEL    IGFLGM
Sbjct: 1   MALCSIFCPRIPLRFRPKPKSPFLSKPQICLSYRVYSSLQSTTPSTKDELGTVSIGFLGM 60

Query: 80  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 139
           GIMG+PMAQNL+KAGCDVTVWNR+KSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPE
Sbjct: 61  GIMGSPMAQNLIKAGCDVTVWNRSKSKCDPLVRLGAKYKSSPEEVTATCDLTFAMLADPE 120

Query: 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199
           SA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAE
Sbjct: 121 SAIDVACGKNGAVFGISSGKGYVDVSTVDAASSILISKQIKDTGALFLEAPVSGSKKPAE 180

Query: 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 259
           DGQLIFL AGDK LY   AP LDIMGKSRFYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+
Sbjct: 181 DGQLIFLTAGDKLLYEKAAPFLDIMGKSRFYLGEVGNGAAMKLVVNMIMGSMMASFAEGI 240

Query: 260 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 319
           L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAE
Sbjct: 241 LLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAE 300

Query: 320 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           SVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 301 SVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550426|ref|XP_003543588.1| PREDICTED: putative oxidoreductase GLYR1-like [Glycine max]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/290 (88%), Positives = 277/290 (95%)

Query: 69  ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
           E P RIGFLG+GIMG+PMA NLLKAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASC
Sbjct: 37  EPPARIGFLGLGIMGSPMAHNLLKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASC 96

Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188
           DVTFAMLADP+SA+DVACGKHGAA+GMGPGKGYVDVSTVDGDTSKLINGH+K+TGA FLE
Sbjct: 97  DVTFAMLADPQSAVDVACGKHGAANGMGPGKGYVDVSTVDGDTSKLINGHMKSTGALFLE 156

Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
           APVSGSKKPAEDGQLIFL AGDK+LY  V  LLDIMGKS+FYLGDVGNGAAMKLVVNMIM
Sbjct: 157 APVSGSKKPAEDGQLIFLTAGDKNLYEAVGSLLDIMGKSKFYLGDVGNGAAMKLVVNMIM 216

Query: 249 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 308
           GSMMA+FSEGLL SEKVGLDP+VLV+VVSQGAISAPMYS KGPSMI+SLYPTAFPLKHQQ
Sbjct: 217 GSMMASFSEGLLLSEKVGLDPDVLVQVVSQGAISAPMYSTKGPSMIQSLYPTAFPLKHQQ 276

Query: 309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           KDLRLALGLAESVSQ TPIA+AANELYKVAKS+GLSD+DFSAVIEALK+K
Sbjct: 277 KDLRLALGLAESVSQPTPIASAANELYKVAKSNGLSDQDFSAVIEALKSK 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20260472|gb|AAM13134.1| unknown protein [Arabidopsis thaliana] gi|21553816|gb|AAM62909.1| unknown [Arabidopsis thaliana] gi|30984568|gb|AAP42747.1| At1g17650 [Arabidopsis thaliana]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 296/340 (87%), Gaps = 2/340 (0%)

Query: 21  MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG-RIGFLGM 79
           M++CS  CP++P  FR KPI+   +KP   L+++V+SS  +   +  DEL    IGFLGM
Sbjct: 1   MALCS-ICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGM 59

Query: 80  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 139
           GIMG+PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPE
Sbjct: 60  GIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPE 119

Query: 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199
           SA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAE
Sbjct: 120 SAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAE 179

Query: 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 259
           DGQLIFL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+
Sbjct: 180 DGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGI 239

Query: 260 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 319
           L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAE
Sbjct: 240 LLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAE 299

Query: 320 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           SVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 300 SVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454619|ref|XP_003597590.1| hypothetical protein MTR_2g099910 [Medicago truncatula] gi|355486638|gb|AES67841.1| hypothetical protein MTR_2g099910 [Medicago truncatula]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/341 (77%), Positives = 288/341 (84%), Gaps = 17/341 (4%)

Query: 24  CSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSA------EADELPGRIGFL 77
           CS F   + S F     NS              S   + VSA      +  + P RIGFL
Sbjct: 3   CSQFATTMRSAFSLHHFNS-----------PRLSRHVSNVSASLQPQGQGTDTPPRIGFL 51

Query: 78  GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 137
           G+GIMGTPMA NL+KAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASCD+TFAMLAD
Sbjct: 52  GLGIMGTPMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLAD 111

Query: 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197
           P+SA+DVACGKHG A+G+GPGKGYVDVSTVD DTSKLINGHIK+TGA FLEAPVSGSKKP
Sbjct: 112 PQSAVDVACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKP 171

Query: 198 AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSE 257
           AEDGQLIFL AGD++LY TVAP LDIMGKS+FYLGDVGNGAAMKLVVNMIMGSMMA+FSE
Sbjct: 172 AEDGQLIFLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSE 231

Query: 258 GLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGL 317
           GLL SEKVGLDP VLVEV+SQGAI+APMYS+KGPSMI+S YPTAFPLKHQQKDLRLALGL
Sbjct: 232 GLLLSEKVGLDPKVLVEVISQGAINAPMYSMKGPSMIQSNYPTAFPLKHQQKDLRLALGL 291

Query: 318 AESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           AESVSQ  PIAAAANELYKVAKSHG SDEDFSAVIEALK+K
Sbjct: 292 AESVSQPIPIAAAANELYKVAKSHGYSDEDFSAVIEALKSK 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79346256|ref|NP_564030.2| glyoxylate reductase 2 [Arabidopsis thaliana] gi|449061823|sp|F4I907.1|GLYR2_ARATH RecName: Full=Glyoxylate/succinic semialdehyde reductase 2, chloroplastic; Short=AtGLYR2; Short=AtGR2; Short=SSA reductase 2; Flags: Precursor gi|332191497|gb|AEE29618.1| glyoxylate reductase 2 [Arabidopsis thaliana]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/335 (77%), Positives = 292/335 (87%), Gaps = 1/335 (0%)

Query: 26  SFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG-RIGFLGMGIMGT 84
           S CP++P  FR KPI+   +KP   L+++V+SS  +   +  DEL    IGFLGMGIMG+
Sbjct: 20  SICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGMGIMGS 79

Query: 85  PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144
           PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPESA+DV
Sbjct: 80  PMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDV 139

Query: 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 204
           ACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 140 ACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAEDGQLI 199

Query: 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 264
           FL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+L S+K
Sbjct: 200 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGILLSQK 259

Query: 265 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 324
           VGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQS
Sbjct: 260 VGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQS 319

Query: 325 TPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           TPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 320 TPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2007923	358	GLYR2 "glyoxylate reductase 2"	0.963	0.966	0.764	4.1e-136
TAIR|locus:2094518	289	GLYR1 "glyoxylate reductase 1"	0.788	0.979	0.586	3.6e-82
TIGR_CMR|GSU_1372	286	GSU_1372 "3-hydroxyisobutyrate	0.785	0.986	0.539	2.7e-77
UNIPROTKB|F1NFS2	575	GLYR1 "Putative oxidoreductase	0.844	0.526	0.448	2.2e-66
UNIPROTKB|F1NFS3	553	GLYR1 "Putative oxidoreductase	0.844	0.547	0.448	2.2e-66
UNIPROTKB|Q5ZLS7	553	GLYR1 "Putative oxidoreductase	0.844	0.547	0.448	2.2e-66
UNIPROTKB|A4FUF0	553	GLYR1 "Putative oxidoreductase	0.844	0.547	0.445	3.6e-66
UNIPROTKB|E2QVM3	575	GLYR1 "Uncharacterized protein	0.844	0.526	0.445	4.5e-66
UNIPROTKB|F1RK86	553	GLYR1 "Uncharacterized protein	0.844	0.547	0.445	4.5e-66
UNIPROTKB|I3LMN3	539	GLYR1 "Uncharacterized protein	0.844	0.562	0.445	4.5e-66

TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 266/348 (76%), Positives = 302/348 (86%)

Query:    13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPG 72
             F SSS+ AM++CS  CP++P  FR KPI+   +KP   L+++V+SS  +   +  DEL  
Sbjct:     8 FASSSSKAMALCS-ICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGT 66

Query:    73 -RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
               IGFLGMGIMG+PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+T
Sbjct:    67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126

Query:   132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
             FAMLADPESA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPV
Sbjct:   127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186

Query:   192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM 251
             SGSKKPAEDGQLIFL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSM
Sbjct:   187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSM 246

Query:   252 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 311
             MA+F+EG+L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+
Sbjct:   247 MASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDM 306

Query:   312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
             RLALGLAESVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct:   307 RLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 166/283 (58%), Positives = 202/283 (71%)

Query:    74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
             +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T A
Sbjct:     3 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 62

Query:   134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
             ML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVSG
Sbjct:    63 MLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSG 122

Query:   194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 253
             SKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM 
Sbjct:   123 SKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMN 182

Query:   254 TFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRL 313
              FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+RL
Sbjct:   183 AFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRL 242

Query:   314 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
             AL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct:   243 ALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003858 "3-hydroxybutyrate dehydrogenase activity" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 152/282 (53%), Positives = 195/282 (69%)

Query:    75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
             GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T AM
Sbjct:     5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64

Query:   135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 194
             LADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVSG+
Sbjct:    65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124

Query:   195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 254
             KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM  
Sbjct:   125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184

Query:   255 FSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 314
               EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLRLA
Sbjct:   185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244

Query:   315 LGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
             + L + + Q    AA ANE +K A++ G +DEDF+AV   L+
Sbjct:   245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

GO:0019577 "aldaric acid metabolic process" evidence=ISS

UNIPROTKB|F1NFS2 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 136/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   270 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 329

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   330 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 389

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   390 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 449

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   450 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 509

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   510 NILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 569

Query:   352 IEA 354
               A
Sbjct:   570 YRA 572

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 136/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   488 NILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query:   352 IEA 354
               A
Sbjct:   548 YRA 550

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 136/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   488 NILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query:   352 IEA 354
               A
Sbjct:   548 YRA 550

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 135/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   248 STSIQAADSTAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   488 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query:   352 IEA 354
               A
Sbjct:   548 YRA 550

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QVM3 GLYR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 135/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   270 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 329

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   330 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 389

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   390 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 449

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   450 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 509

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   510 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 569

Query:   352 IEA 354
               A
Sbjct:   570 YRA 572

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RK86 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 135/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   248 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 307

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   308 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 367

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   368 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   428 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 487

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   488 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 547

Query:   352 IEA 354
               A
Sbjct:   548 YRA 550

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LMN3 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 135/303 (44%), Positives = 195/303 (64%)

Query:    52 SFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111
             S  + ++ +T V+        +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I
Sbjct:   234 STSIQAADSTAVNGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 293

Query:   112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171
               GA+   +P EV ++CD+TFA ++DP++A D+  G  G   G+ PGK YVD+STVD DT
Sbjct:   294 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 353

Query:   172 SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                +   I + G  FLEAPVSG+++ + DG L+ LAAGD+ LY   +     MGK+ F+L
Sbjct:   354 VTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 413

Query:   232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP 291
             G+VGN A M L+VNM+ GS MAT +EGL  ++  G     L+++++QG +++     K  
Sbjct:   414 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ 473

Query:   292 SMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
             ++++  +   F LK+ QKDLRLA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV
Sbjct:   474 NILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 533

Query:   352 IEA 354
               A
Sbjct:   534 YRA 536

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I907	GLYR2_ARATH	1, ., 1, ., 1, ., n, 1, 1	0.7731	0.9303	0.9329	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034187001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (343 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	6e-93
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	3e-56
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	6e-54
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	6e-51
TIGR01692	288	TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen	2e-46
PRK15059	292	PRK15059, PRK15059, tartronate semialdehyde reduct	2e-46
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	1e-34
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	6e-26
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	5e-18
PRK12490	299	PRK12490, PRK12490, 6-phosphogluconate dehydrogena	3e-12
COG1023	300	COG1023, Gnd, Predicted 6-phosphogluconate dehydro	3e-10
PRK09599	301	PRK09599, PRK09599, 6-phosphogluconate dehydrogena	9e-08
TIGR00872	298	TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena	5e-06
TIGR00873	467	TIGR00873, gnd, 6-phosphogluconate dehydrogenase (	0.001
COG0345	266	COG0345, ProC, Pyrroline-5-carboxylate reductase [	0.001
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	0.001
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	0.001
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	0.001
PLN02350	493	PLN02350, PLN02350, phosphogluconate dehydrogenase	0.001
COG0362	473	COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca	0.003

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score =  279 bits (715), Expect = 6e-93
 Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 1/285 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVT 131
           +I F+G+GIMG+PMA NLLKAG +VTV+NRT  K  + L + GA    SP E AA  DV 
Sbjct: 2   KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVV 61

Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
             ML D  +   V  G++G   G+ PG   +D+ST+  +T++ +   + A G  FL+APV
Sbjct: 62  ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV 121

Query: 192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM 251
           SG    A  G L  +  GD   +    P+L+ MGK+  ++G VG G A KL  N+++   
Sbjct: 122 SGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGN 181

Query: 252 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 311
           +A  +E L  +EK GLDP+V++EV+S GA  + +    GP M+E  +   F +    KDL
Sbjct: 182 IAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDL 241

Query: 312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
            LAL  A+ +    P+ A A ELY  A + G  +EDFSA+I+ L+
Sbjct: 242 GLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286

Length = 286

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score =  185 bits (471), Expect = 3e-56
 Identities = 91/280 (32%), Positives = 149/280 (53%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMG PM++NLLKAG  + V++R       +I+ GA+   +   VA  CDV  
Sbjct: 4   KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            ML +     +VA G++G   G  PG   +D+S++    S+ I   +KA G   L+APVS
Sbjct: 64  TMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A DG L  +  GDK++++    L+  M  S  + GD+G G   KL   +I+   +
Sbjct: 124 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNI 183

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           A  SE L+ + K G++P+++ + +  G   + +   K P +++  +   F +    KDL 
Sbjct: 184 AAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 243

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 352
            AL  +  V    P+ AA  E+ +  K+ GL   D SA+ 
Sbjct: 244 NALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALA 283

Length = 296

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score =  178 bits (454), Expect = 6e-54
 Identities = 92/284 (32%), Positives = 154/284 (54%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMG+PM+ NL KAG  + V        D L++ GA    +  +V    DV F
Sbjct: 1   KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            M+ D     +VA G++G   G  PGK  VD+S++    SK     +K  G  +L+APVS
Sbjct: 61  TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A +G L  +  GD+++++ V PL + +GK+   +G  G+G   K+   +I+   +
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNI 180

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
              SE L+ + K G+DP  + + +  G   + +  +KG  +I+  +   F +   QKDL 
Sbjct: 181 EAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LAL  A++V  + P  A   EL+   +++G    D SA+++AL+
Sbjct: 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALE 284

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score =  166 bits (424), Expect = 6e-51
 Identities = 66/162 (40%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGF+G+G+MG+PMA NLLKAG  VTV+NRT  K + L++ GA    SP E  AS DV  
Sbjct: 2   KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVI 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            M+    +   V  G+ G   G+ PG   +D ST D D ++     +   G  FL+APVS
Sbjct: 62  TMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPVS 121

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF-YLGD 233
           G ++ AE G L  +  GD+  +  V P+L+ MG     Y+G 
Sbjct: 122 GGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIGP 163

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase

 Score =  159 bits (404), Expect = 2e-46
 Identities = 97/290 (33%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 76  FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135
           F+G+G MG PMA NLLKAG  V V++      +  ++ GA+   SP E A   D    ML
Sbjct: 1   FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60

Query: 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195
              +  + V  G  G    +  G   +D ST+D D+++ +     A GA F++APVSG  
Sbjct: 61  PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120

Query: 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATF 255
             A  G L F+  G    +    P+L  MG++  + GD G G A K+  NM++G  M   
Sbjct: 121 GGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGT 180

Query: 256 SEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG----PSMIESL-----YPTAFPLKH 306
           +E +   EK+GLDP VL E+ +    S   +S       P ++        Y   F    
Sbjct: 181 AEAMALGEKLGLDPKVLFEIANTS--SGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTAL 238

Query: 307 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
             KDL LA   A+S    TP+ A A +LY +    G   +DFS+VI+ L+
Sbjct: 239 MLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288

3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288

>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional

 Score =  159 bits (403), Expect = 2e-46
 Identities = 91/284 (32%), Positives = 152/284 (53%), Gaps = 1/284 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMGTPMA NL +AG  + V        D L+SLGA    +  +V  + D+ F
Sbjct: 2   KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIF 60

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            M+ D     +V  G++G       GK  VD+S++    +K     +   G  +L+APVS
Sbjct: 61  IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS 120

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A +G L  +  GD++++  V PL +++GK+   +G  G+G   K+   +I+   +
Sbjct: 121 GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI 180

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
              SE LL + K G DP  + + +  G  S+ +  + G  MI+  +   F +   QKDL 
Sbjct: 181 EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN 240

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LAL  A++++ + P  A   EL+    ++G S  D SA+++AL+
Sbjct: 241 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALE 284

Length = 292

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score =  128 bits (324), Expect = 1e-34
 Identities = 87/291 (29%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
           I F+G+G MG+PMA NLLK G  + V++      D L+  GA    SP + AA  +    
Sbjct: 4   IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63

Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
           ML + +    V  G++G   G+      +D+ST+    +  +   ++A G S ++ PV  
Sbjct: 64  MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123

Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 253
           +   A  G L+ LA G         P+L  MG      G  G G  +KL+ N +  ++ A
Sbjct: 124 TSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNA 183

Query: 254 TFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLKGPSMIESLYPTAFPLKH 306
             +E  +  E +GL  +V ++V+S  A        + P   LKG      L P AF +  
Sbjct: 184 LSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKG-----DLSP-AFMIDL 237

Query: 307 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357
             KDL +AL +A  +    P+ AA+ E+Y  A++ G   +D+SA++E ++ 
Sbjct: 238 AHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288

Length = 296

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score =  109 bits (273), Expect = 6e-26
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 3/284 (1%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           RIGF+G+G MG  MA +LLK+   V  ++  K       + G     SP EVA   DV  
Sbjct: 326 RIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLV 385

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP 190
            M+A+   A +V  G  GA S +  G   V  STV       +   ++  G     ++AP
Sbjct: 386 IMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445

Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMG 249
           VSG  K A  G L  +A+G      +   +L  + +  + + G  G G+ +K+V  ++ G
Sbjct: 446 VSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAG 505

Query: 250 SMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQK 309
             +A+ +E +    ++GL+   L +++S    ++ M+  + P M+++ Y     L    K
Sbjct: 506 VHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVK 565

Query: 310 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 353
           DL +      S      ++  A++L+    + G    D +AV++
Sbjct: 566 DLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVK 609

Length = 1378

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 3/284 (1%)

Query: 72  GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
           G +GF+G+  +   +A +LL++G  V  +  +    +    LG     SP E A      
Sbjct: 5   GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAAL 64

Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL-EA 189
             +L+ P+   DV  G  GAA G+  G   +  ST+      KL     +     FL +A
Sbjct: 65  VVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124

Query: 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIM 248
            VS       +G+L+ +A+G         P L  M +  +   G++G G+ +K+V  ++ 
Sbjct: 125 YVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLE 184

Query: 249 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 308
           G  +   +E +    + G+ P ++ +++S  A S+ ++    P +++  Y     L    
Sbjct: 185 GIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244

Query: 309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 352
           ++L + L +A+S+    P+ A A++      S    D+  +++ 
Sbjct: 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLA 288

Length = 1378

>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 22/222 (9%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCD--- 129
           ++G +G+G MG  MA+ L + G +V  ++  +   D    LG   + S +E+ +  +   
Sbjct: 2   KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPR 61

Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK----LINGHIKAT-GA 184
             + M+   E    V          + PG    D+  VDG  S+    L      A  G 
Sbjct: 62  TIWVMVPAGEVTESVI---KDLYPLLSPG----DI-VVDGGNSRYKDDLRRAEELAERGI 113

Query: 185 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM---GKSRFYLGDVGNGAAMK 241
            +++   SG      +G  + +  GDK +Y+ + P+   +   G    + G VG+G  +K
Sbjct: 114 HYVDCGTSGGVWGLRNGYCL-MVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLK 172

Query: 242 LVVNMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 281
           +V N I   MM  ++EG  LL       D   +  +   G++
Sbjct: 173 MVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSV 214

Length = 299

>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 18/219 (8%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDV 130
           IG +G+G MG  + + LL  G DV  ++  ++  + L   GA    S DE+ A   +  +
Sbjct: 3   IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62

Query: 131 TFAML--ADP-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187
            + M+   D  ++ +D        A  +  G   +D    +   S      +   G  FL
Sbjct: 63  VWLMVPAGDITDAVID------DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116

Query: 188 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF---YLGDVGNGAAMKLVV 244
           +   SG    AE G    +  GD+     + P+   +        Y G  G+G  +K+V 
Sbjct: 117 DVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVH 175

Query: 245 NMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 281
           N I   MM   +EG  LL +     D   + EV + G++
Sbjct: 176 NGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSV 214

Length = 300

>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 52.4 bits (127), Expect = 9e-08
 Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 55/239 (23%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCD--- 129
           ++G +G+G MG  MA+ LL+ G +V  ++R     + L   GA    S +E+ A      
Sbjct: 2   QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPR 61

Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD--------GDTSKLING---- 177
           V + M+  P           G            D +T+D        GD   +I+G    
Sbjct: 62  VVWLMV--P----------AGEI---------TD-ATIDELAPLLSPGDI--VIDGGNSY 97

Query: 178 ---------HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 228
                     +   G  F++   SG     E G    +  GDK     + P+   +    
Sbjct: 98  YKDDIRRAELLAEKGIHFVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRA 156

Query: 229 ----FYLGDVGNGAAMKLVVNMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 281
                + G VG G  +K+V N I   MM  ++EG  LL + +  LD   + EV  +G++
Sbjct: 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSV 215

Length = 301

>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 13/217 (5%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCD 129
           ++G +G+G MG  + + L K G D   ++  +     +         +  E++    +  
Sbjct: 2   QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPR 61

Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189
           V + M+  P   +D        A  +  G   +D        S      +K  G   L+ 
Sbjct: 62  VVWVMV--PHGIVDAVL--EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC 117

Query: 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL---LDIMGKSRFYLGDVGNGAAMKLVVNM 246
             SG     E G   F+  GD   +    PL   +    +   Y G  G+G  +K+V N 
Sbjct: 118 GTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNG 176

Query: 247 IMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 281
           I   MMA  +EG  +L + +   D   +  V  +G++
Sbjct: 177 IEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSV 213

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298

>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 132
           IG +G+ +MG+ +A N+   G  V+V+NRT  K D  +   A++      V A     F 
Sbjct: 2   IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL---AEHAKGKKIVGAYSIEEFV 58

Query: 133 AMLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDG------DTSKLING 177
             L  P   M +   K GA            +  G    D+  +DG      DT +    
Sbjct: 59  QSLERPRKIMLMV--KAGAPVDAVINQLLPLLEKG----DI-IIDGGNSHYPDTERR-YK 110

Query: 178 HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKSR-----FYL 231
            +KA G  F+ + VSG ++ A  G  I +  G    +  VAP+   I  K        ++
Sbjct: 111 ELKAKGILFVGSGVSGGEEGARKGPSI-MPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWI 169

Query: 232 GDVGNGAAMKLVVNMIMGSMMATFSEG 258
           G  G G  +K+V N I    M    E 
Sbjct: 170 GPDGAGHYVKMVHNGIEYGDMQLICEA 196

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467

>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 127
           +IGF+G G MG  +   LLK+G     ++ V NR++ K   L +  G        E    
Sbjct: 3   KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE 62

Query: 128 CDVTF 132
            DV F
Sbjct: 63  ADVVF 67

Length = 266

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLI-SLGAKYQP-SPDEVAASCD 129
           +IG +G G MG  +A+ L  AG +V +  +R   K   L   LG K    S +E     D
Sbjct: 1   KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELGVKATAVSNEEAVEEAD 60

Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 165
           V F  +  PE A +V        + +  GK  + ++
Sbjct: 61  VVFLAVK-PEDAPEVL----AELADLLKGKLVISIT 91

Length = 93

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 58  SQATGVSAEADELPGR------IGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPL 110
           +   G        PG       +G +G+G +G  +A+  L+A G  V  ++RT+   +P 
Sbjct: 121 AVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAK-RLQAFGMKVLYYDRTRKP-EPE 178

Query: 111 ISLGAKYQPSPDEVAASCDV 130
             LG +   S DE+ A  DV
Sbjct: 179 EDLGFRV-VSLDELLAQSDV 197

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 69  ELPG-RIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA 126
           EL G  +G +G+G +G  +A+  LKA G  V  ++R         +LGA+Y  S DE+ A
Sbjct: 32  ELSGKTVGIIGLGRIGRAVAR-RLKAFGMKVIAYDRYPK--AEAEALGARYV-SLDELLA 87

Query: 127 SCDV 130
             DV
Sbjct: 88  ESDV 91

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 66  EADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108
            A     RIG  G+ +MG  +A N+ + G  ++V+NRT SK D
Sbjct: 1   MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 43

Length = 493

>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 38/208 (18%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPD--EVAASC 128
           IG +G+ +MG+ +A N+   G  V V+NRT  K D  +   + G    P+    E  AS 
Sbjct: 6   IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVAS- 64

Query: 129 DVTFAMLADPESAM-DVACGK------HGAASGMGPGKGYVDVSTVDG------DTSKLI 175
                 L  P   +  V  G             +  G    D+  +DG      DT +  
Sbjct: 65  ------LEKPRKILLMVKAGTPVDAVIEQLLPLLEKG----DI-IIDGGNSHYKDTIRR- 112

Query: 176 NGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR-----F 229
           N  +   G  F+   VSG ++ A  G  I +  G K  Y  VAP+L  I  K        
Sbjct: 113 NKELSEKGILFVGMGVSGGEEGARHGPSI-MPGGQKEAYELVAPILTKIAAKVDGEPCCT 171

Query: 230 YLGDVGNGAAMKLVVNMIMGSMMATFSE 257
           ++G  G G  +K+V N I    M   +E
Sbjct: 172 WIGPDGAGHFVKMVHNGIEYGDMQLIAE 199

Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
KOG0409	327	consensus Predicted dehydrogenase [General functio	100.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	100.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	100.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	100.0
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	100.0
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	100.0
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	100.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	100.0
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.98
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.97
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.96
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.96
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.96
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.95
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.95
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.95
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.94
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.94
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.94
PLN03139	386	formate dehydrogenase; Provisional	99.94
PRK07574	385	formate dehydrogenase; Provisional	99.94
PRK06487	317	glycerate dehydrogenase; Provisional	99.94
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.94
PRK06932	314	glycerate dehydrogenase; Provisional	99.93
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.93
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.93
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.92
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	99.92
PLN02306	386	hydroxypyruvate reductase	99.92
PRK13243	333	glyoxylate reductase; Reviewed	99.92
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.92
PRK06436	303	glycerate dehydrogenase; Provisional	99.92
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.92
PLN02928	347	oxidoreductase family protein	99.91
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.91
PRK12480	330	D-lactate dehydrogenase; Provisional	99.91
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.91
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.91
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.9
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.9
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.9
PRK08605	332	D-lactate dehydrogenase; Validated	99.89
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.87
PLN02688	266	pyrroline-5-carboxylate reductase	99.87
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.86
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.85
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.85
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.84
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.84
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.83
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.82
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.82
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.82
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.81
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	99.81
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.8
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
PRK08507	275	prephenate dehydrogenase; Validated	99.8
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
PRK08655	437	prephenate dehydrogenase; Provisional	99.79
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.79
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.79
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.78
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.78
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.78
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.77
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.77
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.76
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.76
PRK07417	279	arogenate dehydrogenase; Reviewed	99.76
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.76
PLN02256	304	arogenate dehydrogenase	99.75
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.75
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.75
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.74
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.73
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.73
PRK06545	359	prephenate dehydrogenase; Validated	99.72
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.71
PRK07680	273	late competence protein ComER; Validated	99.71
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.7
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.7
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.7
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.7
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.68
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.68
PLN02712	667	arogenate dehydrogenase	99.66
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.65
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.63
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.62
PLN02712	667	arogenate dehydrogenase	99.62
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.6
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.59
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.59
PRK08818	370	prephenate dehydrogenase; Provisional	99.58
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.58
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.55
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.51
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.49
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.49
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.48
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.47
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.47
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.47
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.47
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.46
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.43
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.43
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.42
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.41
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.41
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.38
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.38
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.35
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.34
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.25
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.2
PRK06444	197	prephenate dehydrogenase; Provisional	99.18
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.17
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	99.17
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.16
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.14
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.14
PLN02494	477	adenosylhomocysteinase	99.12
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.09
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.05
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.98
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.97
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.94
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.89
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.88
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.88
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.88
KOG0067	435	consensus Transcription factor CtBP [Transcription	98.86
PRK05225	487	ketol-acid reductoisomerase; Validated	98.85
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.75
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.67
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.67
PRK06141	314	ornithine cyclodeaminase; Validated	98.66
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.64
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.63
COG5495	289	Uncharacterized conserved protein [Function unknow	98.63
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.61
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.55
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.53
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.51
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.5
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.49
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.47
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.43
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.39
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.38
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	98.37
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.36
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.36
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.36
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.35
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.32
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	98.31
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.31
PLN00203	519	glutamyl-tRNA reductase	98.25
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.25
PRK07340	304	ornithine cyclodeaminase; Validated	98.24
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.21
PRK08618	325	ornithine cyclodeaminase; Validated	98.18
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.17
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.17
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.16
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.15
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.13
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.13
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.13
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	98.13
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.13
PRK06823	315	ornithine cyclodeaminase; Validated	98.12
PRK06407	301	ornithine cyclodeaminase; Provisional	98.12
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.11
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.1
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.08
PTZ00117	319	malate dehydrogenase; Provisional	98.06
PRK06223	307	malate dehydrogenase; Reviewed	98.04
PRK06046	326	alanine dehydrogenase; Validated	98.04
PRK11579	346	putative oxidoreductase; Provisional	98.04
PRK08291	330	ectoine utilization protein EutC; Validated	98.04
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.03
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.01
PF00984	96	UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas	98.01
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.01
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	98.0
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.99
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.99
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.98
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.98
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.95
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.93
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.93
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.93
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.92
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.92
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.92
PRK07589	346	ornithine cyclodeaminase; Validated	97.91
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.89
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.88
PRK04148	134	hypothetical protein; Provisional	97.87
PRK06199	379	ornithine cyclodeaminase; Validated	97.87
PRK10206	344	putative oxidoreductase; Provisional	97.87
PRK06349	426	homoserine dehydrogenase; Provisional	97.85
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.84
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.84
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.83
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.83
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.83
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.83
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.82
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.81
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.81
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.78
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.76
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.75
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.74
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.74
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.72
COG2910	211	Putative NADH-flavin reductase [General function p	97.72
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.72
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.71
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.7
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.69
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.68
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.68
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.65
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.65
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.62
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.62
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.61
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	97.58
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.55
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.54
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.53
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.53
PRK09496	453	trkA potassium transporter peripheral membrane com	97.51
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.51
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.5
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.5
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.5
PRK10669	558	putative cation:proton antiport protein; Provision	97.5
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.49
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.49
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.48
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.48
PRK14982	340	acyl-ACP reductase; Provisional	97.48
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.48
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.48
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.47
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.47
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.47
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.44
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.44
PRK09414	445	glutamate dehydrogenase; Provisional	97.42
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.42
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.4
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.38
PLN02477	410	glutamate dehydrogenase	97.37
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.37
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.37
PF10728	132	DUF2520: Domain of unknown function (DUF2520); Int	97.37
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.36
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.36
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.34
PLN02602	350	lactate dehydrogenase	97.34
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.33
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.33
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.32
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.31
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.31
PRK06270	341	homoserine dehydrogenase; Provisional	97.3
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.27
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.26
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.26
PRK06392	326	homoserine dehydrogenase; Provisional	97.25
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.25
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.25
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.24
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.22
PRK05086	312	malate dehydrogenase; Provisional	97.21
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.21
PRK08374	336	homoserine dehydrogenase; Provisional	97.21
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.21
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.2
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.19
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.19
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.17
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.14
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.14
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.14
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.11
PRK05442	326	malate dehydrogenase; Provisional	97.1
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.04
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.04
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.03
PLN02383	344	aspartate semialdehyde dehydrogenase	97.03
CHL00194	317	ycf39 Ycf39; Provisional	97.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.98
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.97
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.95
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PTZ00325	321	malate dehydrogenase; Provisional	96.94
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.94
PLN00106	323	malate dehydrogenase	96.93
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.92
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.91
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.86
PRK14031	444	glutamate dehydrogenase; Provisional	96.86
PF08546	125	ApbA_C: Ketopantoate reductase PanE/ApbA C termina	96.86
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	96.85
PF00393	291	6PGD: 6-phosphogluconate dehydrogenase, C-terminal	96.84
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.84
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.84
PRK09496	453	trkA potassium transporter peripheral membrane com	96.82
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.82
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.82
COG2344	211	AT-rich DNA-binding protein [General function pred	96.81
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.8
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.8
PRK15076	431	alpha-galactosidase; Provisional	96.8
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.77
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.76
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.72
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.71
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.71
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.68
PRK14030	445	glutamate dehydrogenase; Provisional	96.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.66
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.64
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.64
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.64
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.63
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.62
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.61
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.59
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.57
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.56
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.53
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.53
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.51
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.48
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.48
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.47
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.45
PRK08328	231	hypothetical protein; Provisional	96.45
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.45
COG5322	351	Predicted dehydrogenase [General function predicti	96.42
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.41
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.38
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.36
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.36
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.35
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.33
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.33
PRK07478	254	short chain dehydrogenase; Provisional	96.31
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.3
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.3
PRK06139	330	short chain dehydrogenase; Provisional	96.3
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
PRK08265	261	short chain dehydrogenase; Provisional	96.27
PRK12939	250	short chain dehydrogenase; Provisional	96.27
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.26
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	96.25
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.24
PRK05866	293	short chain dehydrogenase; Provisional	96.23
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	96.21
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.15
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.14
PRK08223	287	hypothetical protein; Validated	96.14
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.13
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
PRK07774	250	short chain dehydrogenase; Provisional	96.13
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.12
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.11
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.08
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.06
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.04
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.03
PRK12828	239	short chain dehydrogenase; Provisional	96.02
PRK07109	334	short chain dehydrogenase; Provisional	96.02
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.02
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.0
PLN03209	576	translocon at the inner envelope of chloroplast su	96.0
PRK05876	275	short chain dehydrogenase; Provisional	95.99
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	95.99
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.98
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.97
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.97
PRK07890	258	short chain dehydrogenase; Provisional	95.95
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.95
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.95
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.92
PRK05867	253	short chain dehydrogenase; Provisional	95.91
PRK06172	253	short chain dehydrogenase; Provisional	95.9
PRK07326	237	short chain dehydrogenase; Provisional	95.9
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.89
PRK07825	273	short chain dehydrogenase; Provisional	95.88
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.88
PLN02427	386	UDP-apiose/xylose synthase	95.87
PRK07454	241	short chain dehydrogenase; Provisional	95.86
PRK08589	272	short chain dehydrogenase; Validated	95.86
PRK08862	227	short chain dehydrogenase; Provisional	95.85
PRK06182	273	short chain dehydrogenase; Validated	95.83
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.83
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.83
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	95.83
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.82
PRK07063	260	short chain dehydrogenase; Provisional	95.81
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.8
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.8
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.8
PRK07576	264	short chain dehydrogenase; Provisional	95.79
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.79
PRK07067	257	sorbitol dehydrogenase; Provisional	95.78
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.77
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	95.77
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.76
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.76
PRK10538	248	malonic semialdehyde reductase; Provisional	95.76
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	95.75
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.74
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.74
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.73
PRK06398	258	aldose dehydrogenase; Validated	95.73
PRK06194	287	hypothetical protein; Provisional	95.72
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.72
PRK06057	255	short chain dehydrogenase; Provisional	95.71
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	95.71
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.71
PRK05872	296	short chain dehydrogenase; Provisional	95.69
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.69
PRK06813	346	homoserine dehydrogenase; Validated	95.67
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.67
PRK05854	313	short chain dehydrogenase; Provisional	95.67
PRK07814	263	short chain dehydrogenase; Provisional	95.66
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	95.66
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.65
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.61
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.61
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.6
PRK12829	264	short chain dehydrogenase; Provisional	95.6
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.6
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.59
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.59
PRK07062	265	short chain dehydrogenase; Provisional	95.57
PRK05717	255	oxidoreductase; Validated	95.56
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.53
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.53
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.52
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.51
PRK09186	256	flagellin modification protein A; Provisional	95.51
PLN02214	342	cinnamoyl-CoA reductase	95.5
PLN02780	320	ketoreductase/ oxidoreductase	95.5
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.47
PRK09242	257	tropinone reductase; Provisional	95.46
PRK07060	245	short chain dehydrogenase; Provisional	95.46
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.45
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.45
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	95.44
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.44
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.44
PRK08628	258	short chain dehydrogenase; Provisional	95.43
PRK06500	249	short chain dehydrogenase; Provisional	95.43

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=4.1e-51  Score=361.52  Aligned_cols=285  Identities=40%  Similarity=0.647  Sum_probs=276.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      +||+|||+|.||..+|.+|.+.||+|++|||++++ .+.+.+.|.....++.|+++++|+||+++|.+++++.++++...
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            47999999999999999999999999999999988 56666779999999999999999999999999999999988788


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +.+.+++|+++||+|+.+|...+.+.+.++.+|+.|+|+|++|++.....++++++++|+++.+++++++|+.+|.++++
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~  160 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH  160 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHH
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD  310 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  310 (359)
                      +|+.|.++..|+++|.+...++.++.|++.++++.|++++.+.++++.+.+.||.++++.++|.+++|.|+|+++.+.||
T Consensus       161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD  240 (286)
T COG2084         161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD  240 (286)
T ss_pred             ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      ++++.+.+++.|+++|+...+.++|..+.+.|+|++|++++++.|+
T Consensus       241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~  286 (286)
T COG2084         241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE  286 (286)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence            9999999999999999999999999999999999999999999874

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=9.3e-48  Score=332.67  Aligned_cols=290  Identities=43%  Similarity=0.703  Sum_probs=282.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      .+.++||+||+|+||..++..|.+.||.|++|||+.++.+.+.+.|.....++.|+.+.||+||.++|.+.+.+++++++
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213          149 HGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       149 ~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~  227 (359)
                      ..++..++++... ||.|+..|....++.+++..++.+|+++|++|+...++.+.++++++||++.+++..++|+.+|++
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~  192 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN  192 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce
Confidence            8899989998877 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHH
Q 018213          228 RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ  307 (359)
Q Consensus       228 ~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      ++++|..|.+...|+++|.+.+..+..++|++.++.+.|++...+.++++.+.+.|+++.++.|.|.+++|.|+|.++++
T Consensus       193 ~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m  272 (327)
T KOG0409|consen  193 VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLM  272 (327)
T ss_pred             EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          308 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       308 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      .||++.+.+.++..+.|+|+...+.|+|+...+.|+|+.|++++++.++.+
T Consensus       273 ~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~  323 (327)
T KOG0409|consen  273 VKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRL  323 (327)
T ss_pred             HHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888764

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=4.9e-45  Score=331.39  Aligned_cols=286  Identities=32%  Similarity=0.539  Sum_probs=268.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|+..+.+..++++++|+|++|+|.+++++.++++...+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            4799999999999999999999999999999874 466667788888899999999999999999988999998654456


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.+++|+++||+|+..|...+++.+.+.++|+.|+++|++|++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~  159 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV  159 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence            77788999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      |+.|.+...|+++|.+....+.++.|++.++++.|++++.+.+++..+.+.|++++.+.+++..++|.++|+++.+.||+
T Consensus       160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl  239 (292)
T PRK15059        160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL  239 (292)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      +++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++.+++.
T Consensus       240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~  286 (292)
T PRK15059        240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM  286 (292)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998763

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-44  Score=327.50  Aligned_cols=286  Identities=29%  Similarity=0.477  Sum_probs=267.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      ++|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.++.++++++|+|++|+|.+..++.++++...+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            47999999999999999999999999999999998888888888888899999999999999999888899988544556


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++.++||+|++.|...+++.+.+.++|+.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~  161 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA  161 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence            77788999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-ccccCCCCCCcchhHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD  310 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  310 (359)
                      |+.|.+...|+++|.+...+..+++|++.++++.|++++.+.+++..+...++.+....+ .+..++|.++|+++.+.||
T Consensus       162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD  241 (296)
T PRK15461        162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD  241 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence            999999999999999999999999999999999999999999999988777777766654 7888999999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+++
T Consensus       242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  288 (296)
T PRK15461        242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV  288 (296)
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998865

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=100.00  E-value=1.4e-42  Score=317.09  Aligned_cols=285  Identities=32%  Similarity=0.570  Sum_probs=267.2

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccccc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA  152 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~  152 (359)
                      +|||||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|.....+.++++++||+|++|+|.+.+++.++++...+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            49999999999999999999999999999999888888888887788999999999999999998888988875434466


Q ss_pred             ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeC
Q 018213          153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG  232 (359)
Q Consensus       153 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g  232 (359)
                      ..+++++++||+|+..+.+.+++.+.+++++++|+++|+++++.....+.+.++++|+++.+++++++++.+|.++++++
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g  160 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG  160 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence            77889999999999999999999999999999999999999988777788889999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHH
Q 018213          233 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR  312 (359)
Q Consensus       233 ~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  312 (359)
                      +.+.+...|+++|.+....+.+++|++.++++.|++++++.+++..+.+.+++++.+.+.+..++|.++|+++.+.||+.
T Consensus       161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~  240 (291)
T TIGR01505       161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN  240 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998889999998889999999999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ++.+++++.|+++|+.+++.++++.+.+.|+|++|++++++++++
T Consensus       241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  285 (291)
T TIGR01505       241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL  285 (291)
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=2e-42  Score=316.90  Aligned_cols=286  Identities=32%  Similarity=0.554  Sum_probs=268.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+.+++++++++|+|++|+|.+.+++.++++.+++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            68999999999999999999999999999999988887877788888899999999999999999988899887544456


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++++++|+|+..|...+++.+.+.+++++|+++|++++++....+.+.++++|+++.++++.++++.+|.+++++
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~  162 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  162 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence            77889999999999999999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      |+.+.++..|+++|.+....+++++|++.++++.|++++++.+.+..+.+.+++++.+.+.+.+++|.++|+++...||+
T Consensus       163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl  242 (296)
T PRK11559        163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  242 (296)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888999999888889889999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +++.+++++.|+++|+.+++.++++.+.+.|+|++|++++++++++
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  288 (296)
T PRK11559        243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK  288 (296)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999865

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=100.00  E-value=4.1e-42  Score=313.01  Aligned_cols=280  Identities=34%  Similarity=0.514  Sum_probs=261.5

Q ss_pred             EEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccC
Q 018213           76 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM  155 (359)
Q Consensus        76 iiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l  155 (359)
                      |||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+....++.++++++|+|++|+|.+.+++.++++.+.+.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999999988888888888888999999999999999998788898886556677788


Q ss_pred             CCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccC
Q 018213          156 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG  235 (359)
Q Consensus       156 ~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~  235 (359)
                      ++++++||+|+..|...+.+.+.+.++|+.|+++|++|++.....+.+.++++|+++.+++++++|+.+|.+++++|+.+
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g  160 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG  160 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-------ccccCCCCCCcchhHHH
Q 018213          236 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFPLKHQQ  308 (359)
Q Consensus       236 ~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~  308 (359)
                      .+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.++.+..+.+       .+..++|.++|++..+.
T Consensus       161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  240 (288)
T TIGR01692       161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML  240 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence            99999999999999999999999999999999999999999998888887775544       23568999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018213          309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL  355 (359)
Q Consensus       309 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~  355 (359)
                      ||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|++|++++++.+
T Consensus       241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~  287 (288)
T TIGR01692       241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL  287 (288)
T ss_pred             hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence            99999999999999999999999999999999999999999999876

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=1.6e-40  Score=351.17  Aligned_cols=287  Identities=21%  Similarity=0.359  Sum_probs=275.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      ..+|||||+|.||..||++|.+.|++|.+|||++++.+.+.+.|+..++++.|++++||+||+|+|.+.+++.++++...
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g   83 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG   83 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence            36799999999999999999999999999999999999999889999999999999999999999999999999977677


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcC--CeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  228 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~  228 (359)
                      +++.+++|.++||+|+..|....++.+.+.++|  +.|+++|++|++..+..+.+.++++|+++.+++++++|+.+|.++
T Consensus        84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i  163 (1378)
T PLN02858         84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL  163 (1378)
T ss_pred             HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence            888899999999999999999999999999998  999999999999999999999999999999999999999999998


Q ss_pred             EEe-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHH
Q 018213          229 FYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ  307 (359)
Q Consensus       229 ~~~-g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      +++ |+.|.+...|+++|++....+.+++|++.++++.|++++.+++++..+++.||++..+.+.+..++|.++|+++.+
T Consensus       164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~  243 (1378)
T PLN02858        164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL  243 (1378)
T ss_pred             EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence            864 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          308 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       308 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      .||++++.+++++.|+++|+.+.+.++|..+.+.|+|++|++++++.+++
T Consensus       244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~  293 (1378)
T PLN02858        244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK  293 (1378)
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999875

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=3.6e-39  Score=340.93  Aligned_cols=288  Identities=26%  Similarity=0.394  Sum_probs=273.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      ..++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|.....++.+++++||+|++|+|.+.+++.+++++.
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            34789999999999999999999999999999999888888888887788999999999999999999999999987666


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~  227 (359)
                      .+++.+++|.++||+|+..|...+++.+.+.+  +|+.|+++|++|++..+..+.+.++++|+++.+++++++|+.+|.+
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~  482 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK  482 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence            67788899999999999999999999999998  8999999999999999999999999999999999999999999998


Q ss_pred             eEEe-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhH
Q 018213          228 RFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH  306 (359)
Q Consensus       228 ~~~~-g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      ++++ ++.|.+..+|+++|.+....+++++|++.++++.|++++.+.+++..+.+.||++..+.+.|..++|.++|+++.
T Consensus       483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l  562 (1378)
T PLN02858        483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDI  562 (1378)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHH
Confidence            8874 679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          307 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       307 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +.||++++.+++++.|+|+|+.+.+.++|..+.+.|+|++|++++++.+++
T Consensus       563 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~  613 (1378)
T PLN02858        563 FVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET  613 (1378)
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=2.9e-38  Score=288.90  Aligned_cols=279  Identities=21%  Similarity=0.300  Sum_probs=254.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+|||||+|+||..+|++|.+.|++|++|||++++.+.+.+.|...+.++++++++   +|+|++|+|.+.+++.++   
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---   77 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---   77 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence            47999999999999999999999999999999988888887888888899999876   699999999877999998   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  226 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~--  226 (359)
                      .++.+.+++|.++||+|++.|.+..++.+.+.++++.|+++|++|++.....+. .++++|+++.+++++++|+.+|.  
T Consensus        78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (299)
T PRK12490         78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG  156 (299)
T ss_pred             HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence            677888899999999999999999999999999999999999999998888887 68899999999999999999997  


Q ss_pred             -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-cccchhhhhcccccccCCCCCCc
Q 018213          227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAF  302 (359)
Q Consensus       227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~  302 (359)
                       +++++|+.|.+...|+++|.+....+.+++|++.++++.|  ++++.+.++++.+ .+.|++++...+.+.++++  .+
T Consensus       157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~  234 (299)
T PRK12490        157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA  234 (299)
T ss_pred             CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence             7899999999999999999999999999999999999999  9999999999964 4888999888887765443  25


Q ss_pred             chhHHHHHH---HHHHHHHHhcCCCchHHHHHH-HHHHHHHHCCCCCccHHHHHHHHH
Q 018213          303 PLKHQQKDL---RLALGLAESVSQSTPIAAAAN-ELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       303 ~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      .++.+.||.   +++++.+++.|+|+|++.++. .++....+.|.|..|.+++.+++-
T Consensus       235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~  292 (299)
T PRK12490        235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG  292 (299)
T ss_pred             hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence            688999998   899999999999999999995 888888899989999999988763

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=3.4e-37  Score=294.44  Aligned_cols=268  Identities=21%  Similarity=0.279  Sum_probs=242.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCc---cCCCHHHHhhc---CCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivi~~~p~~  138 (359)
                      ...++|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.    |..   .+.+++|+++.   +|+|++++|.+
T Consensus         4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~   83 (493)
T PLN02350          4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG   83 (493)
T ss_pred             CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence            344679999999999999999999999999999999988887653    543   57789999876   99999999999


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHH
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVA  218 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~  218 (359)
                      +.++.++   ..+++.+++|.++||+|+..+.+...+.+.++++|++|+++|++|++..+..++ .+++||+++++++++
T Consensus        84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~  159 (493)
T PLN02350         84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE  159 (493)
T ss_pred             HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence            9999999   778889999999999999999999999999999999999999999999999998 789999999999999


Q ss_pred             HHHHHhCC------CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhhccccchhhhh
Q 018213          219 PLLDIMGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEV---VSQGAISAPMYSL  288 (359)
Q Consensus       219 ~ll~~lg~------~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~  288 (359)
                      ++|+.++.      +++++|+.|.++.+|+++|.+.+..+.+++|++.++++ .|++++++.++   +..+.+.|++++.
T Consensus       160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei  239 (493)
T PLN02350        160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI  239 (493)
T ss_pred             HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence            99999995      48999999999999999999999999999999999999 59999999998   4577888999998


Q ss_pred             cccccccCC-CCCCcchhHHHHHHH------HHHHHHHhcCCCchH-HHHHHHHHHHHHH
Q 018213          289 KGPSMIESL-YPTAFPLKHQQKDLR------LALGLAESVSQSTPI-AAAANELYKVAKS  340 (359)
Q Consensus       289 ~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~  340 (359)
                      +.+.+..++ +.++|.++.+.||++      +..+.+.+.|+|+|+ ..++.+.+.....
T Consensus       240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k  299 (493)
T PLN02350        240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK  299 (493)
T ss_pred             HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence            888777664 777899999999999      999999999999999 7777766665543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=9.9e-36  Score=272.63  Aligned_cols=278  Identities=23%  Similarity=0.331  Sum_probs=247.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+++++++++.   +|+|++++|....++.++   
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---   77 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---   77 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence            57999999999999999999999999999999998888888888888899998876   699999999877889888   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  226 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~--  226 (359)
                      ..+.+.++++.++||+|++.+....++.+.++++|+.|+++|++|++.....+. .++++|+++.+++++++|+.++.  
T Consensus        78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (301)
T PRK09599         78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA  156 (301)
T ss_pred             HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence            677788899999999999999999999999999999999999999998888785 78899999999999999999998  


Q ss_pred             --CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCC
Q 018213          227 --SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTA  301 (359)
Q Consensus       227 --~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~  301 (359)
                        +++++|+.|++..+|+++|.+.+..+.++.|++.++++  .|++++.+.++++.++ ..|++++...+.+..+   +.
T Consensus       157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~  233 (301)
T PRK09599        157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PK  233 (301)
T ss_pred             cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CC
Confidence              89999999999999999999999999999999999999  9999999999999875 6888888877776443   22


Q ss_pred             cc-hhHHHHH---HHHHHHHHHhcCCCchHHHHH-HHHHHHHHHCCCCCccHHHHHHHHH
Q 018213          302 FP-LKHQQKD---LRLALGLAESVSQSTPIAAAA-NELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       302 ~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~-~~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      +. +....||   .+++++.+.+.|+|+|.+.+. ...+....+.|.++.|.+++.+++-
T Consensus       234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg  293 (301)
T PRK09599        234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG  293 (301)
T ss_pred             HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence            22 3344555   588999999999999999994 4568888888999999999988763

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=2.9e-32  Score=249.15  Aligned_cols=278  Identities=22%  Similarity=0.273  Sum_probs=236.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh---hcCCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.+.....+++++.   ..+|+|++++|.. .++.++   
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---   76 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---   76 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence            579999999999999999999999999999999988888887777677777765   4589999999966 999998   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  226 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~--  226 (359)
                      +++.+.+++|.++||++++.+.+...+.+.+.+.|++|+++|++|++.....+ ..++++|+++.++.++++|+.++.  
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~  155 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE  155 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence            78888899999999999999999999999999999999999999999888888 578899999999999999999986  


Q ss_pred             -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCCc
Q 018213          227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF  302 (359)
Q Consensus       227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~  302 (359)
                       .++++|+.|.+...|++.|.+....+.+++|++.++++.  |++++++.++++.++ +.|++++...+.+.+++..+.+
T Consensus       156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~  235 (298)
T TIGR00872       156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF  235 (298)
T ss_pred             CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence             588999999999999999999999999999999999998  579999999999886 5899999887777766654544


Q ss_pred             chh-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          303 PLK-HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       303 ~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ... ...+|.++++..+.+.|+|+|.+.+.  ++.+..... .+.-...++...|+
T Consensus       236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~  288 (298)
T TIGR00872       236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRK  288 (298)
T ss_pred             HHHHHhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHH
Confidence            433 35677789999999999999999884  444444432 22334555555554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-31  Score=254.64  Aligned_cols=256  Identities=20%  Similarity=0.248  Sum_probs=221.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----C--CccCCCHHHHhh---cCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivi~~~p~~~~~~  142 (359)
                      ++|||||+|.||.++|++|.+.|++|.+|||++++.+.+.+.    |  +..+.+++|++.   ++|+|++++|.+..++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            579999999999999999999999999999999988877653    4  346789999986   4899999999899999


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD  222 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~  222 (359)
                      .++   +++.+.+++|.+|||++++.+.++....+.+.++|++|+++|++|++..+..++ .+++||+++++++++++|+
T Consensus        82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~  157 (470)
T PTZ00142         82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE  157 (470)
T ss_pred             HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence            999   788899999999999999999999999999999999999999999999999998 6899999999999999999


Q ss_pred             HhCCC------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccccchhhhhcccc
Q 018213          223 IMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVVS---QGAISAPMYSLKGPS  292 (359)
Q Consensus       223 ~lg~~------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~  292 (359)
                      .++.+      +.++|+.|.++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++.   .+...|++++.....
T Consensus       158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~  237 (470)
T PTZ00142        158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI  237 (470)
T ss_pred             HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            99987      789999999999999999999999999999999998 79999999998884   677889988877665


Q ss_pred             cccCCCCC-CcchhHH-----HH-HHHHHHHHHHhcCCCchHHHHH
Q 018213          293 MIESLYPT-AFPLKHQ-----QK-DLRLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       293 ~~~~~~~~-~~~~~~~-----~k-d~~~~~~~a~~~g~~~p~~~~~  331 (359)
                      +...+-.. +.-++..     .| .-.+.+..+-++|+|.|++...
T Consensus       238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a  283 (470)
T PTZ00142        238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS  283 (470)
T ss_pred             hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence            55443221 1222221     11 1257788899999999988776

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.98  E-value=1.4e-30  Score=249.06  Aligned_cols=254  Identities=19%  Similarity=0.241  Sum_probs=218.9

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhh---cCCEEEEeeCChhHHHHHh
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivi~~~p~~~~~~~~~  145 (359)
                      |||||+|.||.++|++|.+.|++|.+|||++++.+.+.+.     ++..+.++++++.   .+|+|++++|.+..++.++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi   81 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI   81 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence            8999999999999999999999999999999988887765     2456678888774   5899999999888999999


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG  225 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg  225 (359)
                         +++.+.+++|.+|||++++.+.++....+.+.++|++|+++|++|++..+..++ .++++|+++++++++++|+.++
T Consensus        82 ---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia  157 (467)
T TIGR00873        82 ---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIA  157 (467)
T ss_pred             ---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHh
Confidence               788888999999999999999999899999999999999999999999999898 6789999999999999999998


Q ss_pred             CC------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhhccccccc
Q 018213          226 KS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIE  295 (359)
Q Consensus       226 ~~------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~  295 (359)
                      .+      +.++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++   +.+.+.|++++...+.+.+
T Consensus       158 ~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~  237 (467)
T TIGR00873       158 AKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKK  237 (467)
T ss_pred             hhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence            86      479999999999999999999999999999999985 7999999999999   5677889999988777766


Q ss_pred             CCCCCCcchhHH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018213          296 SLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       296 ~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~  331 (359)
                      ++-....-++..      -..-.+.+..+-++|+|.|++...
T Consensus       238 ~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a  279 (467)
T TIGR00873       238 KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES  279 (467)
T ss_pred             cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence            443211112221      111257788899999999988765

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.97  E-value=3e-29  Score=238.89  Aligned_cols=246  Identities=21%  Similarity=0.250  Sum_probs=218.4

Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhcccccccc
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS  153 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~~~~~~  153 (359)
                      ||..+|++|.+.|++|.+|||++++.+.+.+.     |+..+.+++++++.   +|+|++++|.+..++.++   .++++
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~   77 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP   77 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence            89999999999999999999999999888773     47788899999875   899999999999999999   78889


Q ss_pred             cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe-----
Q 018213          154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-----  228 (359)
Q Consensus       154 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~-----  228 (359)
                      .+.+|.++||+++..+.++.+..+.++++|++|+++|++|++..+..|+ .+++||+++++++++++|+.++.++     
T Consensus        78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~  156 (459)
T PRK09287         78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP  156 (459)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence            9999999999999999999999999999999999999999999999998 7889999999999999999999876     


Q ss_pred             --EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhhcccccccCCCCCCc
Q 018213          229 --FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAF  302 (359)
Q Consensus       229 --~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~  302 (359)
                        .++|+.|.++.+|+++|.+.+..+++++|++.+++ +.|++++++.+++   +.+.+.|++++.+.+.+.++++..+.
T Consensus       157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~  236 (459)
T PRK09287        157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK  236 (459)
T ss_pred             ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence              89999999999999999999999999999999999 5899999999998   46778899999988888887874332


Q ss_pred             -chhHH-----HHH-HHHHHHHHHhcCCCchHHHHH
Q 018213          303 -PLKHQ-----QKD-LRLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       303 -~~~~~-----~kd-~~~~~~~a~~~g~~~p~~~~~  331 (359)
                       -++..     .|. -.+.+..+-++|+|.|++...
T Consensus       237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A  272 (459)
T PRK09287        237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA  272 (459)
T ss_pred             cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence             22222     111 257788888999999987664

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.96  E-value=3.4e-28  Score=232.14  Aligned_cols=255  Identities=18%  Similarity=0.169  Sum_probs=206.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  131 (359)
                      |+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+                   .| +....+..++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            57999999999999999999999999999999887766543                   12 45566788888999999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCe-eecCCCCCCCcccc
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-FLEAPVSGSKKPAE  199 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~-~~~~~~~~~~~~~~  199 (359)
                      |+|+|.+.         .+..++   +.+.+.+++++++|++|+..|...+.+...+.+.  |.. +.+.++.+.+....
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence            99999764         356665   6677778999999999999999888887554333  322 33444444443333


Q ss_pred             CCce--------EEEecCCHHHHHHHHHHHHHhC-CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213          200 DGQL--------IFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  270 (359)
Q Consensus       200 ~~~~--------~~~~~g~~~~~~~v~~ll~~lg-~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  270 (359)
                      .+..        .++++++++..++++++++.++ ..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|++
T Consensus       158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~  237 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY  237 (411)
T ss_pred             CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            3333        6778899999999999999998 578889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhhcccccccCCCCCCc--chhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213          271 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  340 (359)
Q Consensus       271 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  340 (359)
                      ++.+++...           +++..+.+.|++  ....+.||+.++...+++.|+++|+++++.++.+...+
T Consensus       238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~  298 (411)
T TIGR03026       238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPD  298 (411)
T ss_pred             HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHH
Confidence            999998753           345556677765  45669999999999999999999999999887766543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.96  E-value=1e-29  Score=231.70  Aligned_cols=179  Identities=17%  Similarity=0.179  Sum_probs=155.5

Q ss_pred             CeeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCC-CCccccccccccccCCcccccCCCCeEEEEcC
Q 018213            1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEADELPGRIGFLGM   79 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~   79 (359)
                      |++..+|+|++.  +++|++++++|++.|++..+.+..|.|.|.... ...+.             ..+++++|+||||+
T Consensus        90 I~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~-------------~~~l~gktvGIiG~  154 (324)
T COG1052          90 ITVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLL-------------GFDLRGKTLGIIGL  154 (324)
T ss_pred             cEEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCccccc-------------ccCCCCCEEEEECC
Confidence            467788999999  999999999999999999999999999998653 11111             11288999999999


Q ss_pred             ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCC
Q 018213           80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK  159 (359)
Q Consensus        80 G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~  159 (359)
                      |+||+++|++++.||++|.+|+|++. .+...+.+..+.+ ++|++++||+|++++|.+++|++++  |++.++.||+|+
T Consensus       155 GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga  230 (324)
T COG1052         155 GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGA  230 (324)
T ss_pred             CHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCe
Confidence            99999999999999999999999875 2333333466665 9999999999999999999999999  899999999999


Q ss_pred             EEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       160 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ++||++||..++++++.++|+++.+...+.+++..++..
T Consensus       231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~  269 (324)
T COG1052         231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPAL  269 (324)
T ss_pred             EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCC
Confidence            999999999999999999999999988888888877653

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.8e-27  Score=199.48  Aligned_cols=264  Identities=23%  Similarity=0.304  Sum_probs=217.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh---cCCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+||.||+|+||..+.++|...||+|++||+++..++.+...|++..+++++++.   ...+|.+.+|..+-|..++   
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---   77 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---   77 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence            5799999999999999999999999999999999999999999988889888765   4799999999988999999   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  226 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~--  226 (359)
                      +++.+.|.+|.+|||-++....+.....+.+++++++|+++..+|+......+.. ++++|++++++++.++|+.+..  
T Consensus        78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~lA~ge  156 (300)
T COG1023          78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKALAPGE  156 (300)
T ss_pred             HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHhhCcCc
Confidence            8999999999999999999999999999999999999999999999988888776 6789999999999999999865  


Q ss_pred             -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-ccchhhhhcccccccC-CCCCC
Q 018213          227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-LYPTA  301 (359)
Q Consensus       227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~~  301 (359)
                       ...++|+.|+++.+|++.|.+.+.++++++|.+.++++..  +|.+.+.++.+.++ ..||+++.......+. +...-
T Consensus       157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~  236 (300)
T COG1023         157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI  236 (300)
T ss_pred             CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHh
Confidence             4578999999999999999999999999999999999865  56888889998875 5688777553332221 11000


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ...-.-..+-.+-++.+-+.|+|.|++...  ++.+..++
T Consensus       237 ~g~v~dSGEGrWTv~~aldlgvpaPVia~a--l~~Rf~S~  274 (300)
T COG1023         237 SGRVSDSGEGRWTVEEALDLGVPAPVIALA--LMMRFRSR  274 (300)
T ss_pred             cCeeccCCCceeehHHHHhcCCCchHHHHH--HHHHHhcc
Confidence            000000001234566778899999998766  44444443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.95  E-value=2e-28  Score=204.15  Aligned_cols=162  Identities=38%  Similarity=0.664  Sum_probs=143.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      +++|||||+|+||..+|++|.+.|++|++|||++++.+.+.+.|+..++++.|+++++|+|++|+|.+.+++.++++.. 
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-   79 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-   79 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999995433 


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +++.+++|+++||+|+..|....++.+.+.++|+.|+++|++|+++....+.+.++++|+++.+++++++|+.++.++++
T Consensus        80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~  159 (163)
T PF03446_consen   80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH  159 (163)
T ss_dssp             HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999884


Q ss_pred             -eCc
Q 018213          231 -LGD  233 (359)
Q Consensus       231 -~g~  233 (359)
                       +|+
T Consensus       160 ~~G~  163 (163)
T PF03446_consen  160 YVGP  163 (163)
T ss_dssp             E-ES
T ss_pred             eeCc
Confidence             464

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.95  E-value=9.6e-28  Score=222.79  Aligned_cols=272  Identities=16%  Similarity=0.172  Sum_probs=215.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------C------CccCCCHHHHhhcCCEEEEeeC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +|+|+|||+|.||..+|..|...|++|++|+|++++.+.+...        |      +..+.+++++++++|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4789999999999999999999999999999988776666543        2      3356688888899999999997


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCC-ChHH--HHHHHHHHHh---cCCeeecCCCCCCCccccCCceEEEecCC
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD  210 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~--~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  210 (359)
                       +.+++.++       +.++++.++|++++| .+..  ...+.+.+.+   .++.++..|....+.....+...++++++
T Consensus        84 -~~~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~  155 (328)
T PRK14618         84 -SKALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE  155 (328)
T ss_pred             -hHHHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence             44666665       446788899999886 4433  4566666655   56777777766555444446677788899


Q ss_pred             HHHHHHHHHHHHHhCCCeEEeCc-----------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213          211 KSLYNTVAPLLDIMGKSRFYLGD-----------------VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  273 (359)
Q Consensus       211 ~~~~~~v~~ll~~lg~~~~~~g~-----------------~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~  273 (359)
                      ++.+++++++|+..+.+++...+                 .|.+...|+..|.....+..++.|+..++++.|+++++++
T Consensus       156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~  235 (328)
T PRK14618        156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY  235 (328)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence            99999999999999988874322                 3556667777788888899999999999999999999999


Q ss_pred             HHHhh----ccccchhhhhc--ccccccC---C-CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018213          274 EVVSQ----GAISAPMYSLK--GPSMIES---L-YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL  343 (359)
Q Consensus       274 ~~~~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~  343 (359)
                      +++..    +++.|+.++++  ++.+.++   + +.++|.+.++.||++.+.+++++.++++|+.+++++++       +
T Consensus       236 ~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~  308 (328)
T PRK14618        236 GLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R  308 (328)
T ss_pred             cCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence            99876    36678888877  3467776   3 56678888999999999999999999999999999888       4


Q ss_pred             CCccHHHHHHHHHh
Q 018213          344 SDEDFSAVIEALKA  357 (359)
Q Consensus       344 ~~~d~~~~~~~~~~  357 (359)
                      ++.+..++++.+-+
T Consensus       309 ~~~~~~~~~~~~~~  322 (328)
T PRK14618        309 GGWDPLAGLRSLMG  322 (328)
T ss_pred             CCCCHHHHHHHHhc
Confidence            55666677666543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.95  E-value=2.9e-28  Score=222.39  Aligned_cols=176  Identities=13%  Similarity=0.117  Sum_probs=148.8

Q ss_pred             eeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhh
Q 018213            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG   83 (359)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG   83 (359)
                      ++|..+++ ..+++|++++++|++.|+++.+++.++.|.|.+.....                .++.++|+||||+|+||
T Consensus        92 V~nap~~n-a~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g----------------~el~gkTvGIiG~G~IG  154 (324)
T COG0111          92 VVNAPGGN-AISVAELVLALLLALARRIPDADASQRRGEWDRKAFRG----------------TELAGKTVGIIGLGRIG  154 (324)
T ss_pred             EEeCCCcc-hHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccccc----------------ccccCCEEEEECCCHHH
Confidence            44444443 35899999999999999999999999999998521111                12788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEe
Q 018213           84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus        84 ~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                      +.+|++++.+|++|++||+...+. .....+....+++++++++||||++|+|.+++|++++  +++.+..||+|+++||
T Consensus       155 ~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailIN  231 (324)
T COG0111         155 RAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILIN  231 (324)
T ss_pred             HHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEEE
Confidence            999999999999999999954332 2223456667899999999999999999999999999  8999999999999999


Q ss_pred             ccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213          164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE  199 (359)
Q Consensus       164 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  199 (359)
                      ++||..+++++|.++|+++.+.....+++..+|...
T Consensus       232 ~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~  267 (324)
T COG0111         232 AARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPA  267 (324)
T ss_pred             CCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCC
Confidence            999999999999999999988888888887776544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.94  E-value=1.7e-27  Score=217.97  Aligned_cols=177  Identities=13%  Similarity=0.121  Sum_probs=147.5

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|++..+.+.++.+.|.....+....+          ...++.+++|||||+|+
T Consensus        88 ~v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~----------~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         88 AVKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR----------PLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             EEEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc----------cccccCCCEEEEECCCH
Confidence            45556788776  8899999999999999999999999999974322110000          01238899999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++++.+|++|.+|||+....    ..+.. ..++++++++||+|++|+|.+++|++++  +++.++.||+|+++
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~a~l  228 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDGAIL  228 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCCeEE
Confidence            99999999999999999999965321    12333 3489999999999999999999999999  89999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ||++||..+++++|.++|+++.+. ...+++..+|..
T Consensus       229 IN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~  264 (311)
T PRK08410        229 INVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME  264 (311)
T ss_pred             EECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence            999999999999999999998888 778888777643

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.94  E-value=6.5e-26  Score=210.68  Aligned_cols=273  Identities=18%  Similarity=0.225  Sum_probs=202.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |+|+|||+|.||..+|..|+..|++|.+|+|+++..+.+.+.              ++....+++++++++|+|++|+| 
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~-   80 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP-   80 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC-
Confidence            689999999999999999999999999999998877776654              24456678888899999999997 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhc-----CCeeecCCCCCCCccccCCceEEEecCCH
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK  211 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  211 (359)
                      +.+++.++   +++.+.+++++++|+++++ .+.....+.+.+.+.     ...++..|....+.........++.+++.
T Consensus        81 ~~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~  157 (325)
T PRK00094         81 SQALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE  157 (325)
T ss_pred             HHHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence            57888888   7777778889999999754 333333344444332     33455566554333333445556667789


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCcc-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  274 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~-----------------~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~  274 (359)
                      +.++++.++|+..+.+++...+.                 |.....|+..|.+......++.|++.++++.|++++.+.+
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~  237 (325)
T PRK00094        158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG  237 (325)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence            99999999999999887776663                 3334466777788888899999999999999999999988


Q ss_pred             HHhhc----cccchhhhhcc--cccccCC-C-----CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          275 VVSQG----AISAPMYSLKG--PSMIESL-Y-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       275 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      ....+    ...++..+++.  ..+..+. +     ..+ .+.++.||++.+.++++++|+++|+++++++++       
T Consensus       238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------  309 (325)
T PRK00094        238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------  309 (325)
T ss_pred             ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence            76543    23344443332  2232222 1     112 456789999999999999999999999999987       


Q ss_pred             CCCccHHHHHHHHH
Q 018213          343 LSDEDFSAVIEALK  356 (359)
Q Consensus       343 ~~~~d~~~~~~~~~  356 (359)
                      .++.+...+++.+.
T Consensus       310 ~~~~~~~~~~~~~~  323 (325)
T PRK00094        310 YEGKDPREAVEDLM  323 (325)
T ss_pred             cCCCCHHHHHHHHh
Confidence            46777777777664

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.94  E-value=2.1e-27  Score=217.86  Aligned_cols=177  Identities=11%  Similarity=0.075  Sum_probs=148.4

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|+|+..  +++|++++++|+++|++..+.+.++.|.|.......+.             ..++.++++||||+|+
T Consensus        91 ~V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~-------------g~~L~gktvGIiG~G~  155 (323)
T PRK15409         91 LLMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWF-------------GTDVHHKTLGIVGMGR  155 (323)
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccc-------------cCCCCCCEEEEEcccH
Confidence            45566888776  89999999999999999999999999999643111110             1128899999999999


Q ss_pred             hhHHHHHHHH-HCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           82 MGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        82 iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      ||+.+|+++. .+|++|.+|+|.... +.....++.. .++++++++||+|++|+|.+++|++++  +++.+..||+|++
T Consensus       156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~  231 (323)
T PRK15409        156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAI  231 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeE
Confidence            9999999998 999999999987532 2223335544 489999999999999999999999999  8899999999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      +||++||..+++++|.++|+++.+.....+++..++.
T Consensus       232 lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~  268 (323)
T PRK15409        232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL  268 (323)
T ss_pred             EEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence            9999999999999999999999888888888877754

>PLN03139 formate dehydrogenase; Provisional

Probab=99.94  E-value=6.3e-27  Score=217.77  Aligned_cols=180  Identities=14%  Similarity=0.087  Sum_probs=152.1

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|+|...  +++|++++++|++.|++..+.+.++.|.|.......              ...++.+++|||||+|+
T Consensus       146 ~V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~--------------~~~~L~gktVGIVG~G~  209 (386)
T PLN03139        146 TVAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAY--------------RAYDLEGKTVGTVGAGR  209 (386)
T ss_pred             EEEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccC--------------CCcCCCCCEEEEEeecH
Confidence            44555655554  899999999999999999999999999997321100              01128899999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++|+.+|++|.+||++....+...+.|+....++++++++||+|++|+|.+++|++++  +++.+..|++|+++
T Consensus       210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~l  287 (386)
T PLN03139        210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLI  287 (386)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEE
Confidence            9999999999999999999998644444445567667799999999999999999999999999  78899999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE  199 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  199 (359)
                      ||++||..+++++|.++|+++.+.....+++..+|...
T Consensus       288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~  325 (386)
T PLN03139        288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPK  325 (386)
T ss_pred             EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCC
Confidence            99999999999999999999999888888888776543

>PRK07574 formate dehydrogenase; Provisional

Probab=99.94  E-value=7.1e-27  Score=217.62  Aligned_cols=177  Identities=14%  Similarity=0.085  Sum_probs=148.3

Q ss_pred             eeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhh
Q 018213            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG   83 (359)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG   83 (359)
                      ++|..+++ ..+++|++++++|++.|++..+.+.++.+.|........              ..++.+++|||||+|+||
T Consensus       140 V~n~~g~~-a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~--------------~~~L~gktVGIvG~G~IG  204 (385)
T PRK07574        140 VAEVTGSN-SISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSR--------------SYDLEGMTVGIVGAGRIG  204 (385)
T ss_pred             EEcCCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccc--------------ceecCCCEEEEECCCHHH
Confidence            34433433 248999999999999999999999999999974321100              112888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEe
Q 018213           84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus        84 ~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                      +.+|++|+.+|++|.+|||+....+.....++....++++++++||+|++|+|.+++|++++  +++.++.||+|+++||
T Consensus       205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN  282 (385)
T PRK07574        205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN  282 (385)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence            99999999999999999998644333334566666799999999999999999999999999  7899999999999999


Q ss_pred             ccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       164 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ++|+..+++++|.++|+++.+.....+++..++.
T Consensus       283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl  316 (385)
T PRK07574        283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA  316 (385)
T ss_pred             CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence            9999999999999999999888888888877654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.94  E-value=9.5e-27  Score=213.53  Aligned_cols=176  Identities=14%  Similarity=0.127  Sum_probs=147.0

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|.....+...  .        ....++.+++|||||+|+
T Consensus        91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~--~--------~~~~~l~gktvgIiG~G~  158 (317)
T PRK06487         91 TVCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL--D--------FPIVELEGKTLGLLGHGE  158 (317)
T ss_pred             EEEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc--c--------CcccccCCCEEEEECCCH
Confidence            45556777766  89999999999999999999999999999754321110  0        001128899999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++++.+|++|.+|+|.... .     ... ..++++++++||+|++|+|.+++|++++  +++.++.||+|+++
T Consensus       159 IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~ga~l  229 (317)
T PRK06487        159 LGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPGALL  229 (317)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCCeEE
Confidence            9999999999999999999986431 1     122 2489999999999999999999999999  89999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ||++||..+++++|.++|+++.+.....+++..+|..
T Consensus       230 IN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~  266 (317)
T PRK06487        230 INTARGGLVDEQALADALRSGHLGGAATDVLSVEPPV  266 (317)
T ss_pred             EECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC
Confidence            9999999999999999999998888888888777643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.94  E-value=1.6e-24  Score=199.18  Aligned_cols=266  Identities=13%  Similarity=0.118  Sum_probs=206.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+..           .+.|             +..+.++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            579999999999999999999999999999998655432           2333             2466788888999


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      +|+|+.++|...+.+..++  .++....+++.++ . |+.+......+.+.+...+..+.++|+.+...    .+++.++
T Consensus        83 ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~~ii-~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv  154 (308)
T PRK06129         83 ADYVQESAPENLELKRALF--AELDALAPPHAIL-A-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV  154 (308)
T ss_pred             CCEEEECCcCCHHHHHHHH--HHHHHhCCCcceE-E-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence            9999999998766666553  3443344444444 3 44444456678888766677778899875321    1345566


Q ss_pred             c---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213          208 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  284 (359)
Q Consensus       208 ~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~  284 (359)
                      +   ++++.++++.++++.+|+++++++..+.+.   ++++ +   +.+.+.|++.++++.|+++++++++++.+.+.+|
T Consensus       155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nr-l---~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~  227 (308)
T PRK06129        155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNR-L---QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW  227 (308)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHH-H---HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence            5   689999999999999999999998755443   3333 2   3467889999999999999999999999988887


Q ss_pred             hhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHH
Q 018213          285 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA  354 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~  354 (359)
                      .+  .+|.+..+.+.+++......||..+..+++++.+.|.|++.-..+.+....+.-.+..++..+.++
T Consensus       228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (308)
T PRK06129        228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW  295 (308)
T ss_pred             cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            77  578888888878888889999999999999999999999988877666677666777777777554

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.93  E-value=1.6e-26  Score=211.56  Aligned_cols=176  Identities=13%  Similarity=0.087  Sum_probs=146.2

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|++..+.+.++.+.|.....+...          .....++.+++|||||+|+
T Consensus        90 ~v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~l~gktvgIiG~G~  157 (314)
T PRK06932         90 AVKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYF----------DYPITDVRGSTLGVFGKGC  157 (314)
T ss_pred             EEEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCcccccc----------CCcccccCCCEEEEECCCH
Confidence            45555777776  88999999999999999999999999999743221100          0011238899999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++++.+|++|++|++....  ..   .. ...++++++++||+|++|+|.+++|++++  +++.++.||+|+++
T Consensus       158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~ga~l  229 (314)
T PRK06932        158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPTAFL  229 (314)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCCeEE
Confidence            9999999999999999999986421  11   11 13589999999999999999999999999  89999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++||..+++++|.++|+++.+.....+++..+|.
T Consensus       230 IN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~  265 (314)
T PRK06932        230 INTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP  265 (314)
T ss_pred             EECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence            999999999999999999999888888888877764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.93  E-value=1e-24  Score=200.52  Aligned_cols=257  Identities=19%  Similarity=0.228  Sum_probs=188.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      .++|+|+|||+|+||+++|+.|..+|++|.+|+|++.             .+++++++++|+|++++|. ..++.++   
T Consensus         2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---   64 (308)
T PRK14619          2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---   64 (308)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---
Confidence            3458999999999999999999999999999999753             3677888999999999985 5888888   


Q ss_pred             ccccc-cCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC---CCC----ccccCCceEEEecCCHHHHHHHHH
Q 018213          149 HGAAS-GMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS---GSK----KPAEDGQLIFLAAGDKSLYNTVAP  219 (359)
Q Consensus       149 ~~~~~-~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~g~~~~~~~v~~  219 (359)
                      +.+.. .+++++++|+++++ .+.....+.+.+..   .+.++|+.   ++.    .........++++++.+.++.+++
T Consensus        65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~  141 (308)
T PRK14619         65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQ  141 (308)
T ss_pred             HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHH
Confidence            66644 37789999998874 33333333333322   12334442   221    112234667788889999999999


Q ss_pred             HHHHhCCCeEEeCc-c--ChHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213          220 LLDIMGKSRFYLGD-V--GNGAAM--------------KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  282 (359)
Q Consensus       220 ll~~lg~~~~~~g~-~--~~~~~~--------------kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~  282 (359)
                      +|+..+.+++..++ .  ..+..+              ++..|.....+..++.|++.++++.|++++.+.++.  +.+.
T Consensus       142 ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd  219 (308)
T PRK14619        142 IFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGD  219 (308)
T ss_pred             HhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhh
Confidence            99999988887776 2  222333              366788888889999999999999999999998852  3334


Q ss_pred             chhhhhcccccccCCCCCCcchhHH----------------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCc
Q 018213          283 APMYSLKGPSMIESLYPTAFPLKHQ----------------QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE  346 (359)
Q Consensus       283 s~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~  346 (359)
                      ++.   ..+.+..+++..++.+..+                .||++.+.+++++.|+++|+.+++++++       +++.
T Consensus       220 ~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~  289 (308)
T PRK14619        220 LLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEI  289 (308)
T ss_pred             hhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCC
Confidence            333   2345555666555544444                8999999999999999999999999988       3555


Q ss_pred             cHHHHHHHHHh
Q 018213          347 DFSAVIEALKA  357 (359)
Q Consensus       347 d~~~~~~~~~~  357 (359)
                      +..++++.+-+
T Consensus       290 ~~~~~~~~l~~  300 (308)
T PRK14619        290 TPQQALEELME  300 (308)
T ss_pred             CHHHHHHHHHc
Confidence            66666666543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.93  E-value=6.4e-24  Score=201.89  Aligned_cols=255  Identities=14%  Similarity=0.113  Sum_probs=193.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc----------------cCCCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivi  132 (359)
                      ...|+|||||+|.||..+|..|+. |++|++||+++++++.+. .|..                .+++..+.+++||++|
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi   81 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI   81 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence            345899999999999999999887 699999999999988877 3332                2334445688999999


Q ss_pred             EeeCCh------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeec--------CCCCCCCc
Q 018213          133 AMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE--------APVSGSKK  196 (359)
Q Consensus       133 ~~~p~~------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~--------~~~~~~~~  196 (359)
                      +|+|.+      .++..++...+.+.+.+++|+++|+.|+..|...+.+.+...+.  |+.+.+        .++.++..
T Consensus        82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a  161 (425)
T PRK15182         82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK  161 (425)
T ss_pred             EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence            999987      34455553336777889999999999999999988765544332  444333        22333322


Q ss_pred             ccc-CCceEEEecCCHHHHHHHHHHHHHhC-CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213          197 PAE-DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  274 (359)
Q Consensus       197 ~~~-~~~~~~~~~g~~~~~~~v~~ll~~lg-~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~  274 (359)
                      ... .....++.|++++..+.+..+++.+. ..++.+++++.++..|++.|.+....+++++|+..+|++.|+|..++.+
T Consensus       162 ~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~  241 (425)
T PRK15182        162 KHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR  241 (425)
T ss_pred             cccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            222 22333566778888889999999886 3577889999999999999999999999999999999999999999999


Q ss_pred             HHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          275 VVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       275 ~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      .+...    |.+.         .+.|| +....+.||...++..+++.|+++++++++.++.+..
T Consensus       242 a~~~~----~~~~---------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~  293 (425)
T PRK15182        242 AAGSK----WNFL---------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM  293 (425)
T ss_pred             HhcCC----CCcc---------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            85533    2211         12344 4445568899999999999999999999988776543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.92  E-value=6.1e-26  Score=214.66  Aligned_cols=172  Identities=13%  Similarity=0.066  Sum_probs=147.2

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|.......   +             ++.+++|||||+|+
T Consensus       100 ~V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~---~-------------~L~gktvGIiG~G~  161 (409)
T PRK11790        100 PVFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGS---F-------------EVRGKTLGIVGYGH  161 (409)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCc---c-------------cCCCCEEEEECCCH
Confidence            34555788776  889999999999999999999999999997432110   1             28889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|.+||+++...    ..++....++++++++||+|++|+|.+++|++++  +++.+..||+|+++
T Consensus       162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~l  235 (409)
T PRK11790        162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAIL  235 (409)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence            99999999999999999999864321    1234456689999999999999999999999999  88999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++||..+++++|.++|+++.+.....+++..++.
T Consensus       236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~  271 (409)
T PRK11790        236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK  271 (409)
T ss_pred             EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            999999999999999999999888888888877653

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=99.92  E-value=5.3e-26  Score=199.55  Aligned_cols=176  Identities=13%  Similarity=0.121  Sum_probs=154.8

Q ss_pred             CeeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCC
Q 018213            1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG   80 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G   80 (359)
                      ++++..|.|++.  +++|++++++++++|++......++.|.|.+....+.                ++.++++||+|+|
T Consensus        94 i~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~----------------el~GKTLgvlG~G  155 (406)
T KOG0068|consen   94 ILVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGW----------------ELRGKTLGVLGLG  155 (406)
T ss_pred             eEEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeecceeee----------------EEeccEEEEeecc
Confidence            467888999998  9999999999999999999999999999985432221                2888999999999


Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      +||+.+|.++...|+.|+.||+-.. .+.....|++.. +++|++..||+|.+|+|.+++|++++  +++.+..||+|..
T Consensus       156 rIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVr  231 (406)
T KOG0068|consen  156 RIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVR  231 (406)
T ss_pred             cchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcE
Confidence            9999999999999999999998543 244556688776 89999999999999999999999999  8899999999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      +||++||..+|+.+|.++++++.+.....+++..++..
T Consensus       232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~  269 (406)
T KOG0068|consen  232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK  269 (406)
T ss_pred             EEEecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence            99999999999999999999987777777787776654

>PLN02306 hydroxypyruvate reductase

Probab=99.92  E-value=6.8e-26  Score=211.65  Aligned_cols=178  Identities=12%  Similarity=0.029  Sum_probs=145.9

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|+|...  +++|++++++|+++|++..+.+.++.|.|..+......             ..++.+++|||||+|+
T Consensus       111 ~V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~-------------g~~L~gktvGIiG~G~  175 (386)
T PLN02306        111 AVGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFV-------------GNLLKGQTVGVIGAGR  175 (386)
T ss_pred             EEEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccC-------------CcCCCCCEEEEECCCH
Confidence            45566777776  89999999999999999999999999988532211110             0128889999999999


Q ss_pred             hhHHHHHHHH-HCCCcEEEEcCCccch-hHH-HhCC------------CccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           82 MGTPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        82 iG~~ia~~l~-~~g~~V~~~d~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ||+.+|+++. .+|++|.+||+++... ... ...+            .....++++++++||+|++|+|.+++|++++ 
T Consensus       176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li-  254 (386)
T PLN02306        176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI-  254 (386)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc-
Confidence            9999999985 8999999999976421 110 1111            1234589999999999999999999999999 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                       +++.++.||+|+++||++||..+++++|.++|+++.+.....+++..++
T Consensus       255 -n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP  303 (386)
T PLN02306        255 -NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP  303 (386)
T ss_pred             -CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCC
Confidence             8999999999999999999999999999999999888888888888775

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.92  E-value=7.5e-26  Score=208.98  Aligned_cols=181  Identities=13%  Similarity=0.063  Sum_probs=148.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|+|+..  +++|++++++|++.|+++.+.+.++.|.|......... .        .....++.+++|||||+|+
T Consensus        92 ~v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~--------~~~g~~L~gktvgIiG~G~  160 (333)
T PRK13243         92 YVTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP-L--------MFLGYDVYGKTIGIIGFGR  160 (333)
T ss_pred             EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccc-c--------cccccCCCCCEEEEECcCH
Confidence            45556777665  89999999999999999999999999999742110000 0        0011238899999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++|..+|++|.+|||++... .....+... .++++++++||+|++|+|.+++|++++  +++.++.|++|+++
T Consensus       161 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ga~l  236 (333)
T PRK13243        161 IGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKPTAIL  236 (333)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence            99999999999999999999986542 222334443 589999999999999999999999999  78899999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++||..+++++|.++|+++.+.....+++..+|.
T Consensus       237 IN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~  272 (333)
T PRK13243        237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY  272 (333)
T ss_pred             EECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence            999999999999999999999888888888877754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.92  E-value=3.9e-23  Score=196.66  Aligned_cols=251  Identities=15%  Similarity=0.105  Sum_probs=185.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CCCHHHH---------------hhcCCEEEEe
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM  134 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivi~~  134 (359)
                      .|+|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ...++++               +++||+|++|
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            47899999999999999999999999999999998887654322211 1123332               2379999999


Q ss_pred             eCCh---------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC--------------eeecCC-
Q 018213          135 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP-  190 (359)
Q Consensus       135 ~p~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~--------------~~~~~~-  190 (359)
                      +|.+         ..+..++   +.+.+.+++|++||+.|+.+|...+.+...+.+.+.              .++.+| 
T Consensus        83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE  159 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE  159 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence            9976         4666666   777888999999999999999999999887766432              234555 


Q ss_pred             -CCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018213          191 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD  268 (359)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~  268 (359)
                       +.++...........+++| +++..++++++++.++..++++++++.++..|++.|.+....++.++|+..+|++.|+|
T Consensus       160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD  239 (415)
T PRK11064        160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN  239 (415)
T ss_pred             ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             3333322222333355677 99999999999999998888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      +.++.+.+.......    .+.|       -+|+....+.||...+   ..+.+.+.++++++.++-+..
T Consensus       240 ~~~v~~~~~~~~ri~----~l~p-------G~G~GG~ClpkD~~~L---~~~~~~~~~l~~~a~~~N~~~  295 (415)
T PRK11064        240 VWELIRLANRHPRVN----ILQP-------GPGVGGHCIAVDPWFI---VAQNPQQARLIRTAREVNDGK  295 (415)
T ss_pred             HHHHHHHhccCCCcc----cCCC-------CCCCCCccccccHHHH---HHhcCCccHHHHHHHHHHHHh
Confidence            999999887543211    1111       1223334456666554   334566677777776655444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.92  E-value=1.2e-25  Score=203.95  Aligned_cols=167  Identities=13%  Similarity=0.157  Sum_probs=142.4

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +++|+++.  ..+++|++++++|++.|+++.+.+.+++|.|.....     +.             +.+++|||||+|+|
T Consensus        74 ~~~~~g~~--~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~~-------------L~gktvgIiG~G~I  133 (303)
T PRK06436         74 LCSNAGAY--SISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----KL-------------LYNKSLGILGYGGI  133 (303)
T ss_pred             EEEcCCCC--cHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----CC-------------CCCCEEEEECcCHH
Confidence            34555333  249999999999999999999999999999974311     11             88899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      |+.+|++++.+|++|.+|||+...      .+.. ...++++++++||+|++|+|.+++|++++  +++.+..|++|+++
T Consensus       134 G~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~l  205 (303)
T PRK06436        134 GRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAI  205 (303)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEE
Confidence            999999999999999999997532      1232 24689999999999999999999999999  78899999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++|+.++++++|.++|+++.+.....+++..+|.
T Consensus       206 IN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~  241 (303)
T PRK06436        206 INVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI  241 (303)
T ss_pred             EECCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence            999999999999999999988788777888877653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.92  E-value=6.1e-26  Score=191.80  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=130.6

Q ss_pred             cccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE
Q 018213           21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW  100 (359)
Q Consensus        21 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~  100 (359)
                      ++++|+++|++..+.+.++.+.|......  .             ..++.+++|||||+|+||+.+|++++.+|++|++|
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~--~-------------~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~   65 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERF--P-------------GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY   65 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTT--T-------------BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCC--C-------------ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence            35778889999999999999999111100  0             11288899999999999999999999999999999


Q ss_pred             cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHH
Q 018213          101 NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK  180 (359)
Q Consensus       101 d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~  180 (359)
                      ||+..........++ ...+++|++++||+|++++|.+++|++++  +++.+..||+|+++||++|+..++++++.++++
T Consensus        66 d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   66 DRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             ESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             cccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            998865443445555 44599999999999999999999999999  899999999999999999999999999999999


Q ss_pred             hcCCeeecCCCCCCCccc
Q 018213          181 ATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~  198 (359)
                      ++.+.....+++..++..
T Consensus       143 ~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             TTSEEEEEESS-SSSSSS
T ss_pred             hccCceEEEECCCCCCCC
Confidence            998888888888776543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02928 oxidoreductase family protein

Probab=99.91  E-value=2.6e-25  Score=206.14  Aligned_cols=174  Identities=13%  Similarity=0.035  Sum_probs=144.8

Q ss_pred             eeeeccccc-cccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         3 ~~~~~~~~~-~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      +...|+|++ ...+++|++++++|+++|++..+.+.++.+.|...  ..   +.             +.+++|||||+|+
T Consensus       108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~--~~---~~-------------l~gktvGIiG~G~  169 (347)
T PLN02928        108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP--IG---DT-------------LFGKTVFILGYGA  169 (347)
T ss_pred             EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc--cc---cC-------------CCCCEEEEECCCH
Confidence            444566643 55689999999999999999999999999988631  11   11             7889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHH------------HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      ||+.+|++++.+|++|++|||+.......            ..... ...++++++++||+|++|+|.+++|++++  ++
T Consensus       170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~  246 (347)
T PLN02928        170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--ND  246 (347)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CH
Confidence            99999999999999999999974321111            00112 34589999999999999999999999999  88


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      +.++.||+|+++||++||..+++++|.++|+++.+.....+++..++.
T Consensus       247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~  294 (347)
T PLN02928        247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF  294 (347)
T ss_pred             HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence            999999999999999999999999999999999888888888877664

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.91  E-value=3.3e-25  Score=202.41  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=139.2

Q ss_pred             ccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHH
Q 018213           13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK   92 (359)
Q Consensus        13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~   92 (359)
                      ..+++|++++++|+++|++..+.+.++.+.|......     .             +++++|||||+|+||+.+|++|..
T Consensus        96 ~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----~-------------l~g~tvgIvG~G~IG~~vA~~l~a  157 (312)
T PRK15469         96 GEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----H-------------REDFTIGILGAGVLGSKVAQSLQT  157 (312)
T ss_pred             cHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----C-------------cCCCEEEEECCCHHHHHHHHHHHH
Confidence            3478999999999999999999988999999742211     1             677999999999999999999999


Q ss_pred             CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213           93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus        93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      +|++|.+|+++++.......  .....++++++++||+|++|+|.+++|++++  +++.+..|++|+++||++||..+++
T Consensus       158 fG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        158 WGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             CCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCH
Confidence            99999999987654321111  1124588999999999999999999999999  7889999999999999999999999


Q ss_pred             HHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          173 KLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       173 ~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ++|.++|+++.+.....+++..++.
T Consensus       234 ~aL~~aL~~g~i~gaalDVf~~EPl  258 (312)
T PRK15469        234 DDLLAALDSGKVKGAMLDVFSREPL  258 (312)
T ss_pred             HHHHHHHhcCCeeeEEecCCCCCCC
Confidence            9999999999888888888877654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.91  E-value=3.1e-25  Score=204.27  Aligned_cols=173  Identities=12%  Similarity=0.100  Sum_probs=147.1

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|+|++.  +++|++++++|++.|++..+.+.++.+.|.+....  ..+             ++.+++|||||+|.
T Consensus        94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~--~~~-------------~l~g~~VgIIG~G~  156 (330)
T PRK12480         94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEI--MSK-------------PVKNMTVAIIGTGR  156 (330)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCccccccc--Ccc-------------ccCCCEEEEECCCH
Confidence            45666899888  88999999999999999999998888877432111  001             27889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.|+.+|++|.+||++++.....    .....++++++++||+|++|+|.++++.+++  +++.++.|++|+++
T Consensus       157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavl  230 (330)
T PRK12480        157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAIL  230 (330)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEE
Confidence            99999999999999999999987543221    3345689999999999999999999999999  68899999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++||..+++++|.++|+++.+.....+++..++.
T Consensus       231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  266 (330)
T PRK12480        231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA  266 (330)
T ss_pred             EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence            999999999999999999999888888888887763

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.91  E-value=3.9e-25  Score=215.99  Aligned_cols=174  Identities=13%  Similarity=0.113  Sum_probs=148.5

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|...  +++|++++++|+++|+++.+.+.++.|.|......+   .             ++.+++|||||+|+|
T Consensus        88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g---~-------------~l~gktvgIiG~G~I  149 (525)
T TIGR01327        88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMG---T-------------ELYGKTLGVIGLGRI  149 (525)
T ss_pred             EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCc---c-------------ccCCCEEEEECCCHH
Confidence            4445777665  899999999999999999999999999997432111   1             288899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|++|..+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++  +++.++.||+|+++|
T Consensus       150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lI  226 (525)
T TIGR01327       150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIV  226 (525)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEE
Confidence            999999999999999999986432 33344566666789999999999999999999999999  788999999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |++||..+++++|.++|+++.+.....+++..+|.
T Consensus       227 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  261 (525)
T TIGR01327       227 NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP  261 (525)
T ss_pred             EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence            99999999999999999999988888888877663

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.91  E-value=2.2e-22  Score=189.27  Aligned_cols=249  Identities=16%  Similarity=0.095  Sum_probs=185.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh----------------CCCcc--CCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivi~  133 (359)
                      |+|+|||+|.||..+|..++. ||+|++||+++++.+.+.+                .+...  ..+..+++.++|+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            579999999999999987775 9999999999988877654                22223  2346677889999999


Q ss_pred             eeCCh----------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC---ccccC
Q 018213          134 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK---KPAED  200 (359)
Q Consensus       134 ~~p~~----------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~  200 (359)
                      |+|.+          ..++.++   +++.. +++|.++|+.|+.+|...+.+.+.+.+.++.+  .|.+-.+   .....
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~  153 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL  153 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence            99976          4556666   66665 68999999999999999999998887665544  3332211   11122


Q ss_pred             CceEEEecCCHHHHHHHHHHHHH--hCCCeE-EeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          201 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       201 ~~~~~~~~g~~~~~~~v~~ll~~--lg~~~~-~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      .+..+++|++++..+++.+++..  ++..+. ++++++.++..|++.|.+.+..++.++|+..+|++.|+|..++.+.+.
T Consensus       154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~  233 (388)
T PRK15057        154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC  233 (388)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence            33367788888888888888854  554444 688999999999999999999999999999999999999999999988


Q ss_pred             hccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          278 QGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       278 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      .....++.       .+  ..-+|+....+.||...+...+  .+++.++++++.++-+..
T Consensus       234 ~d~ri~~~-------~l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~  283 (388)
T PRK15057        234 LDPRIGNH-------YN--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR  283 (388)
T ss_pred             CCCCCCCc-------cC--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence            64322211       11  0112344556788887775544  567888888887665544

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.90  E-value=1.5e-24  Score=211.85  Aligned_cols=173  Identities=14%  Similarity=0.166  Sum_probs=147.3

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|+..  +++|++++++|+++|+++.+.+.++.|.|.......   .             ++.+++|||||+|+|
T Consensus        90 V~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g---~-------------~l~gktvgIiG~G~I  151 (526)
T PRK13581         90 VVNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKFMG---V-------------ELYGKTLGIIGLGRI  151 (526)
T ss_pred             EEeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccc---c-------------ccCCCEEEEECCCHH
Confidence            4445677665  899999999999999999999999999997421111   1             278899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|++++.+|++|.+|||+... +.....++... ++++++++||+|++|+|.+++|++++  +++.++.||+|+++|
T Consensus       152 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lI  227 (526)
T PRK13581        152 GSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRII  227 (526)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEE
Confidence            999999999999999999996532 33344566665 89999999999999999999999999  788999999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |++|+..+++++|.++|+++.+.....+++..+|.
T Consensus       228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  262 (526)
T PRK13581        228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP  262 (526)
T ss_pred             ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence            99999999999999999999888777778776653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.90  E-value=4.9e-24  Score=191.85  Aligned_cols=167  Identities=16%  Similarity=0.111  Sum_probs=145.7

Q ss_pred             ccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHH
Q 018213           13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK   92 (359)
Q Consensus        13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~   92 (359)
                      ..++|+++++++|..+|++..++++++.|.|.+....++..              .+.++||||+|+|+||+.+|++|..
T Consensus       118 ~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~--------------~~~gK~vgilG~G~IG~~ia~rL~~  183 (336)
T KOG0069|consen  118 TDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGY--------------DLEGKTVGILGLGRIGKAIAKRLKP  183 (336)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccc--------------cccCCEEEEecCcHHHHHHHHhhhh
Confidence            34889999999999999999999999999995444333321              1788999999999999999999999


Q ss_pred             CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213           93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus        93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      ||+.+.+++|++...+...+.+.. ..+.++++.++|+|++|+|++++|++++  |++++.+|++|.++||++||...++
T Consensus       184 Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide  260 (336)
T KOG0069|consen  184 FGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDE  260 (336)
T ss_pred             ccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccH
Confidence            997788888887766655555555 4589999999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeeecCCCCCCCc
Q 018213          173 KLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       173 ~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +++.++|+++.+.-.+.+++..++
T Consensus       261 ~~l~eaL~sG~i~~aGlDVf~~EP  284 (336)
T KOG0069|consen  261 EALVEALKSGKIAGAGLDVFEPEP  284 (336)
T ss_pred             HHHHHHHhcCCcccccccccCCCC
Confidence            999999999988888888887776

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.90  E-value=4.1e-22  Score=178.77  Aligned_cols=256  Identities=21%  Similarity=0.279  Sum_probs=209.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~~p~~~~~~~  143 (359)
                      ..||+||+|.||+.+|..+...|++|.+|+|++++.+.+.+.     .+..+.+++|++   +...-|++.+.....+..
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            569999999999999999999999999999999998887654     345567888775   457788888855566688


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++   +++++.|.+|.++||-++..-.|+..-.+.|.+.|+.|++..++|++..+..|+. ++.||++++.+.+.++|..
T Consensus        84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~  159 (473)
T COG0362          84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK  159 (473)
T ss_pred             HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence            88   8899999999999999999999999999999999999999999999999998887 5799999999999999998


Q ss_pred             hCC------CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhccccc
Q 018213          224 MGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSM  293 (359)
Q Consensus       224 lg~------~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~  293 (359)
                      +..      ++.++|+-|.++..|+++|.+.+.-+++++|++.+++. .|++.+++.++..   .+...|.+.+-+..-+
T Consensus       160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL  239 (473)
T COG0362         160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL  239 (473)
T ss_pred             HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            853      36788999999999999999999999999999999998 8999888877765   4566677766555444


Q ss_pred             ccCCCCCCcc-hhHHH-----HHH-HHHHHHHHhcCCCchHHHHH
Q 018213          294 IESLYPTAFP-LKHQQ-----KDL-RLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       294 ~~~~~~~~~~-~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~  331 (359)
                      ...|-..+.. ++..+     |.+ ++....|-+.|+|++.+...
T Consensus       240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ea  284 (473)
T COG0362         240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEA  284 (473)
T ss_pred             hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHH
Confidence            4444443322 22221     111 56677788899999876544

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.89  E-value=8.1e-24  Score=195.57  Aligned_cols=173  Identities=11%  Similarity=0.092  Sum_probs=144.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.+.|.+.... . .+             ++.+++|||||+|+
T Consensus        94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~-~-~~-------------~l~g~~VgIIG~G~  156 (332)
T PRK08605         94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPI-L-SR-------------SIKDLKVAVIGTGR  156 (332)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCccccccc-c-cc-------------eeCCCEEEEECCCH
Confidence            45566888876  89999999999999999999998999988532211 0 01             28889999999999


Q ss_pred             hhHHHHHHH-HHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           82 MGTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        82 iG~~ia~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      ||+.+|+.| ..+|++|++||+++...  . ...+....++++++++||+|++|+|.+..++.++  +.+.++.|++|++
T Consensus       157 IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gai  231 (332)
T PRK08605        157 IGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAV  231 (332)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcE
Confidence            999999999 67899999999986532  1 2234555689999999999999999999999988  6778899999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +||++||..++++++.++++++.+.....+++..++
T Consensus       232 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep  267 (332)
T PRK08605        232 FVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER  267 (332)
T ss_pred             EEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence            999999999999999999999988888888887664

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.87  E-value=2.7e-21  Score=180.78  Aligned_cols=259  Identities=20%  Similarity=0.260  Sum_probs=180.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-----------------cCCCHHHHhhcCCEEEEe
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivi~~  134 (359)
                      |+|+|||+|.||..+|..|.+.|++|++++|++. .+.+.+.|..                 ...+. +.+..+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            7899999999999999999999999999999653 3445544432                 12344 556789999999


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC--C---CCCCCcc---ccCCceEEE
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKKP---AEDGQLIFL  206 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~--~---~~~~~~~---~~~~~~~~~  206 (359)
                      +| +.++..++   +.+.+.++++++|+++.++.. ..+.+.+.+...  .++.+  +   +..++..   ...+...+ 
T Consensus        81 vk-~~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-  152 (341)
T PRK08229         81 VK-SAATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI-  152 (341)
T ss_pred             ec-CcchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe-
Confidence            96 56777887   777777888999988866533 334566665432  22221  1   1211111   12333322 


Q ss_pred             ecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 018213          207 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--------------------MATFSEGLLHSEKVG  266 (359)
Q Consensus       207 ~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~--------------------~~~~~Ea~~l~~~~G  266 (359)
                       + +.+.++++.++|+..+.++.+.++++...|.|++.|.+....                    ..++.|++.++++.|
T Consensus       153 -~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G  230 (341)
T PRK08229        153 -E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG  230 (341)
T ss_pred             -c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence             2 335578899999999999999999999999999999643322                    377899999999999


Q ss_pred             CCHHHHHHHHhhc-----cccchhhhhcccccccCCCCCCcchhHHHHHHH------------HHHHHHHhcCCCchHHH
Q 018213          267 LDPNVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR------------LALGLAESVSQSTPIAA  329 (359)
Q Consensus       267 i~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~g~~~p~~~  329 (359)
                      ++++.+.++..+.     ...++++....+.+...++..   ...+.+|+.            .+++.++++|+++|+++
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~  307 (341)
T PRK08229        231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA  307 (341)
T ss_pred             CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence            9876543332222     123344443333333333321   245777776            79999999999999999


Q ss_pred             HHHHHHHHHHHCCCCC
Q 018213          330 AANELYKVAKSHGLSD  345 (359)
Q Consensus       330 ~~~~~~~~a~~~g~~~  345 (359)
                      .++++++.+.+.|...
T Consensus       308 ~~~~~~~~~~~~~~~~  323 (341)
T PRK08229        308 RLCALVHEAERAGARP  323 (341)
T ss_pred             HHHHHHHHHHhCCCcC
Confidence            9999999999887543

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.87  E-value=1.9e-20  Score=169.00  Aligned_cols=250  Identities=18%  Similarity=0.201  Sum_probs=176.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC----cEEEE-cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      |||+|||+|+||.++++.|.+.|+    +|++| +|++++.+.+.+.|+....+..++++++|+||+|+| +..++.++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            679999999999999999999998    89998 999888777777888888889999999999999995 88899998 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  223 (359)
                        .++.+.+++++++|++..+..  .+.+.+.+...  .++. .|..+....  .+...+..+  ++++.++.++++|+.
T Consensus        79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~~~~--~~~~~l~~~~~~~~~~~~~v~~l~~~  150 (266)
T PLN02688         79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPCLVG--EAASVMSLGPAATADDRDLVATLFGA  150 (266)
T ss_pred             --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHHHHh--CceEEEEeCCCCCHHHHHHHHHHHHh
Confidence              677777888999997755533  33444444322  4553 554433222  222222222  378899999999999


Q ss_pred             hCCCeEEeCccChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhh-hcc--cccc-cCC
Q 018213          224 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS-LKG--PSMI-ESL  297 (359)
Q Consensus       224 lg~~~~~~g~~~~~~~~kl--~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~--~~~~-~~~  297 (359)
                      +|. ++++++.......-+  ....+.+.++.++.|+   +.+.|++++++.+++..+...++.+- ...  +..+ ..-
T Consensus       151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v  226 (266)
T PLN02688        151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV  226 (266)
T ss_pred             CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            999 888765221222211  2234456666777777   68899999999999998766555432 111  1111 112


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      ..|+.+       +...++..++.|++..+.+++.+.++++.+.+
T Consensus       227 ~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~  264 (266)
T PLN02688        227 TSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS  264 (266)
T ss_pred             CCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            233332       34456778889999999999999999998764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.86  E-value=1.7e-20  Score=168.07  Aligned_cols=261  Identities=17%  Similarity=0.199  Sum_probs=200.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ++|+|||.|.+|+++|..|+.+||+|.+|.|+++..+++...              ++..+.++.++++++|+|++++| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            789999999999999999999999999999998877666542              23457789999999999999998 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChH-H----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHH
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-T----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS  212 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  212 (359)
                      +..++.++   +++...++++..+++++-|-.. +    .+.+.+.+....+.++..|.+..+......+.+.+.+.|.+
T Consensus        81 s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~  157 (329)
T COG0240          81 SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE  157 (329)
T ss_pred             hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence            78999998   7777788999999999877432 2    33444444444578888999988887777778888888999


Q ss_pred             HHHHHHHHHHHhCCCeEEeCc---cChHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018213          213 LYNTVAPLLDIMGKSRFYLGD---VGNGAAMKLV--------------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV  275 (359)
Q Consensus       213 ~~~~v~~ll~~lg~~~~~~g~---~~~~~~~kl~--------------~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~  275 (359)
                      ..++++.+|+.--++++...|   ...+.++|-+              .|.-.+.+..++.|+.++....|-.++++..+
T Consensus       158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL  237 (329)
T COG0240         158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL  237 (329)
T ss_pred             HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence            999999999987788877766   3334444433              36666778899999999999999999888776


Q ss_pred             Hhhc----cccchhhhhc--ccccccCCC-----CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018213          276 VSQG----AISAPMYSLK--GPSMIESLY-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK  336 (359)
Q Consensus       276 ~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~  336 (359)
                      ...+    ++.|+..+++  +..+.++.-     .....+.++.+....+.++++++++++|+.+++++++.
T Consensus       238 sGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~  309 (329)
T COG0240         238 SGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY  309 (329)
T ss_pred             ccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            6544    4455555543  222333311     01123455677789999999999999999999999885

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.85  E-value=4.9e-20  Score=179.44  Aligned_cols=198  Identities=14%  Similarity=0.100  Sum_probs=153.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  131 (359)
                      |+|+|||+|.||..+|..|...|++|++||+++++.+.+.+                   .+ +..++++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            68999999999999999999999999999999877654321                   12 56678898999999999


Q ss_pred             EEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCC-
Q 018213          132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD-  210 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  210 (359)
                      +.++|...+++..++  .++...++++.+| .+++..+. ...+.+.+...+..++.+|+...    ..++++.+++++ 
T Consensus        85 ieavpe~~~vk~~l~--~~l~~~~~~~~iI-~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~  156 (495)
T PRK07531         85 QESVPERLDLKRRVL--AEIDAAARPDALI-GSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK  156 (495)
T ss_pred             EEcCcCCHHHHHHHH--HHHHhhCCCCcEE-EEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence            999998888887664  4455556677654 44444433 33677777777777888887632    234667777774 


Q ss_pred             --HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhccccchh
Q 018213          211 --KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT-FSEGLLHSEKVGLDPNVLVEVVSQGAISAPM  285 (359)
Q Consensus       211 --~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~-~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~  285 (359)
                        ++.++++.++++.+|.++++++.        .+.|++.+.+..+ +.|++.++++.|+++++++++++.+.+.+|.
T Consensus       157 t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~  226 (495)
T PRK07531        157 TSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA  226 (495)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence              79999999999999999998873        3345555555555 5999999999999999999999988777654

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.85  E-value=1.3e-21  Score=181.55  Aligned_cols=153  Identities=10%  Similarity=0.057  Sum_probs=125.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|...  +++|++++++|.+.|+.          .|.                        +.+++|||||+|+
T Consensus        83 ~v~napg~na~--aVAE~~~~~lL~l~r~~----------g~~------------------------L~gktvGIIG~G~  126 (378)
T PRK15438         83 GFSAAPGCNAI--AVVEYVFSSLLMLAERD----------GFS------------------------LHDRTVGIVGVGN  126 (378)
T ss_pred             EEEECCCcCch--HHHHHHHHHHHHHhccC----------CCC------------------------cCCCEEEEECcCH
Confidence            34445666555  88999999999888851          111                        6779999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhH----HHHHhcccccccccCCC
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGP  157 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~----~~~~~~~~~~~~~~l~~  157 (359)
                      ||+.+|+++..+|++|.+||+.....    ... ....++++++++||||++|+|.+++    |.+++  +++.+..|++
T Consensus       127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~  199 (378)
T PRK15438        127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKP  199 (378)
T ss_pred             HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCC
Confidence            99999999999999999999753221    111 1346899999999999999999885    99999  8899999999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |+++||++||..+++++|.++|+++.+.....+++..+|.
T Consensus       200 gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~  239 (378)
T PRK15438        200 GAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE  239 (378)
T ss_pred             CcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            9999999999999999999999998877777777776653

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.85  E-value=6.7e-20  Score=166.29  Aligned_cols=250  Identities=15%  Similarity=0.205  Sum_probs=170.0

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCcc-chhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      .|+|+|||+|+||.++++.|...|    ++|++++|+++ +.+.+.. .|+....+..++++++|+||+++| +.+...+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA   81 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence            478999999999999999999988    78999999764 4455544 377777888899999999999996 8888888


Q ss_pred             hcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHH
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP  219 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~  219 (359)
                      +   +++.+.++++++||++..+ .+.   .+.+.+. .+..++. .|..   +.........++++   +++.++.+++
T Consensus        82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn~---~~~~~~~~t~~~~~~~~~~~~~~~v~~  151 (279)
T PRK07679         82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPNT---SAAILKSATAISPSKHATAEHIQTAKA  151 (279)
T ss_pred             H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCCH---HHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence            8   7777777889999997444 443   3444332 2223332 3321   12222344455565   3678899999


Q ss_pred             HHHHhCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hhhh--hcccccc
Q 018213          220 LLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PMYS--LKGPSMI  294 (359)
Q Consensus       220 ll~~lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s-~~~~--~~~~~~~  294 (359)
                      +|+.+|..+ .+.+........+.  .+.+.+.++.++.|   .+.+.|++.+++.+++..+...+ .++.  ...+..+
T Consensus       152 l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e---~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l  227 (279)
T PRK07679        152 LFETIGLVS-VVEEEDMHAVTALSGSGPAYIYYVVEAMEK---AAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSIL  227 (279)
T ss_pred             HHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            999999854 44332111111111  12233333333333   47999999999999999864333 4443  3455666


Q ss_pred             cCCC-CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          295 ESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       295 ~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      .+++ .|+++...+       ++..++.|+.--+.+++.+.++++.+.|
T Consensus       228 ~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~  269 (279)
T PRK07679        228 RKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG  269 (279)
T ss_pred             HHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            6677 677765554       5567788999999999999999988764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=1.1e-18  Score=158.50  Aligned_cols=257  Identities=17%  Similarity=0.142  Sum_probs=196.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-------------------C-CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv  131 (359)
                      |||.|||.|.+|...+..|+..||+|+++|.++++++.+.+.                   | ...+++.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            789999999999999999999999999999999887765531                   1 45577888999999999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC----CeeecCCCCCCCcc-
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKP-  197 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~-  197 (359)
                      ++|+|.|.         .++.++   +++.+.++..+++|+-|+.++.+.+.+.+.+....    ..++.-|-|=.+.. 
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A  157 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence            99998764         344555   67777887779999999999999998888776543    34555665533322 


Q ss_pred             --ccCCceEEEecCCH-HHHHHHHHHHHHh--CCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018213          198 --AEDGQLIFLAAGDK-SLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  272 (359)
Q Consensus       198 --~~~~~~~~~~~g~~-~~~~~v~~ll~~l--g~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~  272 (359)
                        -...+.-+++|... .+.+.+++++..+  ...++...+...++..|++.|.+++.-++.++|...+|++.|++..++
T Consensus       158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V  237 (414)
T COG1004         158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV  237 (414)
T ss_pred             hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence              22344456667644 4577888888765  344556666677999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213          273 VEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  340 (359)
Q Consensus       273 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  340 (359)
                      .+.+.....-++.       .++  ...|+....+-||+...+..++++|.+.++++++.+.-+....
T Consensus       238 ~~gIGlD~RIG~~-------fl~--aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~  296 (414)
T COG1004         238 AEGIGLDPRIGNH-------FLN--AGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKD  296 (414)
T ss_pred             HHHcCCCchhhHh-------hCC--CCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            8887753221111       111  1123445567899999999999999999999999887666544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.84  E-value=5e-21  Score=178.31  Aligned_cols=153  Identities=12%  Similarity=0.090  Sum_probs=125.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|...  +++|++++++|++.|+.            .         ..             +.+++|||||+|+
T Consensus        83 ~v~napg~na~--aVAE~v~~~lL~l~r~~------------g---------~~-------------l~gktvGIIG~G~  126 (381)
T PRK00257         83 TWSSAPGCNAR--GVVDYVLGSLLTLAERE------------G---------VD-------------LAERTYGVVGAGH  126 (381)
T ss_pred             EEEECCCcChH--HHHHHHHHHHHHHhccc------------C---------CC-------------cCcCEEEEECCCH
Confidence            34455776666  78889999999877741            0         11             6779999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChh----HHHHHhcccccccccCCC
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGP  157 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~----~~~~~~~~~~~~~~~l~~  157 (359)
                      ||+.+|+++..+|++|.+||+.....     .+.....++++++++||+|++|+|.++    .|.+++  +++.+..|++
T Consensus       127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~  199 (381)
T PRK00257        127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRP  199 (381)
T ss_pred             HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCC
Confidence            99999999999999999999854321     122234589999999999999999987    599999  7889999999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |+++||++||..+++++|.++++++.+.....+++..+|.
T Consensus       200 gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~  239 (381)
T PRK00257        200 GAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ  239 (381)
T ss_pred             CeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence            9999999999999999999999988777777777766653

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.83  E-value=3.5e-18  Score=164.00  Aligned_cols=252  Identities=16%  Similarity=0.134  Sum_probs=188.0

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCC-------------------CccCCCHHHHhhcCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLG-------------------AKYQPSPDEVAASCD  129 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~aD  129 (359)
                      +|+|+|||+|.+|..+|..|+..  |++|+++|.++++++.+.+.+                   ....++.++.+++||
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad   80 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD   80 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence            47899999999999999999987  488999999998877654321                   234456677889999


Q ss_pred             EEEEeeCChh--------------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--C--CeeecCCC
Q 018213          130 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPV  191 (359)
Q Consensus       130 ivi~~~p~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~--~~~~~~~~  191 (359)
                      ++|+|+|.|.              .+..++   +++.+.++++.+||.-|+.++...+.+...+.+.  |  +.+...|-
T Consensus        81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE  157 (473)
T PLN02353         81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE  157 (473)
T ss_pred             EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence            9999997553              344555   6777888999999999999999999998887763  3  34445665


Q ss_pred             CCCC---ccccCCceEEEecCC-----HHHHHHHHHHHHHhCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018213          192 SGSK---KPAEDGQLIFLAAGD-----KSLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS  262 (359)
Q Consensus       192 ~~~~---~~~~~~~~~~~~~g~-----~~~~~~v~~ll~~lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~  262 (359)
                      +-.+   ......+..+++|+.     +++.+.+.++++.+-. .++.+.++..++..|++.|.+....++.++|...+|
T Consensus       158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lc  237 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (473)
T ss_pred             ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5333   222234444555652     3457888899888752 456677888899999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCC--chHHHHHHHH
Q 018213          263 EKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS--TPIAAAANEL  334 (359)
Q Consensus       263 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~  334 (359)
                      ++.|+|..++.+.+......++       ....  .-+|+....+.||...+...+++.|++  .++++++.++
T Consensus       238 e~~giD~~eV~~~~~~d~rig~-------~~l~--PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i  302 (473)
T PLN02353        238 EATGADVSQVSHAVGKDSRIGP-------KFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM  302 (473)
T ss_pred             HHhCCCHHHHHHHhCCCCcCCC-------CCCC--CCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            9999999999988875432111       1110  112334456789999999999999998  7777666543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.82  E-value=1.8e-18  Score=159.73  Aligned_cols=199  Identities=16%  Similarity=0.200  Sum_probs=159.6

Q ss_pred             CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCcc-----chhHHHhCCCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~  126 (359)
                      |||.|.|+|+-                    |..+|..|++.|++|++|||+++     ..+.+.+.|+..+.+..++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~   80 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK   80 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence            56778888875                    88999999999999999999876     334456678888888889999


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH-HHHHHHHHh----cCCeeec-CCCCCCCccccC
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKA----TGASFLE-APVSGSKKPAED  200 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~  200 (359)
                      ++|+||+++|....++.++   ..+.+.++++++|||+|++.+... +.+.+.+..    .++.+.+ .++.+.+    .
T Consensus        81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae----~  153 (342)
T PRK12557         81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP----Q  153 (342)
T ss_pred             CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc----c
Confidence            9999999999666588998   778888999999999999998876 566666642    2444432 3333332    2


Q ss_pred             CceEEEecC--------CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018213          201 GQLIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  272 (359)
Q Consensus       201 ~~~~~~~~g--------~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~  272 (359)
                      +...++.++        +++.++++.++|+.+|.++++++ ++.+...|+++|.+.+...++.+|++.++++.|.++.++
T Consensus       154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~  232 (342)
T PRK12557        154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM  232 (342)
T ss_pred             chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            333444443        88999999999999999887777 588999999999999999999999999999999999888


Q ss_pred             HHHHhh
Q 018213          273 VEVVSQ  278 (359)
Q Consensus       273 ~~~~~~  278 (359)
                      .+.+..
T Consensus       233 ~~~~~~  238 (342)
T PRK12557        233 IEKQIL  238 (342)
T ss_pred             HHHHHH
Confidence            766553

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.82  E-value=8e-19  Score=155.26  Aligned_cols=257  Identities=18%  Similarity=0.251  Sum_probs=204.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC---C--CccCCCHHHHh---hcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---G--AKYQPSPDEVA---ASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~aDivi~~~p~~~~~  141 (359)
                      ..+.||+||++.||+.++......|+.|.+|+|+.++++++.+.   |  +....|++|++   +...+|++.+.....+
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV   84 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV   84 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence            34679999999999999999999999999999999998877653   2  34466888886   4578888888777788


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL  221 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll  221 (359)
                      ..++   +++.+.|.+|.+|||-++....++..-.+.+..+|+-|+++.++|++..+..++. ++.+|+++++..+.++|
T Consensus        85 D~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~if  160 (487)
T KOG2653|consen   85 DQFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIF  160 (487)
T ss_pred             HHHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHH
Confidence            8888   8899999999999999999888888888999999999999999999999988887 57899999999999999


Q ss_pred             HHhC-------CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhhcc
Q 018213          222 DIMG-------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKG  290 (359)
Q Consensus       222 ~~lg-------~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~~---~~~~s~~~~~~~  290 (359)
                      ..+.       ..+.++|+-|+++..|++.|.+.+.-++++.|++.++++ .|++-+++.+++..   +...|.+.+-+.
T Consensus       161 q~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~  240 (487)
T KOG2653|consen  161 QKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITA  240 (487)
T ss_pred             HHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhH
Confidence            7763       346789999999999999999999999999999999999 88998888877764   333444444332


Q ss_pred             cccccCCCCCCcchhHHHHHH-------HHHHHHHHhcCCCchHHHHH
Q 018213          291 PSMIESLYPTAFPLKHQQKDL-------RLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~~  331 (359)
                      +.+.-.+ ..+..+-.-..|.       .+....+.++|+|.|++..+
T Consensus       241 dIlk~~d-~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~ea  287 (487)
T KOG2653|consen  241 DILKFKD-EDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEA  287 (487)
T ss_pred             HHhheec-cCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHH
Confidence            2221111 1222221112222       55667788899999877554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.82  E-value=1.8e-18  Score=160.56  Aligned_cols=270  Identities=14%  Similarity=0.156  Sum_probs=177.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--C------------CccCCCHHHHh-hcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivi~~~p  136 (359)
                      |+|+|||+|.||.++|..|++.|++|.+|+|+++..+.+.+.  +            +....+.++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            579999999999999999999999999999988766655542  1            12335566665 58999999995


Q ss_pred             ChhHHHHHhcccccccc-cCCCCCEEEeccCCChHH-----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCC
Q 018213          137 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD  210 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  210 (359)
                       +.++..++   +++.+ .++++..++.+..|....     .+.+.+.+....+..+..|.+..+........+.+.+.+
T Consensus        81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~  156 (326)
T PRK14620         81 -TQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN  156 (326)
T ss_pred             -HHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence             88999998   77776 777787777777765321     334444443333344444443222112222233444556


Q ss_pred             HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 018213          211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-----------------MMATFSEGLLHSEKVGL--DPNV  271 (359)
Q Consensus       211 ~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~-----------------~~~~~~Ea~~l~~~~Gi--~~~~  271 (359)
                      .+..+++.++|+.-+.++....+.....|.|++.|.+...                 +..++.|+..++++.|.  ++++
T Consensus       157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~  236 (326)
T PRK14620        157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT  236 (326)
T ss_pred             HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            6666778888888888888888866688999988875433                 35688999999999987  7888


Q ss_pred             HH------HHHhhccccchhhhhcc-------cccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          272 LV------EVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       272 ~~------~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      +.      +++....  +...+++.       ..+.++......+.-++....+.+.++++++|+++|+++++++++   
T Consensus       237 ~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~---  311 (326)
T PRK14620        237 LIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL---  311 (326)
T ss_pred             hhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH---
Confidence            84      4543211  11111111       122222111111222233445789999999999999999999987   


Q ss_pred             HHCCCCCccHHHHHHH
Q 018213          339 KSHGLSDEDFSAVIEA  354 (359)
Q Consensus       339 ~~~g~~~~d~~~~~~~  354 (359)
                          +++.+...+++.
T Consensus       312 ----~~~~~~~~~~~~  323 (326)
T PRK14620        312 ----YENISLEKTISV  323 (326)
T ss_pred             ----hCCCCHHHHHHH
Confidence                345555555544

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.81  E-value=2.1e-18  Score=160.54  Aligned_cols=275  Identities=16%  Similarity=0.147  Sum_probs=193.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC---------------CccCCCHHHHhhcCCEEEEe
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~  134 (359)
                      .+|+|+|||+|.||.++|..|+..| +|.+|.|+++..+.+.+.+               +....++++.++++|+|+++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila   84 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG   84 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence            3488999999999999999999999 6888889887766655431               12345777888999999999


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCCChHH-----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG  209 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  209 (359)
                      +| +..++.++   +++.+.++++..+|+++.|-...     .+.+.+.+.......+..|.+..+.........++.+.
T Consensus        85 vp-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~  160 (341)
T PRK12439         85 VP-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMP  160 (341)
T ss_pred             eC-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence            97 88899998   88888888888899988875532     23444444322334455665544333333333445556


Q ss_pred             CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHHH
Q 018213          210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG-----------------SMMATFSEGLLHSEKVGLDPNVL  272 (359)
Q Consensus       210 ~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~-----------------~~~~~~~Ea~~l~~~~Gi~~~~~  272 (359)
                      +++..+.+.++|+.-+.+++...|.-..+|.|.+-|.++.                 .+..++.|+..++++.|.+++++
T Consensus       161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~  240 (341)
T PRK12439        161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF  240 (341)
T ss_pred             CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            7788899999999999999888885558888877765443                 35678999999999999999998


Q ss_pred             HHHHhhc----cccchhhhhc--ccccccCCCCC-----CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          273 VEVVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       273 ~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ..+...+    +..|...+++  +..+.++....     ...+.++..-...+.++++++++++|+++++++++      
T Consensus       241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il------  314 (341)
T PRK12439        241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI------  314 (341)
T ss_pred             cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence            8766544    2333333332  23333332110     01123455667889999999999999999999998      


Q ss_pred             CCCCccHHHHHHHHH
Q 018213          342 GLSDEDFSAVIEALK  356 (359)
Q Consensus       342 g~~~~d~~~~~~~~~  356 (359)
                       +++.+...+++.+-
T Consensus       315 -~~~~~~~~~~~~l~  328 (341)
T PRK12439        315 -NHGSTVEQAYRGLI  328 (341)
T ss_pred             -hCCCCHHHHHHHHh
Confidence             35556666665543

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=99.81  E-value=4.7e-19  Score=140.39  Aligned_cols=121  Identities=40%  Similarity=0.646  Sum_probs=112.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccc-cccCCCCCCcchhHHHHHHHH
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRL  313 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~  313 (359)
                      |.+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.|++++.+.+. +.++++.++|+++.+.||+.+
T Consensus         1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l   80 (122)
T PF14833_consen    1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL   80 (122)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence            5789999999999999999999999999999999999999999999999999998885 888999999999999999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018213          314 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL  355 (359)
Q Consensus       314 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~  355 (359)
                      +.+++++.|+|+|+.+.+.++++.+.++|+|++|+++++++|
T Consensus        81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~  122 (122)
T PF14833_consen   81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL  122 (122)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence            999999999999999999999999999999999999999986

...

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.80  E-value=8.2e-18  Score=158.14  Aligned_cols=180  Identities=16%  Similarity=0.230  Sum_probs=144.2

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ..++|+||| +|.||..+|+.|...|++|.+||++..             .+.++++++||+||+|+|. ..+..++   
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~-~~~~~~~---  159 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPI-HLTEEVI---  159 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcH-HHHHHHH---
Confidence            448899998 999999999999999999999998531             2566788899999999984 4677777   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCC
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~lg~  226 (359)
                      +++.+ ++++++|+|+++.+......+.+.+.   ..|+ .||++|++.....+..++++++ +++.++.+.++++.+|.
T Consensus       160 ~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~  235 (374)
T PRK11199        160 ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA  235 (374)
T ss_pred             HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence            66767 89999999999988876666665542   2588 5999998776666666666666 66788999999999999


Q ss_pred             CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213          227 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  274 (359)
Q Consensus       227 ~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~  274 (359)
                      +++++++.++...+++++..   .++.+++++..+++ .+.+.+.+.+
T Consensus       236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~  279 (374)
T PRK11199        236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA  279 (374)
T ss_pred             EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            99999999989999988843   55566677777766 6777766544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=2.6e-18  Score=156.70  Aligned_cols=189  Identities=15%  Similarity=0.187  Sum_probs=143.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------C-----------------CCccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------L-----------------GAKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+.+.+       .                 ++..+.++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            56999999999999999999999999999999887665431       1                 13446678888999


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEE-EeccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCc
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ  202 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~  202 (359)
                      ||+|++|+|...+++..++  .++.+.+++++++ +|+|+..+..   +.+.+..    .|++|+ .|+.+       ++
T Consensus        82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~  148 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK  148 (288)
T ss_pred             CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence            9999999998888776653  4566678888866 6888777754   4444432    255555 45433       35


Q ss_pred             eEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213          203 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  278 (359)
Q Consensus       203 ~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~  278 (359)
                      ++.++++   +++.++++.++++.+|+.++++++ +|      ++.|-+..   ..++|++.+.++.-.++++++..+..
T Consensus       149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~  219 (288)
T PRK09260        149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRL  219 (288)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            7778887   899999999999999999999998 76      44454444   34679998888765789999998876


Q ss_pred             cccc
Q 018213          279 GAIS  282 (359)
Q Consensus       279 ~~~~  282 (359)
                      +.+.
T Consensus       220 g~g~  223 (288)
T PRK09260        220 GLNF  223 (288)
T ss_pred             CCCC
Confidence            5443

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.80  E-value=1.5e-17  Score=150.57  Aligned_cols=192  Identities=15%  Similarity=0.309  Sum_probs=142.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+|+|||+|.||..+|..|.+.|+  +|++||+++++.+.+.+.|+. ...+.+++. ++|+||+|+| +..+..++   
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~---   75 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL---   75 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence            479999999999999999999886  789999998877776666653 345677765 5999999997 66777888   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCC----cc----ccCCceEEEec---CCHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KP----AEDGQLIFLAA---GDKSLYNT  216 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~---g~~~~~~~  216 (359)
                      .++.+ ++++++|+++++......+.+.+.   .+..|++ +|+.|.+    ..    ...+..+++++   .+++.++.
T Consensus        76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~  151 (275)
T PRK08507         76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER  151 (275)
T ss_pred             HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence            77777 889999999888766554444333   2345777 6987653    11    12455666665   36778899


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +.++++.+|.+++++++.++...++++++.. +.+..++.+++   . .+.+.+.+.++..
T Consensus       152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lp-h~~a~~l~~~~---~-~~~~~~~~~~~~~  207 (275)
T PRK08507        152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLP-HIISFALANTV---L-KEEDERNIFDLAG  207 (275)
T ss_pred             HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHH-HHHHHHHHHHH---H-hcCChHHHHhhcc
Confidence            9999999999999999999999999998874 45555555555   1 3556666555544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=1.5e-17  Score=151.93  Aligned_cols=196  Identities=12%  Similarity=0.136  Sum_probs=145.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C---------CCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDiv  131 (359)
                      ++|+|||+|.||..+|..++..|++|.+||++++..+...+           .         .+....++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            67999999999999999999999999999999875443211           1         235567888999999999


Q ss_pred             EEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--
Q 018213          132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--  209 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  209 (359)
                      +.++|...+++..+|  +++.+.++++++|- +++. .....++.+.+... -+++..+.+.++...   +++-++.+  
T Consensus        88 iEavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~~---pLVEVv~g~~  159 (321)
T PRK07066         88 QESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYLL---PLVEVLGGER  159 (321)
T ss_pred             EECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCCc-ccEEEEecCCccccC---ceEEEeCCCC
Confidence            999999999998885  67777888888554 3333 44455677766432 244443333333222   34445544  


Q ss_pred             -CHHHHHHHHHHHHHhCCCeEEeC-c-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213          210 -DKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  284 (359)
Q Consensus       210 -~~~~~~~v~~ll~~lg~~~~~~g-~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~  284 (359)
                       +++.++.+.++++.+|+.++.+. + +|      .+.|-+...   .+.|++.+.++...++++++.++..+.+..|
T Consensus       160 T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~~a---~~~EA~~lv~eGvas~edID~a~~~g~g~r~  228 (321)
T PRK07066        160 TAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLLEA---LWREALHLVNEGVATTGEIDDAIRFGAGIRW  228 (321)
T ss_pred             CCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence             79999999999999999998884 5 66      455554443   4679999999988999999999998766543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.79  E-value=3.9e-17  Score=156.40  Aligned_cols=196  Identities=20%  Similarity=0.297  Sum_probs=149.5

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |+|+||| +|.||.++|+.|...|++|++|+|+++..... .+.|+....+..+.+.++|+|++|+| +..+..++   +
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~   76 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K   76 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence            5799997 89999999999999999999999988765333 34477667788888999999999998 56778888   7


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHHHHHHhC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG  225 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll~~lg  225 (359)
                      ++.+.++++++++|+++......+.+.+.+. .+..|++ +|++|+......+..++++++   +++.++.+.++|+.+|
T Consensus        77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G  155 (437)
T PRK08655         77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG  155 (437)
T ss_pred             HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence            8888899999999999988888777777653 4677887 699887655566677666654   5788899999999999


Q ss_pred             CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213          226 KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  276 (359)
Q Consensus       226 ~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~  276 (359)
                      .+++.+++..+...+ ...+.+.+....++..+   +.+.|++.+....+.
T Consensus       156 ~~v~~~~~e~HD~~~-a~vs~lph~~a~al~~~---l~~~g~~~~~~~~~a  202 (437)
T PRK08655        156 ARVIVTSPEEHDRIM-SVVQGLTHFAYISIAST---LKRLGVDIKESRKFA  202 (437)
T ss_pred             CEEEECCHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHcCCCHHHHHhhc
Confidence            999888876544444 33344444443333333   266788877765443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.79  E-value=6.2e-18  Score=164.51  Aligned_cols=186  Identities=19%  Similarity=0.309  Sum_probs=147.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|||||+|.||..||..++..|++|++||++++..+..           .+.|             +..+.++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            679999999999999999999999999999999876652           3334             456677766 469


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEE-EeccCCChHHHHHHHHHHHh----cCCeeec-CCCCCCCccccCC
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG  201 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~  201 (359)
                      ||+||.++|++.+++..++  .++...+++++++ .|+|+.++.   .+.+.+..    .|++|++ +|++         
T Consensus        87 aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------  152 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------  152 (507)
T ss_pred             CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------
Confidence            9999999999999999885  4455556788888 488887775   45555543    2777777 5555         


Q ss_pred             ceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       202 ~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +++.++++   +++.++++.++++.+|+.++++++ +|      ++.|.+..   ..+.|++.++++.+++++++++++.
T Consensus       153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~  223 (507)
T PRK08268        153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR  223 (507)
T ss_pred             eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45667765   899999999999999999999998 67      45554443   3678999999999999999999997


Q ss_pred             hccc
Q 018213          278 QGAI  281 (359)
Q Consensus       278 ~~~~  281 (359)
                      .+.+
T Consensus       224 ~~~G  227 (507)
T PRK08268        224 EAAG  227 (507)
T ss_pred             hcCC
Confidence            6544

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=2.7e-17  Score=152.67  Aligned_cols=273  Identities=12%  Similarity=0.052  Sum_probs=194.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCC-------CcEEEEcCCccc-----hhHHHhC--------------CCccCCCHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDE  123 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g-------~~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~~~  123 (359)
                      ..++|+|||.|++|+++|..|...|       ++|.+|.|+++.     .+.+.+.              ++...+++++
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            4478999999999999999999887       899999998752     3444322              2344678889


Q ss_pred             HhhcCCEEEEeeCChhHHHHHhcccccccc--cCCCCCEEEeccCCChH-------HHHHHHHHHHhcCCeeecCCCCCC
Q 018213          124 VAASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGS  194 (359)
Q Consensus       124 ~~~~aDivi~~~p~~~~~~~~~~~~~~~~~--~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~  194 (359)
                      +++++|+|++++| +..++.++   +++.+  .++++.++|+++-|-..       ..+.+.+.+ ...+.++..|.+..
T Consensus        90 av~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-~~~~~~LsGPs~A~  164 (365)
T PTZ00345         90 AVEDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL-GIPCCALSGANVAN  164 (365)
T ss_pred             HHhcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh-CCCeEEEECCCHHH
Confidence            9999999999997 88899998   77777  67778889988666321       233444444 23566778898888


Q ss_pred             CccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc-c--ChHHHHHHH--------------HHHHHHHHHHHHHH
Q 018213          195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLV--------------VNMIMGSMMATFSE  257 (359)
Q Consensus       195 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~-~--~~~~~~kl~--------------~n~~~~~~~~~~~E  257 (359)
                      +........+++.+.+.+..+.++++|+.-.++++...| .  ..+.++|-+              .|.-.+.+..++.|
T Consensus       165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E  244 (365)
T PTZ00345        165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE  244 (365)
T ss_pred             HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            777777777777888999999999999888888877766 3  334555533              35666677899999


Q ss_pred             HHHHHHHcC--CCHHHHHHHHhhc----cccchhhhhc--ccccccCC--CC--C---C---cchhHHHHHHHHHHHHHH
Q 018213          258 GLLHSEKVG--LDPNVLVEVVSQG----AISAPMYSLK--GPSMIESL--YP--T---A---FPLKHQQKDLRLALGLAE  319 (359)
Q Consensus       258 a~~l~~~~G--i~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~--~---~---~~~~~~~kd~~~~~~~a~  319 (359)
                      +..++++.|  .+++++..+...+    +.+|  .+++  +..+.++.  ..  .   .   ..+.++..-...+.++++
T Consensus       245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~  322 (365)
T PTZ00345        245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLE  322 (365)
T ss_pred             HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHH
Confidence            999999997  4888888765544    2222  2222  33333321  10  0   0   112234555788899999


Q ss_pred             hcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213          320 SVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       320 ~~g~--~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      ++++  ++|+.+++++++.       ++.+...+++.+.
T Consensus       323 ~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~  354 (365)
T PTZ00345        323 SHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLS  354 (365)
T ss_pred             HcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence            9999  8999999999983       4445555555543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.78  E-value=2.1e-17  Score=152.19  Aligned_cols=256  Identities=18%  Similarity=0.177  Sum_probs=171.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      |+|+|||+|.||..+|..|++.|++|++++| +++.+.+.+.|..             ..++.++..+.+|+|++|+| +
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk-~   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK-A   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec-c
Confidence            5799999999999999999999999999999 6666666654432             13455666688999999996 6


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEecC----C
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAG----D  210 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g----~  210 (359)
                      .+++.++   +.+.+.+.++.+||.+.+|- ...+.+.+.+...    ++.++++...++......+...+.++.    .
T Consensus        79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~  154 (305)
T PRK12921         79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR  154 (305)
T ss_pred             cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence            7888888   77777778888888887764 3344565555432    233344443332222111222233332    2


Q ss_pred             HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 018213          211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP  269 (359)
Q Consensus       211 ~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~~  269 (359)
                      .+..+.+..+|...|..+....+.....|.|++.|...+.                     +..++.|...++++.|++.
T Consensus       155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~  234 (305)
T PRK12921        155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL  234 (305)
T ss_pred             CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4566678888888888877778888899999998876544                     3457889999999999863


Q ss_pred             --HHHHHHHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          270 --NVLVEVVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       270 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                        +.+.+.+......   .....++|.++-...+ ..++..   .+.++++++++|+++|.++.++++++...
T Consensus       235 ~~~~~~~~~~~~~~~---~~~~~sSm~~D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~~~~~~  301 (305)
T PRK12921        235 RDDVVEEIVKIFAGA---PGDMKTSMLRDMEKGRPLEIDHL---QGVLLRRARAHGIPTPILDTVYALLKAYE  301 (305)
T ss_pred             ChhHHHHHHHHHhcc---CCCCCcHHHHHHHcCCcccHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence              3443433321000   0011223332211111 234544   67899999999999999999999997764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.78  E-value=9.7e-18  Score=162.66  Aligned_cols=187  Identities=18%  Similarity=0.201  Sum_probs=144.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA  126 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~  126 (359)
                      -++|+|||+|.||..||..++..|++|++||++++..+..           .+.|             +..+.++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3679999999999999999999999999999998876532           2223             345667766 46


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHh----cCCeeec-CCCCCCCccccC
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED  200 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~  200 (359)
                      +||+||.|+|++.+++..+|  .++...+++++++. |+|+.++.   .+.+.+..    .|++|++ +|++        
T Consensus        84 ~aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------  150 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------  150 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC--------
Confidence            99999999999999998875  44555667777766 55554443   45555432    3677777 5554        


Q ss_pred             CceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213          201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  276 (359)
Q Consensus       201 ~~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~  276 (359)
                       +++.+++|   +++.++.+.++++.+|+.++++++ +|      .+.|-+..   ..+.|++.++++.+++++++++++
T Consensus       151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al  220 (503)
T TIGR02279       151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG------FIVNRVAR---PYYAEALRALEEQVAAPAVLDAAL  220 (503)
T ss_pred             -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC------cHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHH
Confidence             36777888   899999999999999999999998 66      24444443   467899999999999999999999


Q ss_pred             hhccc
Q 018213          277 SQGAI  281 (359)
Q Consensus       277 ~~~~~  281 (359)
                      +.+.+
T Consensus       221 ~~~~G  225 (503)
T TIGR02279       221 RDGAG  225 (503)
T ss_pred             HhcCC
Confidence            87544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=3.6e-17  Score=147.99  Aligned_cols=205  Identities=20%  Similarity=0.249  Sum_probs=159.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  131 (359)
                      ++|||||+|.||..+|..++..|++|+++|.++.+++.+..                   .| .+.+++.+++ +.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence            88999999999999999999999999999999887765542                   12 3445566554 599999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCee-----e-cCCCC--
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASF-----L-EAPVS--  192 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~-----~-~~~~~--  192 (359)
                      ++|+|.+-         .+....   +.+.+.|++|.++|--|+..|.+++.+...+.+.  |+.+     + .+|--  
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~  165 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL  165 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence            99999652         223333   6677889999999999999999999999887764  3332     1 13321  


Q ss_pred             -CCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018213          193 -GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV  271 (359)
Q Consensus       193 -~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~  271 (359)
                       |.....-....-++.|.++...+.+..+.+.+-..++.+.+...+++.|+..|.+....+++.+|...++++.|++..+
T Consensus       166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe  245 (436)
T COG0677         166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE  245 (436)
T ss_pred             CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence             1111111122234444577888888899999877788888999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 018213          272 LVEVVSQGA  280 (359)
Q Consensus       272 ~~~~~~~~~  280 (359)
                      +.++.+.-+
T Consensus       246 vIeaAnt~P  254 (436)
T COG0677         246 VIEAANTKP  254 (436)
T ss_pred             HHHHhccCC
Confidence            999988653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.77  E-value=2.7e-17  Score=147.95  Aligned_cols=251  Identities=14%  Similarity=0.175  Sum_probs=171.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++|+|||+|+||.++++.|.+.|+    +|+++||++++.+.+.+ .|+..+.+..+++++||+||+|+| |.++..++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence            579999999999999999998875    69999999888777664 677777788889999999999996 78999998 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~  223 (359)
                        +++.+.++++.++|++..|-..  +.+.+.+... ..++ -.|...  .....+...+..+.  +++..+.++.+|+.
T Consensus        81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~~-~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~  153 (272)
T PRK12491         81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDRK-LKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKEVLNIFNI  153 (272)
T ss_pred             --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCCC-CcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHHHHHHHHc
Confidence              7777778888999988666544  4566666322 1222 234322  22233444433332  56678899999999


Q ss_pred             hCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhcc--cc-cccCC
Q 018213          224 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLKG--PS-MIESL  297 (359)
Q Consensus       224 lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~--~~-~~~~~  297 (359)
                      +|... .+.+  .....++--+...+.+.++.++.++.   .+.|++.++..+++.++.. ...++....  +. +.+.-
T Consensus       154 ~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~---v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V  229 (272)
T PRK12491        154 FGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAA---VLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV  229 (272)
T ss_pred             CCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            99864 4544  22233332233455555555555554   8899999999999987643 222332211  11 22223


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      ..|+.+...       .++..++.|+..-+.+++.+.++++.+.+
T Consensus       230 ~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~  267 (272)
T PRK12491        230 CSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS  267 (272)
T ss_pred             CCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            345543333       35678889999999999999998887653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.77  E-value=2.6e-17  Score=151.53  Aligned_cols=256  Identities=21%  Similarity=0.216  Sum_probs=168.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-----------cCCCHHHHhhcCCEEEEeeCChhH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      |+|+|||+|.||..+|..|...|++|++++|+++..+.+.+.|..           ...+.+++ +.+|+|++++| +.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence            579999999999999999999999999999987777766665552           23455555 88999999996 678


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC----eeecCCCCCCCc--cccCCceEEEecC---CH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSKK--PAEDGQLIFLAAG---DK  211 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~g---~~  211 (359)
                      +..++   +.+.+.+.+++.||.+.++.. ..+.+.+.+....+    .+..+...++..  ....+..  .++.   ..
T Consensus        79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~--~ig~~~~~~  152 (304)
T PRK06522         79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRL--KIGEPDGES  152 (304)
T ss_pred             HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCE--EEeCCCCCc
Confidence            88888   778777888888888877643 23345554433221    111111111111  1111222  2222   22


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH-
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP-  269 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~~-  269 (359)
                      +..+.+.++|+..+..+....+.....|.|++.|...+.                     +..++.|...++++.|+++ 
T Consensus       153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~  232 (304)
T PRK06522        153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS  232 (304)
T ss_pred             HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            346778888888888877777788899999998865543                     3457889999999998753 


Q ss_pred             -HHHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          270 -NVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       270 -~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                       +.+.+.+......   .....++|.++-... ...++..   .+.++++++++|+++|.++.++++++.....
T Consensus       233 ~~~~~~~~~~~~~~---~~~~~sSm~~D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~~  300 (304)
T PRK06522        233 VEEVREYVRQVIQK---TAANTSSMLQDLEAGRPTEIDAI---VGYVLRRGRKHGIPTPLNDALYGLLKAKESE  300 (304)
T ss_pred             hHHHHHHHHHHhhc---cCCCCchHHHHHHcCCCcccchh---ccHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence             4444444322100   001112333321111 1224444   6779999999999999999999999877544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.76  E-value=8.8e-17  Score=148.29  Aligned_cols=257  Identities=18%  Similarity=0.183  Sum_probs=170.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc--------------CCCHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--------------QPSPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------------~~~~~~~~~~aDivi~~  134 (359)
                      +..|+|+|||+|.||..+|..|++.|++|+++.|++.  +...+.|...              ..+. +....+|+|++|
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila   79 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG   79 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence            4558999999999999999999999999999999752  4444444221              1222 345679999999


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCcc--ccCCceEEE-e
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKP--AEDGQLIFL-A  207 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~--~~~~~~~~~-~  207 (359)
                      +| ..++..++   +.+.+.+.++..++...+|.. ..+.+.+.+...    ++.++++...++...  ...+...+- .
T Consensus        80 vK-~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~  154 (313)
T PRK06249         80 LK-TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH  154 (313)
T ss_pred             ec-CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence            95 66777777   667777788888888776643 344566665433    223333332222111  112232221 1


Q ss_pred             cC-C-----HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 018213          208 AG-D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLL  260 (359)
Q Consensus       208 ~g-~-----~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~  260 (359)
                      .+ +     .+..+.+..+|+..|..+....++....|.|++.|...+.                     +..++.|+..
T Consensus       155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~  234 (313)
T PRK06249        155 SGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQ  234 (313)
T ss_pred             CCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHH
Confidence            12 2     4666778889999999888888888899999998865543                     3457889999


Q ss_pred             HHHHcCCC--HHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018213          261 HSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK  336 (359)
Q Consensus       261 l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~  336 (359)
                      ++++.|++  .+.+.+.+...... +   ...++|.+ |...+  ..++..   .+.++++++++|+++|+++.++++++
T Consensus       235 va~a~Gi~~~~~~~~~~~~~~~~~-~---~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~Gi~~P~~~~l~~~l~  306 (313)
T PRK06249        235 GAAACGHTLPEGYADHMLAVTERM-P---DYRPSMYH-DFEEGRPLELEAI---YANPLAAARAAGCAMPRVEMLYQALE  306 (313)
T ss_pred             HHHhcCCCCChhHHHHHHHHhhcC-C---CCCChHHH-HHHCCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999986  23333333221111 0   11345554 22222  235555   78999999999999999999999988


Q ss_pred             HHHHC
Q 018213          337 VAKSH  341 (359)
Q Consensus       337 ~a~~~  341 (359)
                      ....+
T Consensus       307 ~~e~~  311 (313)
T PRK06249        307 FLDRR  311 (313)
T ss_pred             HHHhh
Confidence            77644

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.76  E-value=3.7e-17  Score=150.79  Aligned_cols=259  Identities=13%  Similarity=0.066  Sum_probs=181.3

Q ss_pred             eEEEEcCChhhHHHHHHHHHCC--------CcEEEEcCCc-----cchhHHHhC--------C------CccCCCHHHHh
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRTK-----SKCDPLISL--------G------AKYQPSPDEVA  125 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g--------~~V~~~d~~~-----~~~~~~~~~--------g------~~~~~~~~~~~  125 (359)
                      +|+|||.|++|+++|..|+.+|        ++|.+|.|++     +..+.+.+.        |      +...+++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999999988        9999999832     222222211        1      33457889999


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHH-------HHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      +++|+|++++| +..++.++   +++.+.++++..+|+++-|-...       .+.+.+.+ ...+.++..|.+..+...
T Consensus        81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~  155 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK  155 (342)
T ss_pred             hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence            99999999998 78888888   77878888889999997764322       23444444 345667888888877776


Q ss_pred             cCCceEEEecCC----HHHHHHHHHHHHHhCCCeEEeCc-c--ChHHHHHHHH--------------HHHHHHHHHHHHH
Q 018213          199 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLVV--------------NMIMGSMMATFSE  257 (359)
Q Consensus       199 ~~~~~~~~~~g~----~~~~~~v~~ll~~lg~~~~~~g~-~--~~~~~~kl~~--------------n~~~~~~~~~~~E  257 (359)
                      .....+.+.+.+    .+..+.++++|+.--++++...| .  ..+.++|-+.              |.-.+.+..++.|
T Consensus       156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E  235 (342)
T TIGR03376       156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE  235 (342)
T ss_pred             CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            666677777777    78889999999877777777666 3  3345555332              6666778899999


Q ss_pred             HHHHHHHcCCCHH--HHHHHHhhc----cccchhhhhccccccc-CCCC-----C--CcchhHHHHHHHHHHHHHHhcCC
Q 018213          258 GLLHSEKVGLDPN--VLVEVVSQG----AISAPMYSLKGPSMIE-SLYP-----T--AFPLKHQQKDLRLALGLAESVSQ  323 (359)
Q Consensus       258 a~~l~~~~Gi~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~-~~~~-----~--~~~~~~~~kd~~~~~~~a~~~g~  323 (359)
                      +..+++..|-+++  ++..+...+    +..|..-..++..+.+ +...     .  ....-++..-...+.++++++++
T Consensus       236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i  315 (342)
T TIGR03376       236 MIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK  315 (342)
T ss_pred             HHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence            9999999998776  776554433    1222111112233333 2110     0  01122234446788999999999


Q ss_pred             C--chHHHHHHHHHH
Q 018213          324 S--TPIAAAANELYK  336 (359)
Q Consensus       324 ~--~p~~~~~~~~~~  336 (359)
                      +  +|+.+++++++.
T Consensus       316 ~~~~Pi~~~vy~il~  330 (342)
T TIGR03376       316 DDEFPLFEAVYQILY  330 (342)
T ss_pred             CcCCCHHHHHHHHHh
Confidence            9  999999999884

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.76  E-value=3.2e-17  Score=148.72  Aligned_cols=172  Identities=17%  Similarity=0.254  Sum_probs=132.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      |+|+|||+|.||..+|..|.+.|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+| +..+..++   ++
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~   76 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ   76 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence            579999999999999999999999999999998877777666642 23233356789999999998 66677777   77


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHHHHHH
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLYNTVA  218 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~~v~  218 (359)
                      +.+.++++.+++|+++.+....+.+.+.    ...|++ +|++|++..        ...+...+++.   ++++.++.+.
T Consensus        77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~  152 (279)
T PRK07417         77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE  152 (279)
T ss_pred             HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence            7788889999999988876554444332    235787 899987632        12344444443   3788899999


Q ss_pred             HHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH
Q 018213          219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM  251 (359)
Q Consensus       219 ~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~  251 (359)
                      ++++.+|.+++++++.++....+++++......
T Consensus       153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a  185 (279)
T PRK07417        153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS  185 (279)
T ss_pred             HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence            999999999999999998999999987664444

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.76  E-value=2.4e-16  Score=142.27  Aligned_cols=250  Identities=18%  Similarity=0.202  Sum_probs=163.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +|+|+|||+|+||..+++.|...|   ++|.+|+|++++.+.+.+. |+....+.++++.++|+|++|+| +..++.++ 
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~-   79 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL-   79 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH-
Confidence            378999999999999999999998   7899999998877777664 77777788888899999999996 77888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~  223 (359)
                        +++.+.+  +++||+++.+.+.  +.+.+.+. .+.+++. +|..  +.....+...+..+.  +++.++.++.+|+.
T Consensus        80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P~~--p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~  150 (267)
T PRK11880         80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMPNT--PALVGAGMTALTANALVSAEDRELVENLLSA  150 (267)
T ss_pred             --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecCCc--hHHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence              6665555  5688888776643  34555543 2334443 4422  122233333333443  78899999999999


Q ss_pred             hCCCeEEeCc-cChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhcc--cccc-cC
Q 018213          224 MGKSRFYLGD-VGNGAAMKLVVN--MIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLKG--PSMI-ES  296 (359)
Q Consensus       224 lg~~~~~~g~-~~~~~~~kl~~n--~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~--~~~~-~~  296 (359)
                      +|. ++.+.+ .......-+..+  .+...+   +..+...+.+.|+++++..+++..... ...+.....  +... ..
T Consensus       151 lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~---~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~  226 (267)
T PRK11880        151 FGK-VVWVDDEKQMDAVTAVSGSGPAYVFLF---IEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN  226 (267)
T ss_pred             CCe-EEEECChHhcchHHHHhcChHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence            997 445553 322222223222  222222   223333357799999999988886532 111221111  1111 11


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          297 LYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       297 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      -..|+.+       +...++..++.|++..+.+++.+.++++.+.+
T Consensus       227 v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~  265 (267)
T PRK11880        227 VTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG  265 (267)
T ss_pred             CCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence            1123222       34456778889999999999999999998764

>PLN02256 arogenate dehydrogenase

Probab=99.75  E-value=2.3e-16  Score=143.74  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=129.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      .++++|+|||+|.||..+++.|.+.|++|++|+++.. .+...+.|+....+.++++ .++|+|++|+| +..+..++  
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl--  109 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL--  109 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH--
Confidence            6778999999999999999999999999999999863 2334445776677888876 47999999997 67888888  


Q ss_pred             cccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--ccCCceEEEec-------CCHHHHHH
Q 018213          148 KHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYNT  216 (359)
Q Consensus       148 ~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~-------g~~~~~~~  216 (359)
                       +++ ...++++++|+|+++++....+.+.+.+.. +..|+. +|++|.+..  ...+...+...       .+++..+.
T Consensus       110 -~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  187 (304)
T PLN02256        110 -RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER  187 (304)
T ss_pred             -HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence             666 566889999999999887777777766643 556776 899988743  22333333332       26778899


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHH
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMK  241 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~k  241 (359)
                      +.++++.+|.+++.+....+...+.
T Consensus       188 l~~l~~~lGa~v~~~~~eeHD~~vA  212 (304)
T PLN02256        188 FLDIFEEEGCRMVEMSCEEHDRYAA  212 (304)
T ss_pred             HHHHHHHCCCEEEEeCHHHHhHHHH
Confidence            9999999999999988866555544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.75  E-value=1.9e-16  Score=139.65  Aligned_cols=249  Identities=19%  Similarity=0.222  Sum_probs=169.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++|||||+|+||.+|+..|.+.|    .+|++.+|++++.+.+ .+.|+...++.++++.++|+|++++ +|.....++ 
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl-   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL-   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence            78999999999999999999999    5899999999887644 4456666777889999999999999 799999998 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  223 (359)
                        .++.+ ..++++||.+..|-+  .+.+.+.+.  +..++- .|...  .....+...+..+  .+++..+.+..+|+.
T Consensus        80 --~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~  150 (266)
T COG0345          80 --SKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAFVEALLSA  150 (266)
T ss_pred             --HHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHHHHHHHHh
Confidence              77766 678999997765544  345777765  333433 34322  1223333333332  277888899999999


Q ss_pred             hCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhccc--cc-ccCC
Q 018213          224 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGP--SM-IESL  297 (359)
Q Consensus       224 lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~--~~-~~~~  297 (359)
                      +|..+ .+++.....+..+.  ...+.+.++.++.++   +.+.|++.++..+++.++. +..-++.....  .. .+.-
T Consensus       151 ~G~v~-~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V  226 (266)
T COG0345         151 VGKVV-EVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV  226 (266)
T ss_pred             cCCeE-EechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            99855 45443322222222  234444444333333   5899999999999998864 33344444333  12 2233


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      .+|+.+...+       ++..++.|+..-+.+++.+.++++.+.|
T Consensus       227 tSPGGtTiag-------l~~le~~g~~~~v~~av~aa~~r~~el~  264 (266)
T COG0345         227 TSPGGTTIAG-------LRVLEEDGFRGAVIEAVEAAYKRSEELG  264 (266)
T ss_pred             cCCCchHHHH-------HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence            4566554444       4455688899999999999988887764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.75  E-value=1.4e-16  Score=142.96  Aligned_cols=244  Identities=16%  Similarity=0.163  Sum_probs=159.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCc---EEEEcCCccchhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      |+|||||+|+||+++++.|...|++   +.+|+|++++.+.+.+.  ++..+.+.+++++++|+|++|+| +.....++ 
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL-   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            4799999999999999999998864   57899998877776654  46677789999999999999997 78888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~  226 (359)
                        +++  .+++++++|+++  .....+.+.+.+......+..+|+....  ...+. ..++.++    +.++++|+.+|.
T Consensus        79 --~~l--~~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~  145 (258)
T PRK06476         79 --RAL--RFRPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT  145 (258)
T ss_pred             --HHh--ccCCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence              554  256888999865  3445556777665443445556653222  12222 2334432    589999999998


Q ss_pred             CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc-chh-hhhc--ccc-cccCCCCCC
Q 018213          227 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS-APM-YSLK--GPS-MIESLYPTA  301 (359)
Q Consensus       227 ~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~-s~~-~~~~--~~~-~~~~~~~~~  301 (359)
                      .++ +.+.........+.. +.+.++..+.++...+++.|+++++..+++...... ..+ ....  .+. +.+.-..|+
T Consensus       146 ~~~-~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg  223 (258)
T PRK06476        146 AVE-CDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG  223 (258)
T ss_pred             cEE-ECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence            776 443221122211222 333344567788889999999999999998865322 222 1111  111 122223454


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                      .+...       .++..++.|+.-.+.+++.+.++++.
T Consensus       224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~  254 (258)
T PRK06476        224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN  254 (258)
T ss_pred             chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence            43333       35567778887777777777666653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.74  E-value=7.9e-17  Score=146.18  Aligned_cols=193  Identities=17%  Similarity=0.201  Sum_probs=140.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-----------HHhCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|||||+|.||..+|..++..|++|++||++++..+.           +.+.|             +..++++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            47999999999999999999999999999999887654           22233             2256677 45789


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccC-CCCCEEEeccCCChHHHHHHHHHHHhc--CCeeec-CCCCCCCccccCCce
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQL  203 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~~~~~~~  203 (359)
                      ||+||.|+|++.+++..+|  ..+...+ ++++++++.+++.+....+.....+++  +++|++ ++++...      .+
T Consensus        85 ~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------El  156 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------EL  156 (286)
T ss_pred             CCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EE
Confidence            9999999999999998885  4444445 789999988777776654432222233  555555 2332221      22


Q ss_pred             EEEecCCHHHHHHHHHHHH-HhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          204 IFLAAGDKSLYNTVAPLLD-IMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       204 ~~~~~g~~~~~~~v~~ll~-~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      +....++++.++++.+++. .+|+.++.+++ +|      ++.|-+..   ..++|++.+.++...++++++.++..+.+
T Consensus       157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nRi~~---~~~~Ea~~ll~eGv~~~~dID~~~~~g~G  227 (286)
T PRK07819        157 VPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNALLV---PYLLSAIRMVESGFATAEDIDKAMVLGCA  227 (286)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            2233458999999999988 59999999988 76      44444433   44679999988866789999999876654


Q ss_pred             c
Q 018213          282 S  282 (359)
Q Consensus       282 ~  282 (359)
                      .
T Consensus       228 ~  228 (286)
T PRK07819        228 H  228 (286)
T ss_pred             C
Confidence            4

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.73  E-value=1.2e-15  Score=136.63  Aligned_cols=169  Identities=21%  Similarity=0.320  Sum_probs=130.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCcc--CCCH-HHHhhcCCEEEEeeCChhHHHHHh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY--QPSP-DEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~--~~~~-~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++|+|+|+|.||+.+|+.|+..|+.|.+++++...  .+...+.|+..  ..+. .+.+.++|+||+++| -..+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH
Confidence            378999999999999999999999988777665543  23333334422  1222 566778999999998 77899999


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCC--CccccCCceEEEecC---CHHHHHHHHH
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGS--KKPAEDGQLIFLAAG---DKSLYNTVAP  219 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~g---~~~~~~~v~~  219 (359)
                         +++.+.+++|++|+|+++.+....+++.+.+.+.. .|++ ||++|+  ......+..++++..   +.+.++.+.+
T Consensus        82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~  157 (279)
T COG0287          82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR  157 (279)
T ss_pred             ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence               88888999999999999999888888877776555 8887 999998  344455666666665   4567889999


Q ss_pred             HHHHhCCCeEEeCccChHHHHHHHH
Q 018213          220 LLDIMGKSRFYLGDVGNGAAMKLVV  244 (359)
Q Consensus       220 ll~~lg~~~~~~g~~~~~~~~kl~~  244 (359)
                      +++.+|.+++.+....+...+..++
T Consensus       158 ~~~~~ga~~v~~~~eeHD~~~a~vs  182 (279)
T COG0287         158 LWEALGARLVEMDAEEHDRVMAAVS  182 (279)
T ss_pred             HHHHcCCEEEEcChHHHhHHHHHHH
Confidence            9999999998888876555554443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.73  E-value=2.5e-16  Score=144.23  Aligned_cols=188  Identities=18%  Similarity=0.247  Sum_probs=135.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-----------HHhCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+.           +.+.|             ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            67999999999999999999999999999999876542           22222             2233344 56799


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCc
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ  202 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~  202 (359)
                      ||+||+|+|.+.+.+..++  .++.+.++++++|+ |+|+..+.   .+.+.+..    .+++++++|...        .
T Consensus        84 aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~--------~  150 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM--------K  150 (295)
T ss_pred             CCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------c
Confidence            9999999998899888774  55666788888887 66666544   34444432    244555555432        3


Q ss_pred             eEEEec---CCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213          203 LIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  278 (359)
Q Consensus       203 ~~~~~~---g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~  278 (359)
                      .+.++.   ++++.++.+.++++.+|+.++++++ +|      .+.|-+.   ...++|++.+.++...++++++..+..
T Consensus       151 lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g------~i~nri~---~~~~~ea~~~~~~gv~~~~~iD~~~~~  221 (295)
T PLN02545        151 LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG------FIVNRIL---MPMINEAFYALYTGVASKEDIDTGMKL  221 (295)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc------HHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            344554   3899999999999999999999888 55      2333333   334679999988877889999988776


Q ss_pred             cccc
Q 018213          279 GAIS  282 (359)
Q Consensus       279 ~~~~  282 (359)
                      +.+.
T Consensus       222 g~g~  225 (295)
T PLN02545        222 GTNH  225 (295)
T ss_pred             ccCC
Confidence            5443

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.72  E-value=7.7e-16  Score=144.40  Aligned_cols=196  Identities=19%  Similarity=0.253  Sum_probs=140.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc----cCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++|+|||+|.||.++|+.|.+.|++|.+|+++++........+..    ...++++++++||+||+|+| +..+..++  
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl--   77 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL--   77 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence            369999999999999999999999999999887654433333322    23467788899999999998 56788888  


Q ss_pred             cccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc--------cccCCceEEEec---CCHHHH
Q 018213          148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAA---GDKSLY  214 (359)
Q Consensus       148 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~---g~~~~~  214 (359)
                       +++.+ .++++.+|.|+++.+....+.+.+.+ ..+..|++ +|+.|++.        ....+..++++.   .+++.+
T Consensus        78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~  155 (359)
T PRK06545         78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV  155 (359)
T ss_pred             -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence             77766 47899999999999887666665543 34668888 89888752        223445455555   378889


Q ss_pred             HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213          215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  279 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~  279 (359)
                      +.+.++++.+|..++.+++..+.....+++..-- .+    ++++  +...+.+.+....+...+
T Consensus       156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh-~i----a~al--~~~~~~~~~~~~~la~~g  213 (359)
T PRK06545        156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPH-IL----ASSL--AARLAGEHPLALRLAAGG  213 (359)
T ss_pred             HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHH-HH----HHHH--HHhhccCchHHHhhhccc
Confidence            9999999999999988887665666655544322 22    1222  445555555555555543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.72  E-value=7.2e-16  Score=142.29  Aligned_cols=193  Identities=15%  Similarity=0.146  Sum_probs=136.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----C--------------CccCCCHHHHhhcCCEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDivi  132 (359)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+.+.+.     +              +....+.++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            679999999999999999999999999999988766554331     1              234567778889999999


Q ss_pred             EeeCChhHH-HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--
Q 018213          133 AMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--  209 (359)
Q Consensus       133 ~~~p~~~~~-~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  209 (359)
                      +|+|...+. ..++   .++...++++++|+..+.+.+  ...+.+.+.. ..+++....+.++..   ...+.++.+  
T Consensus        85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~---~~l~~i~~g~~  155 (311)
T PRK06130         85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV---IPLVEVVRGDK  155 (311)
T ss_pred             EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc---CceEEEeCCCC
Confidence            999866544 4455   555555666766654444433  3366666532 223444333332221   123344444  


Q ss_pred             -CHHHHHHHHHHHHHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213          210 -DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  282 (359)
Q Consensus       210 -~~~~~~~v~~ll~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~  282 (359)
                       +++.++.+.++++.+|..++.++.  +|.     +++|.+    ...++|++.++++.|++++++++++..+.+.
T Consensus       156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~  222 (311)
T PRK06130        156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGI  222 (311)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence             689999999999999999998874  552     444443    3568899999999999999999999876554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.71  E-value=3e-15  Score=137.78  Aligned_cols=173  Identities=17%  Similarity=0.321  Sum_probs=129.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +..++|+|||+|.||..++..|...|+  +|++|||+++..+.+.+.|.  ....+.++.++++|+||+|+| +..+..+
T Consensus         4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-~~~~~~v   82 (307)
T PRK07502          4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-VGASGAV   82 (307)
T ss_pred             cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-HHHHHHH
Confidence            344789999999999999999999885  89999999887776666664  234577788899999999998 5566777


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-c-------cCCceEEEe---cCCHH
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLA---AGDKS  212 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~-------~~~~~~~~~---~g~~~  212 (359)
                      +   +++.+.++++.+|+++++......+.+.+.+ ..++++++ +|+.|++.. .       ..+..++++   +++++
T Consensus        83 ~---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~  158 (307)
T PRK07502         83 A---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPA  158 (307)
T ss_pred             H---HHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHH
Confidence            7   6677778899999999888766665555544 24667887 688875531 1       123333343   34788


Q ss_pred             HHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          213 LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       213 ~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                      .++.+.++++.+|.+++.+++..+.....++...
T Consensus       159 ~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l  192 (307)
T PRK07502        159 AVARLTAFWRALGARVEEMDPEHHDLVLAITSHL  192 (307)
T ss_pred             HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence            8999999999999999888876656555555443

>PRK07680 late competence protein ComER; Validated

Probab=99.71  E-value=1.1e-15  Score=138.43  Aligned_cols=195  Identities=16%  Similarity=0.241  Sum_probs=135.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      |+|+|||+|+||.++++.|.+.|+    +|.+|+|++++.+.+.+.  ++....+..+++.++|+|++++| +..+..++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            479999999999999999999883    799999998777666553  56677788888999999999995 88899998


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  223 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  223 (359)
                         +++.+.++++++||+++.+.  ..+.+.+.+....+++++.    .+.....+...+..+  .+.+..+.++++|+.
T Consensus        80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~  150 (273)
T PRK07680         80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLFSN  150 (273)
T ss_pred             ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence               77777788889999998654  4556666654333344431    112233455544444  366778899999999


Q ss_pred             hCCCeEEeCccChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213          224 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  279 (359)
Q Consensus       224 lg~~~~~~g~~~~~~~~kl--~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~  279 (359)
                      +|. ++.+.+........+  +...+...++.++.++.  .++.|++.++..+++...
T Consensus       151 ~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~  205 (273)
T PRK07680        151 IST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM  205 (273)
T ss_pred             CCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence            995 455554211111222  23345555555455543  244899999999988765

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=1.1e-15  Score=139.78  Aligned_cols=188  Identities=16%  Similarity=0.233  Sum_probs=133.0

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-------------CccCCCHHHHhh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA  126 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~  126 (359)
                      -++|+|||+|.||..+|..|+..|++|++||++++..+...+           .|             +...++++ .++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   82 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA   82 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence            367999999999999999999999999999999876654321           12             34455665 468


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHhc----CCeeec-CCCCCCCccccC
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAED  200 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~~  200 (359)
                      +||+||+|+|...+.+..++  +++.+.++++++++ |+|+..+.   .+.+.+...    ++++++ +++..       
T Consensus        83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~-------  150 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMK-------  150 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCc-------
Confidence            99999999998777666553  56777788999888 44444432   566655321    445555 22221       


Q ss_pred             CceEEE--ecCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          201 GQLIFL--AAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       201 ~~~~~~--~~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      . .-++  .+++++.++.+.++++.+|+.++++++ +|     +++++.+    ...+.|++.+..+.-.++++++.++.
T Consensus       151 ~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg-----~i~nRl~----~~~~~ea~~~~~~g~~~~~~iD~~~~  220 (292)
T PRK07530        151 L-VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPA-----FIVNRIL----LPMINEAIYTLYEGVGSVEAIDTAMK  220 (292)
T ss_pred             e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC-----hHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            1 1122  246899999999999999999999888 44     3444443    33456998888885558999999887


Q ss_pred             hccc
Q 018213          278 QGAI  281 (359)
Q Consensus       278 ~~~~  281 (359)
                      .+.+
T Consensus       221 ~g~g  224 (292)
T PRK07530        221 LGAN  224 (292)
T ss_pred             hCCC
Confidence            5543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.70  E-value=7e-16  Score=141.54  Aligned_cols=259  Identities=15%  Similarity=0.072  Sum_probs=168.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccC-----------CCHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |||+|+|+|.||+.+|..|++.|++|++++|+.++.+.+.+. |+...           ....+.....|+|++|+ +..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence            789999999999999999999999999999987666666543 33211           01112235789999999 788


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEec-CCHHHH
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAA-GDKSLY  214 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~  214 (359)
                      ++...+   +.+.+.+.+++.++-+-+|-.. .+.+.+.+...    ++.++++...++-.....+...+..+ .+.+..
T Consensus        82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~  157 (305)
T PRK05708         82 DAEPAV---ASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA  157 (305)
T ss_pred             hHHHHH---HHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence            999998   8888889899988888776543 33455555432    22223222222111111222112233 233455


Q ss_pred             HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHH
Q 018213          215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS------------------MMATFSEGLLHSEKVGLDP--NVLVE  274 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~------------------~~~~~~Ea~~l~~~~Gi~~--~~~~~  274 (359)
                      +.+.++|...|..+....++....|.|++.|...+.                  +..++.|...++++.|++.  +.+.+
T Consensus       158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~  237 (305)
T PRK05708        158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE  237 (305)
T ss_pred             HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence            777888888888777777888899999998875543                  3456789999999999752  33333


Q ss_pred             HHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          275 VVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       275 ~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      .+......   .....++|.++-... ...++..   .+.++++++++|+|+|.+++++++++....+
T Consensus       238 ~~~~~~~~---~~~~~sSM~qD~~~gR~tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~  299 (305)
T PRK05708        238 EVQRVIQA---TAANYSSMYQDVRAGRRTEISYL---LGYACRAADRHGLPLPRLQHLQQRLVAHLRA  299 (305)
T ss_pred             HHHHHHHh---ccCCCcHHHHHHHcCCceeehhh---hhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence            33211000   001123343321111 1234555   6889999999999999999999888877754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.70  E-value=1.4e-15  Score=138.91  Aligned_cols=258  Identities=20%  Similarity=0.230  Sum_probs=176.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc------------CCCHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------------QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------------~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |||.|+|+|.||+.++..|++.|++|+++.|++. .+.+.+.|...            .....+.+..+|+||+++ ++.
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence            6899999999999999999999999999988764 67777655322            112234456899999999 899


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccC--CceEE--EecCCH
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAED--GQLIF--LAAGDK  211 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~--~~~~~--~~~g~~  211 (359)
                      ++..++   +.+.+.+++.+.|+-.-+|....+ .+.+.....    |+...++-..+.......  +...+  ..++.+
T Consensus        79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            999999   899999999998888877766655 666666544    222222211111111111  22221  112244


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCC--C
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGL--D  268 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi--~  268 (359)
                      +..+.+.++|+..+..+.+..++....|.|++.|..++.                     +...+.|...++.+.|+  +
T Consensus       155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~  234 (307)
T COG1893         155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP  234 (307)
T ss_pred             HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence            778888899999999998888888899999999987774                     34577899999999994  4


Q ss_pred             HHHHHHHHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      .+.+..+........   ....++|.++-...+ ..++..   .+.+++.++++|+++|++++++++++.....
T Consensus       235 ~~~~~~v~~~~~~~~---~~~~sSM~qDl~~gr~tEid~i---~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~  302 (307)
T COG1893         235 EEVVERVLAVIRATD---AENYSSMLQDLEKGRPTEIDAI---NGAVVRLAKKHGLATPVNDTLYALLKAKEAE  302 (307)
T ss_pred             HHHHHHHHHHHHhcc---cccCchHHHHHHcCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            533333333211010   011223333222111 235555   6889999999999999999999999988765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.70  E-value=1.4e-15  Score=138.61  Aligned_cols=194  Identities=13%  Similarity=0.134  Sum_probs=136.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------------CCCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~~~~~~~  126 (359)
                      ++|+|||+|.||..+|..++..|++|++||++++..+...+                         .++..+++++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            67999999999999999999999999999998765443321                         12345678888889


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  206 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (359)
                      +||+||+|+|...+.+..++  +++.+.++++++|++.+++.+.  ..+.+.+. ..-+++..+.+.+..   ..+.+.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p~~---~~~lvev  155 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANEIW---KNNTAEI  155 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCCCC---cCCeEEE
Confidence            99999999997766655442  6666778888888544444332  24555443 233566644333322   2244444


Q ss_pred             ec---CCHHHHHHHHHHHHHhCCCeEEeC-c-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          207 AA---GDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       207 ~~---g~~~~~~~v~~ll~~lg~~~~~~g-~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      +.   .+++.++.+.++++.+|+.++.+. + +|      .+.|-+..   ..++|++.+.++...++++++.++..+.+
T Consensus       156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg------fi~nRi~~---~~~~ea~~l~~~g~a~~~~iD~a~~~~~g  226 (287)
T PRK08293        156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG------YILNSLLV---PFLSAALALWAKGVADPETIDKTWMIATG  226 (287)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC------HhHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence            43   488999999999999999988875 4 65      33343333   34679999988877899999999876654


Q ss_pred             c
Q 018213          282 S  282 (359)
Q Consensus       282 ~  282 (359)
                      .
T Consensus       227 ~  227 (287)
T PRK08293        227 A  227 (287)
T ss_pred             C
Confidence            3

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.70  E-value=9.1e-15  Score=130.16  Aligned_cols=157  Identities=14%  Similarity=0.145  Sum_probs=119.3

Q ss_pred             CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCccch-----hHHHhCCCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~  126 (359)
                      |||.|.|+|+-                    |..+|++|.+.||+|++|||++++.     +.+.+.|+..+++..++++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa   80 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK   80 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence            56788888875                    8899999999999999999986543     3477779999999999999


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHH---HHhcCCeeec-CCCCCCCccccCCc
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH---IKATGASFLE-APVSGSKKPAEDGQ  202 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~---l~~~~~~~~~-~~~~~~~~~~~~~~  202 (359)
                      ++|+||+|+|.+.+++.++   ..+++.+++|+++||+|+.+|.....+.+.   +++..+.+.. ||  +..|......
T Consensus        81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP--~~vP~~~~~~  155 (341)
T TIGR01724        81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHP--AAVPGTPQHG  155 (341)
T ss_pred             CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCC--CCCCCCCCCc
Confidence            9999999999999999998   678888999999999999999877666655   3333333332 22  1122222222


Q ss_pred             eEEEecC--------CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          203 LIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       203 ~~~~~~g--------~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      ..++.+.        ++|..+++.++.+..++.++.+..
T Consensus       156 ~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa  194 (341)
T TIGR01724       156 HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA  194 (341)
T ss_pred             eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence            2222221        789999999999999999887754

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.68  E-value=1.4e-15  Score=138.92  Aligned_cols=192  Identities=17%  Similarity=0.163  Sum_probs=132.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--------------CC-------------CccCCCHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV  124 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~~~~~  124 (359)
                      ++|+|||+|.||..+|..++..|++|++||++++..+...+              .|             +...++. +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            57999999999999999999999999999999876543211              11             1233444 56


Q ss_pred             hhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeec-CCCCCCCcccc
Q 018213          125 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE  199 (359)
Q Consensus       125 ~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~  199 (359)
                      +++||+||+|+|...+.+..++  +++.+.+++++++++.+++.  ....+.+.+...    +++|+. +++.+... ..
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~  157 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV  157 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence            7899999999997766555542  55666778888888555543  444566666432    444444 33332211 11


Q ss_pred             CCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213          200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  279 (359)
Q Consensus       200 ~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~  279 (359)
                      .+..     .+++.++.+.++++.+|+.++++++.+.....++..+        .+.|++.+.++.-.++++++.++..+
T Consensus       158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~~  224 (291)
T PRK06035        158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKLA  224 (291)
T ss_pred             CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence            1111     2799999999999999999999988543555554443        34588888877446899999998765


Q ss_pred             ccc
Q 018213          280 AIS  282 (359)
Q Consensus       280 ~~~  282 (359)
                      .+.
T Consensus       225 ~g~  227 (291)
T PRK06035        225 FGF  227 (291)
T ss_pred             CCC
Confidence            443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.68  E-value=5.3e-15  Score=134.53  Aligned_cols=192  Identities=17%  Similarity=0.188  Sum_probs=133.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh-----------HHHhCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----------PLISLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..+|..++..|++|++||++++..+           .+.+.|             +...++.++ +++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence            5799999999999999999999999999999987763           222333             233556554 789


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+|++|+|...+++..++  +++.+.++++++++..+++.+.  ..+.+.+... -+++....+.+.+..   +.+.++
T Consensus        83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~P~~~~---~~vev~  154 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFNPVPVM---KLVEII  154 (282)
T ss_pred             CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccCCcccC---ccEEEe
Confidence            9999999988777774442  6677778889888544343332  3666666432 245543222222111   111223


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          208 ---AGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       208 ---~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                         +.+++..+.+.++++.+|+.++.+++ +|      .+.|-+.   ...++|+..+.++.-.++++++..+..+.+
T Consensus       155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~g  223 (282)
T PRK05808        155 RGLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGCN  223 (282)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence               24899999999999999999999987 55      3444333   344679999988866789999999876543

>PLN02712 arogenate dehydrogenase

Probab=99.66  E-value=7e-15  Score=147.09  Aligned_cols=174  Identities=17%  Similarity=0.211  Sum_probs=125.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ..+|+|||||+|.||..+|+.|.++|++|.+|||+... +...+.|+....++++++. .+|+|++|+| +..+..++  
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi--  442 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL--  442 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH--
Confidence            67799999999999999999999999999999998543 4445567777778888776 5899999998 67888888  


Q ss_pred             cccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccc-c-CCceE----EEecCCHH---HHHH
Q 018213          148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPA-E-DGQLI----FLAAGDKS---LYNT  216 (359)
Q Consensus       148 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~-~-~~~~~----~~~~g~~~---~~~~  216 (359)
                       +++.. .++++++++|+++++....+.+.+.+ ..+..|+ .+|++|.+... . .....    .+++++.+   ..+.
T Consensus       443 -~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l-~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~  520 (667)
T PLN02712        443 -KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHL-PQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS  520 (667)
T ss_pred             -HHHHHhcCCCCcEEEECCCccHHHHHHHHHhc-cCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence             55544 58899999999999865555555554 3466788 59999987541 0 01110    12334433   3455


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHHHHHHHHHH
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG  249 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~  249 (359)
                      +.++++.+|.+++.+....+...+. ..|.+.+
T Consensus       521 l~~l~~~lGa~vv~ms~eeHD~~~A-~vShLpH  552 (667)
T PLN02712        521 FLDIFAREGCRMVEMSCAEHDWHAA-GSQFITH  552 (667)
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHH-HHHHHHH
Confidence            6689999999999888866453333 3344444

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.65  E-value=2.7e-14  Score=128.11  Aligned_cols=242  Identities=17%  Similarity=0.173  Sum_probs=153.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      .|||+|||+|+||.++++.|.+.|    .++++++|++++.      +.....+..++++++|+||+|+| +.+++.++ 
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl-   74 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL-   74 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            478999999999999999999877    2489999876542      33445677888889999999995 89999999 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeecCCCCCCCccccCCceEEEecC---CHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLL  221 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll  221 (359)
                        .++.+.++++ .+|....+-.  .+.+.+.+...  .+++++  ..  +.....+... ++..   +++..+.++.+|
T Consensus        75 --~~i~~~l~~~-~iIS~~aGi~--~~~l~~~~~~~~~vvr~mP--n~--p~~~g~g~t~-i~~~~~~~~~~~~~v~~l~  144 (260)
T PTZ00431         75 --LEIKPYLGSK-LLISICGGLN--LKTLEEMVGVEAKIVRVMP--NT--PSLVGQGSLV-FCANNNVDSTDKKKVIDIF  144 (260)
T ss_pred             --HHHHhhccCC-EEEEEeCCcc--HHHHHHHcCCCCeEEEECC--Cc--hhHhcceeEE-EEeCCCCCHHHHHHHHHHH
Confidence              7777666654 4554444333  23344444321  122322  11  1122233333 3332   567788999999


Q ss_pred             HHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhcc--c-cccc
Q 018213          222 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--P-SMIE  295 (359)
Q Consensus       222 ~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~--~-~~~~  295 (359)
                      +.+|...+. .+  ......+--....+.+.++.++.++.   .+.|++.++..+++.++. +...++....  + .+.+
T Consensus       145 ~~~G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~---v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~  220 (260)
T PTZ00431        145 SACGIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAG---VKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKD  220 (260)
T ss_pred             HhCCcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            999986644 44  22222232233455555555555554   889999999999998763 2233332221  2 1222


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          296 SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       296 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      .-..|+.+...       .++..++.|+..-+.+++.+..+++.+.
T Consensus       221 ~v~spgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l  259 (260)
T PTZ00431        221 DVCSPGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSM  259 (260)
T ss_pred             hCCCCChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence            33345544333       3556788899999999999888887764

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.63  E-value=1.7e-14  Score=128.55  Aligned_cols=198  Identities=17%  Similarity=0.189  Sum_probs=131.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC---c-EEEEcCC-ccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~-V~~~d~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ++.+||+|||+|+||.+++..+...|.   + +++++|+ +++.+.+.+ .++..+.+.+++++++|+|++++| +...+
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~   80 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHE   80 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHH
Confidence            345889999999999999999988763   3 6778874 556666554 367667788899999999999997 66778


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe--cCCHHHHHHHHHH
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPL  220 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~l  220 (359)
                      .++   +++.+.++ +.+||+++.+-...  .+.+.+.........+|.+..+.  ..+...+..  ..+++..+.++++
T Consensus        81 ~v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~~v--~~g~~~~~~~~~~~~~~~~~v~~l  152 (245)
T PRK07634         81 ELL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAAEI--GKSISLYTMGQSVNETHKETLQLI  152 (245)
T ss_pred             HHH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHHHH--hcCCeEEeeCCCCCHHHHHHHHHH
Confidence            887   66655554 67889887665443  46555543221223356544322  223222222  3478889999999


Q ss_pred             HHHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213          221 LDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  279 (359)
Q Consensus       221 l~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~  279 (359)
                      |+.+|..++ +.+  .....+.--....+.+.++.++.++   +.+.|++.++..+++...
T Consensus       153 f~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~  209 (245)
T PRK07634        153 LKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM  209 (245)
T ss_pred             HHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence            999999775 444  2222222223333444454444444   588999999999988865

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.62  E-value=9.8e-15  Score=122.66  Aligned_cols=171  Identities=20%  Similarity=0.229  Sum_probs=117.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhC-CC-ccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISL-GA-KYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~-g~-~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +|+++|+|+|+||.++|++|...||+|++-+|+.++ .+...+. +. ....+.+++.+.+|||++++| -+....++  
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP-~~a~~~v~--   77 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP-FEAIPDVL--   77 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc-HHHHHhHH--
Confidence            478999999999999999999999999998665443 3332221 22 224478899999999999998 56777777  


Q ss_pred             cccccccCCCCCEEEeccCCC-----h----------HHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEec
Q 018213          148 KHGAASGMGPGKGYVDVSTVD-----G----------DTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAA  208 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~-----~----------~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (359)
                       +++...+. |+++||++...     +          ...+.+.+.+...    ..+-+.+..+...........+++++
T Consensus        78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag  155 (211)
T COG2085          78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG  155 (211)
T ss_pred             -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence             77777665 89999997741     1          1233444444332    11222233333222222445667788


Q ss_pred             CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          209 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       209 g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                      .|.++.+.+.++.+.+|+.++.+|+...+..+.-+...
T Consensus       156 DD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l  193 (211)
T COG2085         156 DDAEAKAVVAELAEDIGFRPLDAGPLENARILEPGTPL  193 (211)
T ss_pred             CcHHHHHHHHHHHHhcCcceeecccccccccccccchH
Confidence            89999999999999999999999986545554444333

>PLN02712 arogenate dehydrogenase

Probab=99.62  E-value=5.5e-14  Score=140.69  Aligned_cols=169  Identities=17%  Similarity=0.208  Sum_probs=125.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      .+.++|||||+|.||+.+|+.|.++|++|++|+|+... +...+.|+..+.+.++++ .++|+|++|+| +..+..++  
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl--  125 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL--  125 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH--
Confidence            55689999999999999999999999999999998443 444556777777888866 46999999998 67889988  


Q ss_pred             ccccc-ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--ccCCceEEEe----cCCH---HHHHH
Q 018213          148 KHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYNT  216 (359)
Q Consensus       148 ~~~~~-~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~----~g~~---~~~~~  216 (359)
                       +++. +.++++++|+|+++.+....+.+.+.+. .+..|+. +|++|++..  ...+...++.    +.+.   +..+.
T Consensus       126 -~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  203 (667)
T PLN02712        126 -KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS  203 (667)
T ss_pred             -HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence             6654 5688999999999888766666666553 3556776 999998732  1222223333    2222   34567


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHHHH
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMKLV  243 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~kl~  243 (359)
                      +.++++.+|.+++.+....+......+
T Consensus       204 l~~l~~~lGa~v~~ms~eeHD~~~A~v  230 (667)
T PLN02712        204 FLEVFEREGCKMVEMSCTEHDKYAAES  230 (667)
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHH
Confidence            779999999999988876645544443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.60  E-value=8.3e-14  Score=126.08  Aligned_cols=247  Identities=13%  Similarity=0.165  Sum_probs=151.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCcc-chhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~-~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++|+|||+|+||.++++.|...|    ++|.+|+|+.+ +.+.+...  ++....+..+++.++|+||+|+| +..+..+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence            67999999999999999999988    78999998653 23333332  23445678888899999999997 8888888


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHH
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLL  221 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll  221 (359)
                      +   +++.+.++++.+||++..|-..  +.|.+.+..  ..++- .|...  .....+...+..+.  +++..+.++.+|
T Consensus        81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MPN~~--~~~g~g~t~~~~~~~~~~~~~~~v~~l~  151 (277)
T PRK06928         81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIPSLT--SAVGVGTSLVAHAETVNEANKSRLEETL  151 (277)
T ss_pred             H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeCccH--HHHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence            8   7777777888899988776444  356666532  12222 33322  22233444333332  567788999999


Q ss_pred             HHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcccc-chhhhh--cccc-cc
Q 018213          222 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVSQGAIS-APMYSL--KGPS-MI  294 (359)
Q Consensus       222 ~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~~~~~~-s~~~~~--~~~~-~~  294 (359)
                      +.+|.... +.+  .....++--....+.+.++.++.++   +.+. |++.++..+++.++... ..+...  ..+. +.
T Consensus       152 ~~~G~~~~-v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~  227 (277)
T PRK06928        152 SHFSHVMT-IREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTI  227 (277)
T ss_pred             HhCCCEEE-EchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence            99998654 333  2222222222334444444444444   3676 79999999999876432 222221  1122 22


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213          295 ESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  340 (359)
Q Consensus       295 ~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  340 (359)
                      +.-..|+.+...+       ++..++ |++.-+.+++.+..++..+
T Consensus       228 ~~v~spgGtT~~g-------l~~le~-~~~~~~~~~~~~a~~r~~~  265 (277)
T PRK06928        228 ERVATKGGITAEG-------AEVIQA-QLPQFFDELLDRTQKKYAS  265 (277)
T ss_pred             HhCCCCChHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            2233455443333       233443 6666666666666665544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.59  E-value=1.3e-13  Score=141.56  Aligned_cols=183  Identities=17%  Similarity=0.255  Sum_probs=136.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++|+|||+|.||.++++.|...|  ++|++||+++++.+...+.|+.  ...+.++++.++|+|++|+| +..+..++  
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl--   80 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL--   80 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH--
Confidence            67999999999999999999998  4899999998877766666654  34567788899999999997 66888888  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLYN  215 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~  215 (359)
                       +++.+.++++.+|+++++.+....+.+.+.+....++++. +|++|++..        ...+..++++.   .+++..+
T Consensus        81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~  159 (735)
T PRK14806         81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA  159 (735)
T ss_pred             -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence             7777778889999999998877777777776544567765 898876532        11233334443   3677889


Q ss_pred             HHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHH
Q 018213          216 TVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL  259 (359)
Q Consensus       216 ~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~  259 (359)
                      .+.++++.+|.+++.+++..+.....+ .+.+-+.+...+.|++
T Consensus       160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~-~~~~ph~~~~~l~~~l  202 (735)
T PRK14806        160 RVDRLWRAVGADVLHMDVAHHDEVLAA-TSHLPHLLAFSLVDQL  202 (735)
T ss_pred             HHHHHHHHcCCEEEEcCHHHHhHHHHH-hcchHHHHHHHHHHHH
Confidence            999999999998888877554444433 3444444445555654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.59  E-value=3.9e-14  Score=123.89  Aligned_cols=169  Identities=17%  Similarity=0.208  Sum_probs=117.1

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------CCc---cCCCHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GAK---YQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~~---~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |||+||| +|+||++++..|.+.|++|.+++|++++.+.+.+.        |+.   ...+..+.++++|+||+++| +.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence            5799997 89999999999999999999999998776654431        211   12366778899999999997 77


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHH---------------HHHHHHHHHhcCCeeecC-C-----CCCCCccc
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-P-----VSGSKKPA  198 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-~-----~~~~~~~~  198 (359)
                      ....++   +++...+. +++||+++.+...+               .+.+.+.+.. +.+++.+ +     +... ...
T Consensus        80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~  153 (219)
T TIGR01915        80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD  153 (219)
T ss_pred             HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence            788887   55544454 58999997775431               1345455432 1233331 1     2222 122


Q ss_pred             cCCceEEEecCCHHHHHHHHHHHHHh-CCCeEEeCccChHHHHHHHHHHH
Q 018213          199 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMI  247 (359)
Q Consensus       199 ~~~~~~~~~~g~~~~~~~v~~ll~~l-g~~~~~~g~~~~~~~~kl~~n~~  247 (359)
                      ..+..+++++.++++.+.+.+|++.+ |+.+++.|+...+..+.-....+
T Consensus       154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~  203 (219)
T TIGR01915       154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLL  203 (219)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHH
Confidence            23455667777888899999999999 99999999876565555444333

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.58  E-value=2e-13  Score=126.90  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHH-CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ..++|+|||+ |.||+.+|+.|++ .|++|++||+..+           ...++++.+++||+|++|+| ...+..++  
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l--   68 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI--   68 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence            3478999999 9999999999986 4899999998521           12367788899999999998 77888888  


Q ss_pred             ccccccc---CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-ccCCceEEEecC-CHHHHHHHHHHH
Q 018213          148 KHGAASG---MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAG-DKSLYNTVAPLL  221 (359)
Q Consensus       148 ~~~~~~~---l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~v~~ll  221 (359)
                       +++.+.   ++++++|.|+++.+....+.+.    ..+..|++ ||++|++.. ...+...+++.+ ..+..+.+.+++
T Consensus        69 -~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~  143 (370)
T PRK08818         69 -EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLC  143 (370)
T ss_pred             -HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHH
Confidence             666654   7999999999999865554442    33456887 999998743 345666666654 445578899999


Q ss_pred             HHhCCCeEEeCccChHHHHHHHH
Q 018213          222 DIMGKSRFYLGDVGNGAAMKLVV  244 (359)
Q Consensus       222 ~~lg~~~~~~g~~~~~~~~kl~~  244 (359)
                      +.+|.+++.+....+...+..++
T Consensus       144 ~~~Ga~v~~~~aeeHD~~~A~vS  166 (370)
T PRK08818        144 SALQAECVYATPEHHDRVMALVQ  166 (370)
T ss_pred             HHcCCEEEEcCHHHHHHHHHHHH
Confidence            99999999988877666666664

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.58  E-value=1.7e-13  Score=124.95  Aligned_cols=195  Identities=16%  Similarity=0.174  Sum_probs=129.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++++|||||+|+||.++|+.|..+|++|++++++..+. +...+.|+... +.++++++||+|++++|.. ....++  
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~--   90 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVY--   90 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHH--
Confidence            778999999999999999999999999999888764433 33344577655 8899999999999999854 447776  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc-----cccCCceEEE-ecCC--HHHHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-----PAEDGQLIFL-AAGD--KSLYNTVA  218 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~-~~g~--~~~~~~v~  218 (359)
                      ++++.+.+++|++|+ .+.|.....  + ......++.++- +|......     ....|...++ +..+  .++.+.+.
T Consensus        91 ~~~I~~~Lk~g~iL~-~a~G~~i~~--~-~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~  166 (330)
T PRK05479         91 EEEIEPNLKEGAALA-FAHGFNIHF--G-QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL  166 (330)
T ss_pred             HHHHHhcCCCCCEEE-ECCCCChhh--c-eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence            466788899999884 444433222  1 111123333333 34322220     1233444444 4444  78889999


Q ss_pred             HHHHHhCCCeE-----EeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213          219 PLLDIMGKSRF-----YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  273 (359)
Q Consensus       219 ~ll~~lg~~~~-----~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~  273 (359)
                      .++..+|....     ...+ ......-.  ...+.+.+..++..++.++.+.|.+|+..+
T Consensus       167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay  225 (330)
T PRK05479        167 AYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY  225 (330)
T ss_pred             HHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999998753     2222 11111111  345566667777788888899999987765

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.55  E-value=3.1e-13  Score=121.68  Aligned_cols=193  Identities=15%  Similarity=0.182  Sum_probs=138.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hCC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|+|||.|.||..||..++..|++|.++|++++..+...           +.|             +....++. .+++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~   82 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD   82 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence            7899999999999999999998899999999965433211           111             22333443 5789


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+||.++|...++++-+|  +++-...++++++-..+++-+.  .++.+.++ +.-++++.+.|.+++..   +++-++
T Consensus        83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~i--t~ia~~~~-rper~iG~HFfNP~~~m---~LVEvI  154 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSI--TELAEALK-RPERFIGLHFFNPVPLM---PLVEVI  154 (307)
T ss_pred             CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCH--HHHHHHhC-CchhEEEEeccCCCCcc---eeEEEe
Confidence            9999999999999988764  6666677888888744443333  45666663 32245554444444332   344455


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213          208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  282 (359)
Q Consensus       208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~  282 (359)
                      .|   +++.++++.++.+.+|+.++...+ +|      .+.|-+...   .+.|++.+..+...++++++.+++.+.+.
T Consensus       155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil~~---~~~eA~~l~~eGva~~e~ID~~~~~~~G~  224 (307)
T COG1250         155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLLAA---LLNEAIRLLEEGVATPEEIDAAMRQGLGL  224 (307)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhccCC
Confidence            54   789999999999999988766677 66      555554443   36699999999889999999999986554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.51  E-value=3.3e-13  Score=123.86  Aligned_cols=181  Identities=18%  Similarity=0.181  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccch-------hH-----------HHhCC-------------CccCCC--HHHHhhcC
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DP-----------LISLG-------------AKYQPS--PDEVAASC  128 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~-------~~-----------~~~~g-------------~~~~~~--~~~~~~~a  128 (359)
                      ||..||..++..|++|.+||++++..       +.           +.+.|             +....+  ..+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            79999999999999999999998531       11           11111             233333  56788999


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCceE
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI  204 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~  204 (359)
                      |+||.++|.+.+++..+|  .++.+.+++++++.  |+.+......+.+.+..    .|++|+++|..-        +++
T Consensus        81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~lv  148 (314)
T PRK08269         81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PLV  148 (314)
T ss_pred             CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccC--------ceE
Confidence            999999999999999885  55777788999885  55566666678777743    255666655322        233


Q ss_pred             EEec---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          205 FLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       205 ~~~~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      -+++   ++++.++++.++++.+|+.++++++.+ +       +.+...+...++|++.++++.+++++++++++..+.+
T Consensus       149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G  220 (314)
T PRK08269        149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG  220 (314)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            3333   489999999999999999999999844 2       2344555667889999999999999999999987655


Q ss_pred             c
Q 018213          282 S  282 (359)
Q Consensus       282 ~  282 (359)
                      .
T Consensus       221 ~  221 (314)
T PRK08269        221 L  221 (314)
T ss_pred             C
Confidence            4

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.49  E-value=1.6e-12  Score=116.94  Aligned_cols=196  Identities=17%  Similarity=0.153  Sum_probs=121.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +++++|||||+|+||+++|++|..+|++|+++++.....+.....|+... ++++++++||+|++++|+ +++++++  +
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~--~   89 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVY--K   89 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHH--H
Confidence            78899999999999999999999999999999876444444445577654 899999999999999997 5668888  5


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC-CCCcc----ccCCceEEEec---CCHHHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS-GSKKP----AEDGQLIFLAA---GDKSLYNTVAP  219 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~---g~~~~~~~v~~  219 (359)
                      +++++.|++|++++-. .|.-+....   .....++.++- +|-- |....    ...|...++.-   .+..+.+....
T Consensus        90 ~eil~~MK~GaiL~f~-hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala  165 (335)
T PRK13403         90 AEVEENLREGQMLLFS-HGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA  165 (335)
T ss_pred             HHHHhcCCCCCEEEEC-CCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence            6789999999977643 333222111   11123333322 2221 11110    11222222211   13446667777


Q ss_pred             HHHHhCCC---eEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213          220 LLDIMGKS---RFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLV  273 (359)
Q Consensus       220 ll~~lg~~---~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~  273 (359)
                      ....+|..   ++.+ ......-..+.  ...+...+..++.-.+..+.+.|.+|+..+
T Consensus       166 ~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay  223 (335)
T PRK13403        166 YAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY  223 (335)
T ss_pred             HHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            78888765   2222 11101111111  123455556666666677789999887655

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.49  E-value=8.5e-13  Score=133.89  Aligned_cols=191  Identities=15%  Similarity=0.113  Sum_probs=139.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..||..++..|++|+++|++++..+...           +.             .+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            6899999999999999999999999999999987644211           11             234455664 4689


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+||.++|...+++.-+|  .++-..+++++++...+++-++  ..+.+.+.. .-+++..+.+.+++..   +++-++
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv  464 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVI  464 (715)
T ss_pred             CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-CccEEEEecCCccccc---ceEEee
Confidence            9999999999999988774  6677778899888755554444  346666643 3345555555443322   334444


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      .+   +++.++.+..++..+|+.++.+.+ +|      ++.|-+...+   +.|++.+.++. .++++++.++..+.+
T Consensus       465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~~---~~ea~~lv~~G-a~~e~ID~a~~~~~G  532 (715)
T PRK11730        465 RGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFPY---FAGFSQLLRDG-ADFRQIDKVMEKQFG  532 (715)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHHH---HHHHHHHHHcC-CCHHHHHHHHHhhCC
Confidence            43   789999999999999999999987 66      5555554443   56888888764 999999999876543

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.48  E-value=2.1e-12  Score=118.13  Aligned_cols=195  Identities=15%  Similarity=0.123  Sum_probs=123.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC-ccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ++++|+|||+|+||.++|+.|..+|++|+++++. ++..+.+.+.|+... +..+++++||+|++++|...+...+.   
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---   77 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---   77 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---
Confidence            4688999999999999999999999998776554 344455556677654 68888999999999998443555554   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-----ccCCceEEE-ecC--CHHHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAP  219 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~-~~g--~~~~~~~v~~  219 (359)
                      +++.+.++++. +|..+.|-...  .+...+. .+..++- +|.......     ...+...++ +..  +.+..+.+..
T Consensus        78 ~ei~~~l~~g~-iVs~aaG~~i~--~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~  153 (314)
T TIGR00465        78 AEIQPLLKEGK-TLGFSHGFNIH--FVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA  153 (314)
T ss_pred             HHHHhhCCCCc-EEEEeCCccHh--hccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence            66777788775 67666665543  2333332 2333332 444322210     133443333 332  6777889999


Q ss_pred             HHHHhCCC-------eE--EeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213          220 LLDIMGKS-------RF--YLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  279 (359)
Q Consensus       220 ll~~lg~~-------~~--~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~  279 (359)
                      +++.+|..       .+  .+.+  .+...++    ......++..+.|++   .+.|++++..+..+.++
T Consensus       154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l----~Gs~pa~v~~~~eal---v~~G~~~e~A~~~~~~~  217 (314)
T TIGR00465       154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVL----CGGLTALIKAGFDTL---VEAGYQPELAYFETVHE  217 (314)
T ss_pred             HHHHcCCCccceeechhHhhhhHHhcCcchhH----HhHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence            99999987       21  1111  2211111    112222333444666   79999999999887654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.47  E-value=1.3e-12  Score=132.23  Aligned_cols=191  Identities=16%  Similarity=0.132  Sum_probs=138.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..||..++..|++|+++|++++..+...           +.             .+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            6899999999999999999999999999999987654321           11             233445554 4689


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+||.++|...+++.-+|  .++-+.+++++++...+++-++  ..+.+.+.. .-++++.+.+.++...   +++-++
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~-p~r~ig~Hff~P~~~~---~lvEvv  464 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVI  464 (714)
T ss_pred             CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-cccEEEEecCCCcccC---ceEeec
Confidence            9999999999999987664  6777788899888755444444  356666643 2345554444433322   344444


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      .+   +++.++.+.+++..+|+.++.+.+ +|      .+.|-+...+   +.|++.+.++ |.++++++.++..+.+
T Consensus       465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~~~---~~ea~~l~~e-G~~~~~ID~a~~~~~G  532 (714)
T TIGR02437       465 RGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFPY---FGGFSKLLRD-GADFVRIDKVMEKQFG  532 (714)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence            44   789999999999999999999987 66      5556554443   5699888865 5999999999876543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.47  E-value=1.3e-13  Score=116.43  Aligned_cols=152  Identities=14%  Similarity=0.223  Sum_probs=100.6

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C-------------CCccCCCHHHHhhcC
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC  128 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a  128 (359)
                      +|+|||+|.||..+|..++..|++|.+||++++..+...+           .             .+....+++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            5999999999999999999999999999999876443211           1             234567888887 99


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  208 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (359)
                      |+||.++|...+.+.-+|  +++.+.++++++|...+++.+..  .+.+.+... -++++.+.+.++..   .+++-++.
T Consensus        80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p-~R~ig~Hf~~P~~~---~~lVEvv~  151 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRP-ERFIGMHFFNPPHL---MPLVEVVP  151 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTG-GGEEEEEE-SSTTT-----EEEEEE
T ss_pred             heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcC-ceEEEEeccccccc---CceEEEeC
Confidence            999999999988887664  67777888999888665554443  455555322 23444333332221   23333443


Q ss_pred             C---CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          209 G---DKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       209 g---~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      +   +++.++.+..+++.+|+.++.+.+
T Consensus       152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  152 GPKTSPETVDRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence            3   789999999999999999987744

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.47  E-value=1.1e-13  Score=104.83  Aligned_cols=90  Identities=26%  Similarity=0.427  Sum_probs=75.7

Q ss_pred             eEEEEcCChhhHHHHHHHHHCC---CcEEE-EcCCccchhHHHhC-CCccCC-CHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLISL-GAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g---~~V~~-~d~~~~~~~~~~~~-g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ||||||+|+||.++++.|...|   ++|.+ ++|++++.+.+.+. ++.... +..|+++++|+|++|+| +.+..+++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence            6999999999999999999999   89995 49999988877554 555555 89999999999999996 88999998 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +++ ....+++++|+++.+
T Consensus        79 --~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 --SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             --HHH-HHHHTTSEEEEESTT
T ss_pred             --HHH-hhccCCCEEEEeCCC
Confidence              777 677899999988653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.47  E-value=1.7e-12  Score=116.20  Aligned_cols=166  Identities=19%  Similarity=0.292  Sum_probs=117.1

Q ss_pred             HHHHHHHCC--CcEEEEcCCccchhHHHhCCCccCC-CHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           86 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        86 ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      +|+.|++.|  ++|++||++++..+...+.|+.... +..+.+.++|+||+|+| ...+..++   +++.+.++++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~   76 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence            578899888  7899999998877776666764321 22577899999999998 77899999   88888999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeec-CCCCCCC--------ccccCCceEEEecC---CHHHHHHHHHHHHHhCCCeEE
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLE-APVSGSK--------KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      |+++.+....+.+.+.+. .+..|++ ||++|++        .....+..++++..   +.+.++.+.++++.+|.+++.
T Consensus        77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~  155 (258)
T PF02153_consen   77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE  155 (258)
T ss_dssp             E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred             EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            999999888878877765 6778887 9999983        33445777777754   467889999999999999988


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHH
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSE  257 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~E  257 (359)
                      +....+...+..++. +-+.+..++..
T Consensus       156 ~~~eeHD~~~A~vsh-lpH~~a~al~~  181 (258)
T PF02153_consen  156 MDAEEHDRIMAYVSH-LPHLLASALAN  181 (258)
T ss_dssp             --HHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            877665555555443 33444333333

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.46  E-value=1.5e-13  Score=113.67  Aligned_cols=136  Identities=17%  Similarity=0.262  Sum_probs=100.4

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC--------------CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      ||+|||.|++|.++|..|+.+|++|++|.|+++..+.+.+.+              +...++++++++++|+|++++| +
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence            699999999999999999999999999999987777666432              3356789999999999999998 7


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCC-h----HHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHH
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-G----DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS  212 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  212 (359)
                      ...+.++   +++.+.++++..+|.++.|- .    ...+.+.+.+....+.++..|.+..+........+.+.+.+.+
T Consensus        80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~  155 (157)
T PF01210_consen   80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE  155 (157)
T ss_dssp             GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred             HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence            7889998   88999999999999997764 1    2344555556555577888898877766666666666665554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.43  E-value=4.6e-12  Score=128.58  Aligned_cols=187  Identities=14%  Similarity=0.111  Sum_probs=135.7

Q ss_pred             CeEEEEcCChhhHHHHHHHH-HCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~  126 (359)
                      ++|+|||+|.||..||..++ ..|++|+++|++++..+...           +.             .+..++++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999998 88999999999876543321           11             23445566 4568


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  206 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (359)
                      +||+||.++|+..+++.-+|  .++-+.+++++++...+++-+.  ..+.+.+... -+++..+.+.++...   +++-+
T Consensus       389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~ig~Hff~P~~~~---~lVEv  460 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARP-EQVIGLHYFSPVEKM---PLVEV  460 (708)
T ss_pred             cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcc-cceEEEecCCccccC---ceEEE
Confidence            99999999999999987764  6677778899988855555444  3466665432 355555555433322   34444


Q ss_pred             ecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          207 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       207 ~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +.+   +++.++.+..++..+|+.++.+.+ +|      .+.|-+...   .++|++.++++ |+++++++.++.
T Consensus       461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~~---~~~EA~~lv~e-Gv~~~dID~a~~  525 (708)
T PRK11154        461 IPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRILAP---YINEAARLLLE-GEPIEHIDAALV  525 (708)
T ss_pred             ECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence            443   789999999999999999998877 66      455544443   35699888886 789999998876

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.43  E-value=2.9e-12  Score=130.10  Aligned_cols=187  Identities=15%  Similarity=0.120  Sum_probs=134.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||..||..++..|++|+++|++++..+...           +.             .+....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            6799999999999999999999999999999987644311           11             234455665 4689


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+||.++|+..+++.-+|  .++-+.+++++++...+++-+  ...+.+.+... -++++.+.+.++...   +++-++
T Consensus       415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~--i~~la~~~~~p-~r~ig~Hff~P~~~m---~LvEvv  486 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALP--IKDIAAVSSRP-EKVIGMHYFSPVDKM---QLLEII  486 (737)
T ss_pred             CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCC--HHHHHhhcCCc-cceEEEeccCCcccC---ceEEEe
Confidence            9999999999999987774  677778889988874444433  34566665432 245554444333222   334444


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      .+   +++.++.+..++..+|+.++.+++ +|      ++.|-+..   ..+.|++.+.++ |+++++++.++.
T Consensus       487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~~~~ID~a~~  550 (737)
T TIGR02441       487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVDPKKLDKLTT  550 (737)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            43   789999999999999999999988 66      45555444   346788888766 789999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.42  E-value=6.2e-12  Score=127.33  Aligned_cols=187  Identities=13%  Similarity=0.112  Sum_probs=133.8

Q ss_pred             CeEEEEcCChhhHHHHHHHH-HCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~  126 (359)
                      ++|+|||+|.||..||..++ ..|++|++||++++..+...           +.             .+...++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            68999999999999999998 58999999999986543211           11             234455664 568


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  206 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (359)
                      +||+||.++|...+++.-+|  .++-..+++++++...+++-+.  ..+.+.+... -+++..+.+.++...   +++-+
T Consensus       384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~~g~HffnP~~~~---~lVEv  455 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRP-ENVIGLHYFSPVEKM---PLVEV  455 (699)
T ss_pred             cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCc-ccEEEEecCCccccC---ceEEE
Confidence            99999999999999987664  6677778888888755444444  3566666432 245554444333221   34444


Q ss_pred             ecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          207 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       207 ~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +.+   +++.++.+..+++.+|+.++.+.+ +|      .+.|-+..   ..+.|++.+.++ |+++++++.++.
T Consensus       456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~---~~~~Ea~~l~~~-G~~~~dID~a~~  520 (699)
T TIGR02440       456 IPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRILA---PYMNEAARLLLE-GEPVEHIDKALV  520 (699)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHHH---HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            443   789999999999999999999977 65      44454444   346699888774 689999999885

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.41  E-value=4.3e-13  Score=126.99  Aligned_cols=104  Identities=15%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|||+|.||+.+|+++..+|++|+++++++.+.......|+... +++++++.+|+|++|+.    +++++  +
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI--~  324 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDII--T  324 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----ccccc--C
Confidence            77899999999999999999999999999999988766544444566543 78999999999999863    45677  5


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhc
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT  182 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~  182 (359)
                      .+.+..|++|++++|++++.   .+...+.++..
T Consensus       325 ~e~~~~MKpGAiLINvGr~d---~Ei~i~aL~~~  355 (476)
T PTZ00075        325 LEHMRRMKNNAIVGNIGHFD---NEIQVAELEAY  355 (476)
T ss_pred             HHHHhccCCCcEEEEcCCCc---hHHhHHHHHhc
Confidence            67788999999999999984   33344555543

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.41  E-value=1.3e-11  Score=112.85  Aligned_cols=245  Identities=18%  Similarity=0.166  Sum_probs=155.3

Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      .||..+|..|++.|++|++++|+ +..+.+.+.|+.              ..+++++ ....|+|+++++ ..++..++ 
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK-s~~~~~~l-   76 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVK-AYQTEEAA-   76 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEecc-chhHHHHH-
Confidence            37999999999999999999997 455566554431              1223344 568999999994 77889888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC----CeeecCCCCCCCccccCCceEEEecC---CHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP  219 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~  219 (359)
                        +.+.+.+.++++|+.+.+|-.. .+.+.+.+....    +.+.++...++......+...+.++.   ..+..+.+.+
T Consensus        77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~  153 (293)
T TIGR00745        77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAE  153 (293)
T ss_pred             --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHH
Confidence              7888888888999888776433 335555553321    22222222221111111111122332   2245667788


Q ss_pred             HHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC--HHHHHHHH
Q 018213          220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLD--PNVLVEVV  276 (359)
Q Consensus       220 ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~--~~~~~~~~  276 (359)
                      +|+..+..+....+.....|.|++.|...+.                     +..++.|+..++++.|++  .+.+.+.+
T Consensus       154 ~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~  233 (293)
T TIGR00745       154 LLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELV  233 (293)
T ss_pred             HHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            8888888888888888899999998864443                     345788999999999975  33344444


Q ss_pred             hhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          277 SQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       277 ~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                      .......+   ...++|.++ +..+  ..++..   .+.+++.++++|+++|.++.++++++...
T Consensus       234 ~~~~~~~~---~~~sSm~~D-~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~e  291 (293)
T TIGR00745       234 RAVIRMTA---ENTSSMLQD-LLRGRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALLKALE  291 (293)
T ss_pred             HHHHhcCC---CCCChHHHH-HHcCCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence            32210000   011233322 2111  124444   68899999999999999999999987654

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.38  E-value=1.4e-12  Score=110.51  Aligned_cols=118  Identities=21%  Similarity=0.266  Sum_probs=81.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  131 (359)
                      |||+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+.                    ......+.++.+.++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            789999999999999999999999999999999877765531                    124556778888999999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHH-HHHhcC-----CeeecCCCC
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATG-----ASFLEAPVS  192 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~-~l~~~~-----~~~~~~~~~  192 (359)
                      ++|+|.+.         .+..++   +.+.+.++++.++|.-|+.+|.+.+.+.. .+++.+     +.+...|-+
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr  153 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER  153 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred             EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence            99998653         355566   77778889999999999999999985554 444333     344456654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.38  E-value=1.5e-12  Score=109.10  Aligned_cols=196  Identities=13%  Similarity=0.139  Sum_probs=136.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C------------------CCccCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQP  119 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~~  119 (359)
                      ...+.|+|||.|.||+.||+..+..|++|+++|++.+.+.+..+           .                  .++...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            34467999999999999999999999999999998875543221           0                  123456


Q ss_pred             CHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeec-CCCCCC
Q 018213          120 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGS  194 (359)
Q Consensus       120 ~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~  194 (359)
                      +..+++.++|+||.++-.+..++.-+|  +++-...++.+++.  ++.+.....++...+++.    |++|+. .|++.-
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~--tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKL  164 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA--TNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKL  164 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe--ecccceeHHHHHhhccChhhhceeeccCCchhHHH
Confidence            778888899999998877777776554  55555566666665  233333334555555442    666665 444432


Q ss_pred             CccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213          195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  273 (359)
Q Consensus       195 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~  273 (359)
                      .....      -...+++.+..+..+-+.+|+.++.+.+ +|      .+.|-++-.   .+.|+.++.++...+.++++
T Consensus       165 vEVir------~~~TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNRlLiP---yl~ea~r~yerGdAskeDID  229 (298)
T KOG2304|consen  165 VEVIR------TDDTSDETFNALVDFGKAVGKTTVACKDTPG------FIVNRLLIP---YLMEAIRMYERGDASKEDID  229 (298)
T ss_pred             hhhhc------CCCCCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhHHHHH---HHHHHHHHHHhcCCcHhhHH
Confidence            21111      1123688999999999999999999988 77      443433222   24599999999999999999


Q ss_pred             HHHhhccccc
Q 018213          274 EVVSQGAISA  283 (359)
Q Consensus       274 ~~~~~~~~~s  283 (359)
                      ..+..++++.
T Consensus       230 taMklGagyP  239 (298)
T KOG2304|consen  230 TAMKLGAGYP  239 (298)
T ss_pred             HHHhccCCCC
Confidence            9999887663

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.35  E-value=7.6e-13  Score=104.20  Aligned_cols=112  Identities=25%  Similarity=0.369  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ...+||+|||+|++|..+++.|.+.|++|.. |+|+.+..+.+... +...+.+++|+++++|++++++|+ ..+..+. 
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va-   85 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA-   85 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH-
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH-
Confidence            3458999999999999999999999999875 57776555554432 334455778899999999999985 5888887 


Q ss_pred             cccccccc--CCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          147 GKHGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       147 ~~~~~~~~--l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                        +++...  .++|++|+.||-....   ++.+.+++.|....
T Consensus        86 --~~La~~~~~~~g~iVvHtSGa~~~---~vL~p~~~~Ga~~~  123 (127)
T PF10727_consen   86 --EQLAQYGAWRPGQIVVHTSGALGS---DVLAPARERGAIVA  123 (127)
T ss_dssp             --HHHHCC--S-TT-EEEES-SS--G---GGGHHHHHTT-EEE
T ss_pred             --HHHHHhccCCCCcEEEECCCCChH---HhhhhHHHCCCeEE
Confidence              777665  7899999999776654   34455556665443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.34  E-value=6.8e-11  Score=104.94  Aligned_cols=159  Identities=17%  Similarity=0.168  Sum_probs=122.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ...+|||||+|+||+-+|+.+...||.|+.++|+. -.......|...++.+.+++. .+|+|++|+ .-..++.++   
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil---  125 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL---  125 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---
Confidence            34689999999999999999999999999999975 333344457777888888775 689999999 577888888   


Q ss_pred             cccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCc--eEEEe---cC----CHHHHHHH
Q 018213          149 HGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQ--LIFLA---AG----DKSLYNTV  217 (359)
Q Consensus       149 ~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~---~g----~~~~~~~v  217 (359)
                      +..-.+ ++.|+++++..+...-....+.+.|. +....+. +|++|+........  ..++.   .+    .++.++.+
T Consensus       126 atypfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~f  204 (480)
T KOG2380|consen  126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFF  204 (480)
T ss_pred             HhcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHH
Confidence            555444 89999999999988877777888775 4455554 88998874433322  22222   13    37889999


Q ss_pred             HHHHHHhCCCeEEeCcc
Q 018213          218 APLLDIMGKSRFYLGDV  234 (359)
Q Consensus       218 ~~ll~~lg~~~~~~g~~  234 (359)
                      .+++...|.+.+++.-.
T Consensus       205 leIf~cegckmVemS~e  221 (480)
T KOG2380|consen  205 LEIFACEGCKMVEMSYE  221 (480)
T ss_pred             HHHHHhcCCeEEEEEee
Confidence            99999999998887553

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.25  E-value=2.8e-11  Score=109.69  Aligned_cols=112  Identities=21%  Similarity=0.235  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++|+|+|.||+.+|+.|..+|++|++++|++++.....+.+....  .+++++++++|+|+.++|.+     ++ 
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii-  222 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL-  222 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh-
Confidence            77899999999999999999999999999999999876655555554432  35677889999999999864     33 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                       +++.++.|+++.++||+++.+..+.  + +..++.|+..+-+|
T Consensus       223 -~~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~  262 (287)
T TIGR02853       223 -TADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP  262 (287)
T ss_pred             -CHHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence             3455677899999999988654432  3 45667777666444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.20  E-value=5.3e-10  Score=99.37  Aligned_cols=226  Identities=16%  Similarity=0.182  Sum_probs=144.6

Q ss_pred             CCcEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213           94 GCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus        94 g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      .++|++++|++++.+.+.+ .|+....+..++++++|+||+|++ +..+..++   +++.+.+.++++||+++.+-+.  
T Consensus         9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~--   82 (245)
T TIGR00112         9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTL--   82 (245)
T ss_pred             CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCH--
Confidence            3689999999888777655 477778888899999999999996 89999988   7776656678899988766554  


Q ss_pred             HHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCCeEEeCc--cChHHHHHHHHHHH
Q 018213          173 KLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMI  247 (359)
Q Consensus       173 ~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~lg~~~~~~g~--~~~~~~~kl~~n~~  247 (359)
                      +.+.+.+... ..++- .|..  +.....+...+..+.  +++..+.++.+|+.+|...+ +.+  ......+.-....+
T Consensus        83 ~~l~~~~~~~-~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~-v~E~~~~~~talsgsgPA~  158 (245)
T TIGR00112        83 EKLSQLLGGT-RRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVE-LPEALMDAVTALSGSGPAY  158 (245)
T ss_pred             HHHHHHcCCC-CeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhccCcHHH
Confidence            3466666322 22222 3332  122223444333332  56677899999999997554 444  33233333344555


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhc--ccc-cccCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 018213          248 MGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLK--GPS-MIESLYPTAFPLKHQQKDLRLALGLAESVSQ  323 (359)
Q Consensus       248 ~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~--~~~-~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~  323 (359)
                      .+.++..+.++   +.+.|+++++..+++.++.. ...+....  .+. +.+.-..|+.+..       ..++..++.|+
T Consensus       159 ~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~-------~gl~~Le~~~~  228 (245)
T TIGR00112       159 VFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTI-------AGLAVLEEKGV  228 (245)
T ss_pred             HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHH-------HHHHHHHHCCh
Confidence            55555555554   48899999999999987643 22233221  111 2222234443333       34566788888


Q ss_pred             CchHHHHHHHHHHHHH
Q 018213          324 STPIAAAANELYKVAK  339 (359)
Q Consensus       324 ~~p~~~~~~~~~~~a~  339 (359)
                      ..-+.+++.+.++++.
T Consensus       229 ~~~~~~a~~aa~~r~~  244 (245)
T TIGR00112       229 RGAVIEAVEAAVRRSR  244 (245)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888888888877653

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=99.18  E-value=3.7e-09  Score=89.98  Aligned_cols=128  Identities=13%  Similarity=0.192  Sum_probs=91.5

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      |+|+|||. |.||+.+++.|.+.|+.|.                          +++||+|++|+| ...+..++   ++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~   50 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES   50 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence            57999998 9999999999999999985                          258999999998 66777777   44


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccC-CceEEEec--CCHHHHHHHHHHHHHhCC
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~--g~~~~~~~v~~ll~~lg~  226 (359)
                      +.      .+++|+++.+....    +.    ...|++ ||++|+...... ....+++.  .+++..+.++++++  |.
T Consensus        51 ~~------~~v~Dv~SvK~~i~----~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~  114 (197)
T PRK06444         51 YD------NNFVEISSVKWPFK----KY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY  114 (197)
T ss_pred             hC------CeEEeccccCHHHH----Hh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence            42      37999998877422    21    346777 999985543321 12223332  25566788899988  78


Q ss_pred             CeEEeCccChHHHHHHHHH
Q 018213          227 SRFYLGDVGNGAAMKLVVN  245 (359)
Q Consensus       227 ~~~~~g~~~~~~~~kl~~n  245 (359)
                      +++.+.+..+...+..++.
T Consensus       115 ~~~~~t~eeHD~~~A~ish  133 (197)
T PRK06444        115 HFVEMTADEHDLLMSEIMV  133 (197)
T ss_pred             EEEEeCHHHHHHHHHHHHH
Confidence            8888877766666655543

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.17  E-value=6.4e-09  Score=89.15  Aligned_cols=191  Identities=16%  Similarity=0.206  Sum_probs=130.2

Q ss_pred             CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCCccCCCHHHHhh
Q 018213           72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~~~~~~~~~~~~  126 (359)
                      |||.|.|+|+-                    |..+|-.++..||+|.+.+++.+-     .+...+.|++.+++..+.++
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~   81 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE   81 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence            67888888875                    788999999999999999987653     33455679999999999999


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH-HHHHHHHHhc----CCee-ecCCCCCCCccccC
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKAT----GASF-LEAPVSGSKKPAED  200 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~~----~~~~-~~~~~~~~~~~~~~  200 (359)
                      .+++.++.+|....|-.+.   +++++.++.|+++.|+++.+|... ..|...|+.+    |+.- ..+.+-|.+.   .
T Consensus        82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h  155 (340)
T COG4007          82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H  155 (340)
T ss_pred             cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence            9999999999999999998   999999999999999999987642 3333344322    3321 2233333332   2


Q ss_pred             CceEEEec--------CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 018213          201 GQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPN  270 (359)
Q Consensus       201 ~~~~~~~~--------g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~  270 (359)
                      +.. ++.+        ..++..++..++.++.|+.++.+.. ..-.+..-....+....+.++.+-+.+.. -.|.+.+
T Consensus       156 ~~y-viagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e  232 (340)
T COG4007         156 GHY-VIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE  232 (340)
T ss_pred             ceE-EEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            222 2222        1678889999999999999887764 21222222223344444455555555544 3455443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=99.17  E-value=1.9e-09  Score=96.28  Aligned_cols=277  Identities=15%  Similarity=0.093  Sum_probs=164.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-------CCcEEEEcCCccchh---HHHh------------------CCCccCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------------------LGAKYQPS  120 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-------g~~V~~~d~~~~~~~---~~~~------------------~g~~~~~~  120 (359)
                      ....+|+|||.|++|+++|+.+...       ..+|..|-+..+...   .+.+                  .++...++
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            4457899999999999999998652       235666654322111   1111                  02345778


Q ss_pred             HHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH---------HHHHHHHHHHhcCCeeecCCC
Q 018213          121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---------TSKLINGHIKATGASFLEAPV  191 (359)
Q Consensus       121 ~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~---------~~~~l~~~l~~~~~~~~~~~~  191 (359)
                      +.+++++|||++..+| .+.+..++   +++...++++...|.++.|-..         .++.+.+++ .-...++..+.
T Consensus        99 l~ea~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~l-gI~~~vL~GaN  173 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRAL-GIPCSVLMGAN  173 (372)
T ss_pred             HHHHhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHh-CCCceeecCCc
Confidence            9999999999999998 67888888   8899999999999988655221         223333333 22345666676


Q ss_pred             CCCCccccCCceEEEecCCH-HHHHHHHHHHHHhCCCeEEeCc---cChHHHHHHH--------------HHHHHHHHHH
Q 018213          192 SGSKKPAEDGQLIFLAAGDK-SLYNTVAPLLDIMGKSRFYLGD---VGNGAAMKLV--------------VNMIMGSMMA  253 (359)
Q Consensus       192 ~~~~~~~~~~~~~~~~~g~~-~~~~~v~~ll~~lg~~~~~~g~---~~~~~~~kl~--------------~n~~~~~~~~  253 (359)
                      ++.+.....-....+...++ +.-..+..+|+.-.++++...+   .....++|-+              .|.-.+.+..
T Consensus       174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~  253 (372)
T KOG2711|consen  174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRL  253 (372)
T ss_pred             hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHh
Confidence            66665444433334444333 3333588888888888777766   2233334432              3455556677


Q ss_pred             HHHHHHHHHHHcCCC--HHH------HHHHHhhccc-cc-hhhh---hcccccccCCC--CCCcchhHHHHHHHHHHHHH
Q 018213          254 TFSEGLLHSEKVGLD--PNV------LVEVVSQGAI-SA-PMYS---LKGPSMIESLY--PTAFPLKHQQKDLRLALGLA  318 (359)
Q Consensus       254 ~~~Ea~~l~~~~Gi~--~~~------~~~~~~~~~~-~s-~~~~---~~~~~~~~~~~--~~~~~~~~~~kd~~~~~~~a  318 (359)
                      .+.|+..+++..--.  +++      +.|++....+ .+ +..+   ..+..+...+.  -.+..+. +.-..+.+.+++
T Consensus       254 Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~Q-G~~Ta~~Vy~~L  332 (372)
T KOG2711|consen  254 GLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQ-GPATAKEVYELL  332 (372)
T ss_pred             hHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCccc-CcHHHHHHHHHH
Confidence            888888887764322  222      2233333211 11 1111   11111110000  0111111 112246788899


Q ss_pred             HhcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          319 ESVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       319 ~~~g~--~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      ++.++  ..|+..++++++.       ++....++++.+++.
T Consensus       333 ~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~  367 (372)
T KOG2711|consen  333 QKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH  367 (372)
T ss_pred             HHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence            99999  7899999988874       556788888888765

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.16  E-value=1.3e-10  Score=93.91  Aligned_cols=91  Identities=26%  Similarity=0.275  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++++|+|||+|..|.+.|..|+..|++|++..|..+ ..+...+.|.+.. +..|+++++|+|++.+| ++....++  
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P-D~~q~~vy--   77 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP-DEVQPEVY--   77 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHH--
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC-hHHHHHHH--
Confidence            4568999999999999999999999999999888765 5556667788765 88999999999999998 44555565  


Q ss_pred             cccccccCCCCCEEEe
Q 018213          148 KHGAASGMGPGKGYVD  163 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~  163 (359)
                      ++++.+.|++|+.++-
T Consensus        78 ~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   78 EEEIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHHHS-TT-EEEE
T ss_pred             HHHHHhhCCCCCEEEe
Confidence            4778889999998763

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.14  E-value=1.5e-10  Score=95.61  Aligned_cols=114  Identities=21%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CC----ccCCCHHHHhhcCCEEEEeeCChhH-H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA----KYQPSPDEVAASCDVTFAMLADPES-A  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~----~~~~~~~~~~~~aDivi~~~p~~~~-~  141 (359)
                      .++++|+|+|+|.||..+++.|...| .+|.+++|++++.+.+.+. +.    ....+.+++++++|+|++++|.+.. .
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~   96 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG   96 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence            55688999999999999999999986 7899999998776665443 22    1345677778999999999986654 2


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....+    ....++++.+++|++..++..  .+.+.+++.|+.+++
T Consensus        97 ~~~~~----~~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~  137 (155)
T cd01065          97 DELPL----PPSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTID  137 (155)
T ss_pred             CCCCC----CHHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence            22221    112468999999998875554  788888888887776

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.14  E-value=3.7e-10  Score=101.62  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH--CCCcEE-EEcCCccchhHHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~-g-~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ++.+||||||+|+||+.+++.|..  .++++. ++||++++.+.+.+. + ...++++++++.++|+|++|+|...+ .+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e   82 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA   82 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence            456899999999999999999986  377875 789988776665543 4 35677899999999999999985443 44


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCee
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +.   .   ..++.|..++..+.+...+.+++.+..+++|..+
T Consensus        83 ~~---~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l  119 (271)
T PRK13302         83 IV---E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI  119 (271)
T ss_pred             HH---H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence            43   2   3356777777777777777889999988888765

>PLN02494 adenosylhomocysteinase

Probab=99.12  E-value=1.8e-10  Score=109.05  Aligned_cols=103  Identities=13%  Similarity=0.033  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|+|+|.||+.+|+.+..+|++|+++++++.+.......|.... +++++++.+|+|+.+..    +++++  +
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI--~  324 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII--M  324 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--H
Confidence            67899999999999999999999999999999998876555555566544 78899999999998653    33444  3


Q ss_pred             ccccccCCCCCEEEeccC-CChHHHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVST-VDGDTSKLINGH  178 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~  178 (359)
                      .+.++.|++|++++|+++ +..++..+|.+.
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            556788999999999999 467888888776

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.09  E-value=4.9e-10  Score=105.30  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|+|+|.+|+.+|+.++.+|++|+++++++.+.......|.... +++++++.+|+||.++.    +.+++  +
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI--~  265 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVI--R  265 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHH--H
Confidence            67899999999999999999999999999999998876555555676544 67888999999998774    24455  3


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHHHHHHh
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKA  181 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~  181 (359)
                      .+.+..|++|++++|+++... ++.++|.+.+.+
T Consensus       266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVE  299 (406)
T ss_pred             HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence            446788999999999999886 888888886654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.05  E-value=1.5e-08  Score=87.31  Aligned_cols=251  Identities=17%  Similarity=0.206  Sum_probs=159.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhH-HHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      |++|+||.|+|..++++.+...|.    ++..+..+...... +...|++.+.+..+.++.+|++++++ ++..+..++ 
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl-   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL-   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence            569999999999999999999884    56666663333333 55668887777788999999999999 788888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~  223 (359)
                        .++......+.+++.+.-|....  .+.+.+. ...+++- .|.  .+.....+..++..+.  ..+..+.++++++.
T Consensus        79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRvmpN--tp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~  151 (267)
T KOG3124|consen   79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRVMPN--TPSVVGEGASVYAIGCHATNEDLELVEELLSA  151 (267)
T ss_pred             --hcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEecCC--ChhhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence              67766677888999887665543  3555553 2222332 121  1222233333333332  45666889999999


Q ss_pred             hCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhcc--cccccCCC
Q 018213          224 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--PSMIESLY  298 (359)
Q Consensus       224 lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~--~~~~~~~~  298 (359)
                      .|+.. .+.+  ......+--....+.+.++.++.+.   ..+.|++.+..+++..++- +...+...-.  |.+++++.
T Consensus       152 vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V  227 (267)
T KOG3124|consen  152 VGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDV  227 (267)
T ss_pred             cCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCC
Confidence            99854 2333  2111111112233444444334333   3789999999999988763 3333333322  44555444


Q ss_pred             -CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          299 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       299 -~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                       .|+.+.-+       .+...++-|++.-++.++.+--.++.+.+
T Consensus       228 ~SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~  265 (267)
T KOG3124|consen  228 CSPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG  265 (267)
T ss_pred             CCCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence             56543333       35578888999999999998888877653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.98  E-value=3e-09  Score=97.04  Aligned_cols=112  Identities=22%  Similarity=0.268  Sum_probs=84.8

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++.+++++|||+|.+|+.++..|..+|.+|++++|++++.+.....|....  .++.+.+.++|+||.++|..     ++
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i  223 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL  223 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh
Confidence            367899999999999999999999999999999999876665556666543  35667888999999999743     23


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                        +++.++.|+++.++||++..+....  + +..+..|+..+..
T Consensus       224 --~~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~  262 (296)
T PRK08306        224 --TKEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA  262 (296)
T ss_pred             --hHHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence              2455677899999999987654322  2 3445667666643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.97  E-value=4.3e-09  Score=90.47  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++|+|+|+|+|+||+.+|+.|.++|++|+++|+++++.+.+.+. +....++ ++++. ++|+++.|....     ++ 
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~-----~I-   98 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG-----VI-   98 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc-----cc-
Confidence            778999999999999999999999999999999998877766554 6655533 55554 799999776433     33 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       +++.++.++ ..+|+.-+++...+ ..-.+.|+++|+.|++
T Consensus        99 -~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P  137 (200)
T cd01075          99 -NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP  137 (200)
T ss_pred             -CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence             233344554 45777776665543 4677888899999986

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.94  E-value=1.1e-07  Score=84.11  Aligned_cols=244  Identities=16%  Similarity=0.147  Sum_probs=164.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV  130 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi  130 (359)
                      +||+-||+|.+|......++-.  ..+|+++|.+..++.....                   .+..+.++.+..++++|+
T Consensus         2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl   81 (481)
T KOG2666|consen    2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL   81 (481)
T ss_pred             ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence            6799999999999877766543  2578888887766543321                   123456688999999999


Q ss_pred             EEEeeCChhHHHHHhcc-----------cccccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCe--eecCCCCCCC
Q 018213          131 TFAMLADPESAMDVACG-----------KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGAS--FLEAPVSGSK  195 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~-----------~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~--~~~~~~~~~~  195 (359)
                      |++.+..|..+...=.|           .+-+.+.-...++++.-|+.+....+.+...+..  .|+.  .+..|-|-.+
T Consensus        82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae  161 (481)
T KOG2666|consen   82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE  161 (481)
T ss_pred             EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence            99999655444322100           0222233456789999999999988889888853  2544  3445544222


Q ss_pred             ---ccccCCceEEEecC--CHHHHHHH---HHHHHHhCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018213          196 ---KPAEDGQLIFLAAG--DKSLYNTV---APLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG  266 (359)
Q Consensus       196 ---~~~~~~~~~~~~~g--~~~~~~~v---~~ll~~lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G  266 (359)
                         .....++..+++||  .++..+.+   ..+.+.+-. .-+.+.+..+++..|++.|.+++--+..++.+.++|++.|
T Consensus       162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg  241 (481)
T KOG2666|consen  162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG  241 (481)
T ss_pred             cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence               11223444566776  34444444   445555432 2345666778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCC
Q 018213          267 LDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS  324 (359)
Q Consensus       267 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~  324 (359)
                      .+..++..++.......       +..+  +..-||....+.||.-..+-+++-+|+|
T Consensus       242 adv~eva~avg~d~rig-------~kfl--~asvgfggscfqkdilnlvyice~lnlp  290 (481)
T KOG2666|consen  242 ADVSEVAYAVGTDSRIG-------SKFL--NASVGFGGSCFQKDILNLVYICECLNLP  290 (481)
T ss_pred             CCHHHHHHHhccccccc-------HHHh--hcccCcCchhHHHHHHHHHHHHhcCCCh
Confidence            99999988877532211       1111  1134566678899988888899988887

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.89  E-value=1.2e-08  Score=85.99  Aligned_cols=200  Identities=16%  Similarity=0.140  Sum_probs=135.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC--------------CccCCCHHHHhh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVAA  126 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~~  126 (359)
                      -||+|+|.|.+|+.+|..++..|++|..||..++.+...           .+.|              +..+.+++|+.+
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk   83 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK   83 (313)
T ss_pred             cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence            569999999999999999999999999999987654321           1112              244679999999


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  206 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (359)
                      ++=.|-.|+|..-+.+.-++  +.+-.-+.+. .|+..|+ +......+.+.|.++.-..+.+|+..+--    -+++-+
T Consensus        84 ~Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~~-tIlaSST-St~mpS~~s~gL~~k~q~lvaHPvNPPyf----iPLvEl  155 (313)
T KOG2305|consen   84 GAIHIQECVPEDLNLKKQLY--KQLDEIADPT-TILASST-STFMPSKFSAGLINKEQCLVAHPVNPPYF----IPLVEL  155 (313)
T ss_pred             hhhhHHhhchHhhHHHHHHH--HHHHHhcCCc-eEEeccc-cccChHHHhhhhhhhhheeEecCCCCCcc----cchhee
Confidence            99999999998877777663  4443334444 4443333 33333345555655555667777643211    122222


Q ss_pred             ec---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc
Q 018213          207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA  283 (359)
Q Consensus       207 ~~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s  283 (359)
                      +.   ..++.+++.+++.+.+|..++....+-.+.++    |-+-   .+.++|...++...++...+++.+++.+-+..
T Consensus       156 VPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~l----nriq---~Ailne~wrLvasGil~v~dvD~VmS~GLG~R  228 (313)
T KOG2305|consen  156 VPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFAL----NRIQ---YAILNETWRLVASGILNVNDVDAVMSAGLGPR  228 (313)
T ss_pred             ccCCCCChhHHHHHHHHHHHhCCCCccccccccccee----cccc---HHHHHHHHHHHHccCcchhhHHHHHhcCCCcc
Confidence            32   26889999999999999888766552213322    3222   34567999999999999999999998875554


Q ss_pred             hhh
Q 018213          284 PMY  286 (359)
Q Consensus       284 ~~~  286 (359)
                      ..+
T Consensus       229 YAf  231 (313)
T KOG2305|consen  229 YAF  231 (313)
T ss_pred             hhc
Confidence            443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.88  E-value=5.3e-09  Score=85.13  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.++++.|+|+|.+|+.+|+.|+..|.+|++++++|-+.-+..-.|.+.. +++++++.+|+++.++...    +++  .
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~----~vi--~   93 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNK----DVI--T   93 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSS----SSB---
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCc----ccc--C
Confidence            78899999999999999999999999999999999876655555687765 7999999999999887432    223  2


Q ss_pred             ccccccCCCCCEEEeccCCCh
Q 018213          149 HGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      .+.+..||+|+++.|.+....
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTT
T ss_pred             HHHHHHhcCCeEEeccCcCce
Confidence            344578999999999976544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.88  E-value=7.6e-09  Score=97.91  Aligned_cols=101  Identities=18%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|+|+|.||+.+|+.++.+|.+|+++++++.+.......|... .+++++++.+|+||.++..    .+++  +
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~----~~vI--~  282 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGN----KDVI--T  282 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCC----HHHH--H
Confidence            6789999999999999999999999999999999987765555556654 4788999999999988742    3345  3


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLIN  176 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~  176 (359)
                      .+.+..|++|++++|.++... .+...+.
T Consensus       283 ~~~~~~mK~GailiNvG~~d~Eid~~~L~  311 (425)
T PRK05476        283 AEHMEAMKDGAILANIGHFDNEIDVAALE  311 (425)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccChHHHh
Confidence            456788999999999988764 3444443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.88  E-value=1.4e-08  Score=91.36  Aligned_cols=108  Identities=20%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCc-EEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      |||||||+|.||+.+++.+...  +++ +.++|+++++.+.+.+ .+...+.++++++.++|+|++|+| +.......  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~-~~~~~~~~--   78 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS-VNAVEEVV--   78 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC-hHHHHHHH--
Confidence            6899999999999999999875  455 4578999877666554 356667899999899999999997 55555554  


Q ss_pred             cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCee
Q 018213          148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASF  186 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~~  186 (359)
                       ..   .++.|..++..+.+   .....+.+.+..++.|..+
T Consensus        79 -~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l  116 (265)
T PRK13304         79 -PK---SLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI  116 (265)
T ss_pred             -HH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence             33   34456666666554   3445567777777777543

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=98.86  E-value=1e-09  Score=98.62  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=119.3

Q ss_pred             CCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCCCcE
Q 018213           18 TPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDV   97 (359)
Q Consensus        18 ~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V   97 (359)
                      .-++-+++++.|+-.-..+..++|.|.....         +.+.........++.++|++|+|+.|++++.+...+|+.|
T Consensus       134 ~stl~hIl~l~rrntw~cq~l~eg~~~q~~~---------q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~  204 (435)
T KOG0067|consen  134 DSTLCHILNLYRRNTWLCQALREGTCTQGLE---------QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVV  204 (435)
T ss_pred             HHHHHHHHhhhcccchhhhhhcccceeechh---------hhhhhhhccccccccceeeeccccccceehhhhhccccee
Confidence            3345556666676666667777777752211         1122223333378889999999999999999999999999


Q ss_pred             EEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHH
Q 018213           98 TVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN  176 (359)
Q Consensus        98 ~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~  176 (359)
                      +.||+....  -+ ...|...+.++.|++-++|-+.+++..+++..+++  +.--...|+.|..++|++++..+++.+|.
T Consensus       205 ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta~gglvdekaLa  280 (435)
T KOG0067|consen  205 IFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTARGGLVDEKALA  280 (435)
T ss_pred             eeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeecccccCChHHHH
Confidence            999975422  22 12366777789999999999999999999999988  56666789999999999999999999999


Q ss_pred             HHHHhcCCee
Q 018213          177 GHIKATGASF  186 (359)
Q Consensus       177 ~~l~~~~~~~  186 (359)
                      ++|+++.++.
T Consensus       281 qaLk~G~i~~  290 (435)
T KOG0067|consen  281 QALKSGRIRG  290 (435)
T ss_pred             hhhccCceec
Confidence            9998876653

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.85  E-value=4.1e-09  Score=98.63  Aligned_cols=89  Identities=17%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC------ccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +++++|+|||+|.+|.+.|..|...|++|++--|.      .+..+.+.+.|... .+++|+++.||+|++.+|++ + .
T Consensus        34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~-q  110 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q-H  110 (487)
T ss_pred             hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-H
Confidence            78899999999999999999999999999855443      23334444567755 68999999999999999977 4 4


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      ..+  .+++++.|++|+.+.
T Consensus       111 ~~v--~~~i~p~LK~Ga~L~  128 (487)
T PRK05225        111 SDV--VRAVQPLMKQGAALG  128 (487)
T ss_pred             HHH--HHHHHhhCCCCCEEE
Confidence            544  388999999998875

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.80  E-value=2.2e-08  Score=90.07  Aligned_cols=79  Identities=27%  Similarity=0.372  Sum_probs=66.2

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.+++|+|||.| .||+.+|..|.+.|++|++|++...              ++.+++++||+||.+++.+..+... 
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~-  219 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDAD-  219 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHh-
Confidence            35889999999996 9999999999999999999987542              6788899999999999877544333 


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                              .+++|+++||++...
T Consensus       220 --------~ik~GaiVIDvgin~  234 (301)
T PRK14194        220 --------WLKPGAVVIDVGINR  234 (301)
T ss_pred             --------hccCCcEEEEecccc
Confidence                    278999999997543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.75  E-value=8.3e-08  Score=90.69  Aligned_cols=93  Identities=17%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|+|+|.||..+++.++.+|.+|+++++++.+.......|+... +.++.++.+|+||.++...    .++  +
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~----~~i--~  272 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK----DII--T  272 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH----HHH--H
Confidence            67899999999999999999999999999999999888777777787544 5678888999999987532    344  2


Q ss_pred             ccccccCCCCCEEEeccCCC
Q 018213          149 HGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .+.+..|++|.+++|+++..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~  292 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFD  292 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCC
Confidence            34467899999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.67  E-value=8.6e-08  Score=84.58  Aligned_cols=90  Identities=24%  Similarity=0.291  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++++|+|||+|.-|.+-|..|+..|.+|++--|.... .+...+.|..+. +.+|+++.+|+|.+.+|+ ..-..++  
T Consensus        16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy--   91 (338)
T COG0059          16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVY--   91 (338)
T ss_pred             hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHH--
Confidence            78899999999999999999999999999887765444 455556677755 899999999999999984 4555666  


Q ss_pred             cccccccCCCCCEEE
Q 018213          148 KHGAASGMGPGKGYV  162 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi  162 (359)
                      .+++.+.|++|+.+.
T Consensus        92 ~~~I~p~Lk~G~aL~  106 (338)
T COG0059          92 EKEIAPNLKEGAALG  106 (338)
T ss_pred             HHHhhhhhcCCceEE
Confidence            358888999988553

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.67  E-value=2e-07  Score=73.34  Aligned_cols=108  Identities=17%  Similarity=0.256  Sum_probs=79.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHH-hCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLI-SLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~-~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      ++|||||+|.+|+.....+...  ++++. ++|+++++.+.+. ..++..+++.++++.  +.|+|++++|...+...+.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            3799999999999999988876  35654 7899988777654 458888999999998  6899999998655554443


Q ss_pred             cccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          146 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                             ..++.|..++--  -.....+.+++.+..++.+..+
T Consensus        81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~  116 (120)
T PF01408_consen   81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV  116 (120)
T ss_dssp             -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred             -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence                   234455544433  2336777888888888777543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.66  E-value=5.6e-08  Score=89.63  Aligned_cols=111  Identities=14%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ...++|+|||+|.+|..+++.+.. ++ .+|.+|+|++++.+.+.+.    +  +..+.+.+++++++|||+.++|.+  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            345799999999999999986654 44 6899999999887776653    3  455678899999999998888643  


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       ..++   .  .+.+++|++ ||.....+....++...+..++..|++
T Consensus       201 -~pvl---~--~~~l~~g~~-i~~ig~~~~~~~El~~~~~~~a~~~vD  241 (314)
T PRK06141        201 -EPLV---R--GEWLKPGTH-LDLVGNFTPDMRECDDEAIRRASVYVD  241 (314)
T ss_pred             -CCEe---c--HHHcCCCCE-EEeeCCCCcccccCCHHHHhcCcEEEc
Confidence             3444   1  145788884 555444444444555555444444554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.64  E-value=2.6e-08  Score=80.15  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCC------CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG------AKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g------~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ++++++.|||+|.+|++++..|...|.+ |++++|+.++.+.+.+.-      ....+++.+.+.++|+||.++|.+.. 
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~-   88 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP-   88 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST-
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc-
Confidence            7789999999999999999999999986 999999998887776531      12345666778899999999986643 


Q ss_pred             HHHhcccccccccCCCC-CEEEeccC
Q 018213          142 MDVACGKHGAASGMGPG-KGYVDVST  166 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~-~~vi~~s~  166 (359)
                        .+  .++.+....+. .+++|.+.
T Consensus        89 --~i--~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   89 --II--TEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             --SS--THHHHTTTCHHCSEEEES-S
T ss_pred             --cc--CHHHHHHHHhhhhceecccc
Confidence              22  12222222222 48999964

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.63  E-value=1.5e-07  Score=85.04  Aligned_cols=77  Identities=30%  Similarity=0.372  Sum_probs=64.1

Q ss_pred             cCCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEc-CCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           68 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        68 ~~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++++++|+||| .|.||..+|..|.+.|++|++|+ |++               ++++++++||+|+.+++.+..++.. 
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~-  218 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD-  218 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence            48899999999 89999999999999999999995 543               4678889999999999876543322 


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                              .+++|+++||++...
T Consensus       219 --------~lk~GavVIDvGin~  233 (296)
T PRK14188        219 --------WIKPGATVIDVGINR  233 (296)
T ss_pred             --------eecCCCEEEEcCCcc
Confidence                    278999999997543

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=8e-07  Score=75.28  Aligned_cols=192  Identities=16%  Similarity=0.125  Sum_probs=122.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ...+.+++||+|..|++...+....++.+.. ..|++++.+.+.+.-+-...+.+...+-.+++++.+|+. ....+.  
T Consensus         8 ~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va--   84 (289)
T COG5495           8 PARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA--   84 (289)
T ss_pred             ceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH--
Confidence            4558899999999999977777666666654 356666666555432222223333334457888888754 344443  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC---CCCccc--cCCceEEEecCCHHHHHHHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS---GSKKPA--EDGQLIFLAAGDKSLYNTVAPLL  221 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~---~~~~~~--~~~~~~~~~~g~~~~~~~v~~ll  221 (359)
                       .  ...-.+|+++++||.....   .+.+.+...|..-.. +|.|   |.+...  -.++.+.+..+|+.-...++.+.
T Consensus        85 -a--~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la  158 (289)
T COG5495          85 -A--TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLA  158 (289)
T ss_pred             -H--hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHH
Confidence             1  1234689999999765543   345555554443222 4433   333222  23455555567777778899999


Q ss_pred             HHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213          222 DIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  270 (359)
Q Consensus       222 ~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  270 (359)
                      ..+|..++.+.+.. -.......+...+..+..+.++..+-+..|+|.-
T Consensus       159 ~emgg~~f~V~~~~-r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~  206 (289)
T COG5495         159 LEMGGEPFCVREEA-RILYHAAAVHASNFIVTVLADALEIYRAAGDDQP  206 (289)
T ss_pred             HHhCCCceeechhH-HHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence            99999887665533 5556666777777778888899999999998743

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.61  E-value=8.1e-08  Score=78.85  Aligned_cols=100  Identities=19%  Similarity=0.313  Sum_probs=76.1

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--------------CCHHHHhhcCCEEEEeeCChh
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |+|+|.|.||..+|..|++.|++|.++.|++ ..+.+.+.|+...              .+..+.....|+|++|+ +..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence            7899999999999999999999999999987 6666666554321              11223457899999999 788


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHH
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI  179 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  179 (359)
                      +++.++   +.+.+.+.+++.++..-+|... .+.+.+.+
T Consensus        79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~  114 (151)
T PF02558_consen   79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYF  114 (151)
T ss_dssp             GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHS
T ss_pred             chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHc
Confidence            999998   7788888888888877776443 34555555

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.55  E-value=3.4e-07  Score=85.36  Aligned_cols=109  Identities=21%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCC---Cc-------cCCCHHHHhhcCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---AK-------YQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~~-------~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      +|+|.|||+|.+|+.+|..|++.| .+|++.||+.++.+++.+..   ++       -.+.+.+++++.|+||.+.| +.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p-~~   79 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP-PF   79 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC-ch
Confidence            378999999999999999999999 99999999988887775542   21       13356688999999999998 44


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      ....++   +   ..++.|..++|+|-..+.. .++.+..++.|+.++
T Consensus        80 ~~~~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v  120 (389)
T COG1748          80 VDLTIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV  120 (389)
T ss_pred             hhHHHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence            444554   2   3466788888887766654 566666666665544

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.53  E-value=1.4e-07  Score=88.83  Aligned_cols=96  Identities=22%  Similarity=0.319  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc---C---CCHHHHhhcCCEEEEeeCCh-hH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY---Q---PSPDEVAASCDVTFAMLADP-ES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~---~---~~~~~~~~~aDivi~~~p~~-~~  140 (359)
                      ..+.+|.|||+|.+|...++.+..+|.+|+++|+++++.+.+... +...   .   .++.+.++++|+||.+++.+ ..
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            456789999999999999999999999999999998776655433 2211   1   23566778999999998432 12


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ...++  +++.+..|+++.+|||++.
T Consensus       245 ~p~li--t~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       245 APKLV--SNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             CCcCc--CHHHHhcCCCCCEEEEEec
Confidence            23344  4566677999999999974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.51  E-value=6.7e-07  Score=75.71  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCc-EEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++|||||+|.||..+.+.+..-  +++ |.+|||+.++...+.+. +...+.+++|++++.|+++.|. ..+.+++..  
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~--   77 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV--   77 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence            4799999999999999998753  344 67899999887766543 4555688999999999999999 477777776  


Q ss_pred             cccccccCCCCCEEEeccCCChHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                       .   +.++.|.-+|-.|.|...++
T Consensus        78 -~---~~L~~g~d~iV~SVGALad~   98 (255)
T COG1712          78 -P---KILKAGIDVIVMSVGALADE   98 (255)
T ss_pred             -H---HHHhcCCCEEEEechhccCh
Confidence             3   34566666666666655543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.50  E-value=4.3e-07  Score=82.05  Aligned_cols=114  Identities=25%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHH-hhcCCEEEEeeCChh--HH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivi~~~p~~~--~~  141 (359)
                      ..++++.|+|+|.+|++++..|...|++|++++|++++.+.+.+.    +.....+.++. ..++|+||.++|...  ..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            446889999999999999999999999999999998776655442    21122233332 357999999998642  11


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....    -....++++.+++|++..++.+  .+.+..++.|+.+++
T Consensus       195 ~~~~----~~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd  235 (270)
T TIGR00507       195 DEPP----VPAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID  235 (270)
T ss_pred             CCCC----CCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence            1111    0123578899999998877655  577888888877766

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.49  E-value=2.6e-07  Score=85.10  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCccC--CCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQ--PSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +.+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. |....  +++.+.+.++|+||.++|.+.. ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            56799999999999999999999866 6899999998876665543 44322  3456777899999999985543 343


Q ss_pred             hcccccccccC-CCCCEEEeccC
Q 018213          145 ACGKHGAASGM-GPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l-~~~~~vi~~s~  166 (359)
                      +   +...... .++.++||++.
T Consensus       255 ~---~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         255 V---ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             H---HHHHhhCCCCCeEEEEeCC
Confidence            3   3322222 36779999974

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.47  E-value=6.3e-07  Score=80.21  Aligned_cols=79  Identities=23%  Similarity=0.232  Sum_probs=64.7

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.+++|+|||. |.||..+|..|.+.|++|++|....              .++.+.+++||+||.+++.+..++.. 
T Consensus       154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~~~v~~~-  218 (284)
T PRK14179        154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRGHFVTKE-  218 (284)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCccccCCHH-
Confidence            3488999999999 9999999999999999999994211              26788899999999999877554332 


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                              .+++|+++||++...
T Consensus       219 --------~ik~GavVIDvgin~  233 (284)
T PRK14179        219 --------FVKEGAVVIDVGMNR  233 (284)
T ss_pred             --------HccCCcEEEEeccee
Confidence                    388999999997543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.43  E-value=1.4e-06  Score=68.84  Aligned_cols=111  Identities=24%  Similarity=0.325  Sum_probs=70.2

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHH-CCCcEE-EEcCCccc-----hhHHH---hCCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSK-----CDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~-~g~~V~-~~d~~~~~-----~~~~~---~~g~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      |||+|+|+ |+||+.+++.+.+ .++++. +++++++.     ...+.   ..++...+++++++..+|++|-.. .++.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence            57999999 9999999999988 678854 57776621     11111   236777889999999999999888 6777


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                      +...+   +..   ++.+..+|..++|......+..+.+.++ +.++-+|
T Consensus        80 ~~~~~---~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~  122 (124)
T PF01113_consen   80 VYDNL---EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP  122 (124)
T ss_dssp             HHHHH---HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred             hHHHH---HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence            77666   333   3447777776777654443444444333 4444444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.39  E-value=2.8e-06  Score=77.49  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCc-cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +.||+|||+|+||+.+++.+... ++++. ++++++ ++..  ...++....+.++++.+.|+|++|+|...+.....  
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~--   78 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA--   78 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence            47899999999999999999765 68876 478875 3222  12344445577777888999999998665544443  


Q ss_pred             cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHh-cCCeeec
Q 018213          148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE  188 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~-~~~~~~~  188 (359)
                           +.+..|..+|++.-.   .+...+.+.++.++ +++.++.
T Consensus        79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~  118 (324)
T TIGR01921        79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS  118 (324)
T ss_pred             -----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence                 446677778876432   23445566666654 3444443

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.38  E-value=3.4e-06  Score=74.35  Aligned_cols=105  Identities=18%  Similarity=0.235  Sum_probs=75.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---CcE-EEEcCCccchhHHHhCCCccCCCHHHH-hhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +||||||+|.||+.+++.+...+   +++ .+++|++++.+.+.+. +..+.+++++ ....|+|+.|.+ ...+++.. 
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~-   79 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA-   79 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH-
Confidence            68999999999999999987532   444 4577877666666544 7778899997 578999999995 66777665 


Q ss_pred             ccccccccCCCCCEEEeccCCChH---HHHHHHHHHHhcCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGA  184 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~  184 (359)
                        ..+   +..|.-++-.|.|...   ..+.+.+..++.+.
T Consensus        80 --~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~  115 (267)
T PRK13301         80 --EGC---LTAGLDMIICSAGALADDALRARLIAAAEAGGA  115 (267)
T ss_pred             --HHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCC
Confidence              333   5566666666766544   45566666655543

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=98.37  E-value=4.8e-05  Score=66.50  Aligned_cols=113  Identities=15%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC
Q 018213          114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS  192 (359)
Q Consensus       114 g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~  192 (359)
                      |++++++..|+++++|++|+-+|....+..++   +++++.+++|++|.|+++.++.....+.+.++++.+.+.+ +|  
T Consensus       126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP--  200 (340)
T TIGR01723       126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP--  200 (340)
T ss_pred             CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC--
Confidence            56778888899999999999999999889999   8999999999999999999988766666666655444433 22  


Q ss_pred             CCCccccCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          193 GSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       193 ~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      +..+... +...+ .-  .++|..+++.++.+..+..++.+..
T Consensus       201 aaVPgt~-~q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~PA  241 (340)
T TIGR01723       201 GCVPEMK-GQVYI-AEGYASEEAVNKLYELGKKARGKAFKMPA  241 (340)
T ss_pred             CCCCCCC-CceEe-ecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence            2223333 23322 33  3899999999999999999887654

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.36  E-value=3.3e-06  Score=75.63  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ++|+|+|+ |.||+.+++.+... ++++. ++|+++++.......++..+.+++++++++|+|+.++| +......+   
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~---   77 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL---   77 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH---
Confidence            78999998 99999999998764 67765 58887765443333356667899999888999998885 44444444   


Q ss_pred             ccccccCCCCCEEEeccCC-ChHHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTV-DGDTSKLING  177 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~  177 (359)
                         ...++.|..++..+++ ...+.+.+.+
T Consensus        78 ---~~al~~G~~vvigttG~s~~~~~~l~~  104 (257)
T PRK00048         78 ---EFALEHGKPLVIGTTGFTEEQLAELEE  104 (257)
T ss_pred             ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence               2345556655544444 4445555555

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.36  E-value=1.4e-06  Score=79.07  Aligned_cols=116  Identities=24%  Similarity=0.195  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-C----CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +.++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. +    +....+..+.+.++|+||.++|....-.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~  200 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGE  200 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCC
Confidence            67789999999999999999999999 6899999998877666543 1    1111133466688999999998654311


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .-.  ..-....++++.+++|+.-.+. .+ .+.+..++.|+..++
T Consensus       201 ~~~--~~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~  242 (278)
T PRK00258        201 LPL--PPLPLSLLRPGTIVYDMIYGPL-PT-PFLAWAKAQGARTID  242 (278)
T ss_pred             CCC--CCCCHHHcCCCCEEEEeecCCC-CC-HHHHHHHHCcCeecC
Confidence            000  0111245678899999976443 33 566677777766554

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.36  E-value=3.5e-06  Score=75.79  Aligned_cols=107  Identities=15%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCcc--chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +||||||+|+||+.+++.+... +.++. ++++...  +.......++..+++++++-.+.|+|+.|.|.. ...+..  
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~--   78 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV--   78 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH--
Confidence            6899999999999999999875 46654 3444322  111111225667788888745689999999744 444443  


Q ss_pred             cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCe
Q 018213          148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS  185 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~  185 (359)
                          ...++.|..++..+.+   .....+.+.+..++.|..
T Consensus        79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence                2345667777765554   233456677777777654

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.35  E-value=1.2e-06  Score=81.16  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ...++||||+|.+|...++.+...  ..+|.+|||++++.+.+.+    .|  +..+.+.++++++||||+.|+|..   
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence            347899999999999988877542  3579999999988776544    24  355789999999999999999743   


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      +.++  .   ...+++|++|..++...|.
T Consensus       204 ~P~~--~---~~~l~~g~~v~~vGs~~p~  227 (325)
T TIGR02371       204 KPVV--K---ADWVSEGTHINAIGADAPG  227 (325)
T ss_pred             CcEe--c---HHHcCCCCEEEecCCCCcc
Confidence            2333  1   2357999999988776553

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.32  E-value=2.6e-06  Score=70.87  Aligned_cols=79  Identities=23%  Similarity=0.324  Sum_probs=62.8

Q ss_pred             cCCCCeEEEEcCChh-hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~i-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++.+++|.|||.|.| |..+++.|.+.|.+|++++|+.              .++.+.+.++|+||.+++.+.    ++ 
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii-  101 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV-  101 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-
Confidence            378899999999997 8889999999999999999863              255678899999999997553    34 


Q ss_pred             ccccccccCCCCCEEEeccCCCh
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                       +.+   .++++.++||++....
T Consensus       102 -~~~---~~~~~~viIDla~prd  120 (168)
T cd01080         102 -KGD---MVKPGAVVIDVGINRV  120 (168)
T ss_pred             -cHH---HccCCeEEEEccCCCc
Confidence             222   3577899999975443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=98.31  E-value=7.3e-05  Score=65.28  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec---CC
Q 018213          114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE---AP  190 (359)
Q Consensus       114 g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~---~~  190 (359)
                      |++++++..|+++++|++|+-+|....+..++   +++++.+++|++|.|+++.++...-.+.+.++++.+.+.+   +.
T Consensus       128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            56778888899999999999999999889999   8999999999999999999988766666666655444333   22


Q ss_pred             CCCCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          191 VSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      +-+.+     |+...--+ .++|..+++.++.++.++.++.+..
T Consensus       205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA  243 (342)
T PRK00961        205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA  243 (342)
T ss_pred             CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence            33322     23322111 3889999999999999999887754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.31  E-value=2.5e-06  Score=77.45  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-----C-C--ccCCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G-A--KYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~--~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      .+++++.|||+|.+|++++..|...|. +|+++||+.++.+.+.+.     . .  ....++.+.+.++|+||.++|...
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm  204 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM  204 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence            566899999999999999999999997 799999998887766542     1 1  112344556788999999998542


Q ss_pred             HHH-H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          140 SAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       140 ~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .-. . -+  +   ...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       205 ~~~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~  248 (284)
T PRK12549        205 AKHPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD  248 (284)
T ss_pred             CCCCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence            111 0 11  1   13467788999987655432  466666777766554

>PLN00203 glutamyl-tRNA reductase

Probab=98.25  E-value=2.1e-06  Score=83.86  Aligned_cols=70  Identities=24%  Similarity=0.383  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--CCc----cCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GAK----YQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~~----~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +.+++|+|||+|.||..+++.|...|. +|++++|++++.+.+.+.  +..    ..+++.+.+.++|+||.|+|.+
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~  340 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE  340 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence            567899999999999999999999996 699999999887777653  221    2346667889999999998644

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.25  E-value=4.3e-06  Score=81.43  Aligned_cols=105  Identities=19%  Similarity=0.286  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHH--hhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +++++++|+|+|.+|++++..|...|++|++++|+.++.+.+.+. +.... +.+++  +.++|+||.|+|....+... 
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~-  407 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA-  407 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH-
Confidence            667899999999999999999999999999999988776665442 21111 22222  46899999999976432211 


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                               +.  .+++|+...++.+.  +.+..++.|...++
T Consensus       408 ---------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~  437 (477)
T PRK09310        408 ---------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY  437 (477)
T ss_pred             ---------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence                     11  38889987766544  77777777766654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.24  E-value=6.3e-06  Score=75.62  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----CCcc-CCCHHHHhhcCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ...++++|||+|.+|+..++.+.. ++ .+|.+|+|++++.+.+.+.    ++.. +.+.++++.++|+|+.|+|.+.  
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence            345799999999999999999965 56 4699999999887766543    2222 4688899999999999998542  


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDT  171 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  171 (359)
                       .++   ..   .+++|++|..+++-.|..
T Consensus       201 -Pl~---~~---~~~~g~hi~~iGs~~p~~  223 (304)
T PRK07340        201 -PVY---PE---AARAGRLVVAVGAFTPDM  223 (304)
T ss_pred             -cee---Cc---cCCCCCEEEecCCCCCCc
Confidence             455   22   468999999988776643

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.21  E-value=1.1e-05  Score=75.36  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             CCeEEEEcCChhh-HHHHHHHHHCCC--c-EEEEcCCccchhHHHh-CCC-ccCCCHHHHhhc--CCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMG-TPMAQNLLKAGC--D-VTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG-~~ia~~l~~~g~--~-V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivi~~~p~~~~~~  142 (359)
                      ++||||||+|.++ ...+..+...+.  + |.++|+++++.+.+.+ .++ ..+++.+++++.  .|+|++++|...+..
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            4789999999666 568888888763  3 5678999988777665 466 478899999986  599999999766665


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .++       ..++.|+.|+.-  -...+.+.+++.+..++.+..+
T Consensus        83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l  121 (342)
T COG0673          83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL  121 (342)
T ss_pred             HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence            554       456677777654  2335667778888887766543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.18  E-value=6.2e-06  Score=76.48  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++++|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+     .++  ..+.+.+++++++|+|+.|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            44789999999999999987753 45 479999999988776654     133  34678899999999999999854  


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       ..++   .   ..+++|++|+.+++-.|.
T Consensus       204 -~p~i---~---~~l~~G~hV~~iGs~~p~  226 (325)
T PRK08618        204 -TPVF---S---EKLKKGVHINAVGSFMPD  226 (325)
T ss_pred             -Ccch---H---HhcCCCcEEEecCCCCcc
Confidence             3444   2   467999999988776553

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.17  E-value=8e-06  Score=73.24  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             ccCCCCeEEEEcCChh-hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~i-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||.|.+ |+.++..|...|..|+++....              .++.+.+++|||||.++|.+.    ++
T Consensus       154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG~~~----~i  215 (285)
T PRK14189        154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVGKRN----VL  215 (285)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCCCcC----cc
Confidence            3478999999999988 9999999999999999886432              367788999999999998543    44


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        +.   .++++|+++||++...
T Consensus       216 --~~---~~ik~gavVIDVGin~  233 (285)
T PRK14189        216 --TA---DMVKPGATVIDVGMNR  233 (285)
T ss_pred             --CH---HHcCCCCEEEEccccc
Confidence              21   5689999999997543

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.17  E-value=1.9e-05  Score=71.02  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=71.9

Q ss_pred             CeEEEEc-CChhhHHHHHHHHH-CCCcEE-EEcCC-ccch-hHHHh------CCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~-~g~~V~-~~d~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      +||+|+| +|+||+.+++.+.. .++++. ++||. ++.. +...+      .++..+++++++...+|+||.++| +..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence            6899999 69999999999986 467765 47743 2221 11111      246667888888557899999996 555


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV  191 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~  191 (359)
                      ....+      ...++.|..+|..+++ .+.+.+.+.++.+..++.++-++.
T Consensus        81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N  126 (266)
T TIGR00036        81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN  126 (266)
T ss_pred             HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence            55554      2345556555543344 445566666666665655554443

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.16  E-value=6.6e-06  Score=64.90  Aligned_cols=92  Identities=17%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             eEEEEc-CChhhHHHHHHHHHC-CCcEEEE-cCCccchhHHHhCC--Cc-c-CC--CHHHH-hhcCCEEEEeeCChhHHH
Q 018213           73 RIGFLG-MGIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK-Y-QP--SPDEV-AASCDVTFAMLADPESAM  142 (359)
Q Consensus        73 ~igiiG-~G~iG~~ia~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~-~~--~~~~~-~~~aDivi~~~p~~~~~~  142 (359)
                      ||+|+| .|.+|..++..+... ++++..+ +++.++.+.+...+  +. . ..  +.+++ ..++|+|++|+|.. ...
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence            589999 599999999999884 7777655 55433333333221  11 0 01  11122 14899999999854 555


Q ss_pred             HHhcccccccccCCCCCEEEeccCCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .++   ..+...+++|+++||+|+..
T Consensus        80 ~~~---~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       80 EIA---PLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHH---HHHHhhhcCCCEEEECCccc
Confidence            554   33345578999999998653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=9.4e-06  Score=72.89  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++.|||.|. +|+.+|..|...|.+|++++++.              .++.+.+++||+||.+++.+.    ++ 
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i-  215 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV-  215 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc-
Confidence            48899999999988 99999999999999999998642              256788899999999998653    33 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                       ..   ..+++|+++||++..
T Consensus       216 -~~---~~vk~gavVIDvGi~  232 (286)
T PRK14175        216 -TK---DVVKEGAVIIDVGNT  232 (286)
T ss_pred             -CH---HHcCCCcEEEEcCCC
Confidence             22   247899999999753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.15  E-value=1.5e-05  Score=73.14  Aligned_cols=65  Identities=14%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----hC--------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL--------GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~--------g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+|.||..+|..++..|+ +|.++|++.+..+...    +.        .+....+.++ +++||+||++++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            689999999999999999999886 8999999765433111    10        1233467766 6899999999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.13  E-value=4.5e-06  Score=80.01  Aligned_cols=71  Identities=24%  Similarity=0.353  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      +.+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. +...  ..++.+.+.++|+||.|++.+.
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence            66789999999999999999999999 7899999998776655442 3222  2356677889999999986543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.13  E-value=2.5e-06  Score=81.97  Aligned_cols=71  Identities=25%  Similarity=0.353  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      +.+++|+|||+|.||..+++.|...|. +|++++|++++...+.+. |...  ..+..+.+.++|+||.|+|.+.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence            667899999999999999999999997 799999998876655543 4322  2345567788999999997543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.13  E-value=6e-06  Score=70.77  Aligned_cols=97  Identities=21%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCc--c--CCC---HHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK--Y--QPS---PDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~aDivi~~~  135 (359)
                      ++++++.|+|. |.+|+.+++.|...|++|++++|+.++.+.+.+.     +..  .  ..+   +.+.++++|+||.++
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            66789999995 9999999999999999999999998766554431     111  1  122   246778899999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChHH
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  171 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  171 (359)
                      |.+..+...      .....+++.+++|+....+..
T Consensus       106 ~~g~~~~~~------~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078         106 AAGVELLEK------LAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CCCceechh------hhcccCceeEEEEccCCCCCC
Confidence            866541111      112344578899987766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=98.13  E-value=9.7e-06  Score=74.39  Aligned_cols=111  Identities=14%  Similarity=0.234  Sum_probs=81.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh----CC---CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG---AKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~----~g---~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      .+++|||+|..+...++.+.. ++ -+|.+|+|+++..+.+..    .+   +..+++.++++++||||+.|+|...   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            689999999999999999875 44 479999999988777653    22   4678899999999999999998554   


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                      .++  .   .+++++|++|..++...|.-.+--.+.+...+..+++.+
T Consensus       208 Pil--~---~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~  250 (330)
T COG2423         208 PVL--K---AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL  250 (330)
T ss_pred             Cee--c---HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence            555  1   346889999998877655443333334433335566643

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.13  E-value=9.3e-06  Score=63.33  Aligned_cols=104  Identities=21%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             CeEEEEc----CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG----~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++|+|||    -+..|..+.+.|.+.|++|+..++..+...     |...+.+++|.-...|++++++| +..+..++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v--   72 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV--   72 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence            4699999    689999999999999999999988765432     67778899884478999999997 77888888  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                       +++.. +..+.+++..+    ...+++.+.+++.|+.+++.
T Consensus        73 -~~~~~-~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp  108 (116)
T PF13380_consen   73 -DEAAA-LGVKAVWLQPG----AESEELIEAAREAGIRVIGP  108 (116)
T ss_dssp             -HHHHH-HT-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred             -HHHHH-cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence             66544 34556666554    55667888888899988853

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.12  E-value=8.6e-06  Score=74.91  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-C-CcEEEEcCCccchhHHHh----CCC--ccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LGA--KYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~----~g~--~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ..++++|||+|..+...++.+... . -+|.+|+|++++.+.+.+    .++  ..+++.++++++||||+.++|.+   
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence            347899999999999999988753 2 479999999988776553    133  33678999999999999998643   


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDT  171 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  171 (359)
                      ..++  +   .+++++|++|+.+++..|..
T Consensus       204 ~P~~--~---~~~l~~G~hi~~iGs~~p~~  228 (315)
T PRK06823        204 EPLL--Q---AEDIQPGTHITAVGADSPGK  228 (315)
T ss_pred             Ccee--C---HHHcCCCcEEEecCCCCccc
Confidence            2444  1   24678999999888766643

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.12  E-value=8e-06  Score=74.73  Aligned_cols=93  Identities=8%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-C-CcEEEEcCCccchhHHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++++|||+|..|...++.+... + -+|.+|+|++++.+.+.+.     |  +..+++.++++++||||+.++|..  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            347899999999999999988763 3 3799999999887766532     3  445789999999999999998743  


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       ..++  +   .+++++|.+|.-++...|.
T Consensus       194 -~P~~--~---~~~l~pg~hV~aiGs~~p~  217 (301)
T PRK06407        194 -TPIF--N---RKYLGDEYHVNLAGSNYPN  217 (301)
T ss_pred             -CcEe--c---HHHcCCCceEEecCCCCCC
Confidence             2444  1   2367899888877766553

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.11  E-value=4.5e-06  Score=69.80  Aligned_cols=96  Identities=24%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--------------------------CCHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------------------PSPD  122 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------------------~~~~  122 (359)
                      ..+.+|.|+|.|+.|..-++.+...|++|+.+|.++++.+.....+....                          ..+.
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            56689999999999999999999999999999998876665554432111                          1245


Q ss_pred             HHhhcCCEEEEeeC-ChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          123 EVAASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       123 ~~~~~aDivi~~~p-~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +.++.+|+||.++- .......++  .++.++.|+++.+|+|+|-
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETTG
T ss_pred             HHHhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEEe
Confidence            66778999997552 233455555  5677788999999999954

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.10  E-value=7.6e-06  Score=76.84  Aligned_cols=68  Identities=26%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CC--ccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA--KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~--~~~~~~~~~~~~aDivi~~~p  136 (359)
                      ++++++.|||+|.||..+|+.|...| .+|++.+|+.++...+++. |.  ...+++.+.+.++|+||.++.
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs  247 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS  247 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence            67899999999999999999999999 5799999999988877654 43  334466677889999999974

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.08  E-value=1.1e-05  Score=74.86  Aligned_cols=92  Identities=14%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHH-HCCC-cEEEEcCCccchhHHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLL-KAGC-DVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~-~~g~-~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++++|||+|.+|+..++.|. ..+. +|.+|+|++++.+.+.+.     ++.  ..+++++++.++|+|+.|+|.+. 
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~-  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET-  206 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence            3468999999999999999997 4664 699999999887766542     433  36788999999999999997532 


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCCh
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                        .++  .   .+.+++|.++..++.-.|
T Consensus       207 --p~i--~---~~~l~~g~~i~~vg~~~p  228 (326)
T TIGR02992       207 --PIL--H---AEWLEPGQHVTAMGSDAE  228 (326)
T ss_pred             --cEe--c---HHHcCCCcEEEeeCCCCC
Confidence              344  1   135789998887765433

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.06  E-value=2.6e-05  Score=72.07  Aligned_cols=66  Identities=18%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHH----h----CC----CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~----~----~g----~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+.+||+|||+|.||..++..+...| .++.++|++++..+...    .    .+    +....+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            34579999999999999999999888 68999999876543211    0    01    12234555 679999999998

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.04  E-value=2.8e-05  Score=71.68  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----hC----C----CccCCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +||+|||+|.||..+|..++..|+ +|.++|++++..+...    +.    +    +....+.+ .+++||+||+++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence            789999999999999999998775 9999999876543211    11    1    11234554 578999999987

>PRK06046 alanine dehydrogenase; Validated

Probab=98.04  E-value=1.2e-05  Score=74.58  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CCC-cEEEEcCCccchhHHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ...+|+|||+|.+|...++.+.. .+. .|.+|||++++.+.+.+.     +  +..+++.+++++ +|+|++|+|..  
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--  204 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--  204 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence            34789999999999999998874 343 688999998877765542     3  344678899887 99999999853  


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       ..++  +   .+++++|++|..++.-.|.
T Consensus       205 -~P~~--~---~~~l~~g~hV~~iGs~~p~  228 (326)
T PRK06046        205 -KPVV--K---AEWIKEGTHINAIGADAPG  228 (326)
T ss_pred             -CcEe--c---HHHcCCCCEEEecCCCCCc
Confidence             2444  1   2357899998888766553

>PRK11579 putative oxidoreductase; Provisional

Probab=98.04  E-value=5.3e-05  Score=71.02  Aligned_cols=107  Identities=16%  Similarity=0.197  Sum_probs=72.8

Q ss_pred             CCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~  144 (359)
                      +.||||||+|.||.. .+..+... ++++. ++|+++++..  .+. +...+++++++++  +.|+|++|+|...+.+.+
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~   81 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA   81 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            368999999999984 56666553 57765 6888765432  222 4556789999996  479999999976655555


Q ss_pred             hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +       ..++.|+.|+.-  -.....+.+++.++.++.++.+
T Consensus        82 ~-------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l  118 (346)
T PRK11579         82 K-------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL  118 (346)
T ss_pred             H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            4       345667766633  2234556677877777766544

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.04  E-value=1.6e-05  Score=73.89  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+.     ++.  .++++++++.++|+|+.++|... 
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-  209 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-  209 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC-
Confidence            34789999999999999998875 45 5799999999887776542     333  36788999999999999997532 


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                        .++   .  ...+++|+.+..++.
T Consensus       210 --p~i---~--~~~l~~g~~v~~vg~  228 (330)
T PRK08291        210 --PIL---K--AEWLHPGLHVTAMGS  228 (330)
T ss_pred             --cEe---c--HHHcCCCceEEeeCC
Confidence              333   1  124678887765544

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.03  E-value=6.8e-05  Score=69.64  Aligned_cols=108  Identities=10%  Similarity=0.150  Sum_probs=79.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCCh----hHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP----ESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~----~~~~~  143 (359)
                      .||||||+ .+|...++.+...  ++++. ++|+++++.+.+.+ .|+..+++.++++.+.|++++++|.+    .+.+-
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            68999999 6899999999875  46654 68999888777665 47778899999999899999998642    22222


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ...++.|..|+..=-....+.+++.+..+++|+.+.
T Consensus        83 a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 A-------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             H-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            2       245677777765533335677788888888777654

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.01  E-value=3.8e-05  Score=80.39  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-Cc-------------EEEEcCCccchhHHHhC--C---Ccc-CCCHHHHh---
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CD-------------VTVWNRTKSKCDPLISL--G---AKY-QPSPDEVA---  125 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~-------------V~~~d~~~~~~~~~~~~--g---~~~-~~~~~~~~---  125 (359)
                      .++++|+|||+|.||+.+++.|.... .+             |.++|+++++.+.+.+.  +   +.. +.+.+++.   
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            35679999999999999999998753 33             88999998777766542  3   222 44655554   


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +++|+|++|+|...+ ..++      ...++.|..+++.+ .......++.+..++.|+.++.
T Consensus       647 ~~~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~  701 (1042)
T PLN02819        647 SQVDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC  701 (1042)
T ss_pred             cCCCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence            579999999986433 2232      24566777888776 4455666777777777776654

>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.01  E-value=0.00013  Score=54.61  Aligned_cols=91  Identities=16%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCC--CcchhHHHHHHH
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLR  312 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~  312 (359)
                      ..++..|++.|.+....++.++|...+|++.|+|..++.+.+......           ...-+.|  ++...-..||..
T Consensus         2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri-----------~~~~~~pg~g~GG~ClpkD~~   70 (96)
T PF00984_consen    2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI-----------GPHYLRPGPGFGGSCLPKDPY   70 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT-----------TSSS-S-SSS--SSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc-----------ccccCCCCCCCCCcchhhhHH
Confidence            358899999999999999999999999999999999999998864221           1112223  344566899999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHH
Q 018213          313 LALGLAESVSQSTPIAAAANELYK  336 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~  336 (359)
                      .+...+++.|.+.++++++.+.-.
T Consensus        71 ~L~~~~~~~g~~~~ll~~~~~~N~   94 (96)
T PF00984_consen   71 ALIYLAKELGYPPQLLEAVININE   94 (96)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhcC
Confidence            999999999999999988877654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.01  E-value=3.3e-05  Score=67.64  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcC----------CccchhHHHhC-C-------CccCCCHHHHh-hcC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVA-ASC  128 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~a  128 (359)
                      +++++|+|.|+|++|+.+++.|.++|.+|+ +.|.          +.+.+....+. |       .... +.++++ .+|
T Consensus        29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~  107 (227)
T cd01076          29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC  107 (227)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence            778999999999999999999999999988 5565          33333222222 2       1111 223332 378


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ||++-|.+...-+.+.+       +.++ =.+|+-.++. |.+ ....+.|.++|+.+++
T Consensus       108 Dvlip~a~~~~i~~~~~-------~~l~-a~~I~egAN~-~~t-~~a~~~L~~rGi~~~P  157 (227)
T cd01076         108 DILIPAALENQITADNA-------DRIK-AKIIVEAANG-PTT-PEADEILHERGVLVVP  157 (227)
T ss_pred             cEEEecCccCccCHHHH-------hhce-eeEEEeCCCC-CCC-HHHHHHHHHCCCEEEC
Confidence            99999986554444444       2332 2344444444 444 5677888899988875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.00  E-value=0.0012  Score=61.19  Aligned_cols=265  Identities=16%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----C-C----------------C----ccCCCHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----L-G----------------A----KYQPSPDEVA  125 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----~-g----------------~----~~~~~~~~~~  125 (359)
                      .+|.|+|+|..+-.+|..+...+. +|-+++|...+.+.+.+    . +                -    ....+.+++.
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~   81 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE   81 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence            468999999999999999998764 68889996655544322    1 1                0    2355777888


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccc-cCCCCCEEEeccC--CChHHHHHHHHHHHhcCCeeec-------CCCCCCC
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLE-------APVSGSK  195 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~--~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~~  195 (359)
                      .+=|.+|+||| .++...++   +++-. .++.=+.+|-+|.  |+-...+.+...+.. .+.++.       ......+
T Consensus        82 g~WdtlILavt-aDAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~-~~EVISFStY~gdTr~~d~~  156 (429)
T PF10100_consen   82 GEWDTLILAVT-ADAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGP-DAEVISFSTYYGDTRWSDGE  156 (429)
T ss_pred             ccccEEEEEec-hHHHHHHH---HhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCC-CceEEEeecccccceeccCC
Confidence            88899999997 66777777   44432 2333233443333  333333333333321 223332       1111111


Q ss_pred             cc-----ccCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHH-----------------H-------
Q 018213          196 KP-----AEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------V-------  244 (359)
Q Consensus       196 ~~-----~~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~-----------------~-------  244 (359)
                      +.     .....-+++.+  ++....+++..+++.+|..+..+..+-.++...+.                 .       
T Consensus       157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~k  236 (429)
T PF10100_consen  157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPK  236 (429)
T ss_pred             CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcc
Confidence            11     00011122222  25667789999999999887777664434333211                 1       


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-------ccchhhhhc---------------c
Q 018213          245 ------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLK---------------G  290 (359)
Q Consensus       245 ------------n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-------~~s~~~~~~---------------~  290 (359)
                                  ..++.-|.....|.+.+..+.|+++=.+.+.+....       ....-.+.+               .
T Consensus       237 YvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRY  316 (429)
T PF10100_consen  237 YVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRY  316 (429)
T ss_pred             eEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHh
Confidence                        235556788999999999999998877777776520       100000000               0


Q ss_pred             cccc---------cCCCC--------CC-------cchhH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          291 PSMI---------ESLYP--------TA-------FPLKH----QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       291 ~~~~---------~~~~~--------~~-------~~~~~----~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ..++         +|.|.        ..       ..++.    -..-+..+..+++.+|+++|+++.+.+.|+.....
T Consensus       317 tsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~  395 (429)
T PF10100_consen  317 TSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ  395 (429)
T ss_pred             hhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence            0111         11110        00       01222    12336888999999999999999999999888764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.99  E-value=3.6e-05  Score=56.64  Aligned_cols=65  Identities=20%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +.+++++|+|+|.+|+.++..+... +.+|.+|||                          |+++.+++.+..+.+    
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~----   70 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE----   70 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH----
Confidence            5668999999999999999999998 578999988                          999999975433322    


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                        +....++++.++++++
T Consensus        71 --~~~~~~~~~~~v~~~a   86 (86)
T cd05191          71 --EATAKINEGAVVIDLA   86 (86)
T ss_pred             --HHHHhcCCCCEEEecC
Confidence              1134567888888763

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.99  E-value=3.1e-05  Score=63.57  Aligned_cols=79  Identities=24%  Similarity=0.353  Sum_probs=56.4

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++.|||-+. +|+.++..|...|..|+.++.+.              .++++.+++|||||.+++.+..    + 
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i-   93 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I-   93 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B-
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c-
Confidence            38889999999975 99999999999999999987653              2567788999999999976533    3 


Q ss_pred             ccccccccCCCCCEEEeccCCCh
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                       .   .+++++|+++||++....
T Consensus        94 -~---~~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   94 -K---ADWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             -----GGGS-TTEEEEE--CEEE
T ss_pred             -c---cccccCCcEEEecCCccc
Confidence             1   235899999999976544

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.98  E-value=2.1e-05  Score=61.94  Aligned_cols=89  Identities=20%  Similarity=0.310  Sum_probs=56.9

Q ss_pred             eEEEEc-CChhhHHHHHHHHHCC-Cc-EEEEcCCccchhHHHhC--------CCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           73 RIGFLG-MGIMGTPMAQNLLKAG-CD-VTVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        73 ~igiiG-~G~iG~~ia~~l~~~g-~~-V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ||+||| +|.+|+.+.+.|.+.- ++ +.+++++.+.-+.+...        .....+...+.+.++|+|++|+| ....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP-HGAS   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC-HHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc-hhHH
Confidence            699999 8999999999999843 34 44566655222223221        11122222344589999999997 5555


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ....   +.+   +++|..+||.|...
T Consensus        80 ~~~~---~~~---~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   80 KELA---PKL---LKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHH---HHH---HHTTSEEEESSSTT
T ss_pred             HHHH---HHH---hhCCcEEEeCCHHH
Confidence            5555   333   57888999997654

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.98  E-value=5.4e-05  Score=65.81  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCc----------cchhHHHhC-CCccCC-----CHHHHh-hcCCE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCDV  130 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aDi  130 (359)
                      +.+++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+.          +..+...+. ++....     +.++++ .+|||
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV  100 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI  100 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence            7789999999999999999999999885 55677766          443333322 122111     123332 37999


Q ss_pred             EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++-|.+.+.-+.+..       ..++ =.+|+-.++++. +. ...+.|.++|+.+++
T Consensus       101 lipaA~~~~i~~~~a-------~~l~-a~~V~e~AN~p~-t~-~a~~~L~~~Gi~v~P  148 (217)
T cd05211         101 FAPCALGNVIDLENA-------KKLK-AKVVAEGANNPT-TD-EALRILHERGIVVAP  148 (217)
T ss_pred             EeeccccCccChhhH-------hhcC-ccEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence            999986543332222       3333 234554444443 33 567788888877765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.95  E-value=4e-05  Score=70.78  Aligned_cols=66  Identities=24%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH--H---Hh---CC----CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP--L---IS---LG----AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~--~---~~---~g----~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+.+||+|||+|.||..+|..++..|+ +|.++|++++..+.  +   ..   .+    +....+. +.+++||+||++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455899999999999999999998895 89999998875321  1   00   11    2223465 4678999999976

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=4.3e-05  Score=68.53  Aligned_cols=78  Identities=26%  Similarity=0.343  Sum_probs=63.9

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-|. +|+.++..|...|..|+++.+..              .++.+.++++||||.+++.+..    +
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~----v  216 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF----I  216 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc----c
Confidence            347899999999998 99999999999999999997642              3677889999999999976542    3


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         .  .+.+++|+++||++..
T Consensus       217 ---~--~~~vk~gavVIDvGin  233 (285)
T PRK10792        217 ---P--GEWIKPGAIVIDVGIN  233 (285)
T ss_pred             ---c--HHHcCCCcEEEEcccc
Confidence               1  1457899999999743

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.93  E-value=6.6e-05  Score=65.79  Aligned_cols=107  Identities=17%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC---cEEEEcCC----ccch-------hHHHhC-CCccC-CCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRT----KSKC-------DPLISL-GAKYQ-PSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d~~----~~~~-------~~~~~~-g~~~~-~~~~~~~~~aDivi  132 (359)
                      +++++|.|+|+|.+|+.++..|...|.   +|+++||+    .++.       ..+.+. +.... .++.+.++++|+||
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlI  102 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFI  102 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEE
Confidence            677899999999999999999999997   49999998    3432       222221 11111 36767888999999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      -++|...     +  +++....|.++.++++.+  .|.. +.+.+...+.|..
T Consensus       103 gaT~~G~-----~--~~~~l~~m~~~~ivf~ls--nP~~-e~~~~~A~~~ga~  145 (226)
T cd05311         103 GVSRPGV-----V--KKEMIKKMAKDPIVFALA--NPVP-EIWPEEAKEAGAD  145 (226)
T ss_pred             eCCCCCC-----C--CHHHHHhhCCCCEEEEeC--CCCC-cCCHHHHHHcCCc
Confidence            9987322     2  233445666788888887  3333 3355555555654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.93  E-value=7.6e-05  Score=60.01  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++++++|.|+|- ...|..++..|.+.|.+|+.++++.              .++++.+++||||+.+++.++    ++ 
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~----~i-   85 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPE----KV-   85 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCC----cc-
Confidence            378899999997 6689999999999999999998643              256778899999999997652    34 


Q ss_pred             ccccccccCCCCCEEEeccCCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                       +   .+++++|++++|++...
T Consensus        86 -~---~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          86 -P---TEWIKPGATVINCSPTK  103 (140)
T ss_pred             -C---HHHcCCCCEEEEcCCCc
Confidence             1   24689999999987655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.93  E-value=1.4e-05  Score=72.39  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.++++.|.|+|..|+.+|.+++..|.+|+++..+|-+.-+..=.|..+. ..+|+...+||+|.++-    .++++  .
T Consensus       207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi--~  279 (420)
T COG0499         207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVI--R  279 (420)
T ss_pred             ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCcc--C
Confidence            67899999999999999999999999999999988755444333466655 78899999999998884    24455  4


Q ss_pred             ccccccCCCCCEEEeccCCCh
Q 018213          149 HGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      .+.+..||+|+++.|.+.-..
T Consensus       280 ~eh~~~MkDgaIl~N~GHFd~  300 (420)
T COG0499         280 KEHFEKMKDGAILANAGHFDV  300 (420)
T ss_pred             HHHHHhccCCeEEecccccce
Confidence            556678999999999875543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.93  E-value=1.2e-05  Score=74.17  Aligned_cols=95  Identities=17%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ...+++|||+|..|...++.+.. ++ -+|.+|+|++++.+.+.+.    +  +..+++.++++++||||+.|+|.....
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~  206 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA  206 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence            34689999999999999998865 55 4799999999877766542    3  345789999999999999998744311


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       .++  +   ..++++|++|+.++...+.
T Consensus       207 -P~~--~---~~~l~~g~hi~~iGs~~~~  229 (313)
T PF02423_consen  207 -PVF--D---AEWLKPGTHINAIGSYTPG  229 (313)
T ss_dssp             -ESB------GGGS-TT-EEEE-S-SSTT
T ss_pred             -ccc--c---HHHcCCCcEEEEecCCCCc
Confidence             444  1   2468899999988876663

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.92  E-value=2.5e-05  Score=75.03  Aligned_cols=66  Identities=14%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             CeEEEEcCChhhHHHHH--HH----HHCCCcEEEEcCCccchhHHHhC------------CCccCCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLISL------------GAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~--~l----~~~g~~V~~~d~~~~~~~~~~~~------------g~~~~~~~~~~~~~aDivi~  133 (359)
                      +||+|||.|.+|.+.+.  .+    ...|++|.+||+++++.+.....            .+..+.++++++++||+|++
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998665  23    44578999999998765543321            23346688899999999999


Q ss_pred             eeCC
Q 018213          134 MLAD  137 (359)
Q Consensus       134 ~~p~  137 (359)
                      ++|.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9973

linked to 3D####ucture

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=4.1e-05  Score=69.17  Aligned_cols=78  Identities=23%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||.|. +|+.++..|...|.+|+++++..              .++.+.++++|+||.+++.+.    .+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v  216 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI  216 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC
Confidence            348889999999998 99999999999999999998732              245566789999999997543    33


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .   .+.+++|++++|++-.
T Consensus       217 --~---~~~lk~gavViDvg~n  233 (283)
T PRK14192        217 --K---KDWIKQGAVVVDAGFH  233 (283)
T ss_pred             --C---HHHcCCCCEEEEEEEe
Confidence              1   2357899999999644

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.92  E-value=3.2e-05  Score=74.99  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc--CC---------------C----------H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------P  121 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~---------------~----------~  121 (359)
                      ..+.++.|+|+|.+|...+..+...|..|+++|+++++.+.....|...  .+               +          +
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            4457999999999999999999999999999999988777666555432  00               1          2


Q ss_pred             HHHhhcCCEEEEee--CChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          122 DEVAASCDVTFAML--ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       122 ~~~~~~aDivi~~~--p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .+.++++|+||.++  |..+ ...++  .++..+.||+|.+|||++..
T Consensus       242 ~e~~~~~DIVI~TalipG~~-aP~Li--t~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKP-APKLI--TEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHhCCCCEEEECcccCCCC-CCeee--hHHHHhhCCCCCEEEEeeeC
Confidence            34467899999888  1110 11233  25556889999999999653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.92  E-value=1.8e-05  Score=75.46  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C-Cc--cCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-AK--YQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g-~~--~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +.+++|.|||+|.||+.++..|...|. +|++++|+.++.+.+.+. + ..  ..+++.+.+.++|+||.|++.+
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence            677899999999999999999999995 799999998887777653 2 22  2345567788999999999754

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.91  E-value=2.4e-05  Score=72.72  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      -.+++|||+|..+...++.+.. +. -+|.+|+|++++.+.+.+    .+  +..+++.++++++||||+.++|. ....
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S-~~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTAD-KTNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC-CCCC
Confidence            3689999999999999887764 33 479999999988766553    23  34568999999999999999963 2222


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChH
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      .++   +  .+++++|++|.-+++-.|.
T Consensus       208 Pvl---~--~~~lkpG~hV~aIGs~~p~  230 (346)
T PRK07589        208 TIL---T--DDMVEPGMHINAVGGDCPG  230 (346)
T ss_pred             cee---c--HHHcCCCcEEEecCCCCCC
Confidence            344   1  2467999998877765553

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.89  E-value=8.5e-05  Score=68.49  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh----C-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ..++||+|||+|.+|..+|..+...|.  ++.++|++.++.+....    .     ......+..+.+++||+||++.-.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            456899999999999999999998886  79999998776443221    0     112222333557999999997743

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.88  E-value=9e-05  Score=68.21  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC--------C--Ccc-CCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G--AKY-QPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g--~~~-~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +||+|||+|.+|+.+|..|+..|  .+|.++|+++++.+.....        +  ... ..+. +.+++||+||++...+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence            37999999999999999999999  5899999988765543321        1  111 2344 4478999999999653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04148 hypothetical protein; Provisional

Probab=97.87  E-value=7.5e-05  Score=59.14  Aligned_cols=92  Identities=17%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-----CCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++++|.+||+| -|..+|..|++.|++|++.|.++..++...+.+...     +....++-+++|+|...-| +.++..-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-p~el~~~   93 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-PRDLQPF   93 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-CHHHHHH
Confidence            45789999999 999999999999999999999998877766655432     2333466778888888776 4454444


Q ss_pred             hcccccccccCCCCCEEEeccC
Q 018213          145 ACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +   -++......+-+|...+.
T Consensus        94 ~---~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         94 I---LELAKKINVPLIIKPLSG  112 (134)
T ss_pred             H---HHHHHHcCCCEEEEcCCC
Confidence            4   345455544444444433

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.87  E-value=2.4e-05  Score=73.77  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=67.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHH-CC--CcEEEEcCCccchhHHHh----C--C---CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLK-AG--CDVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~-~g--~~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      -++++|||+|..+...++.+.. +.  -+|.+|+|++++.+.+.+    .  +   +..+++.++++++||||+.|++..
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            3689999999999999999876 32  379999999988766543    1  2   445789999999999999998643


Q ss_pred             h---HHHHHhcccccccccCCCCCEEEeccC
Q 018213          139 E---SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       139 ~---~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .   ....++  +   ..++++|++|+..+.
T Consensus       235 ~~~~s~~Pv~--~---~~~lkpG~hv~~ig~  260 (379)
T PRK06199        235 TGDPSTYPYV--K---REWVKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence            2   223444  1   236789998875433

>PRK10206 putative oxidoreductase; Provisional

Probab=97.87  E-value=0.00011  Score=68.82  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CeEEEEcCChhhH-HHHHHHHH--CCCcEE-EEcCCccchhHHHhCC-CccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLGMGIMGT-PMAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG~G~iG~-~ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~  144 (359)
                      .||||||+|.++. ..+..+..  .+++|. ++|+++++.+...+.+ +..+++.++++.  +.|+|++++|...+.+.+
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~   81 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   81 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence            5799999999875 34554533  256765 6898875543233333 567789999996  579999999976665555


Q ss_pred             hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  118 (344)
T PRK10206         82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV  118 (344)
T ss_pred             H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence            4       345556655432  2234566778888887776654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.85  E-value=5.5e-05  Score=72.75  Aligned_cols=111  Identities=19%  Similarity=0.312  Sum_probs=71.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC--------C--CcE-EEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA--------G--CDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ..+|||+|+|.||+.+++.|.+.        |  .+| .++++++++.......+...+++.++++.  +.|+|+.+++.
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~   82 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG   82 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence            47899999999999999888543        3  343 46788765543222223456778999986  46999999864


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeee
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .......+      ...++.|..|+...-. .....++|.+..+++++.+.
T Consensus        83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~  127 (426)
T PRK06349         83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY  127 (426)
T ss_pred             chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence            33323333      3557788888844221 12334667777777777543

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.84  E-value=7.8e-05  Score=67.69  Aligned_cols=118  Identities=15%  Similarity=0.059  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C----CccCC---CHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivi~~~p~~~  139 (359)
                      .+++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. +    +....   +..+.+.++|+||.|+|...
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            567899999999999999999999997 699999998887776542 1    11122   22345578999999998653


Q ss_pred             HHHH-Hhcccccc--cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          140 SAMD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       140 ~~~~-~~~~~~~~--~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .... .+......  ...+.++.+++|+.-.+..  ..+.+..++.|...++
T Consensus       203 ~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~  252 (282)
T TIGR01809       203 PADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP--TPLVAIVSAAGWRVIS  252 (282)
T ss_pred             CCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC--CHHHHHHHHCCCEEEC
Confidence            2211 11000000  0123466788888644333  2466666666655544

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.84  E-value=7.9e-05  Score=62.65  Aligned_cols=91  Identities=12%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C--CccC--CC----HHHHhhcCCEEEEeeCC
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G--AKYQ--PS----PDEVAASCDVTFAMLAD  137 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g--~~~~--~~----~~~~~~~aDivi~~~p~  137 (359)
                      +++++++.|||-+. +|+.+|..|...|..|+++|.+.-..  +... .  -..+  .+    +.+.+++|||||.+++.
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~  136 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS  136 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence            48899999999855 89999999999999999997543211  0000 0  0001  12    67888999999999987


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +.-.   +  .   .+.+++|+++||++...
T Consensus       137 ~~~~---i--~---~d~ik~GavVIDVGi~~  159 (197)
T cd01079         137 PNYK---V--P---TELLKDGAICINFASIK  159 (197)
T ss_pred             CCCc---c--C---HHHcCCCcEEEEcCCCc
Confidence            6430   2  1   23578999999997553

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=8.1e-05  Score=66.75  Aligned_cols=78  Identities=21%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||.++ +|+.++..|...|..|++++...              .++.+..++|||||.++..+.    ++
T Consensus       160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i  221 (287)
T PRK14176        160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI  221 (287)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc
Confidence            347899999999998 99999999999999999998532              256778899999999987653    23


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .   ...+++|+++||++..
T Consensus       222 --~---~~~vk~gavVIDvGin  238 (287)
T PRK14176        222 --K---ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             --C---HHHcCCCcEEEEeccc
Confidence              1   1357899999999754

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.83  E-value=0.00011  Score=67.13  Aligned_cols=115  Identities=11%  Similarity=0.047  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCc---cchhHHHh----CC----CccC--C---CHHHHhhcCCEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKYQ--P---SPDEVAASCDVT  131 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g----~~~~--~---~~~~~~~~aDiv  131 (359)
                      ++++++.|+|+|.+|++++..|...|.+ |++++|+.   ++.+.+.+    .+    +...  .   +.++.+..+|+|
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            5678899999999999999999999986 99999986   44444332    11    1111  1   223345678999


Q ss_pred             EEeeCChhHH--HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          132 FAMLADPESA--MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       132 i~~~p~~~~~--~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |.++|....-  ....   -.-...+.++.+++|+.-.+..  ..+.+..++.|...++
T Consensus       204 INaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~  257 (289)
T PRK12548        204 VNATLVGMKPNDGETN---IKDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVG  257 (289)
T ss_pred             EEeCCCCCCCCCCCCC---CCcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeC
Confidence            9999854321  1110   0012346778889998655443  2466666676666554

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.83  E-value=2.4e-05  Score=68.05  Aligned_cols=107  Identities=12%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             CCeEEEEcCChhhHHHHHHH--HHCCCcEE-EEcCCccchhHHHhCC--CccCCCHHHHhhc--CCEEEEeeCChhH---
Q 018213           71 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLISLG--AKYQPSPDEVAAS--CDVTFAMLADPES---  140 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l--~~~g~~V~-~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~--aDivi~~~p~~~~---  140 (359)
                      ..+|+|||+|.+|..+++.+  ...|+++. ++|+++++..... .|  +...+++++++++  .|++++|+|....   
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            46899999999999999863  35678776 5787765443211 12  2233466777754  9999999986543   


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK  180 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~  180 (359)
                      ...+.  ...+..-+....+.+++.++..++..++...+.
T Consensus       163 ~~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~  200 (213)
T PRK05472        163 ADRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ  200 (213)
T ss_pred             HHHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence            22222  223333344455566666665555555555543

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.83  E-value=7.3e-05  Score=68.63  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             EEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH----HHhC--------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LISL--------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~~--------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|||+|.||..+|..++..|. +|+++|++++..+.    +.+.        .+....+.+ .+++||+||++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence            6899999999999999998876 99999998764321    1111        112234544 5789999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.83  E-value=1.9e-05  Score=70.32  Aligned_cols=95  Identities=25%  Similarity=0.397  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCc------cCCCHHHHhhcCCEEEEee--CChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK------YQPSPDEVAASCDVTFAML--ADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~------~~~~~~~~~~~aDivi~~~--p~~~  139 (359)
                      ..+-+|.|||.|-+|..-|+.....|.+|++.|++.+++..+... +.+      ....+++.+.++|+||-++  |.. 
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga-  244 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA-  244 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC-
Confidence            455789999999999999999999999999999998887766553 221      1235678889999999776  432 


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ....++  .++....|+||+++||++-
T Consensus       245 kaPkLv--t~e~vk~MkpGsVivDVAi  269 (371)
T COG0686         245 KAPKLV--TREMVKQMKPGSVIVDVAI  269 (371)
T ss_pred             CCceeh--hHHHHHhcCCCcEEEEEEE
Confidence            333333  2677789999999999953

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.82  E-value=3.5e-05  Score=62.34  Aligned_cols=65  Identities=14%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhC----------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||+ |++|..+|..|...+.  ++.++|+++++.+.....          .........+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            68999999 9999999999988774  799999986654332210          12223355567789999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.81  E-value=5e-05  Score=66.54  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--CCCcc---CCC----HHHH-hhcCCEEEEeeCChhHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY---QPS----PDEV-AASCDVTFAMLADPESA  141 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~---~~~----~~~~-~~~aDivi~~~p~~~~~  141 (359)
                      |++.|||+|.+|..+|+.|.+.|++|++.++++++.++...  .....   -.+    ++++ +.++|+++.++. ...+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~-~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG-NDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC-CCHH
Confidence            67999999999999999999999999999999988777443  22211   112    2233 457899999985 4444


Q ss_pred             HHHh
Q 018213          142 MDVA  145 (359)
Q Consensus       142 ~~~~  145 (359)
                      .-++
T Consensus        80 N~i~   83 (225)
T COG0569          80 NSVL   83 (225)
T ss_pred             HHHH
Confidence            4444

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.81  E-value=0.00023  Score=72.64  Aligned_cols=112  Identities=11%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccc--------cCC
Q 018213          131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG  201 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--------~~~  201 (359)
                      ||+|+| ...+..++   +++.+.++++++|.|+++.+....+++.+.+......|++ ||+.|.+..-        ..+
T Consensus         1 vila~P-v~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~   76 (673)
T PRK11861          1 VLLAAP-VAQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG   76 (673)
T ss_pred             CEEEcC-HHHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence            689998 78889998   8888889999999999999987777776665443356887 9999988554        366


Q ss_pred             ceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       202 ~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                      ..++++..   +.+.++.+.++++.+|.+++.+.+..+...+.+++..
T Consensus        77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShl  124 (673)
T PRK11861         77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHL  124 (673)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhH
Confidence            77777753   6788999999999999999999888777777766654

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=8.3e-05  Score=66.71  Aligned_cols=79  Identities=23%  Similarity=0.300  Sum_probs=62.7

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.+++|.|||-| .+|+.+|..|...|..|+++....              .++.+.+++||+||.+++.+.-    +
T Consensus       153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~----i  214 (285)
T PRK14191        153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL----I  214 (285)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc----C
Confidence            34789999999999 899999999999999999986432              2456788999999999976542    3


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        .   ...+++|+++||++...
T Consensus       215 --~---~~~vk~GavVIDvGi~~  232 (285)
T PRK14191        215 --K---ASMVKKGAVVVDIGINR  232 (285)
T ss_pred             --C---HHHcCCCcEEEEeeccc
Confidence              1   13468999999997543

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.78  E-value=0.00014  Score=65.77  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccch--hHHHhCCCcc-CCCHHHHhh-----cCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivi~~~p~~  138 (359)
                      +++.+|||||+|+||+.+...+.+. +.++. ++|++++..  +...+.|+.. +++.+++++     +.|+|++++|..
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            3458899999999999988877754 46655 678877532  3334457765 468899885     478899999754


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .+.+...       ...+.|..+||.+...
T Consensus        82 ~H~e~a~-------~a~eaGk~VID~sPA~  104 (302)
T PRK08300         82 AHVRHAA-------KLREAGIRAIDLTPAA  104 (302)
T ss_pred             HHHHHHH-------HHHHcCCeEEECCccc
Confidence            4433332       2356788898886543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.76  E-value=5.6e-05  Score=73.58  Aligned_cols=96  Identities=20%  Similarity=0.306  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CC---------------HH---------
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PS---------------PD---------  122 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------~~---------  122 (359)
                      ..+.+|.|+|+|.+|...+..++..|.+|+++|+++++.+...+.|.+..  +.               .+         
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            45789999999999999999999999999999999988887777776521  11               01         


Q ss_pred             -HHhhcCCEEEEeeCChhH-HHHHhcccccccccCCCCCEEEeccC
Q 018213          123 -EVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       123 -~~~~~aDivi~~~p~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                       +.++.+|+||.|+..+.. ...++  .++..+.|++|.+|++++-
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence             112469999999853221 11121  1444578999999999975

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.75  E-value=0.00016  Score=65.22  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=62.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHH-CCCcEE-EEcCCccch--hHHHhCCCcc-CCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivi~~~p~~~~~~~~  144 (359)
                      ++|||||+|+||+.++..+.. .++++. ++++++++.  +...+.|+.. +.+.++++.  +.|+|++++|...+.+..
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            579999999999999877765 356665 578887653  3334457654 457888885  478899999866554444


Q ss_pred             hcccccccccCCCCCEEEeccCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .       ..+..|..+++.+..
T Consensus        82 ~-------~al~aGk~VIdekPa   97 (285)
T TIGR03215        82 R-------LLAELGKIVIDLTPA   97 (285)
T ss_pred             H-------HHHHcCCEEEECCcc
Confidence            3       345678888877543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.74  E-value=0.00025  Score=68.73  Aligned_cols=110  Identities=18%  Similarity=0.247  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcC----ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~----G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      .+.++|+|||.    |++|..+.+.|.+.|+  +|+.+++....+     .|+..+.+++|+-...|++++++| ++.+.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~   78 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVP   78 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHH
Confidence            45688999999    8899999999999998  576666654322     378888899998878899999997 77778


Q ss_pred             HHhcccccccccCCCCCEEEeccCCCh-------HHHHHHHHHHHhcCCeeecC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~-------~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .++   ++..+. .-+.++|- +.+..       ...+++.+..++.|+++++.
T Consensus        79 ~~l---~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP  127 (447)
T TIGR02717        79 QVV---EECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP  127 (447)
T ss_pred             HHH---HHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence            887   555442 23333332 33322       23567888888888888763

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.74  E-value=5.8e-05  Score=71.90  Aligned_cols=107  Identities=27%  Similarity=0.339  Sum_probs=67.6

Q ss_pred             EEEEcCChhhHHHHHHHHHCC-C-cEEEEcCCccchhHHHhC----CCc-----c--CCCHHHHhhcCCEEEEeeCChhH
Q 018213           74 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GAK-----Y--QPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g-~-~V~~~d~~~~~~~~~~~~----g~~-----~--~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      |.|+|+|.+|+.+++.|.+.+ + +|++.||+.++.+.+.+.    .+.     .  ..++.++++++|+||.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            789999999999999999876 4 899999999887776542    111     1  123567889999999999733 4


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ...++      ...+..|...||++- .......+.+..++.|+.++.
T Consensus        80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~  120 (386)
T PF03435_consen   80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP  120 (386)
T ss_dssp             HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred             hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence            44444      233556777887322 233344555555556665543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.72  E-value=0.00012  Score=65.81  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=48.1

Q ss_pred             EEEEcC-ChhhHHHHHHHHHCC----CcEEEEcCCccchhHHHh-----------CCCccCCCHHHHhhcCCEEEEee
Q 018213           74 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-----------LGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        74 igiiG~-G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~-----------~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      |+|||+ |.+|..++..|...|    .+|.++|+++++.+....           ..+...+++.+.+++||+|+++.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence            589999 999999999999888    689999998866543221           12233456678889999999965

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.72  E-value=5.6e-05  Score=62.32  Aligned_cols=65  Identities=23%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||+ |.+|+.+++.+...||+|+.+-|++.+.......     .+.-.+++.+.+..-|+||.+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            78999997 9999999999999999999999999876543111     11112233456677888888773

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.72  E-value=0.00014  Score=56.90  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             cCChhhHHHHHHHHHC----CCcEE-EEcCC--ccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhccc
Q 018213           78 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        78 G~G~iG~~ia~~l~~~----g~~V~-~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      |+|+||+.+++.|...    +++|. +++|+  ..........+.....++++++.  ..|+||-|.+ ++.....+   
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~---   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY---   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence            8999999999999876    45654 57777  11111111224566779999988  8999999975 55555554   


Q ss_pred             ccccccCCCCCEEEeccCCChH---HHHHHHHHHHhcCCeee
Q 018213          149 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASFL  187 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~~~~  187 (359)
                         ...++.|..||..+.+...   ..++|.+..++.|.++.
T Consensus        77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~  115 (117)
T PF03447_consen   77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY  115 (117)
T ss_dssp             ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred             ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence               3456788899977665444   45666666666676553

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.71  E-value=0.00012  Score=62.86  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~  103 (359)
                      ++..+|+|+|+|.+|+.+|..|+..|+ +++++|++
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            677899999999999999999999998 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00013  Score=65.23  Aligned_cols=78  Identities=21%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||.+ ..|+.+|..|...|..|+.+.++.              .++.+.+++||+||.+++.+    +++
T Consensus       148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv  209 (279)
T PRK14178        148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI  209 (279)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence            34889999999998 899999999999999999987643              25778889999999999755    234


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .++   .+++|+++||++..
T Consensus       210 --~~~---~vk~GavVIDVgi~  226 (279)
T PRK14178        210 --TPD---MVKPGATVIDVGIN  226 (279)
T ss_pred             --CHH---HcCCCcEEEEeecc
Confidence              222   36999999999754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.70  E-value=0.00039  Score=59.86  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCC-CccCC--CHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQP--SPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~~--~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +++++|.|||.|.+|...++.|...|++|+++++.... ...+.+.+ +....  -.++.+.++|+||.++. .+++...
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~-d~elN~~   86 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN-DPRVNEQ   86 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC-CHHHHHH
Confidence            78899999999999999999999999999999876432 23333332 22111  11234678999999985 4555554


Q ss_pred             h
Q 018213          145 A  145 (359)
Q Consensus       145 ~  145 (359)
                      +
T Consensus        87 i   87 (202)
T PRK06718         87 V   87 (202)
T ss_pred             H
Confidence            4

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.69  E-value=0.00016  Score=67.49  Aligned_cols=88  Identities=9%  Similarity=0.073  Sum_probs=56.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV  130 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi  130 (359)
                      +||||+|+|+||+.+++.+... ++++.+ ++++++....+.+                   .++....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            6899999999999999998764 577664 5555432222211                   123344567788888999


Q ss_pred             EEEeeCChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      |+.|+|.. ......   +   ..++.|..+|+.+.
T Consensus        82 VIdaT~~~-~~~e~a---~---~~~~aGk~VI~~~~  110 (341)
T PRK04207         82 VVDATPGG-VGAKNK---E---LYEKAGVKAIFQGG  110 (341)
T ss_pred             EEECCCch-hhHHHH---H---HHHHCCCEEEEcCC
Confidence            99999743 333333   2   23445666665544

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00018  Score=64.34  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.++..+.-    +
T Consensus       153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i  214 (281)
T PRK14183        153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I  214 (281)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c
Confidence            34889999999998 799999999999999999886432              2567788999999999976542    2


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        .   .+++++|+++||++...
T Consensus       215 --~---~~~vk~gavvIDvGin~  232 (281)
T PRK14183        215 --T---EDMVKEGAIVIDIGINR  232 (281)
T ss_pred             --C---HHHcCCCcEEEEeeccc
Confidence              1   23578999999997543

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00021  Score=64.05  Aligned_cols=79  Identities=24%  Similarity=0.268  Sum_probs=63.0

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+.+++|||||.+++.+.-    +
T Consensus       153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i  214 (284)
T PRK14170        153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V  214 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c
Confidence            35889999999985 589999999999999999986532              2567888999999999986642    3


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        +   .+.+++|+++||++...
T Consensus       215 --~---~~~vk~GavVIDvGin~  232 (284)
T PRK14170        215 --K---KDYIKPGAIVIDVGMDR  232 (284)
T ss_pred             --C---HHHcCCCCEEEEccCcc
Confidence              1   23578999999997554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.68  E-value=0.0001  Score=67.82  Aligned_cols=66  Identities=20%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhH----HHhCC-----Cc-cCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISLG-----AK-YQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~g-----~~-~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      |||+|||+|.+|..+|..|+..|  .+|.++|+++++.+.    +....     .. ...+. +.+++||+|+++++.+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            57999999999999999999999  589999998765542    22110     01 12344 5578999999999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.68  E-value=0.00016  Score=65.08  Aligned_cols=113  Identities=23%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC----CCc-cCCCHHHH--hhcCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GAK-YQPSPDEV--AASCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----g~~-~~~~~~~~--~~~aDivi~~~p~~~~  140 (359)
                      .+++++.|+|+|..+++++..|+..|. +|++++|+.++.+++.+.    +.. ......++  ..++|+||.++|....
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~  203 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA  203 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC
Confidence            457899999999999999999999995 799999999888777653    110 11122222  1258999999987644


Q ss_pred             HHH---HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMD---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~---~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      -..   .+   .  ...++++.++.|+--.+..+  .+.+..++.|...++
T Consensus       204 ~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id  247 (283)
T COG0169         204 GPEGDSPV---P--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID  247 (283)
T ss_pred             CCCCCCCC---c--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence            331   22   1  35578899999986555433  466777777766555

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.65  E-value=0.00019  Score=65.00  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-----CC---ccCC--CHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA---KYQP--SPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~---~~~~--~~~~~~~~aDivi~~~p~  137 (359)
                      .+++++.|+|+|..|++++..|...|. +|++++|+.++.+.+.+.     +.   ...+  +..+.+..+|+||-++|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            556899999999999999999999996 699999998887776542     11   1111  123455689999999985


Q ss_pred             hhHHH-H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          138 PESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       138 ~~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ...-. . .+   .  ...+.++.++.|+.-.+..+  .+.+..++.|...++
T Consensus       205 Gm~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  250 (283)
T PRK14027        205 GMPAHPGTAF---D--VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD  250 (283)
T ss_pred             CCCCCCCCCC---C--HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence            43211 0 01   0  12356777888886544332  466666666665554

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.65  E-value=0.00041  Score=63.82  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=46.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC-------CCccCCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +||+|||+|.+|..+|..|...|.  ++.++|++.++.+...    ..       .+....+.++ +++||+|+++.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita   79 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA   79 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence            689999999999999999988774  7999999876543221    11       1222346665 78999999966

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.62  E-value=0.00059  Score=61.98  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=80.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHH---CCCcEE-EEcCCccchhHHHhC-C---CccCCCHHHHhhcC--CEEEEeeCChhH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLK---AGCDVT-VWNRTKSKCDPLISL-G---AKYQPSPDEVAASC--DVTFAMLADPES  140 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~---~g~~V~-~~d~~~~~~~~~~~~-g---~~~~~~~~~~~~~a--Divi~~~p~~~~  140 (359)
                      .-|+||+|+|.|++-+++.|..   .+|+|+ +++|+.++...+++. +   .+.+.+.+|++++.  |+|.+..|.+.+
T Consensus         6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH   85 (351)
T KOG2741|consen    6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH   85 (351)
T ss_pred             eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence            3679999999999999999864   357765 678888877777654 3   36688999999865  999999987666


Q ss_pred             HHHHhcccccccccCCCC-CEEEecc-CCChHHHHHHHHHHHhcCCeeecC
Q 018213          141 AMDVACGKHGAASGMGPG-KGYVDVS-TVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~-~~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .+-+.       ..+..+ .+++.-- .....+.+.+.++.+.+|+.+.++
T Consensus        86 ~evv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg  129 (351)
T KOG2741|consen   86 YEVVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG  129 (351)
T ss_pred             HHHHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence            55443       112222 3555432 235567788999999888777653

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.62  E-value=0.0011  Score=63.97  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      ++|.|||.|.+|.++|+.|.+.|++|+++|+++..........-......+...+++|++|.+.+.+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~   70 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK   70 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence            6799999999999999999999999999998765433211000011223344457789988877544

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.61  E-value=0.00029  Score=63.65  Aligned_cols=79  Identities=27%  Similarity=0.391  Sum_probs=63.2

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-+ .+|+.++..|...|..|+++....              .++++.+++|||||.++..+    +++
T Consensus       163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk~----~~i  224 (299)
T PLN02516        163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQA----MMI  224 (299)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----Ccc
Confidence            45889999999985 589999999999999999996532              35778899999999999765    333


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        .   .+++++|+++||++...
T Consensus       225 --~---~~~vk~gavVIDvGin~  242 (299)
T PLN02516        225 --K---GDWIKPGAAVIDVGTNA  242 (299)
T ss_pred             --C---HHHcCCCCEEEEeeccc
Confidence              1   24588999999997543

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.014  Score=52.64  Aligned_cols=266  Identities=14%  Similarity=0.168  Sum_probs=151.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh---C-----------------CC----ccCCCHHHHh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS---L-----------------GA----KYQPSPDEVA  125 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~---~-----------------g~----~~~~~~~~~~  125 (359)
                      +.++.++|+|...-.+|.-+...| +++-.++|-..+.+.+.+   .                 |-    ....+++++.
T Consensus         4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~   83 (431)
T COG4408           4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV   83 (431)
T ss_pred             ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence            467999999999999999999887 678888875444333332   1                 10    1234677777


Q ss_pred             hcCCEEEEeeCChhHHHHHhccccccc-ccCCC--CCEEEeccCCChHHHHHHHHHHHhcCCeeecCC-------CCCCC
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAA-SGMGP--GKGYVDVSTVDGDTSKLINGHIKATGASFLEAP-------VSGSK  195 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~-~~l~~--~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~-------~~~~~  195 (359)
                      .+-+-+|+||| .++..+++   +++- +.++.  ..++|.-+-|+-.....+...+. ..+.++...       .+..+
T Consensus        84 ~dwqtlilav~-aDaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~  158 (431)
T COG4408          84 GDWQTLILAVP-ADAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAE  158 (431)
T ss_pred             chhheEEEEee-cHHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeeccc
Confidence            78899999997 56777777   4332 22333  33444443444433333433332 233333311       11111


Q ss_pred             ccc-----cCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHH-----------------HHH-------
Q 018213          196 KPA-----EDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK-----------------LVV-------  244 (359)
Q Consensus       196 ~~~-----~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~k-----------------l~~-------  244 (359)
                      +..     .-..-+.+.+  ++....+.+..+++..|..+..+..+-.++...                 .+.       
T Consensus       159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~  238 (431)
T COG4408         159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQ  238 (431)
T ss_pred             CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCc
Confidence            110     0011122222  356667788899998888776665543333222                 111       


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--ccchhh-----hhc---------------c
Q 018213          245 ------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA--ISAPMY-----SLK---------------G  290 (359)
Q Consensus       245 ------------n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~--~~s~~~-----~~~---------------~  290 (359)
                                  ..++.-+.....|.+++..+.|+.+-.+.+.++...  ....++     +.+               .
T Consensus       239 yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRY  318 (431)
T COG4408         239 YVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRY  318 (431)
T ss_pred             eeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHH
Confidence                        245555677889999999999998888888776531  000011     000               0


Q ss_pred             cccccCCCCC--------Cc----------------chhH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          291 PSMIESLYPT--------AF----------------PLKH----QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       291 ~~~~~~~~~~--------~~----------------~~~~----~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ..++-+.|.+        .|                .++.    -..-+..+.-++...++++|.++.+..-|+.+..+
T Consensus       319 talLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~  397 (431)
T COG4408         319 TALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALKA  397 (431)
T ss_pred             HHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            0111111110        01                1111    12225788889999999999999999999998875

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00037  Score=62.47  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=63.4

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||- ..+|+.++..|...|..|++++...              .++.+..++|||||.+++.+.-    +
T Consensus       155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i  216 (284)
T PRK14177        155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I  216 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c
Confidence            3488999999997 5589999999999999999987532              2567888999999999986643    3


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        .   .+.+++|+++||++...
T Consensus       217 --~---~~~ik~gavVIDvGin~  234 (284)
T PRK14177        217 --K---ADWISEGAVLLDAGYNP  234 (284)
T ss_pred             --C---HHHcCCCCEEEEecCcc
Confidence              1   23578999999997643

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00036  Score=62.51  Aligned_cols=79  Identities=24%  Similarity=0.293  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||-+ .+|+.++..|.+.|..|+++....              .++.+..++|||||.+++.+.    ++
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~----~i  214 (282)
T PRK14182        153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAE----LV  214 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc
Confidence            34889999999975 589999999999999999986532              256678899999999998653    23


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        .   .+++++|+++||++...
T Consensus       215 --~---~~~ik~gaiVIDvGin~  232 (282)
T PRK14182        215 --K---GAWVKEGAVVIDVGMNR  232 (282)
T ss_pred             --C---HHHcCCCCEEEEeecee
Confidence              1   23578999999997443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00038  Score=62.59  Aligned_cols=79  Identities=23%  Similarity=0.305  Sum_probs=62.8

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||- ..+|+.++..|...|..|+++.+..              .++.+..++|||||.++..+.    ++
T Consensus       151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i  212 (287)
T PRK14173        151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI  212 (287)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc
Confidence            3478999999997 5689999999999999999887532              256788899999999998663    23


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        +   .+++++|+++||++...
T Consensus       213 --~---~~~vk~GavVIDVGin~  230 (287)
T PRK14173        213 --T---PEMVRPGAVVVDVGINR  230 (287)
T ss_pred             --C---HHHcCCCCEEEEccCcc
Confidence              1   23578999999997543

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00036  Score=63.04  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++.|||- ..+|+.++..|...|..|+++....              .++.+.+++|||||.+++.+.    ++ 
T Consensus       155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i-  215 (297)
T PRK14186        155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPN----LI-  215 (297)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc-
Confidence            478999999997 5589999999999999999986432              256788899999999998664    23 


Q ss_pred             ccccccccCCCCCEEEeccCCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                       +   .+++++|+++||++...
T Consensus       216 -~---~~~ik~gavVIDvGin~  233 (297)
T PRK14186        216 -G---AEMVKPGAVVVDVGIHR  233 (297)
T ss_pred             -C---HHHcCCCCEEEEecccc
Confidence             1   23578999999997544

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00037  Score=62.36  Aligned_cols=77  Identities=25%  Similarity=0.340  Sum_probs=62.0

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++.|||- ..+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    + 
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~----i-  215 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF----I-  215 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c-
Confidence            478999999997 5589999999999999999997532              2567888999999999986643    3 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                       +   .+++++|+++||++..
T Consensus       216 -~---~~~ik~gavVIDvGin  232 (278)
T PRK14172        216 -D---EEYVKEGAIVIDVGTS  232 (278)
T ss_pred             -C---HHHcCCCcEEEEeecc
Confidence             1   2357899999999643

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00038  Score=62.41  Aligned_cols=78  Identities=21%  Similarity=0.334  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    +
T Consensus       152 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i  213 (282)
T PRK14169        152 IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I  213 (282)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence            34789999999975 589999999999999999986432              2567888999999999987643    3


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +   .+++++|+++||++..
T Consensus       214 --~---~~~vk~GavVIDvGin  230 (282)
T PRK14169        214 --G---ADAVKPGAVVIDVGIS  230 (282)
T ss_pred             --C---HHHcCCCcEEEEeecc
Confidence              1   2357899999999753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.55  E-value=0.00075  Score=55.60  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC-CccC-CCH-HHHhhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PSP-DEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~-~~~-~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +++++|.|||.|.+|...++.|.+.|++|+++++.  ..+++.+.+ +... ..+ ++-+.++|+|+.++. ++++...+
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e~N~~i   87 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHAVNMMV   87 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHHHHHHH
Confidence            88899999999999999999999999999999643  334444322 1111 011 123578999999884 55555544

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.54  E-value=0.00016  Score=64.05  Aligned_cols=94  Identities=16%  Similarity=0.062  Sum_probs=71.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ..++.+.|.|+|.+|+.-|+.|+.+|..|++...+|=..-+..=+|.+++ +++|++++.||++.++-    -++++  .
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii--~  284 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDII--T  284 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----Ccchh--h
Confidence            45566777799999999999999999999998887643322233466655 89999999999988763    23444  2


Q ss_pred             ccccccCCCCCEEEeccCCCh
Q 018213          149 HGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      .+.+..||.++++.|++-...
T Consensus       285 ~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  285 GEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHHHhCcCCcEEeccccccc
Confidence            556788999999999866543

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.00042  Score=62.16  Aligned_cols=78  Identities=23%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-+ .+|+.++..|...|..|+++.+..              .++.+..++|||||.++..+.-    +
T Consensus       153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i  214 (282)
T PRK14166        153 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L  214 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c
Confidence            34889999999975 589999999999999999987543              2577888999999999986643    2


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +   .+.+++|+++||++..
T Consensus       215 --~---~~~vk~GavVIDvGin  231 (282)
T PRK14166        215 --R---SDMVKEGVIVVDVGIN  231 (282)
T ss_pred             --C---HHHcCCCCEEEEeccc
Confidence              1   1357899999999743

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.00043  Score=62.20  Aligned_cols=78  Identities=22%  Similarity=0.377  Sum_probs=62.1

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.++..+.    ++
T Consensus       155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~----~i  216 (288)
T PRK14171        155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPL----KL  216 (288)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCC----cc
Confidence            34889999999985 589999999999999999887432              357788899999999998664    33


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .   .+.+++|+++||++-.
T Consensus       217 --~---~~~vk~GavVIDvGin  233 (288)
T PRK14171        217 --T---AEYFNPESIVIDVGIN  233 (288)
T ss_pred             --C---HHHcCCCCEEEEeecc
Confidence              1   2357899999999743

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.53  E-value=0.00038  Score=63.75  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    +
T Consensus       210 i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v  271 (345)
T PLN02897        210 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V  271 (345)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence            34889999999975 589999999999999999886532              2567888999999999986642    3


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +   .+++++|+++||++..
T Consensus       272 --~---~d~vk~GavVIDVGin  288 (345)
T PLN02897        272 --R---GSWLKPGAVVIDVGTT  288 (345)
T ss_pred             --C---HHHcCCCCEEEEcccc
Confidence              1   2357899999999754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.53  E-value=0.00037  Score=65.10  Aligned_cols=91  Identities=24%  Similarity=0.325  Sum_probs=57.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHhC-C-Cc-----cCCCHHH-HhhcCCEEEEeeCChhH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLISL-G-AK-----YQPSPDE-VAASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~~-g-~~-----~~~~~~~-~~~~aDivi~~~p~~~~  140 (359)
                      ++|+|||+ |.+|+.+++.|... ++++.. +++. +..+.+.+. + ..     .+.+.++ ...++|+|++|+|.. .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~   80 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-V   80 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-H
Confidence            78999996 99999999999876 567654 5543 222222211 0 11     1222322 446799999999854 4


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      ..+++   ..   .++.|..|||.|...-.
T Consensus        81 ~~~~v---~~---a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         81 SMDLA---PQ---LLEAGVKVIDLSADFRL  104 (343)
T ss_pred             HHHHH---HH---HHhCCCEEEECCcccCC
Confidence            44444   22   23578999999876544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.51  E-value=0.00026  Score=68.86  Aligned_cols=67  Identities=25%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCccC-------CCHHHH-hhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQ-------PSPDEV-AASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~aDivi~~~p~~  138 (359)
                      |+|.|+|+|.+|+.+++.|...|++|+++++++++.+.+.+ .++...       ..++++ +.++|.|+++++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~   76 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD   76 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence            57999999999999999999999999999999888777655 333221       123334 56899999999754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.51  E-value=0.00015  Score=62.49  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++..+|.|||+|.+|+.+++.|+..|. +++++|++.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            677899999999999999999999997 899999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.50  E-value=0.0004  Score=64.96  Aligned_cols=93  Identities=20%  Similarity=0.295  Sum_probs=59.9

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-C----CC--ccCC--CHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----GA--KYQP--SPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~--~~~~--~~~~~~~~aDivi~~~p~~~  139 (359)
                      ++|+|||+ |.+|..+++.|... ++++. +++++....+.+.+ .    +.  ..+.  +.++++.++|++++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            57999998 99999999999976 56777 44644322222221 1    11  0122  4556666899999999844 


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHH
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  171 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  171 (359)
                      ...++.   ..+   ...|..|||.|...-.+
T Consensus        80 ~s~~~~---~~~---~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        80 VSAELA---PEL---LAAGVKVIDLSADFRLK  105 (346)
T ss_pred             HHHHHH---HHH---HhCCCEEEeCChhhhcC
Confidence            445554   332   34689999998664433

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.50  E-value=0.00047  Score=61.80  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++.|||- ..+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    + 
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i-  215 (282)
T PRK14180        155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I-  215 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C-
Confidence            488999999997 5589999999999999999987532              2566778999999999987643    3 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                       +   ...+++|+++||++..
T Consensus       216 -~---~~~vk~gavVIDvGin  232 (282)
T PRK14180        216 -T---ADMVKEGAVVIDVGIN  232 (282)
T ss_pred             -C---HHHcCCCcEEEEeccc
Confidence             1   1357899999999743

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.50  E-value=0.00045  Score=62.09  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||- ..+|+.++..|...|..|+++....              .++.+.+++|||||.+++.+.    ++
T Consensus       154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~----~i  215 (284)
T PRK14190        154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPK----LI  215 (284)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC
Confidence            3488999999997 5689999999999999999986432              267788999999999997654    33


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        +.   +.+++|+++||++...
T Consensus       216 --~~---~~ik~gavVIDvGi~~  233 (284)
T PRK14190        216 --TA---DMVKEGAVVIDVGVNR  233 (284)
T ss_pred             --CH---HHcCCCCEEEEeeccc
Confidence              22   3468999999997543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.50  E-value=0.00086  Score=67.08  Aligned_cols=87  Identities=17%  Similarity=0.295  Sum_probs=62.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHH-----hhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivi~~~p~~~~~~~  143 (359)
                      -.|-|+|+|++|+.+++.|.+.|++|++.|.++++.+.+.+.|....   .+.++.     ++++|.++++++++.+...
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            45889999999999999999999999999999998888877665321   112233     3478999999987666555


Q ss_pred             HhcccccccccCCCCCEEE
Q 018213          144 VACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi  162 (359)
                      ++   ..... ..++..++
T Consensus       498 iv---~~~~~-~~~~~~ii  512 (558)
T PRK10669        498 IV---ASARE-KRPDIEII  512 (558)
T ss_pred             HH---HHHHH-HCCCCeEE
Confidence            54   22222 33455555

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.49  E-value=0.00051  Score=61.91  Aligned_cols=78  Identities=24%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    +
T Consensus       156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i  217 (294)
T PRK14187        156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V  217 (294)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence            34889999999984 589999999999999999987532              2567888999999999987643    2


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .   .+++++|+++||++..
T Consensus       218 --~---~~~ik~gaiVIDVGin  234 (294)
T PRK14187        218 --K---YSWIKKGAIVIDVGIN  234 (294)
T ss_pred             --C---HHHcCCCCEEEEeccc
Confidence              1   2357899999999643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.49  E-value=0.00066  Score=68.32  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHH-----hhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivi~~~p~~~~~~  142 (359)
                      ..+|.|+|+|++|+.+++.|.+.|+++++.|.++++.+.+.+.|....   .+..++     ++++|.+++++++++...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            356999999999999999999999999999999999888877765331   122233     357999999998766665


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      .++   .. .....|+..++
T Consensus       480 ~i~---~~-~r~~~p~~~Ii  495 (601)
T PRK03659        480 KIV---EL-CQQHFPHLHIL  495 (601)
T ss_pred             HHH---HH-HHHHCCCCeEE
Confidence            554   22 23344555555

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.48  E-value=0.00067  Score=52.71  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=58.6

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhHHHHHh
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivi~~~p~~~~~~~~~  145 (359)
                      |.|+|+|.+|..+++.|.+.+.+|++.+++++..+.+.+.|....    .+.+.+    +.++|.++++++.+.....+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            569999999999999999977799999999998888888775431    122222    357899999997655444443


Q ss_pred             cccccccccCCCCCEEE
Q 018213          146 CGKHGAASGMGPGKGYV  162 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi  162 (359)
                          ..+..+.+...++
T Consensus        81 ----~~~r~~~~~~~ii   93 (116)
T PF02254_consen   81 ----LLARELNPDIRII   93 (116)
T ss_dssp             ----HHHHHHTTTSEEE
T ss_pred             ----HHHHHHCCCCeEE
Confidence                2233344544444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.48  E-value=0.00059  Score=62.06  Aligned_cols=115  Identities=14%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCcc---chhHHHhC-C----C-ccCCCH------HHHhhcCCEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G----A-KYQPSP------DEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~---~~~~~~~~-g----~-~~~~~~------~~~~~~aDivi  132 (359)
                      .+++++.|+|+|..+++++..|...|. +|++++|+++   +.+.+.+. +    . ....++      .+.+.++|+||
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI  201 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT  201 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence            567899999999999999999998886 7999999853   55554432 1    1 011222      23456789999


Q ss_pred             EeeCChhHH--HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          133 AMLADPESA--MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       133 ~~~p~~~~~--~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .++|....-  ....   ..-...++++.++.|+.-.+.. + .+.+..+++|...++
T Consensus       202 NaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~  254 (288)
T PRK12749        202 NGTKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHM-T-KLLQQAQQAGCKTID  254 (288)
T ss_pred             ECCCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCcc-C-HHHHHHHHCCCeEEC
Confidence            999864321  1111   0011246678889888654432 2 566777777766655

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.48  E-value=0.00025  Score=65.59  Aligned_cols=112  Identities=15%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ++++++|.|+|+ |.||+.+++.|.. .| .++++++|+.++...+.+. +.....++++.+.++|+|+.+...+.   .
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~  228 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---G  228 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---C
Confidence            378899999998 8999999999975 45 5899999987776665443 11122367788899999998774322   2


Q ss_pred             H-hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          144 V-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       144 ~-~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                      + +  +.   ..++++.+++|.+.---++. .+    ...++.+++..+.
T Consensus       229 ~~I--~~---~~l~~~~~viDiAvPRDVd~-~v----~~~~V~v~~gG~V  268 (340)
T PRK14982        229 VEI--DP---ETLKKPCLMIDGGYPKNLDT-KV----QGPGIHVLKGGIV  268 (340)
T ss_pred             CcC--CH---HHhCCCeEEEEecCCCCCCc-cc----CCCCEEEEeCCcc
Confidence            2 3  22   24578899999976544432 22    2256666665443

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.48  E-value=0.00043  Score=61.43  Aligned_cols=81  Identities=23%  Similarity=0.310  Sum_probs=64.3

Q ss_pred             cccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           66 EADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        66 ~~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ..+++++++.|||-++ +|+.++..|...++.|+++....              .++.+..++||||+.++-.+.    +
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~----~  212 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPH----F  212 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCcc----c
Confidence            3457999999999977 69999999999999999998643              256678899999999996543    3


Q ss_pred             hcccccccccCCCCCEEEeccCCCh
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      +  +   .+++++|+++||++....
T Consensus       213 i--~---~d~vk~gavVIDVGinrv  232 (283)
T COG0190         213 I--K---ADMVKPGAVVIDVGINRV  232 (283)
T ss_pred             c--c---cccccCCCEEEecCCccc
Confidence            3  1   246899999999965433

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.48  E-value=0.00057  Score=61.34  Aligned_cols=79  Identities=16%  Similarity=0.232  Sum_probs=62.7

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHH--CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .++.++++.|||- ..+|+.++..|..  .+..|+++....              .++.+.+++|||||.+++.+.    
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGkp~----  215 (284)
T PRK14193        154 VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGVAH----  215 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCCcC----
Confidence            3478999999997 5689999999988  688999987532              367788999999999998764    


Q ss_pred             HhcccccccccCCCCCEEEeccCCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ++  .   ..++++|+++||++...
T Consensus       216 ~i--~---~~~ik~GavVIDvGin~  235 (284)
T PRK14193        216 LV--T---ADMVKPGAAVLDVGVSR  235 (284)
T ss_pred             cc--C---HHHcCCCCEEEEccccc
Confidence            23  1   23578999999997544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.47  E-value=0.0002  Score=65.86  Aligned_cols=67  Identities=12%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             EEEEcCChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCEEE
Q 018213           74 IGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDivi  132 (359)
                      |||+|+|+||+.+++.+... +++|.+ .|.+++....+..                   .++....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999998754 567664 5655553223322                   12334557899999999999


Q ss_pred             EeeCChhH
Q 018213          133 AMLADPES  140 (359)
Q Consensus       133 ~~~p~~~~  140 (359)
                      .|+|....
T Consensus        81 e~Tp~~~~   88 (333)
T TIGR01546        81 DATPGGIG   88 (333)
T ss_pred             ECCCCCCC
Confidence            99986543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.47  E-value=0.0017  Score=58.84  Aligned_cols=114  Identities=14%  Similarity=0.085  Sum_probs=79.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~  145 (359)
                      ++.||.|.|. |.+|..+.+.|.++|++ .+|-.+|.+ .++  -.|+..+.+++|+-..  .|+.++++| .+.+.+++
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l   82 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI   82 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH
Confidence            3467999996 99999999999999997 444444431 111  1378888999999876  899999998 67777777


Q ss_pred             cccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                         ++..+.=-+..+|+  |.+ ...+.+++.+..++.|+++++...+
T Consensus        83 ---~e~~~~gvk~avI~--s~Gf~~~~~~~l~~~a~~~girvlGPNc~  125 (291)
T PRK05678         83 ---LEAIDAGIDLIVCI--TEGIPVLDMLEVKAYLERKKTRLIGPNCP  125 (291)
T ss_pred             ---HHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence               55544222333333  444 3344458888888899999875443

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.47  E-value=0.0013  Score=59.50  Aligned_cols=114  Identities=14%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHhcc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~~~  147 (359)
                      +.+|.|.|. |.+|..+-+.+...|++ .++..+|.+-.. .-.|+..+.+++|+...  .|+.++++| ...+.+++  
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l--   80 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI--   80 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence            467999995 99999999999999998 556666652111 12478889999998876  699999998 67777777  


Q ss_pred             cccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                       ++....=-+ ..+|- +.+ ...+.+++.+..++.|+++++...+
T Consensus        81 -~e~~~~Gvk-~avIi-s~Gf~e~~~~~l~~~a~~~girilGPNc~  123 (286)
T TIGR01019        81 -FEAIDAGIE-LIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPNCP  123 (286)
T ss_pred             -HHHHHCCCC-EEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCCc
Confidence             555442222 33332 444 3344678888888889998875443

ATP citrate lyases appear to form an outgroup.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.44  E-value=0.00058  Score=62.87  Aligned_cols=78  Identities=22%  Similarity=0.388  Sum_probs=62.5

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||- ..+|+.++..|...+..|+++....              .++.+.+++|||||.++..+.-    +
T Consensus       227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i  288 (364)
T PLN02616        227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V  288 (364)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C
Confidence            3488999999997 5589999999999999999986532              2677888999999999986643    3


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +   .+++++|+++||++..
T Consensus       289 --~---~d~vK~GAvVIDVGIn  305 (364)
T PLN02616        289 --R---GSWIKPGAVVIDVGIN  305 (364)
T ss_pred             --C---HHHcCCCCEEEecccc
Confidence              1   2357899999999643

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.44  E-value=0.00027  Score=65.04  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=45.5

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~  134 (359)
                      ++.+++|.|||+|.||..+++.|.+.|. +|++++|+.... .+.+..    ....+...++||||.|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~  233 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG  233 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence            3778999999999999999999999995 699999987531 111100    0111345689999986

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.42  E-value=0.0008  Score=64.42  Aligned_cols=113  Identities=14%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE-cC----------CccchhHHHhC------------CCccCCCHHH
Q 018213           67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-NR----------TKSKCDPLISL------------GAKYQPSPDE  123 (359)
Q Consensus        67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~-d~----------~~~~~~~~~~~------------g~~~~~~~~~  123 (359)
                      .+++++||+|.|+|++|+.+|+.|.+.|.+|+++ |.          +.+.+....+.            +.... +.++
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~  306 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGS  306 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcc
Confidence            3478899999999999999999999999998876 62          22222222111            11111 3333


Q ss_pred             Hhh-cCCEEEEeeCChhHHHHHhcccccccccCCCCC-EEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       124 ~~~-~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++. +|||++-|.....-+.+..   ..+.   ++++ +|+-.++++.  +.+..+.|.++|+.+++
T Consensus       307 i~~~d~DVliPaAl~n~It~~~a---~~i~---~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP  365 (445)
T PRK09414        307 PWSVPCDIALPCATQNELDEEDA---KTLI---ANGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP  365 (445)
T ss_pred             ccccCCcEEEecCCcCcCCHHHH---HHHH---HcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence            333 7999999886444333333   2221   1233 4555555544  34566788899988875

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.42  E-value=0.002  Score=62.84  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=70.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch-----hHHHhCCCccC--CCHHHHhhcCCEEEEeeCC---h
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAMLAD---P  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~---~  138 (359)
                      +.+++|+|+|+|..|.++|+.|.+.|++|+++|+++...     +.+.+.|+...  ....+.+.++|+||....-   .
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~   91 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDS   91 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCc
Confidence            556889999999999999999999999999999865321     23555576553  2223445789999886311   1


Q ss_pred             hHHHHHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213          139 ESAMDVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       139 ~~~~~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      +.......      +..+++....+..+| |.-|.|+..+..-+...|...+..
T Consensus        92 p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~  145 (458)
T PRK01710         92 PELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYK  145 (458)
T ss_pred             hHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence            22222210      011111122222344 433556666666666777665543

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.40  E-value=0.00079  Score=60.49  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=62.0

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .+++++++.|||-+ .+|+.++..|...    +..|+++....              .++.+.+++|||||.+++.+.  
T Consensus       149 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~--  212 (287)
T PRK14181        149 IPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL--  212 (287)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC--
Confidence            34889999999975 5899999999988    78899886532              257788899999999998663  


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        ++  .   .+++++|+++||++...
T Consensus       213 --~i--~---~~~ik~GavVIDvGin~  232 (287)
T PRK14181        213 --FI--K---EEMIAEKAVIVDVGTSR  232 (287)
T ss_pred             --cc--C---HHHcCCCCEEEEecccc
Confidence              23  1   23578999999997543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.38  E-value=0.00063  Score=62.52  Aligned_cols=87  Identities=20%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC------CHHHHhhcCCEEEEeeCChhHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+.+|+|+|+|.+|..-.+.++..|.+|+++|+++++.+...+.|...+-      ..+++-+.+|+++.++| +.....
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~  244 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP  244 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence            46889999999999999999999999999999999887766665543211      11122122677776665 444333


Q ss_pred             HhcccccccccCCCCCEEEec
Q 018213          144 VACGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~  164 (359)
                      .+       ..++++..++-+
T Consensus       245 ~l-------~~l~~~G~~v~v  258 (339)
T COG1064         245 SL-------KALRRGGTLVLV  258 (339)
T ss_pred             HH-------HHHhcCCEEEEE
Confidence            33       344555554444

>PLN02477 glutamate dehydrogenase

Probab=97.37  E-value=0.00094  Score=63.39  Aligned_cols=110  Identities=18%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHHhC--------CCccCCCHHHH-hhc
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL--------GAKYQPSPDEV-AAS  127 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~  127 (359)
                      ++++++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+          .+.+....+.        +.... +.+++ ..+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~  281 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP  281 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence            4788999999999999999999999999988 55654          2222121111        11112 22333 347


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |||++-|.- .    ..|  +++-.+.+ +=.+|+-.++++. + .+..+.|.++|+.+++
T Consensus       282 ~DvliP~Al-~----~~I--~~~na~~i-~ak~I~egAN~p~-t-~ea~~~L~~rGI~~~P  332 (410)
T PLN02477        282 CDVLIPAAL-G----GVI--NKENAADV-KAKFIVEAANHPT-D-PEADEILRKKGVVVLP  332 (410)
T ss_pred             ccEEeeccc-c----ccC--CHhHHHHc-CCcEEEeCCCCCC-C-HHHHHHHHHCCcEEEC
Confidence            999987752 2    233  23333334 2345665556555 3 3566888899988875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.37  E-value=0.00031  Score=53.51  Aligned_cols=72  Identities=21%  Similarity=0.171  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +++++|.|||.|.+|..=++.|.+.|.+|+++++..   . ..+..++. ....++.+.++|+|+.+++ ++.+...+
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~-~~~~~i~~~~~~~~~~l~~~~lV~~at~-d~~~n~~i   77 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---E-FSEGLIQLIRREFEEDLDGADLVFAATD-DPELNEAI   77 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---H-HHHTSCEEEESS-GGGCTTESEEEE-SS--HHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---h-hhhhHHHHHhhhHHHHHhhheEEEecCC-CHHHHHHH
Confidence            778999999999999999999999999999999875   1 11122221 1123345678899998885 44444444

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.37  E-value=0.0019  Score=63.01  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~  134 (359)
                      +++++|.|||.|..|.+.|+.|.+.|++|.++|..+.....+.+.|+.......+-+.++|+||..
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s   72 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS   72 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence            556789999999999999999999999999999765444444555665432222334678988863

>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases

Probab=97.37  E-value=0.0018  Score=51.49  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=78.6

Q ss_pred             EEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213          205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  284 (359)
Q Consensus       205 ~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~  284 (359)
                      +.+.++++..+.+..++..+|.+++.+.... -.....+.-+..+....++..+..++++.|++.++..+++.      |
T Consensus         4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~-r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P   76 (132)
T PF10728_consen    4 FAIEGDEEALEVLQELAKELGGRPFEIDSEQ-RALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P   76 (132)
T ss_dssp             EEEEESHHHHHHHHHHHHHTTSEEEE--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred             EEEecCHHHHHHHHHHHHHhCCceEEeCHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence            3445599999999999999999999886644 45555555555566666777888889999999977665554      4


Q ss_pred             hhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018213          285 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  337 (359)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  337 (359)
                      +.+.....+.+.......|.+..+.|.+.+.+..+...-..|-...+++.+..
T Consensus        77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~  129 (132)
T PF10728_consen   77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR  129 (132)
T ss_dssp             HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            44443444433332233455666778888888887765533555555554443

; PDB: 3D1L_A 2I76_A 3DFU_A.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.36  E-value=0.0017  Score=57.47  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC-----cc-----chhH---HHh-CC------------CccCCC
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS-----KCDP---LIS-LG------------AKYQPS  120 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~-----~~-----~~~~---~~~-~g------------~~~~~~  120 (359)
                      +++++||.|.|+|++|+..|+.|.+.|.+|+ +.|.+     ++     .+..   ..+ .+            .+.. +
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~  113 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E  113 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence            3788999999999999999999999999988 55521     11     1111   011 11            2222 3


Q ss_pred             HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCC-CCC-EEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGK-GYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~-~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .++++ .+|||++-|.-     ..++  +.+-.+.++ .++ +|+..+++ |.+. +..+.|.++|+.+++
T Consensus       114 ~~~~~~~~~DIliPcAl-----~~~I--~~~na~~i~~~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvP  175 (254)
T cd05313         114 GKKPWEVPCDIAFPCAT-----QNEV--DAEDAKLLVKNGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAP  175 (254)
T ss_pred             CcchhcCCCcEEEeccc-----cccC--CHHHHHHHHHcCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEEC
Confidence            33433 47999987752     3333  233333442 233 45544444 4444 567888899988875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.36  E-value=0.00045  Score=65.58  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             CeEEEEcCChhhHHH-HHHHHHCCCcEEEEcCCccchhHHHhCCCc---c---------------C--CCHHH---Hhhc
Q 018213           72 GRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y---------------Q--PSPDE---VAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~i-a~~l~~~g~~V~~~d~~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~  127 (359)
                      |||.++|+|+||+++ +..|.+.|++|+++|+++..++.+.++|..   .               .  .+.++   .+.+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~   80 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE   80 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence            679999999999955 888899999999999887777777665531   0               1  02122   3347


Q ss_pred             CCEEEEeeCChhHHHHHh
Q 018213          128 CDVTFAMLADPESAMDVA  145 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~  145 (359)
                      +|+|++++ .+..++.+.
T Consensus        81 ~dlvt~~v-~~~~~~s~~   97 (381)
T PRK02318         81 ADLVTTAV-GPNILPFIA   97 (381)
T ss_pred             CCEEEeCC-CcccchhHH
Confidence            89998888 444444443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.34  E-value=0.0013  Score=60.44  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             EEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC---------CCcc--CCCHHHHhhcCCEEEEeeCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL---------GAKY--QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~---------g~~~--~~~~~~~~~~aDivi~~~p~  137 (359)
                      |+|||+|.+|..+|..++..|  .++.++|++.++.+.....         ....  ..+ .+.+++||+||++...
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence            589999999999999999888  5899999988765443321         0111  234 4577899999999864

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02602 lactate dehydrogenase

Probab=97.34  E-value=0.0011  Score=61.92  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh----C-----CCccC--CCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQ--PSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~--~~~~~~~~~aDivi~~~p  136 (359)
                      +||+|||+|++|..+|..+...|.  ++.++|+++++.+...-    .     .....  .+.++ +++||+||++.-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence            699999999999999999988775  79999998765432221    0     12222  34444 789999999863

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.33  E-value=0.0026  Score=51.51  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhHH
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPESA  141 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~~~~~  141 (359)
                      +|.|||+|.+|..+++.|...|. +++++|.+.-....+..+        |-.......+.++  ..++-+...+.....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            48999999999999999999997 699999764333322211        2222212222222  123433333221111


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      ..       ....+++-.++|++... ......+.+.+++.++.++++...+
T Consensus        81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g  124 (143)
T cd01483          81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            10       01234566788877655 5556678888888899998877665

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.33  E-value=0.00074  Score=63.80  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCC-------CccCCCHH-HHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPD-EVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~-~~~~~aDivi~~~p~~  138 (359)
                      ...+||+|+|+ |.+|+.+.+.|... +++|..+.++...-+.+....       .....+.+ +.++++|+|++++| .
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp-~  114 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP-H  114 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC-H
Confidence            34579999997 99999999999987 678888766543322222111       11111222 22478999999997 4


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      ....+++   +.    +..|..|||.|...-.+.
T Consensus       115 ~~s~~i~---~~----~~~g~~VIDlSs~fRl~~  141 (381)
T PLN02968        115 GTTQEII---KA----LPKDLKIVDLSADFRLRD  141 (381)
T ss_pred             HHHHHHH---HH----HhCCCEEEEcCchhccCC
Confidence            4555555   33    346889999986654433

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.32  E-value=0.0018  Score=63.66  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC--CHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivi~~~  135 (359)
                      ..+++|.|+|+|..|.+.++.|...|++|+++|+.+...+.+.+.|+....  ...+.++++|+||.+-
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp   78 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP   78 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence            345789999999999999999999999999999876555555555765432  2345567899988865

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.31  E-value=0.0005  Score=51.66  Aligned_cols=72  Identities=25%  Similarity=0.288  Sum_probs=52.5

Q ss_pred             CeEEEEcCChhhHHHHHHH-HHCCCc-EEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNL-LKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l-~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~  145 (359)
                      .++.|+|+|++|++++..+ ...|+. +.++|.++++..... .|+....+.+++.+.  .|+-++++| +....+++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~   79 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA   79 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence            5699999999999998644 456766 456888887544211 266777788888776  999999998 56666666

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.31  E-value=0.00073  Score=62.19  Aligned_cols=65  Identities=20%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCc--cchhH----HHh----CC----CccCCCHHHHhhcCCEEEEe
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDP----LIS----LG----AKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~--~~~~~----~~~----~g----~~~~~~~~~~~~~aDivi~~  134 (359)
                      |||+|+|+ |.+|..++..|...|+  +|.++|+++  ++.+.    +.+    .+    +....+.+ .+++||+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            68999997 9999999999999886  499999954  33221    111    11    11233444 58999999999


Q ss_pred             eCC
Q 018213          135 LAD  137 (359)
Q Consensus       135 ~p~  137 (359)
                      ...
T Consensus        80 ag~   82 (309)
T cd05294          80 AGV   82 (309)
T ss_pred             cCC
Confidence            853

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.30  E-value=0.0008  Score=62.85  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC----------CCcEE-EEcCCcc----------chhHHHhC-CC-c------cCCCHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLISL-GA-K------YQPSPD  122 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~----------g~~V~-~~d~~~~----------~~~~~~~~-g~-~------~~~~~~  122 (359)
                      .+|+|+|+|+||+.+++.+...          +.+|. ++|++..          +...+.+. +. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            5799999999999999998765          35544 5565321          11111111 21 1      124778


Q ss_pred             HHhh--cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee
Q 018213          123 EVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL  187 (359)
Q Consensus       123 ~~~~--~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~  187 (359)
                      +++.  +.|+|+.|+|...+..+..  .+-....+..|..||....... ...+++.+..++.+..+.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~  148 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR  148 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence            8874  5799999998543321111  0112345678888885432221 234567777777776554

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.27  E-value=0.0013  Score=59.45  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=61.2

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .++.+++|.|||- ..+|+.++..|...    +..|+++.+..              .++.+.+++|||||.++..+.- 
T Consensus       157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~-  221 (297)
T PRK14168        157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNL-  221 (297)
T ss_pred             CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCc-
Confidence            3488999999997 56899999999987    68898886432              2577888999999999976542 


Q ss_pred             HHHhcccccccccCCCCCEEEeccCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         +  +   .+++++|+++||++..
T Consensus       222 ---i--~---~~~ik~gavVIDvGin  239 (297)
T PRK14168        222 ---V--K---PEWIKPGATVIDVGVN  239 (297)
T ss_pred             ---c--C---HHHcCCCCEEEecCCC
Confidence               3  1   2357899999999754

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.26  E-value=0.0013  Score=59.20  Aligned_cols=78  Identities=29%  Similarity=0.422  Sum_probs=61.2

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .++.++++.|||-+ .+|+.++..|...    +..|+++....              .++.+..++|||||.+++.+.- 
T Consensus       153 i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~-  217 (293)
T PRK14185        153 IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF-  217 (293)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc-
Confidence            34889999999985 5899999999987    57899886432              2677888999999999986643 


Q ss_pred             HHHhcccccccccCCCCCEEEeccCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         +  .   .+++++|+++||++..
T Consensus       218 ---i--~---~~~vk~gavVIDvGin  235 (293)
T PRK14185        218 ---V--K---ADMVKEGAVVIDVGTT  235 (293)
T ss_pred             ---c--C---HHHcCCCCEEEEecCc
Confidence               3  1   2457899999999754

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.26  E-value=0.00034  Score=53.63  Aligned_cols=82  Identities=12%  Similarity=0.068  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHH---hCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCC
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG  158 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~  158 (359)
                      -+..+++.|.+.|.+|.+||+.-.......   ..++...+++++.++.+|+|+++++.+ +.+.+-  -+++...|+++
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~--~~~~~~~~~~~   94 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELD--WEEIAKLMRKP   94 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCG--HHHHHHHSCSS
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccC--HHHHHHhcCCC
Confidence            367889999999999999999765543333   146777889999999999999999644 444321  14455667788


Q ss_pred             CEEEeccC
Q 018213          159 KGYVDVST  166 (359)
Q Consensus       159 ~~vi~~s~  166 (359)
                      .+|+|+-+
T Consensus        95 ~~iiD~~~  102 (106)
T PF03720_consen   95 PVIIDGRN  102 (106)
T ss_dssp             EEEEESSS
T ss_pred             CEEEECcc
Confidence            89998743

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.25  E-value=0.00072  Score=62.45  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--------CCcEE-EEcCCccch-------hHH---HhCC-C--ccCC--CHHHHh-h
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT-VWNRTKSKC-------DPL---ISLG-A--KYQP--SPDEVA-A  126 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--------g~~V~-~~d~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~  126 (359)
                      |+|+|+|+|++|+.+++.|.+.        +.+|. ++|++....       +.+   .+.| +  ....  +.++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            4799999999999999999773        34543 456543211       111   1111 1  1112  455554 3


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH-HHHHHHHHHHhcCCeee
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL  187 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~~~~~~  187 (359)
                      ++|+|+-|+|....-....   .-+.+.++.|..+|..+-+... ...++.+..++++..+.
T Consensus        81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~  139 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR  139 (326)
T ss_pred             CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence            6899999997432111111   2224567788888866544332 34566666666666554

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.25  E-value=0.0021  Score=64.88  Aligned_cols=74  Identities=22%  Similarity=0.411  Sum_probs=57.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHHh-----hcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEVA-----ASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDivi~~~p~~~~~~~  143 (359)
                      .+|-|+|+|++|+.+++.|.+.|+++++.|.++++++.+++.|....   .+-.+++     +++|.+++++++++....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~  480 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ  480 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence            67999999999999999999999999999999999888887765431   1222333     479999999976655555


Q ss_pred             Hh
Q 018213          144 VA  145 (359)
Q Consensus       144 ~~  145 (359)
                      +.
T Consensus       481 i~  482 (621)
T PRK03562        481 LV  482 (621)
T ss_pred             HH
Confidence            54

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.25  E-value=0.0019  Score=61.86  Aligned_cols=126  Identities=22%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch----hHHHhCCCccCC--CHHHHhhcCCEEEEee--C-ChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAML--A-DPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivi~~~--p-~~~~  140 (359)
                      .+|+|.|+|+|.-|.++++.|.+.|++|+++|.++...    ......++....  ...+...++|+|+..-  | ..+.
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~   85 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL   85 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence            37999999999999999999999999999999766541    112223443321  1224567899999864  2 2222


Q ss_pred             HHHHhc------ccccccccC--CCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC
Q 018213          141 AMDVAC------GKHGAASGM--GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  195 (359)
Q Consensus       141 ~~~~~~------~~~~~~~~l--~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  195 (359)
                      +.....      ++-+++...  ...-+-|.-++|+..++.-+...++..|....-+..+|.+
T Consensus        86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p  148 (448)
T COG0771          86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP  148 (448)
T ss_pred             HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence            222210      111223232  1223344446677777777778888877655555444444

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.24  E-value=0.0046  Score=60.11  Aligned_cols=115  Identities=21%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc----hhHHHhCCCccC--CCHHHHhhc-CCEEEEee--CC-h
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK----CDPLISLGAKYQ--PSPDEVAAS-CDVTFAML--AD-P  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~----~~~~~~~g~~~~--~~~~~~~~~-aDivi~~~--p~-~  138 (359)
                      +++++|.|+|.|.+|.++|+.|++.|++|.++|++...    .+.+.+.|+...  ....+++.. .|+||...  |. .
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            55688999999999999999999999999999976532    133444565543  233444444 89888755  22 2


Q ss_pred             hHHHHHhc------ccccccccCCCCC-EEEeccCCChHHHHHHHHHHHhcC
Q 018213          139 ESAMDVAC------GKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATG  183 (359)
Q Consensus       139 ~~~~~~~~------~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~  183 (359)
                      +.......      +..++...+.+.. +-|.-|.|+..+..-+...|+..+
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            22222210      1112222222323 344445666666666667776654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.22  E-value=0.0012  Score=61.04  Aligned_cols=67  Identities=13%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHhC------CCccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDi  130 (359)
                      ++||+|||+ |.+|..+|..|...|.       ++.++|.+...  ++.    +.+.      .+....+..+.+++||+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi   81 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW   81 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence            468999999 9999999999987775       79999985432  211    1110      12233455577899999


Q ss_pred             EEEeeCC
Q 018213          131 TFAMLAD  137 (359)
Q Consensus       131 vi~~~p~  137 (359)
                      ||++.-.
T Consensus        82 vvitaG~   88 (322)
T cd01338          82 ALLVGAK   88 (322)
T ss_pred             EEEeCCC
Confidence            9998743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=97.21  E-value=0.0034  Score=57.83  Aligned_cols=66  Identities=20%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHH---CCCcEEEEcCCccch---hHHHhCC--Ccc----CCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+ |.+|++++..+..   .++++.++|+++...   -.+.+.+  ...    .+++.+.++++|+||+|.-.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            68999999 9999999988844   346899999875431   1222211  111    24556778899999998843

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.21  E-value=0.0021  Score=59.43  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=46.7

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCcc--chhHHH----hC------CCccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKS--KCDPLI----SL------GAKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~~~----~~------g~~~~~~~~~~~~~aDi  130 (359)
                      +.||+|||+ |.+|..+|..|...|.       ++.++|.++.  +.+...    +.      +.....+..+.+++||+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv   82 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA   82 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence            468999998 9999999999988774       7999998642  222111    11      12223455577899999


Q ss_pred             EEEeeC
Q 018213          131 TFAMLA  136 (359)
Q Consensus       131 vi~~~p  136 (359)
                      ||++.-
T Consensus        83 VVitAG   88 (323)
T TIGR01759        83 ALLVGA   88 (323)
T ss_pred             EEEeCC
Confidence            999874

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.21  E-value=0.0014  Score=61.07  Aligned_cols=117  Identities=16%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHH--------CCC--cEE-EEcCCccc-----h--hHHH---hC-C-Cc-c-------CCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK--------AGC--DVT-VWNRTKSK-----C--DPLI---SL-G-AK-Y-------QPS  120 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~--------~g~--~V~-~~d~~~~~-----~--~~~~---~~-g-~~-~-------~~~  120 (359)
                      .+|+|+|+|++|+.+++.|.+        .|.  +|. +.|++...     .  ..+.   +. + .. .       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            679999999999999999876        563  433 34543211     1  1111   11 1 00 0       116


Q ss_pred             HHHHh--hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeeec-CCCCCCC
Q 018213          121 PDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE-APVSGSK  195 (359)
Q Consensus       121 ~~~~~--~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~-~~~~~~~  195 (359)
                      .++++  .++|+||-+++ +......+      ...+..|..+|..+.+.. ...+++.+..++++..+.. +.+.++.
T Consensus        83 ~~ell~~~~~DVvVd~t~-~~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~Gi  154 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTN-DKNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGT  154 (336)
T ss_pred             HHHHHhcCCCCEEEECCC-cHHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccC
Confidence            67777  47899999885 44555554      245677888885554321 3445676766667776654 3344333

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.21  E-value=0.00097  Score=59.04  Aligned_cols=112  Identities=18%  Similarity=0.251  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE--------cCCccchhHHHh----CCC--ccCC----------CHH-H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD-E  123 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~--------d~~~~~~~~~~~----~g~--~~~~----------~~~-~  123 (359)
                      ++++++.|-|+|++|..+|+.|.+.|..|+..        |++.-..+.+.+    .+.  ....          +.+ +
T Consensus        30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  109 (244)
T PF00208_consen   30 LEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE  109 (244)
T ss_dssp             STTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence            78899999999999999999999999887654        544333333332    122  1111          121 4


Q ss_pred             Hh-hcCCEEEEeeCChhHHHHHhcccccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          124 VA-ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       124 ~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++ .+|||++-|.- .    +.+  +++-.+ .+++++-+|-.+...|.+.++.. .|.++|+.+++
T Consensus       110 il~~~~DiliP~A~-~----~~I--~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~viP  168 (244)
T PF00208_consen  110 ILSVDCDILIPCAL-G----NVI--NEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGILVIP  168 (244)
T ss_dssp             GGTSSSSEEEEESS-S----TSB--SCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-EEE-
T ss_pred             cccccccEEEEcCC-C----Cee--CHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCEEEc
Confidence            55 48999998863 2    223  233334 45555544444444444554444 88888877764

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.20  E-value=0.00077  Score=56.83  Aligned_cols=62  Identities=27%  Similarity=0.404  Sum_probs=48.5

Q ss_pred             EEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018213           74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        74 igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p~  137 (359)
                      |.|+|. |.+|+.+++.|.+.|++|++..|++++.+.  ..+++.       .+++.++++++|+|+.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            678995 999999999999999999999999887665  223221       12345677899999999964

...

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.19  E-value=0.0013  Score=61.14  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++.++|.|||+|.+|+.+|+.|+..|+ +++++|++.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            677899999999999999999999997 789999875

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.19  E-value=0.0018  Score=58.37  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCccCCCHHHH-hhcCCEEEEeeCChhHH--H--H
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPESA--M--D  143 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivi~~~p~~~~~--~--~  143 (359)
                      ++++.|+|+|..+++++..|...|. +|++++|++++.+.+.+. +....   +++ ...+|+||.|+|....-  .  .
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~  198 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK  198 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence            3589999999999999999999997 599999999887776543 22111   111 24589999999854221  0  0


Q ss_pred             -HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          144 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       -+  +   ...++++.+++|+.-.+..  ..+.+..++.|...++
T Consensus       199 ~pi--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~i~  237 (272)
T PRK12550        199 LAF--P---EAEIDAASVVFDVVALPAE--TPLIRYARARGKTVIT  237 (272)
T ss_pred             CCC--C---HHHcCCCCEEEEeecCCcc--CHHHHHHHHCcCeEeC
Confidence             11  1   1346778889988665433  2466666777766554

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.17  E-value=0.0019  Score=58.40  Aligned_cols=78  Identities=24%  Similarity=0.337  Sum_probs=60.9

Q ss_pred             cCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           68 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        68 ~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ++.++++.|||-+ .+|+.++..|...    +..|+++....              .++.+..++|||||.++..+.   
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~---  216 (297)
T PRK14167        154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE---  216 (297)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence            4889999999974 5899999999876    78899886432              256788899999999997654   


Q ss_pred             HHhcccccccccCCCCCEEEeccCCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                       ++  .   .+++++|+++||++...
T Consensus       217 -~i--~---~~~ik~gaiVIDvGin~  236 (297)
T PRK14167        217 -LI--D---GSMLSEGATVIDVGINR  236 (297)
T ss_pred             -cc--C---HHHcCCCCEEEEccccc
Confidence             33  1   24578999999997443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.14  E-value=0.002  Score=63.74  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=72.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc--CCCHHHHh-hcCCEEEEeeCChhHH--H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVA-ASCDVTFAMLADPESA--M  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~-~~aDivi~~~p~~~~~--~  142 (359)
                      ++++++.|+|.|.+|++++..|...|++|++++|+.++.+.+.+. +...  ..+..+.. ..+|+|+.++|....-  .
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~  456 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD  456 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence            667899999999999999999999999999999998777666542 2111  12222222 3568888787644221  0


Q ss_pred             H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          143 D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       143 ~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      . -+  +   ...++++.+++|+.-.+.. + .+.+..++.|...++
T Consensus       457 ~~pl--~---~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~  496 (529)
T PLN02520        457 ETPI--S---KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIVS  496 (529)
T ss_pred             CCcc--c---HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEeC
Confidence            0 11  0   1346677888888665443 2 455666666655443

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.14  E-value=0.002  Score=58.37  Aligned_cols=78  Identities=21%  Similarity=0.341  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHH----CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .+++++++.|||-+ .+|+.++..|.+    .|..|+.+..+.              .++++.+++||+||.+++.+   
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---  217 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---  217 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc---
Confidence            34889999999975 589999999987    578898887543              24678889999999999765   


Q ss_pred             HHHhcccccccccCCCCCEEEeccCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                       +++  ..   +.+++|+++||++-.
T Consensus       218 -~li--~~---~~vk~GavVIDVgi~  237 (295)
T PRK14174        218 -RFI--TA---DMVKPGAVVIDVGIN  237 (295)
T ss_pred             -Ccc--CH---HHcCCCCEEEEeecc
Confidence             234  22   245899999999743

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.14  E-value=0.023  Score=49.04  Aligned_cols=68  Identities=19%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLG-AKY---QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~~p~  137 (359)
                      +++++|.|||.|.+|..-++.|...|.+|+++++... ....+.+.| +..   ... .+.+.++|+|+.++..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            7789999999999999999999999999999988654 223333332 221   112 2345677777777643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.11  E-value=0.002  Score=57.95  Aligned_cols=77  Identities=26%  Similarity=0.336  Sum_probs=60.4

Q ss_pred             ccCCCCeEEEEcCC-hhhHHHHHHHHH----CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           67 ADELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~G-~iG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .+++++++.|||-+ .+|+.++..|..    .+..|+.+..+.              .++.+.+++||+||.+++.+.- 
T Consensus       153 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~l-  217 (286)
T PRK14184        153 LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRF-  217 (286)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCc-
Confidence            34889999999975 589999999998    678898887532              2577889999999999975532 


Q ss_pred             HHHhcccccccccCCCCCEEEeccC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +  ..   +.+++|+++||++-
T Consensus       218 ---i--~~---~~vk~GavVIDVGi  234 (286)
T PRK14184        218 ---V--TA---DMVKPGAVVVDVGI  234 (286)
T ss_pred             ---C--CH---HHcCCCCEEEEeee
Confidence               3  12   34689999999964

>PRK05442 malate dehydrogenase; Provisional

Probab=97.10  E-value=0.003  Score=58.48  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHhC------CCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aD  129 (359)
                      +++||+|||+ |.+|..+|..|...|.       ++.++|.++..  .+.    +.+.      ......+..+.+++||
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD   82 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD   82 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence            3478999998 9999999999887553       79999985431  211    1111      1233345557789999


Q ss_pred             EEEEeeC
Q 018213          130 VTFAMLA  136 (359)
Q Consensus       130 ivi~~~p  136 (359)
                      +|+++.-
T Consensus        83 iVVitaG   89 (326)
T PRK05442         83 VALLVGA   89 (326)
T ss_pred             EEEEeCC
Confidence            9999774

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.04  E-value=0.0027  Score=58.06  Aligned_cols=110  Identities=14%  Similarity=0.067  Sum_probs=76.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH---HHHhc-
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC-  146 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~---~~~~~-  146 (359)
                      +++++|||.-.=-..+++.|.+.|++|.++.-..+   .....|+....+.++++.++|+|+.-+|.+..-   +..+. 
T Consensus         2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~   78 (296)
T PRK08306          2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN   78 (296)
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence            46799999999999999999999999998764321   122347778878889999999999988743211   11100 


Q ss_pred             ----ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ----~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                          -+++.++.|+++.+++ .+...+.    +.+.+.++++.+++
T Consensus        79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~  119 (296)
T PRK08306         79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE  119 (296)
T ss_pred             cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence                0245577899998555 3555554    23456678887775

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.04  E-value=0.0025  Score=53.53  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=29.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      +|+|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999998 599999865

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.03  E-value=0.0049  Score=60.33  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-HhCCCccCC--CHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivi~~  134 (359)
                      ..+++|.|+|+|..|.++|+.|...|++|+++|++......+ .+.|+....  ...+.+.++|+||..
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S   81 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS   81 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence            566889999999999999999999999999999876543332 334665532  223445688988876

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.03  E-value=0.0018  Score=60.32  Aligned_cols=92  Identities=14%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCc---EEEE--cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~--d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ...++|+|+|. |.+|..+.+.|...+|.   +...  .|+..+.-..............+.+.++|+||+|+|.. ...
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~   83 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK   83 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH
Confidence            34578999996 99999999999987763   3322  23322211111111111111124457899999999844 555


Q ss_pred             HHhcccccccccCCCCCEEEeccCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .+.   +++   .+.|..|||.|..
T Consensus        84 ~~~---~~~---~~~g~~VIDlS~~  102 (344)
T PLN02383         84 KFG---PIA---VDKGAVVVDNSSA  102 (344)
T ss_pred             HHH---HHH---HhCCCEEEECCch
Confidence            554   322   3468899999743

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.00  E-value=0.0015  Score=60.48  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|.|+| +|.+|+.+++.|.+.|++|++.+|++++...+...++..       ..++.++++++|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            5799999 599999999999999999999999875544333334332       1245567888999987653

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.98  E-value=0.0038  Score=60.98  Aligned_cols=116  Identities=21%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccC-CCHHHHhhcCCEEEEee--CC-hhHHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQ-PSPDEVAASCDVTFAML--AD-PESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~-~~~~~~~~~aDivi~~~--p~-~~~~~  142 (359)
                      .++++|.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+... ....+.+.++|+||+.-  |. .+...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            45578999999999999 89999999999999997643 2234555566553 12234556899988754  22 22333


Q ss_pred             HHh------cccccccccC-CCCC-EEEeccCCChHHHHHHHHHHHhcCC
Q 018213          143 DVA------CGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       143 ~~~------~~~~~~~~~l-~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ...      .+..+++..+ ++.. +-|.-|.|+..+..-+...|+..|.
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            221      1122333222 2223 3444456677777777777876663

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.97  E-value=0.0021  Score=59.85  Aligned_cols=89  Identities=17%  Similarity=0.155  Sum_probs=56.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCc---EEEEcCCccchhHHHhCC--CccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++|+|+|. |.+|+.+.+.|...||.   +....+..+.-+.+.-.+  +...+...+.+.++|+||+|+| ....+.+.
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g-~g~s~~~~   80 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAG-GSVSKKYA   80 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCC-hHHHHHHH
Confidence            68999996 99999999999998775   355544333222221111  2222111233478999999997 44555555


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         +.+   ++.|..|||.|..
T Consensus        81 ---~~~---~~~G~~VIDlS~~   96 (334)
T PRK14874         81 ---PKA---AAAGAVVIDNSSA   96 (334)
T ss_pred             ---HHH---HhCCCEEEECCch
Confidence               332   3568899998754

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.95  E-value=0.003  Score=58.00  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccch--hHHHhC----CCccC---CCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKC--DPLISL----GAKYQ---PSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~--~~~~~~----g~~~~---~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+ |++|..+|..|...|.  ++.++|++..+.  -.+.+.    .+...   +++.+.+++||+|+++.-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence            58999999 9999999999988874  789999871111  112221    12211   2335678999999998743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.006  Score=59.36  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc-cch----hHHHhCCCcc--CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKC----DPLISLGAKY--QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~-~~~----~~~~~~g~~~--~~~~~~~~~~aDivi~~~p  136 (359)
                      +++++|.|+|.|.+|.++|+.|++.|++|+++|++. +..    +.+.+.|+..  .+..++....+|+||.+.-
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            567899999999999999999999999999999975 222    2233335432  2233455678999998763

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.94  E-value=0.0018  Score=59.74  Aligned_cols=69  Identities=12%  Similarity=0.127  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCC--CcEEEEcCCccchh--HHHhC----CCccC---CCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQ---PSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~--~~~~~----g~~~~---~~~~~~~~~aDivi~~~p  136 (359)
                      .+++||+|||+ |++|..+|..|...+  .++.++|+.....+  .+.+.    .+...   .+..+.++++|+|+++.-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56789999999 999999999998655  58999998322211  11111    11112   122577899999998874


Q ss_pred             C
Q 018213          137 D  137 (359)
Q Consensus       137 ~  137 (359)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            3

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.94  E-value=0.0058  Score=58.58  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHC-------CC--cEEEEcCCccchhHHH----h------CCCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~-------g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aD  129 (359)
                      +.-||+|||+ |++|..+|..|...       |.  ++..+|++.++.+...    +      ..+....+..+.+++||
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD  178 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE  178 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence            4468999999 99999999999876       54  7888999887654322    1      12332334557789999


Q ss_pred             EEEEeeCC
Q 018213          130 VTFAMLAD  137 (359)
Q Consensus       130 ivi~~~p~  137 (359)
                      |||++.-.
T Consensus       179 iVVitAG~  186 (444)
T PLN00112        179 WALLIGAK  186 (444)
T ss_pred             EEEECCCC
Confidence            99998744

>PLN00106 malate dehydrogenase

Probab=96.93  E-value=0.0075  Score=55.68  Aligned_cols=68  Identities=9%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchh--HHHhC----CCc---cCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivi~~~p  136 (359)
                      ....||+|||+ |++|..+|..|...+.  ++.++|+++...+  .+.+.    .+.   ..++..+.++++|+||++.-
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            34478999999 9999999999987664  7999998762211  11111    111   12345678899999999874

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.92  E-value=0.0019  Score=59.35  Aligned_cols=64  Identities=13%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      ||+|||+|.+|..+|..|...|.  ++.++|.++++.+...    +.       .+....+..+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            59999999999999999988775  7999999876543211    10       11222233466789999999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.91  E-value=0.019  Score=49.52  Aligned_cols=70  Identities=26%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc-cchhHHHhC-CCcc---CCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISL-GAKY---QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~-g~~~---~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      +++++|.|||.|.+|..=++.|.+.|.+|+++.+.. +....+.+. ++..   .-+.+++ ..+++|+.+++++.
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~   84 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEE   84 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHH
Confidence            788999999999999999999999999999998765 333333333 2211   1233343 45999999997544

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.86  E-value=0.0097  Score=55.15  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=46.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-------CcEEEEcCCccc--hhH----HHh------CCCccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-------~~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi  130 (359)
                      +.||+|+|+ |.+|..++..|...+       .+|.++|+++..  .+.    +.+      ..+....++.+.+++||+
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi   81 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV   81 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence            367999999 999999999998754       489999986532  111    110      012223566677899999


Q ss_pred             EEEeeC
Q 018213          131 TFAMLA  136 (359)
Q Consensus       131 vi~~~p  136 (359)
                      ||++.-
T Consensus        82 VI~tAG   87 (325)
T cd01336          82 AILVGA   87 (325)
T ss_pred             EEEeCC
Confidence            998763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.86  E-value=0.0075  Score=57.73  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcC----------Cccchh---HHHhC------------CCccCCC
Q 018213           67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNR----------TKSKCD---PLISL------------GAKYQPS  120 (359)
Q Consensus        67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~----------~~~~~~---~~~~~------------g~~~~~~  120 (359)
                      .+++++||.|.|+|++|...|+.|.+.|.+|++ .|.          +.+++.   .+++.            ++... +
T Consensus       224 ~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~  302 (444)
T PRK14031        224 TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-E  302 (444)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-C
Confidence            358899999999999999999999999999987 441          111111   01100            22222 2


Q ss_pred             HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCC-CCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~-~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .++++ .+|||++=|.-     .+.|  +.+-.+.++ ++..+|..+...|.+.+ ..+.+.++++.+++
T Consensus       303 ~d~~~~~~cDIliPaAl-----~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P  364 (444)
T PRK14031        303 GARPWGEKGDIALPSAT-----QNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP  364 (444)
T ss_pred             CcccccCCCcEEeeccc-----cccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence            33332 46899887662     2333  233333443 34445555544566665 44667788887765

>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1

Probab=96.86  E-value=0.0062  Score=48.02  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCch
Q 018213          251 MMATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTP  326 (359)
Q Consensus       251 ~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p  326 (359)
                      +..++.|+..++++.|++  .+.+.+.+.......+   ...++|.++ ...+  ..++..   .+.+++.++++|+++|
T Consensus        40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~~~~SM~~D-~~~gr~tEid~i---~G~vv~~a~~~gv~~P  112 (125)
T PF08546_consen   40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP---DNRSSMLQD-IEAGRPTEIDYI---NGYVVRLAKKHGVPTP  112 (125)
T ss_dssp             HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT---TT--HHHHH-HHTTB--SHHHT---HHHHHHHHHHTT---H
T ss_pred             HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC---CccccHHHH-HHHcccccHHHH---HHHHHHHHHHHCCCCc
Confidence            455778999999999974  3334444432211100   012233322 1111  224444   7889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018213          327 IAAAANELYKVA  338 (359)
Q Consensus       327 ~~~~~~~~~~~a  338 (359)
                      .++.++++++..
T Consensus       113 ~~~~i~~lvk~~  124 (125)
T PF08546_consen  113 VNETIYALVKAI  124 (125)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.85  E-value=0.0042  Score=56.92  Aligned_cols=122  Identities=24%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC--------CCcEE---EEcCCccchhHHHhCC-CccCCCH-----HHHhh--cCCEE
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVT  131 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~--------g~~V~---~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDiv  131 (359)
                      ..+|+|+|+|.+|+.+++.|.++        |.++.   +.+|+......+.-.+ .....+.     .+++.  +.|+|
T Consensus         3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv   82 (333)
T COG0460           3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV   82 (333)
T ss_pred             eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence            47899999999999999999875        33433   3455443322111011 1122223     34443  46789


Q ss_pred             EEeeCC-hhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee-cCCCCCCCc
Q 018213          132 FAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL-EAPVSGSKK  196 (359)
Q Consensus       132 i~~~p~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~-~~~~~~~~~  196 (359)
                      +.+++. ....+. .   ..+...++.|..||...-... ..-.+|.+..++.|..+. .+.+.++.|
T Consensus        83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP  146 (333)
T COG0460          83 VELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP  146 (333)
T ss_pred             EecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence            988875 233332 3   334567889999984422211 223457777777665543 455555443

>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1

Probab=96.84  E-value=0.0044  Score=55.69  Aligned_cols=96  Identities=19%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhcccccccCCCCCCcchhHH-----
Q 018213          237 GAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPTAFPLKHQ-----  307 (359)
Q Consensus       237 ~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----  307 (359)
                      ++..||+.|.+.++++++++|++.+++. .|++.+++.+++.   .+...|++.+.....+...+.....-++..     
T Consensus         1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~   80 (291)
T PF00393_consen    1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG   80 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred             CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence            4789999999999999999999999995 6888888877766   466778887766554444442211112211     


Q ss_pred             -HHHHHHHHHHHHhcCCCchHHHHHH
Q 018213          308 -QKDLRLALGLAESVSQSTPIAAAAN  332 (359)
Q Consensus       308 -~kd~~~~~~~a~~~g~~~p~~~~~~  332 (359)
                       -..-.+....+-+.|+|+|++..+.
T Consensus        81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~  106 (291)
T PF00393_consen   81 QKGTGKWTVQEALELGVPAPTIAAAV  106 (291)
T ss_dssp             -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred             CCCccchHHHHHHHhCCCccHHHHHH
Confidence             1123667888999999999988764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.84  E-value=0.0051  Score=56.54  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchh--HHHhC----CCcc-C-C-CHHHHhhcCCEEEEeeCC
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKY-Q-P-SPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~-~-~-~~~~~~~~aDivi~~~p~  137 (359)
                      ||+|||+ |++|..+|..|...+.  ++.++|+++...+  .+.+.    .+.. . + ++.+.+++||+|+++...
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~   77 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV   77 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence            5999999 9999999999988775  7999998762211  11111    1111 1 1 235778999999998743

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.0032  Score=57.92  Aligned_cols=65  Identities=25%  Similarity=0.284  Sum_probs=48.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc-CC---CHHHHhhcCCEEE---EeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY-QP---SPDEVAASCDVTF---AMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~-~~---~~~~~~~~aDivi---~~~p  136 (359)
                      ++|||||-|..|+.++......|++|++.|++++........ -+.. .+   .+.++++.||+|.   .++|
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~   74 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVP   74 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCC
Confidence            689999999999999999999999999999887654322221 1111 22   4667888999995   4665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.82  E-value=0.0047  Score=60.13  Aligned_cols=70  Identities=20%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--CCcc-C---CCHHH----HhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY-Q---PSPDE----VAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-~---~~~~~----~~~~aDivi~~~p~~  138 (359)
                      ..+++|.|+|+|.+|+.+++.|.+.|++|+++|+++++.+.+.+.  +... .   .+.+.    -+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            446889999999999999999999999999999999877776653  3321 1   12222    235789998888643

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.82  E-value=0.0043  Score=53.79  Aligned_cols=35  Identities=20%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~  103 (359)
                      ++..+|.|||+|.+|+.+++.|...|. +++++|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            677899999999999999999999997 58999886

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0091  Score=52.55  Aligned_cols=104  Identities=19%  Similarity=0.245  Sum_probs=64.8

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-CcEE-EEcCCccch-----hHH---HhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVT-VWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~-~~d~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      ++||+|.|+ |+||+.+.+.+.+.. +++. .++|.+...     .++   ...|+...+++.....++|++|=.+ .|.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE   80 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence            478999998 999999999998765 5544 567765422     111   1225566666777778999999777 466


Q ss_pred             HHHHHhcccccccccCCCCC-EEEeccCCChHHHHHHHHHHHh
Q 018213          140 SAMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKA  181 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~  181 (359)
                      .+...+   +-.   ++.+. +||-++.-+....+.+.++.+.
T Consensus        81 ~~~~~l---~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~  117 (266)
T COG0289          81 ATLENL---EFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK  117 (266)
T ss_pred             hhHHHH---HHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence            666665   222   22333 4454433345555555555443

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.81  E-value=0.0017  Score=53.75  Aligned_cols=68  Identities=10%  Similarity=0.196  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCChhhHHHHHH-H-HHCCCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQN-L-LKAGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~-l-~~~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      +.-++.|||+|++|++++.. + ...|+++. ++|.+++.+...... -+.-.+++++.++  +.|+.++|+|.
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            44679999999999999985 3 46788765 789887754322211 1223446666676  57889999984

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0058  Score=55.88  Aligned_cols=100  Identities=16%  Similarity=0.295  Sum_probs=60.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-----CC---cc-CCCHHHH-hhcCCEEEEeeCCh
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP  138 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivi~~~p~~  138 (359)
                      ++||+|||. |.-|..+.+.|.... .++..+..+..+-+.+.+.     |.   .. ..+.+++ .++||+||+|+|..
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg   81 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG   81 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence            478999997 999999999998765 4766665443222222221     11   11 1133333 44699999999965


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHH
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING  177 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~  177 (359)
                      . ..+++   ..+   +.+|..|||+|...-.....+.+
T Consensus        82 ~-s~~~v---~~l---~~~g~~VIDLSadfR~~d~~~ye  113 (349)
T COG0002          82 V-SAELV---PEL---LEAGCKVIDLSADFRLKDPEVYE  113 (349)
T ss_pred             h-HHHHH---HHH---HhCCCeEEECCcccccCCHHHHH
Confidence            3 34444   333   33566799998876554334443

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.80  E-value=0.0049  Score=54.92  Aligned_cols=86  Identities=20%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +.++++.|-|+ +.||..+|+.|++.|++|++..|+.++++.+.++       +++-- -+++++-+=+.++.....+. 
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~-   75 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLE-   75 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHH-
Confidence            56688999997 9999999999999999999999999888776542       22211 13445554455566666665 


Q ss_pred             ccccccccCCCCCEEEec
Q 018213          147 GKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~  164 (359)
                        .++.....+=.++||.
T Consensus        76 --~~l~~~~~~IdvLVNN   91 (265)
T COG0300          76 --DELKERGGPIDVLVNN   91 (265)
T ss_pred             --HHHHhcCCcccEEEEC
Confidence              4444432333566666

>PRK15076 alpha-galactosidase; Provisional

Probab=96.80  E-value=0.0015  Score=62.84  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CeEEEEcCChhhHHHHH--HHH----HCCCcEEEEcCCccchhHHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~  133 (359)
                      +||+|||.|.+|...+.  .+.    -.+.+|.++|+++++.+....        .+    +..+.+..+.+++||+|++
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            68999999999966554  332    235689999999876552111        11    3345677888999999999


Q ss_pred             eeCC
Q 018213          134 MLAD  137 (359)
Q Consensus       134 ~~p~  137 (359)
                      ++-.
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            8843

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.77  E-value=0.005  Score=58.80  Aligned_cols=113  Identities=20%  Similarity=0.207  Sum_probs=68.7

Q ss_pred             ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHH---hC-------------CCccCC
Q 018213           67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLI---SL-------------GAKYQP  119 (359)
Q Consensus        67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~---~~-------------g~~~~~  119 (359)
                      .+++++||.|-|+|++|...|+.|.+.|.+|+ +.|.+          .+++..+.   +.             +.+...
T Consensus       233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~  312 (454)
T PTZ00079        233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP  312 (454)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC
Confidence            44788999999999999999999999999988 66665          22221111   10             222222


Q ss_pred             CHHHHh-hcCCEEEEeeCChhHHHHHhcccccccccC-CCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          120 SPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       120 ~~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       .++++ -+|||.+-|.-     .+.|  +.+-.+.+ +.++-+|-.+...|.+. +..+.|.++|+.+++
T Consensus       313 -~~~~~~~~cDI~iPcA~-----~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P  374 (454)
T PTZ00079        313 -GKKPWEVPCDIAFPCAT-----QNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP  374 (454)
T ss_pred             -CcCcccCCccEEEeccc-----cccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence             22222 36899887762     2233  22222222 34555555555555555 455788888988875

>cd00704 MDH Malate dehydrogenase

Probab=96.76  E-value=0.005  Score=56.97  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCc--cchhHH----HhC------CCccCCCHHHHhhcCCEEE
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivi  132 (359)
                      ||+|||+ |.+|..++..|...|.       ++.++|+++  +..+..    .+.      +.....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            6999999 9999999999987652       499999976  432211    111      1222245668889999999


Q ss_pred             EeeC
Q 018213          133 AMLA  136 (359)
Q Consensus       133 ~~~p  136 (359)
                      ++.-
T Consensus        82 itAG   85 (323)
T cd00704          82 LVGA   85 (323)
T ss_pred             EeCC
Confidence            8763

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.72  E-value=0.021  Score=56.37  Aligned_cols=66  Identities=18%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhC--CCccC--CCHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivi~~  134 (359)
                      +++++|.|+|.|..|.++|+.|...|++|.++|.....  .+.+.+.  |+...  ....+.+.++|+||..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            45678999999999999999999999999999975432  2334343  33322  1234556789999986

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.71  E-value=0.0083  Score=58.92  Aligned_cols=115  Identities=22%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCCccCC-CHHHHhhcCCEEEEee---CChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQP-SPDEVAASCDVTFAML---ADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~~~~~-~~~~~~~~aDivi~~~---p~~~  139 (359)
                      .++++|.|||.|.+|..+|+.|...|++|+++|+++..     .+.+.+.|+.... ...+....+|+||++.   |..+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~   93 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAP   93 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCH
Confidence            56689999999999999999999999999999965421     1234455665431 1111345689999876   3333


Q ss_pred             HHHHHh------ccccccc-ccCCC---C-CEEEeccCCChHHHHHHHHHHHhcC
Q 018213          140 SAMDVA------CGKHGAA-SGMGP---G-KGYVDVSTVDGDTSKLINGHIKATG  183 (359)
Q Consensus       140 ~~~~~~------~~~~~~~-~~l~~---~-~~vi~~s~~~~~~~~~l~~~l~~~~  183 (359)
                      .....-      .++.+++ ..+.+   . .+-|.-|.|+..+..-+...|+..+
T Consensus        94 ~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         94 LLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             HHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            222211      0111222 22222   1 2334445566666666666776543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.71  E-value=0.0049  Score=49.34  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=62.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh--------CCCccCCCHHHHhh--cCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivi~~~p~~~  139 (359)
                      .++|.|+|+|.+|+.+++.|+..|. +++++|.+.=....+..        -|...+....+.+.  ..++=+.+.|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            3689999999999999999999997 68999875432222211        12221212222222  1233333333222


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                       ....+   .+++   ++-.++|++.. .......+.+.+.+.++.++.+.+.+
T Consensus        82 -~~~~~---~~~~---~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~~g  127 (135)
T PF00899_consen   82 -DEENI---EELL---KDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGVNG  127 (135)
T ss_dssp             -SHHHH---HHHH---HTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred             -ccccc---cccc---cCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEeec
Confidence             11112   2222   23346776643 45556677778888888887765443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.68  E-value=0.0041  Score=54.70  Aligned_cols=64  Identities=28%  Similarity=0.345  Sum_probs=49.3

Q ss_pred             EEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018213           74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        74 igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p~  137 (359)
                      |.|+|. |.+|+.+++.|...+++|.+..|++.+  .+.+.+.|+..       .+++.++++.+|.|++++|.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            679985 999999999999999999999998643  34455556543       12455678899999998873

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.67  E-value=0.0076  Score=57.64  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEE--------EcCC---ccchh---HHHhC-------------CCccCCC
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCD---PLISL-------------GAKYQPS  120 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~--------~d~~---~~~~~---~~~~~-------------g~~~~~~  120 (359)
                      +++++||+|-|+|++|...|+.|.+.|.+|++        ||.+   .++++   ..++.             +.+.. +
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~  303 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A  303 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence            48889999999999999999999999999988        6743   22211   11111             22222 2


Q ss_pred             HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccC-CCC-CEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPG-KGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~-~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .++++ .+|||++-|.     +.+.|  +.+-.+.+ +.+ .+|+--+++ |.+. +..+.|.++|+.+++
T Consensus       304 ~~~~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP  365 (445)
T PRK14030        304 GKKPWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP  365 (445)
T ss_pred             CccceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence            23333 3689988766     23333  22222333 122 355555565 6555 455788889988875

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.67  E-value=0.014  Score=56.92  Aligned_cols=112  Identities=10%  Similarity=0.042  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcC----------ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----------------------CCc
Q 018213           69 ELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GAK  116 (359)
Q Consensus        69 ~~~~~igiiG~----------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~  116 (359)
                      +.+++|+|+|+          ..-...+++.|...|.+|.+||+.-...+.-...                      ++.
T Consensus       322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (473)
T PLN02353        322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVS  401 (473)
T ss_pred             cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccccccccccccccccccee
Confidence            67799999997          3467899999999999999999864332110011                      234


Q ss_pred             cCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          117 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       117 ~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .+.+.+++++++|+|+++++. .+.+.+-+  +.+...|++..+|+|.-+...  .    +.+++.|+.|.+.
T Consensus       402 ~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~--~~~~~~m~~~~~viD~rn~l~--~----~~~~~~G~~y~~~  465 (473)
T PLN02353        402 VVWDAYEATKGAHGICILTEW-DEFKTLDY--QKIYDNMQKPAFVFDGRNVLD--H----EKLREIGFIVYSI  465 (473)
T ss_pred             eeCCHHHHhcCCCEEEECCCC-hHhcccCH--HHHHHhccCCCEEEECCCCCC--H----HHHHhCCcEEEEe
Confidence            556777899999999999964 44443310  333445665568999755432  1    2333447777663

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.015  Score=56.49  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHh--CCCccC--CCHHHHhhcCCEEEEeeC---Chh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQ--PSPDEVAASCDVTFAMLA---DPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~--~~~~~~~~~aDivi~~~p---~~~  139 (359)
                      +.+++|.|+|.|.+|.++|+.|.+.|++|.++|.++..  .+.+.+  .|+...  ...++...++|+||...-   ..+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            45688999999999999999999999999999976543  233333  255432  112344568999998652   223


Q ss_pred             HHHHHhc------cccccccc-CC--CCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213          140 SAMDVAC------GKHGAASG-MG--PGKGY-VDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       140 ~~~~~~~------~~~~~~~~-l~--~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      .......      +..+++.. ++  +..+| |.-|.|+..+..-+...|+..|..
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~  138 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD  138 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence            3333220      11122222 22  12333 444556666666666777765543

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.66  E-value=0.012  Score=55.51  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=46.3

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC-c----EE--EE--cCCccchhHHH----h------CCCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-D----VT--VW--NRTKSKCDPLI----S------LGAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-~----V~--~~--d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aD  129 (359)
                      +..||+|||+ |++|..+|..+...|. .    |.  ++  |++.++.+...    +      ..+....+..+.+++||
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD  122 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD  122 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence            3478999999 9999999999987663 2    33  44  77766544221    1      12332344557789999


Q ss_pred             EEEEeeCC
Q 018213          130 VTFAMLAD  137 (359)
Q Consensus       130 ivi~~~p~  137 (359)
                      +||++...
T Consensus       123 IVVitAG~  130 (387)
T TIGR01757       123 WALLIGAK  130 (387)
T ss_pred             EEEECCCC
Confidence            99997743

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.64  E-value=0.01  Score=55.63  Aligned_cols=109  Identities=18%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc------------------chhHHHhC-CCccCCCHHHHh-hcC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLISL-GAKYQPSPDEVA-ASC  128 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~------------------~~~~~~~~-g~~~~~~~~~~~-~~a  128 (359)
                      ++++||+|=|+|++|+..|+.|...|.+|++++-+..                  +...+.+. +.+.... ++++ .+|
T Consensus       205 l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~c  283 (411)
T COG0334         205 LEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVDC  283 (411)
T ss_pred             cCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccccC
Confidence            7899999999999999999999999999988876554                  11222222 3444433 4443 479


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ||++=|.     +.+.|  +.+-.+.++.. +|+--++++ .+. +..+.+.++|+-|++
T Consensus       284 DIl~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P-~t~-eA~~i~~erGIl~~P  333 (411)
T COG0334         284 DILIPCA-----LENVI--TEDNADQLKAK-IVVEGANGP-TTP-EADEILLERGILVVP  333 (411)
T ss_pred             cEEcccc-----ccccc--chhhHHHhhhc-EEEeccCCC-CCH-HHHHHHHHCCCEEcC
Confidence            9987555     33444  33334455544 555555544 333 334555578877664

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.64  E-value=0.012  Score=48.60  Aligned_cols=95  Identities=13%  Similarity=0.117  Sum_probs=61.1

Q ss_pred             CCeEEEEcC--ChhhHHHHHHHHHCCCcEEEEcCCccc--h--hHH-------HhCC--CccCCCHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~--G~iG~~ia~~l~~~g~~V~~~d~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++|++||=  +++..+++..+..+|+++.++.+..-.  .  +.+       .+.|  +..++++++.++++|+|+.-.
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~   81 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR   81 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence            578999993  899999999999999999998875421  1  111       1123  466789999999999998876


Q ss_pred             CCh---hHHHHHh------cccccccccCCCCCEEEecc
Q 018213          136 ADP---ESAMDVA------CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       136 p~~---~~~~~~~------~~~~~~~~~l~~~~~vi~~s  165 (359)
                      --+   .+-..-+      .-++++++..+++.+|+++.
T Consensus        82 ~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   82 WQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             cccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            330   1111111      01344555566677777663

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.64  E-value=0.013  Score=54.55  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      +...+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            677899999999999999999999998 899999864

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.63  E-value=0.006  Score=53.61  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      +...+|.|+|+|.+|+.+|+.|+..|. +++++|.+.
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            667899999999999999999999996 788888754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.62  E-value=0.0089  Score=54.77  Aligned_cols=80  Identities=21%  Similarity=0.242  Sum_probs=53.4

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+|+|||. |..|..+.+.|..... ++.....+..+  .     .   .+.++.+.++|++|+|+|.. ....+.   
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~~-~s~~~~---   67 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPDD-AAREAV---   67 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCHH-HHHHHH---
Confidence            368999995 9999999999998763 44433332211  1     1   23345667899999999844 444444   


Q ss_pred             ccccccCCCCCEEEeccCC
Q 018213          149 HGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~  167 (359)
                      +++   .+.|..|||.|..
T Consensus        68 ~~~---~~~g~~VIDlSad   83 (313)
T PRK11863         68 ALI---DNPATRVIDASTA   83 (313)
T ss_pred             HHH---HhCCCEEEECChh
Confidence            333   2468899999743

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.61  E-value=0.0068  Score=55.51  Aligned_cols=62  Identities=18%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             EEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----h------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018213           76 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        76 iiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|++|..+|..|...+.  ++.++|++.+..+...    +      .......+..+.+++||+|+++.-.
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~   74 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA   74 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence            68999999999999988775  6999999876543322    1      1123333445678999999997743

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.59  E-value=0.0063  Score=56.56  Aligned_cols=89  Identities=17%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcE---EEEcCCccchh-HHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDV---TVWNRTKSKCD-PLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V---~~~d~~~~~~~-~~~~~g--~~~~-~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ++++|+|+|+ |.+|..+.+.|.+.+|.+   ..... .+... .+...+  .... .+..+ ++++|++++++| +...
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s-~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s   79 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS-SESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVS   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC-cccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHH
Confidence            3478999996 999999999999776642   23322 22111 111111  1111 12233 478999999998 4444


Q ss_pred             HHHhcccccccccCCCCCEEEeccCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ..++   +.+   .+.|..+||.|..
T Consensus        80 ~~~v---~~~---~~~G~~VIDlS~~   99 (336)
T PRK05671         80 RSFA---EKA---RAAGCSVIDLSGA   99 (336)
T ss_pred             HHHH---HHH---HHCCCeEEECchh
Confidence            5554   333   3468899999754

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.57  E-value=0.0077  Score=55.77  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHh------CCCccCCCHHHHhhcCCEEE
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDivi  132 (359)
                      +|+|||+ |.+|..++..|...|.       ++.++|+++..  .+.    +.+      .++....+..+.+++||+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            4899999 9999999999987553       59999986542  211    111      01212224457788999999


Q ss_pred             EeeCC
Q 018213          133 AMLAD  137 (359)
Q Consensus       133 ~~~p~  137 (359)
                      ++.-.
T Consensus        81 itAG~   85 (324)
T TIGR01758        81 LVGAF   85 (324)
T ss_pred             EcCCC
Confidence            97743

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.56  E-value=0.015  Score=52.67  Aligned_cols=46  Identities=24%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+...+.|+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga  166 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA  166 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence            567899999999999999999999987 8888888777666665555

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.53  E-value=0.013  Score=54.99  Aligned_cols=89  Identities=28%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcC---CccchhHHHhCCCccCCCHH----H--HhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPSPD----E--VAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~~~----~--~~~~aDivi~~~p~~~~  140 (359)
                      .+.+|.|+|.|.+|...++.++..|.+|++.++   ++++.+.+.+.|+......+    +  .....|+|+-++..+..
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  251 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL  251 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence            567899999999999999999999999999988   45555555555654321111    0  11235677766643222


Q ss_pred             HHHHhcccccccccCCCCCEEEecc
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +...       +..++++..++.++
T Consensus       252 ~~~~-------~~~l~~~G~~v~~G  269 (355)
T cd08230         252 AFEA-------LPALAPNGVVILFG  269 (355)
T ss_pred             HHHH-------HHHccCCcEEEEEe
Confidence            2222       24455555555443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.53  E-value=0.0074  Score=54.56  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=26.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  103 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~  103 (359)
                      ||.|||+|.+|..+|+.|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999996 57777653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.014  Score=56.81  Aligned_cols=116  Identities=16%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHh--CCCccCC--CHHHHhhcCCEEEEee--CC-hhHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA  141 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivi~~~--p~-~~~~  141 (359)
                      +-+|.|||.|..|.++|+.|.+.|++|+++|.....  .+.+.+  .|+....  ...+.+.++|+||..-  |. .+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            356999999999999999999999999999975432  223443  2555421  1234567899887754  22 2223


Q ss_pred             HHHhc------ccccccccCCCCCE-EEeccCCChHHHHHHHHHHHhcCCee
Q 018213          142 MDVAC------GKHGAASGMGPGKG-YVDVSTVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       142 ~~~~~------~~~~~~~~l~~~~~-vi~~s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ...-.      +..+++..+.+..+ -|.-|.|+..+..-+...|+..|..+
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~  137 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV  137 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence            22210      11123222223333 34445566666766777777665443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.016  Score=54.11  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa  215 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA  215 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC
Confidence            356899999999999999999999998 58889998887776666664

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.48  E-value=0.011  Score=52.44  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ++..+|.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+        |-..+....+-++  +.++-+.+.+.
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            677899999999999999999999996 788888764333322211        2111211112121  23444444322


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                      .-. ..-+   .+   .++.-.+||+++- .+.....+.+.....++.++.+.+.
T Consensus       110 ~i~-~~~~---~~---~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~~  156 (245)
T PRK05690        110 RLD-DDEL---AA---LIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAAI  156 (245)
T ss_pred             cCC-HHHH---HH---HHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeeec
Confidence            111 1111   11   1233457777753 4444555667777777777775443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.48  E-value=0.0041  Score=58.67  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~  103 (359)
                      ++..+|.|||+|.+|..++..|+..|. +++++|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            667899999999999999999999996 78898876

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.47  E-value=0.0063  Score=55.44  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHH----h------CCCccCC-CHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S------LGAKYQP-SPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~------~g~~~~~-~~~~~~~~aDivi~~~  135 (359)
                      +||+|||.|++|+++|..|...+  .++.++|+..+..+...    +      ....... ...+.++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            57999999999999999996655  48999999855433211    1      0122222 1245678999999988

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.45  E-value=0.013  Score=53.36  Aligned_cols=78  Identities=17%  Similarity=0.214  Sum_probs=52.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      .||+|+|. |..|..+.+.|.... +++.....+..         .. ..+.+++++++|++++|+|.. ....+.   +
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~---~   67 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV---S   67 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH---H
Confidence            36999996 999999999999865 34443322211         11 124556778899999999844 555554   3


Q ss_pred             cccccCCCCCEEEeccC
Q 018213          150 GAASGMGPGKGYVDVST  166 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~  166 (359)
                      .+   ...|..|||.|.
T Consensus        68 ~~---~~~g~~VIDlSa   81 (310)
T TIGR01851        68 LV---DNPNTCIIDAST   81 (310)
T ss_pred             HH---HhCCCEEEECCh
Confidence            32   346889999974

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK08328 hypothetical protein; Provisional

Probab=96.45  E-value=0.024  Score=49.85  Aligned_cols=117  Identities=16%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCc-cCCCHHHHhh--cCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAK-YQPSPDEVAA--SCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~aDivi~~~p  136 (359)
                      ++..+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+        |.. ......+-++  +.|+.+.+.+
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            667899999999999999999999996 688898765443333221        110 0000011111  4677766654


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      ..- ..+-+   .+   .+++-.+||++.-. +.....+.+.+...++.++.+.+.+
T Consensus       105 ~~~-~~~~~---~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g  153 (231)
T PRK08328        105 GRL-SEENI---DE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG  153 (231)
T ss_pred             ccC-CHHHH---HH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence            221 11111   11   23445688877544 4444556666777788888766554

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.45  E-value=0.022  Score=50.39  Aligned_cols=117  Identities=14%  Similarity=0.161  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ++..+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+        |-..+....+.++  +.++-+.+.+.
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            677899999999999999999999996 688888765433322211        2111111122222  34554544432


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      .-.... +   .   +.++.-.+||++.- .+.....+.+.+...++.++.+...+
T Consensus       102 ~i~~~~-~---~---~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~~~~g  149 (240)
T TIGR02355       102 KLDDAE-L---A---ALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSGAAIR  149 (240)
T ss_pred             cCCHHH-H---H---HHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            111111 1   1   12334457777753 44555567777777788887755443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.42  E-value=0.0078  Score=52.80  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             cccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH-----HHh-CCCccCCCHHHHhhcCCEE-EEeeCC
Q 018213           66 EADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----LIS-LGAKYQPSPDEVAASCDVT-FAMLAD  137 (359)
Q Consensus        66 ~~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----~~~-~g~~~~~~~~~~~~~aDiv-i~~~p~  137 (359)
                      ..+++.-+++|+|+ |.||..+|+.|...+......-|+.+....     +.+ .+.....|++..+.+.|++ +++. .
T Consensus       162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-~  240 (351)
T COG5322         162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-M  240 (351)
T ss_pred             CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-c
Confidence            34577789999997 999999999999988877777765543222     111 1333333444444455554 4444 2


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc-CCeeecCCCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAPVSGS  194 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~  194 (359)
                      ++  ...|  +   -..+||+.+++|-+.-.-+++     ..+.. ++..++..+...
T Consensus       241 ~~--g~~I--~---pq~lkpg~~ivD~g~P~dvd~-----~vk~~~~V~Ii~GGlV~~  286 (351)
T COG5322         241 PK--GVEI--F---PQHLKPGCLIVDGGYPKDVDT-----SVKNVGGVRIIPGGLVEH  286 (351)
T ss_pred             CC--Ccee--c---hhhccCCeEEEcCCcCccccc-----ccccCCCeEEecCccccC
Confidence            21  1222  1   135899999998865443332     33333 477777655443

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.41  E-value=0.0056  Score=57.12  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             eEEEEc-CChhhHHHHHHHHHCCCcE---EEEcCCccchhHHHhCCC--ccCC-CHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           73 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLGA--KYQP-SPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        73 ~igiiG-~G~iG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +|+||| .|.+|..+.+.|.+.+|++   .++.+..+.-+.+...+.  ...+ +. +.+.++|++++|+| ........
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g-~~~s~~~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAG-GSVSKEFA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCC-HHHHHHHH
Confidence            489999 5999999999999988763   333343322222221221  1111 22 33478999999997 44555554


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +.+   ++.|..|||.|.
T Consensus        79 ---~~~---~~~G~~VID~ss   93 (339)
T TIGR01296        79 ---PKA---AKCGAIVIDNTS   93 (339)
T ss_pred             ---HHH---HHCCCEEEECCH
Confidence               332   346788998874

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.38  E-value=0.02  Score=55.45  Aligned_cols=113  Identities=21%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhH----HH-hCCCccC--CCHHHHhhcCCEEEEee--CC-hhHH
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDP----LI-SLGAKYQ--PSPDEVAASCDVTFAML--AD-PESA  141 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~----~~-~~g~~~~--~~~~~~~~~aDivi~~~--p~-~~~~  141 (359)
                      +|.|||.|..|.++|+.|.+.|++|+++|..+.. ...    +. ..|+...  .+ .+.+.++|+||..-  |. .+..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            4889999999999999999999999999975442 111    22 2366442  23 34567899888754  22 2233


Q ss_pred             HHHh------ccccccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCee
Q 018213          142 MDVA------CGKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       142 ~~~~------~~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ...-      .+..+++.. ++...+-|.-|.|+..+..-+...|+..+..+
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~  131 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKA  131 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCe
Confidence            2221      011222222 22223444446667777777777787765543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.36  E-value=0.027  Score=48.27  Aligned_cols=116  Identities=18%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ++.++|.|+|+|.+|..+++.|+..|. +++++|.+.-....+...        |-..+....+.++  +.|+-+.+.+.
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~   98 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD   98 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence            667899999999999999999999997 588998764322221110        1111111111111  34554444322


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      .-  ....   .++   ++.-.++|++. ........+.+.+.+.++.++.+...|
T Consensus        99 ~~--~~~~---~~~---~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G  145 (197)
T cd01492          99 DI--SEKP---EEF---FSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG  145 (197)
T ss_pred             Cc--cccH---HHH---HhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            11  1111   111   22334666653 345555667777777888887766554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.36  E-value=0.01  Score=56.21  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      +...+|.|+|+|.+|+.++..|+..|. +++++|++.-....+..+        |...+....+.++  +.++-+...+.
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            677899999999999999999999997 789999863222222111        1111111222221  23343333321


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      .-. ...+   .+   .++.-.+||+++-. +..-..+.+.+...++.++.+.+.+
T Consensus       213 ~~~-~~~~---~~---~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g  260 (376)
T PRK08762        213 RVT-SDNV---EA---LLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR  260 (376)
T ss_pred             cCC-hHHH---HH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence            111 1111   11   12334577777544 3334456677777788888765554

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.35  E-value=0.0058  Score=55.47  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=44.9

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHHh------hc-CCEEEEeeCC
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVA------AS-CDVTFAMLAD  137 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~------~~-aDivi~~~p~  137 (359)
                      +|.|+|. |.+|+.+++.|.+.|++|.+..|++++.......    ...-.+++.+++      .. +|.|+++.|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            3788886 9999999999999999999999988653211000    111122444555      45 8999888764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.33  E-value=0.1  Score=46.82  Aligned_cols=144  Identities=13%  Similarity=0.049  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ++..+|.|+|+|.+|+.+|..|+..| -+++++|.+.-....+..+        |-..+.-..+-+.  +.++-+...+.
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            67789999999999999999999999 5799998764332222111        1111111111111  23433333322


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec-----CCHH
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-----GDKS  212 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~  212 (359)
                      .- +.+-+   .+++.  .+-.+||++.- .+.....+.+.+...++.++...-.++.   .+ +..+-++     ....
T Consensus       108 ~i-~~e~~---~~ll~--~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~k---~d-p~~~~~~di~~t~~~p  176 (268)
T PRK15116        108 FI-TPDNV---AEYMS--AGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGGQ---ID-PTQIQVVDLAKTIQDP  176 (268)
T ss_pred             cc-ChhhH---HHHhc--CCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCcccC---CC-CCeEEEEeeecccCCh
Confidence            10 11111   11111  12346776633 4444556888888888888864322221   11 2222222     1344


Q ss_pred             HHHHHHHHHHH
Q 018213          213 LYNTVAPLLDI  223 (359)
Q Consensus       213 ~~~~v~~ll~~  223 (359)
                      ....++..|+.
T Consensus       177 la~~~R~~lr~  187 (268)
T PRK15116        177 LAAKLRERLKS  187 (268)
T ss_pred             HHHHHHHHHHH
Confidence            56788888876

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.33  E-value=0.015  Score=52.51  Aligned_cols=67  Identities=24%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-HHhCCCccC----CCH---HHHhhcCCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAKYQ----PSP---DEVAASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~~~----~~~---~~~~~~aDivi~~~p  136 (359)
                      .+++|||+|+|.+|.-=.+..+++|++|+++|++..+.++ +...|+..+    .+.   +++.+.-|.++-+++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~  255 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVS  255 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeee
Confidence            6789999999999988888888999999999998744444 343554321    121   233334566666664

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.014  Score=51.82  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL   46 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56678989986 8999999999999999999999987655443

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.30  E-value=0.025  Score=54.99  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=68.3

Q ss_pred             EEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee--CC-hhHHHHHh--
Q 018213           74 IGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVA--  145 (359)
Q Consensus        74 igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~--p~-~~~~~~~~--  145 (359)
                      |-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.+.++|+||..-  |. .+......  
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~   81 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER   81 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence            789999999998 99999999999999997543 22345555765532 2234456799988753  22 23333221  


Q ss_pred             ----ccccccccc-CCCCC-EEEeccCCChHHHHHHHHHHHhcCC
Q 018213          146 ----CGKHGAASG-MGPGK-GYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       146 ----~~~~~~~~~-l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                          .+..+++.. +++.. +-|.-|.|+..+..-+...|+..|.
T Consensus        82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~  126 (448)
T TIGR01082        82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL  126 (448)
T ss_pred             CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence                011223222 22223 3444456677777777777877664

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.30  E-value=0.018  Score=54.12  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=60.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh-CCCccCCCH-H--------HHh--hcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivi~~~p~~  138 (359)
                      .++.|+|+|.||...+..++..|. +|++.|+++++++..++ .+.....+. +        +.-  ..+|+++.|+...
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~  249 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP  249 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence            389999999999999999999995 67888999988877766 344322221 1        111  2489999998644


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ......       +..++++..++.++-.
T Consensus       250 ~~~~~a-------i~~~r~gG~v~~vGv~  271 (350)
T COG1063         250 PALDQA-------LEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHHH-------HHHhcCCCEEEEEecc
Confidence            333333       3566777766666554

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.015  Score=54.10  Aligned_cols=42  Identities=12%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +.++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.+
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~   47 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV   47 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            66688999987 8999999999999999999999987665443

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.04  Score=53.39  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCccCC--CHHHHhhcCCEEEEeeCC---hhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQP--SPDEVAASCDVTFAMLAD---PESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~~--~~~~~~~~aDivi~~~p~---~~~~  141 (359)
                      +.+++|.|+|.|..|.+.++.|.+.|++|+++|..+..  .+.+ +.|+....  ...+.++..|+||..-.-   .+..
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence            45678999999999999999999999999999975432  1223 23554422  223445678877664411   1222


Q ss_pred             HHHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213          142 MDVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       142 ~~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      .....      ...+++..+.+..+| |.-+.|+..+..-+...|+..|.
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  132 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW  132 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            22210      011232222222333 44456677777777777776554

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.02  Score=51.24  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+++..+.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV   46 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            66788999986 9999999999999999999999987654443

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.017  Score=50.95  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|+|. |.||+.+++.|.+.|++|++.+|++++.+.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE   46 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            56788999986 999999999999999999999988765443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.26  E-value=0.02  Score=50.88  Aligned_cols=92  Identities=12%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      ..++-|+|.|.++.++++.+...||+|+++|.+++....             .....++.++...  +   ...+   . 
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~--~---~~~~---~-  157 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDE--P---EAEV---A-  157 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCC--H---HHHH---h-
Confidence            368999999999999999999999999999976542110             0012333222211  1   2222   1 


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                         .+.+++.+|-++.+...|...+..++++....|+
T Consensus       158 ---~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YI  191 (246)
T TIGR02964       158 ---EAPPGSYFLVLTHDHALDLELCHAALRRGDFAYF  191 (246)
T ss_pred             ---cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEE
Confidence               2345667777778777788777777744444444

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=96.25  E-value=0.019  Score=50.33  Aligned_cols=84  Identities=17%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             EEEEcCCccchhHHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCC---ChHH
Q 018213           97 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDT  171 (359)
Q Consensus        97 V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~---~~~~  171 (359)
                      +.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|+|...+.+...       ..++.|..++-.+.+   ....
T Consensus         5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~   77 (229)
T TIGR03855         5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL   77 (229)
T ss_pred             EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence            4579999888777655 4677788999987 57999999998554444333       345667666656655   3456


Q ss_pred             HHHHHHHHHhcCCeee
Q 018213          172 SKLINGHIKATGASFL  187 (359)
Q Consensus       172 ~~~l~~~l~~~~~~~~  187 (359)
                      .+++.+..++.|..+.
T Consensus        78 ~~~l~~aA~~~g~~l~   93 (229)
T TIGR03855        78 RERLREVARSSGRKVY   93 (229)
T ss_pred             HHHHHHHHHhcCCEEE
Confidence            7778888887776543

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.24  E-value=0.011  Score=54.85  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHH-CCCc---EEEEcCCccchhH--HHhCCCccC-CCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNRTKSKCDP--LISLGAKYQ-PSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~-~g~~---V~~~d~~~~~~~~--~~~~g~~~~-~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ..++|||||+ |.+|+.+.+.|.. ..++   +..+......-+.  +........ .+.++ +.+.|++++++| ....
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~-~~~s   81 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAG-GEVS   81 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCC-hHHH
Confidence            3478999997 9999999999995 5666   4444322111111  111112211 13334 478999999997 4455


Q ss_pred             HHHhcccccccccCCCCCEEEeccCC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +.+.   ..+   .+.|..+||.|..
T Consensus        82 ~~~~---~~~---~~~G~~VID~Ss~  101 (347)
T PRK06728         82 RQFV---NQA---VSSGAIVIDNTSE  101 (347)
T ss_pred             HHHH---HHH---HHCCCEEEECchh
Confidence            5554   322   3578899999743

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.02  Score=52.29  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +.+++|.|.|. |.||..+++.|++.|++|++.+|+.+..+.+
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV   80 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            66788999986 9999999999999999999999987654443

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=96.21  E-value=0.0029  Score=51.42  Aligned_cols=90  Identities=11%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ..+++|++||+ ..    +++.|...+.++.++|++++.....  .+.......++++.+||+|+++-  +.-+.+-+  
T Consensus         9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTG--sTlvN~Ti--   78 (147)
T PF04016_consen    9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITG--STLVNGTI--   78 (147)
T ss_dssp             TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEEC--HHCCTTTH--
T ss_pred             cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEe--eeeecCCH--
Confidence            56689999996 23    6777877889999999998543221  11123446778999999999876  22333333  


Q ss_pred             cccccccCCCCCEEEeccCCCh
Q 018213          148 KHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                       +.+++..++++.++-.+.+.+
T Consensus        79 -~~iL~~~~~~~~vil~GpS~~   99 (147)
T PF04016_consen   79 -DDILELARNAREVILYGPSAP   99 (147)
T ss_dssp             -HHHHHHTTTSSEEEEESCCGG
T ss_pred             -HHHHHhCccCCeEEEEecCch
Confidence             445566666666666655544

; PDB: 3L5O_B 3NPG_A.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.21  E-value=0.023  Score=50.11  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCC-----------CcEEEEcCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRTK  104 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g-----------~~V~~~d~~~  104 (359)
                      +..+|.|||+|.+|+.+++.|+..|           .+++++|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            4578999999999999999999863           2889998753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.15  E-value=0.024  Score=52.90  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCC----------hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G----------~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +++++|||+|+-          .-...++..|...|.+|.+||+....-......++....+.+++++.||++++++ ..
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~t-ew  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINT-EW  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEec-cH
Confidence            778999999863          3467789999999999999998543211111114678899999999999999999 56


Q ss_pred             hHHHHHhcccccccccCCCCCEEEe
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                      ++.+.+-   -+.. .| ++.+|+|
T Consensus       387 ~ef~~~d---~~~~-~m-~~~~v~D  406 (414)
T COG1004         387 DEFRDLD---FEKL-LM-KTPVVID  406 (414)
T ss_pred             HHHhccC---hhhh-hc-cCCEEEe
Confidence            6766653   2222 34 4556665

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.14  E-value=0.018  Score=54.01  Aligned_cols=89  Identities=19%  Similarity=0.302  Sum_probs=54.0

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCccchh-HHHh---C-----------CCcc-CCCHHHHhhcCCEEE
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTF  132 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivi  132 (359)
                      +++|+|+| .|.+|+.+.+.|..+. +++.++.++..... .+..   .           ...+ ..+.++ +.++|+|+
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf   81 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVF   81 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEE
Confidence            47899998 7999999999998765 37777644332211 1110   0           0111 113444 47899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .++|.. ....+.   +.+   ...|..+|+.|..
T Consensus        82 ~a~p~~-~s~~~~---~~~---~~~G~~vIDls~~  109 (349)
T PRK08664         82 SALPSD-VAGEVE---EEF---AKAGKPVFSNASA  109 (349)
T ss_pred             EeCChh-HHHHHH---HHH---HHCCCEEEECCch
Confidence            999853 334443   222   2357778888653

>PRK08223 hypothetical protein; Validated

Probab=96.14  E-value=0.033  Score=50.31  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHH----HHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPD----EVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~----~~~~~aDivi~~~  135 (359)
                      ++..+|.|||+|.+|+.++..|+..|. ++.++|.+.-....+..+        |-..+....    ++-...+|..+..
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            677899999999999999999999996 688888764332222211        211111122    2222344443333


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCC-hHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      ..+++.         ..+.++.-.+|||++-.. ...-..+.+.....++.++.+.+.+
T Consensus       105 ~l~~~n---------~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g  154 (287)
T PRK08223        105 GIGKEN---------ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG  154 (287)
T ss_pred             ccCccC---------HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence            222111         111223345777775443 2344456666777787777765544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.13  E-value=0.019  Score=58.71  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .++++|+|||.|..|.+.|..|+..|++|+++++.+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            356899999999999999999999999999999864

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.033  Score=54.24  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCc-cCCCHHHHhhcCCEEEEee--C-ChhHHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAML--A-DPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivi~~~--p-~~~~~~~~  144 (359)
                      .+++|+|+|+|.-|.+.++.|.. |.+|+++|..+.....+.+. ... ......+.+.++|+||..-  | ..+.....
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            35789999999999999999995 99999999654432222211 111 1111234566899888754  2 22223222


Q ss_pred             h------ccccccc-ccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213          145 A------CGKHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       145 ~------~~~~~~~-~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      -      .++-+++ ..+++..+| |.-|.|+..+..-+...|+..|..
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~  132 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD  132 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence            1      0112222 222222344 333556666676677777765543

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.035  Score=53.06  Aligned_cols=107  Identities=10%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh--hcCCEEEEe--eCCh-hHHH---H
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAM--LADP-ESAM---D  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivi~~--~p~~-~~~~---~  143 (359)
                      |+|.|+|+|..|.++|+.|. .|++|+++|..+... ...+.|+... . ++..  .++|+||..  +|.+ +...   .
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            57999999999999999999 999999999654322 1223355543 2 2233  468988765  2322 2222   2


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG  183 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~  183 (359)
                      ++ +..+++..+.+..+-|.-|.|+..+..-+...|...+
T Consensus        77 i~-~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g  115 (401)
T PRK03815         77 LI-SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG  115 (401)
T ss_pred             Hh-hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence            22 1122222222323444445666666666667777654

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.019  Score=50.72  Aligned_cols=39  Identities=21%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|+++..
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~   43 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA   43 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            56688999987 9999999999999999999999986543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.12  E-value=0.022  Score=50.59  Aligned_cols=40  Identities=25%  Similarity=0.257  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~   48 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA   48 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            56789999986 99999999999999999999999875443

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.11  E-value=0.014  Score=55.25  Aligned_cols=63  Identities=22%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-HHhCCCc-cCCC---HHHHhhcCCEEEE
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAK-YQPS---PDEVAASCDVTFA  133 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~-~~~~---~~~~~~~aDivi~  133 (359)
                      +++|||||.|..|+.++..+.+.|++|+++|.+++.... +.+.-+. ...+   +.++++.+|+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            378999999999999999999999999999987654222 2211110 1223   4567788998754

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.08  E-value=0.024  Score=50.36  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +++++|.|.|. |.||+.+++.|.+.|++|++++|+++..+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~   50 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA   50 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            67789999986 899999999999999999999998754443

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.06  E-value=0.01  Score=58.93  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNR  102 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~  102 (359)
                      ++..+|.|||+|.+|..+|+.|++.|. +++++|.
T Consensus       336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            567899999999999999999999996 5777765

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.079  Score=51.41  Aligned_cols=112  Identities=17%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccch--hHHHhCCCccC-C-CHHHHhhcCCEEEEee--C-ChhHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAML--A-DPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivi~~~--p-~~~~~~  142 (359)
                      ++|.|||.|..|.+.++.|...  |++|+++|..+...  +.+. .|+... . ...+.+.++|+||...  | ..+...
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~   86 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ   86 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence            6799999999999999999887  58899999754321  2343 266542 1 1234457899887754  2 223333


Q ss_pred             HHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213          143 DVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       143 ~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ....      +..+++..+.+..+| |.-|.|+..+..-+...|...|.
T Consensus        87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  135 (438)
T PRK04663         87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV  135 (438)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence            2210      111232222233344 44455666666666677776544

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.04  E-value=0.015  Score=53.93  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=54.9

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC---cEEEEcCCccchhH--HHhCCCccCCCHHHH-hhcCCEEEEeeCChhHHH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDP--LISLGAKYQPSPDEV-AASCDVTFAMLADPESAM  142 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~--~~~~g~~~~~~~~~~-~~~aDivi~~~p~~~~~~  142 (359)
                      ++++|+|||+ |.+|..+.+.|....|   ++..+....+.-+.  +......+. ++++. ..++|++++|+|. ....
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~-~~s~   80 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGR-EASA   80 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCH-HHHH
Confidence            4588999997 9999999999998433   55544332211111  111112222 33343 2689999999974 3444


Q ss_pred             HHhcccccccccCCCCCEEEeccCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .+.   +++   .+.|..+||.|..
T Consensus        81 ~~~---~~~---~~~g~~VIDlS~~   99 (336)
T PRK08040         81 AYA---EEA---TNAGCLVIDSSGL   99 (336)
T ss_pred             HHH---HHH---HHCCCEEEECChH
Confidence            554   333   3468899999743

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.03  E-value=0.023  Score=50.57  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|.+.+|+++..+..
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV   47 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence            56688999987 9999999999999999999999987654443

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.043  Score=47.96  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++++|.|.|. |.+|..+++.|.+.|++|++.+|++++..
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~   45 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS   45 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH
Confidence            56789999985 99999999999999999999999876543

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.026  Score=52.62  Aligned_cols=85  Identities=19%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      +++++|.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+.       +.+  ...++.++.  +.+..+++.++
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~v~~~~   76 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEAVQAAA   76 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHHHHHHH
Confidence            56688999986 9999999999999999999999987654433221       111  122333332  33445566665


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +.+.+.+.+=.++||.+
T Consensus        77 ---~~~~~~~g~iD~lInnA   93 (334)
T PRK07109         77 ---DRAEEELGPIDTWVNNA   93 (334)
T ss_pred             ---HHHHHHCCCCCEEEECC
Confidence               44444444435666664

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.02  E-value=0.019  Score=50.34  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM   45 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            55688999986 8899999999999999999999987655433

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.00  E-value=0.016  Score=41.72  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=31.2

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      +|.|||.|.+|..+|..|+..|.+|+++.+++.-
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5889999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.00  E-value=0.014  Score=57.57  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ..+++|.|.|. |.||+.+++.|.+.|++|++++|+.++.+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l  120 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL  120 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            35678889986 9999999999999999999999987765443

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.023  Score=51.41  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.++++.|.| .|.||+++|+.|++.|++|++.+|+++..+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~   44 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR   44 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            6678888887 589999999999999999999998865544

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=95.99  E-value=0.021  Score=50.67  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=45.5

Q ss_pred             cCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCC
Q 018213           78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD  137 (359)
Q Consensus        78 G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~  137 (359)
                      |+|-||+.+...|.+.||+|++..|++.+........+...+.+++... .+|+||.-.-.
T Consensus         6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~   66 (297)
T COG1090           6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE   66 (297)
T ss_pred             cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence            6799999999999999999999999987765544333444445556555 69999976643

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.98  E-value=0.018  Score=51.27  Aligned_cols=40  Identities=23%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ..+|+|.|+|. |.+|+.+++.|...|++|++..|++++..
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   55 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK   55 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            55689999995 99999999999999999999988876543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.97  E-value=0.077  Score=48.29  Aligned_cols=109  Identities=11%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH---HHHhc--
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC--  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~---~~~~~--  146 (359)
                      ++++|||.-.==..+++.|.+.|++|.+|.-.... ..+  .|+....+.++.+.++|+||+-+|-+..-   +..+.  
T Consensus         2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~   78 (287)
T TIGR02853         2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE   78 (287)
T ss_pred             cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence            67999999999999999999999999988753210 111  15666767777789999999999844321   11110  


Q ss_pred             ---ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 ---GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ---~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                         -++++++.++++.++. ++...+    .+...++++|+.+++
T Consensus        79 ~~~l~~~~l~~~~~~~~~~-~G~~~~----~l~~~a~~~gi~v~~  118 (287)
T TIGR02853        79 KVVLTPELLESTKGHCTIY-VGISNP----YLEQLAADAGVKLIE  118 (287)
T ss_pred             CccccHHHHHhcCCCCEEE-EecCCH----HHHHHHHHCCCeEEE
Confidence               0245667777655433 333333    344466677877773

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.97  E-value=0.028  Score=57.27  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .++++|.|||.|..|...|..|+..|++|++|++.+
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            357999999999999999999999999999999875

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.026  Score=50.18  Aligned_cols=40  Identities=25%  Similarity=0.271  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.+++|.|.|. |.||+.+++.|.+.|++|++.+|+++..+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~   43 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD   43 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            55688999985 89999999999999999999999875443

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.95  E-value=0.037  Score=49.49  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL   46 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56688888886 8899999999999999999999987655443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.95  E-value=0.029  Score=49.22  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.+++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~   43 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE   43 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence            45578999986 99999999999999999999999876543

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.92  E-value=0.059  Score=56.49  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCChhhHHH-HHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee--C-ChhHHHH
Q 018213           70 LPGRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--A-DPESAMD  143 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~i-a~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~--p-~~~~~~~  143 (359)
                      +.++|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||..-  | ..+....
T Consensus         3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~   82 (809)
T PRK14573          3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLS   82 (809)
T ss_pred             CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHH
Confidence            34579999999999997 9999999999999997543 23445556765532 2335567899988754  2 2233322


Q ss_pred             Hhc------ccccccccC-CC-CCEEEeccCCChHHHHHHHHHHHhcCC
Q 018213          144 VAC------GKHGAASGM-GP-GKGYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       144 ~~~------~~~~~~~~l-~~-~~~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ...      +..+++..+ +. ..+-|.-|.|+..+..-+...|+..|.
T Consensus        83 a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         83 AKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             HHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            210      111222222 22 234444466677777777777877654

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.027  Score=50.01  Aligned_cols=42  Identities=21%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+.+
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL   49 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            56788999987 8999999999999999999999987654443

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.03  Score=49.68  Aligned_cols=41  Identities=17%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +++++|.|.|. |.||..+++.|.+.|++|++.+|+++..+.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~   46 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEE   46 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            56789999986 899999999999999999999998765443

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.029  Score=49.19  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +.+++|.|+|. |.+|..+++.|...|++|++.+|++++.+.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~   45 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEE   45 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHH
Confidence            44578999985 999999999999999999999998765443

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.89  E-value=0.027  Score=51.59  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCc---EEEE--cCCccch-hHHHhCCCccCC--CHHHHhhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~--d~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ++|||+|. |.+|+.+.+.|....+.   +.++  .|+..+. ..+....+..-.  ......+++|+++.|.|. ...+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~-~~s~   80 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGG-SVSK   80 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCch-HHHH
Confidence            68999985 99999999999985542   3333  3333322 222222122222  112334589999999974 4445


Q ss_pred             HHhcccccccccCCCCCEEEeccCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .+.   +++   .+.|.++||.++.
T Consensus        81 ~~~---p~~---~~~G~~VIdnsSa   99 (334)
T COG0136          81 EVE---PKA---AEAGCVVIDNSSA   99 (334)
T ss_pred             HHH---HHH---HHcCCEEEeCCcc
Confidence            554   332   4567888887654

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.034  Score=50.00  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +++++|.|.|. |.||..+++.|.+.|++|++.+|++++.+..
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET   45 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            55688999986 9999999999999999999999987655443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.88  E-value=0.089  Score=45.09  Aligned_cols=116  Identities=15%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----------CCCccCCC----HHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKYQPS----PDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g~~~~~~----~~~~~~~aDivi~  133 (359)
                      ++..+|.|||+|.+|..+++.|...|. +++++|.+.-....+..          .|...+..    +.++  +.++-+.
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l--Np~v~i~   94 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL--NPNVKLS   94 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH--CCCCEEE
Confidence            666899999999999999999999996 58899875322222111          11111111    2222  3455444


Q ss_pred             eeCChhH-HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          134 MLADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       134 ~~p~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      ..+.... .....   .++   +++-.+||++ .........+.+.+.+.++.++.+...|
T Consensus        95 ~~~~~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G  148 (198)
T cd01485          95 IVEEDSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG  148 (198)
T ss_pred             EEecccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            4432111 01111   122   2233567766 3345555667788888888887765544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02427 UDP-apiose/xylose synthase

Probab=95.87  E-value=0.021  Score=54.34  Aligned_cols=67  Identities=16%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhC-------CCcc-------CCCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAKY-------QPSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~aDivi  132 (359)
                      .+.|||.|.|. |-||+.+++.|.+. |++|++.+|+.++...+...       ++..       ..++.++++++|+||
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi   91 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI   91 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence            66789999985 99999999999988 59999999876544333211       1111       123456677889887


Q ss_pred             Eee
Q 018213          133 AML  135 (359)
Q Consensus       133 ~~~  135 (359)
                      -+.
T Consensus        92 HlA   94 (386)
T PLN02427         92 NLA   94 (386)
T ss_pred             Ecc
Confidence            655

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.03  Score=49.29  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~   45 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA   45 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4567888885 999999999999999999999998765443

>PRK08589 short chain dehydrogenase; Validated

Probab=95.86  E-value=0.038  Score=49.81  Aligned_cols=39  Identities=15%  Similarity=0.032  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+ +..+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~   43 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS   43 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH
Confidence            56788989987 889999999999999999999987 4433

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.035  Score=48.70  Aligned_cols=85  Identities=9%  Similarity=0.043  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEE--eeCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA--MLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~--~~p~~~~~~~~~  145 (359)
                      ++++++.|.|. +.||.++++.|++.|++|.+.+|++++.+...+.       ..+.  ..+++..  -+..+.+++.++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-------i~~~--~~~~~~~~~D~~~~~~~~~~~   73 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ-------CSAL--TDNVYSFQLKDFSQESIRHLF   73 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhc--CCCeEEEEccCCCHHHHHHHH
Confidence            56688999987 5599999999999999999999987665544321       1110  1233222  233566677776


Q ss_pred             cccccccccCC-CCCEEEecc
Q 018213          146 CGKHGAASGMG-PGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~-~~~~vi~~s  165 (359)
                         +++.+.+. +=.++||..
T Consensus        74 ---~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         74 ---DAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             ---HHHHHHhCCCCCEEEECC
Confidence               55544443 224566654

>PRK06182 short chain dehydrogenase; Validated

Probab=95.83  E-value=0.051  Score=48.90  Aligned_cols=40  Identities=23%  Similarity=0.160  Sum_probs=34.1

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++.|.|. |.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~   43 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL   43 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            477889985 9999999999999999999999987655443

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.83  E-value=0.26  Score=43.27  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeC-
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA-  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p-  136 (359)
                      ++..+|.|+|+|.+|+.+++.|+..|. +++++|.+.-....+..+        |-..+.-..+-+.  +.++-+...+ 
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            667899999999999999999999996 788998764332222111        1111111111111  2333333332 


Q ss_pred             -Chh-HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC-----
Q 018213          137 -DPE-SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-----  209 (359)
Q Consensus       137 -~~~-~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  209 (359)
                       .++ ....++         ..+-.+||++.- .......+.+.+.+.++.++...-.|...   + +.-+-+..     
T Consensus        89 ~i~~~~~~~l~---------~~~~D~VvdaiD-~~~~k~~L~~~c~~~~ip~I~s~g~g~~~---d-p~~i~i~di~~t~  154 (231)
T cd00755          89 FLTPDNSEDLL---------GGDPDFVVDAID-SIRAKVALIAYCRKRKIPVISSMGAGGKL---D-PTRIRVADISKTS  154 (231)
T ss_pred             ecCHhHHHHHh---------cCCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeCCcCCC---C-CCeEEEccEeccc
Confidence             121 111222         112347777643 34444567788888888888754333321   1 11122221     


Q ss_pred             CHHHHHHHHHHHHHhC----CCeEEeCc
Q 018213          210 DKSLYNTVAPLLDIMG----KSRFYLGD  233 (359)
Q Consensus       210 ~~~~~~~v~~ll~~lg----~~~~~~g~  233 (359)
                      .......++.-|+.-+    ..+++..+
T Consensus       155 ~~pla~~~R~~Lrk~~~~~~~~~v~S~E  182 (231)
T cd00755         155 GDPLARKVRKRLRKRGIFFGVPVVYSTE  182 (231)
T ss_pred             cCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence            2344567777777643    44666655

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.83  E-value=0.025  Score=52.89  Aligned_cols=89  Identities=17%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCC-CcEEEE-cCCccchhHHHhC-------CC----c--cC-CCHHHHhhcCCEEEEe
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLISL-------GA----K--YQ-PSPDEVAASCDVTFAM  134 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~-d~~~~~~~~~~~~-------g~----~--~~-~~~~~~~~~aDivi~~  134 (359)
                      ++|+|+|+ |.+|+.+++.|...+ +++... ++..+..+.+.+.       +.    .  .+ ...++...++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999998866 577655 4432221111110       00    0  01 1112345789999999


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +|.. ....+.   +.+   ...|..+|+.|..
T Consensus        81 ~p~~-~s~~~~---~~~---~~~G~~VIDlsg~  106 (341)
T TIGR00978        81 LPSE-VAEEVE---PKL---AEAGKPVFSNASN  106 (341)
T ss_pred             CCHH-HHHHHH---HHH---HHCCCEEEECChh
Confidence            9844 444443   222   3457778877644

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=95.83  E-value=0.092  Score=42.05  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             HHHHHHHHHCCCcEEEEcCCccc----hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCC
Q 018213           84 TPMAQNLLKAGCDVTVWNRTKSK----CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK  159 (359)
Q Consensus        84 ~~ia~~l~~~g~~V~~~d~~~~~----~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~  159 (359)
                      =..+..|.+.|++|.+=.-....    -+.+.+.|+...++.++++.+||+|+-.-|.+          .+....|++|+
T Consensus        17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~----------~~e~~~l~~g~   86 (136)
T PF05222_consen   17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS----------EEELALLKPGQ   86 (136)
T ss_dssp             HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-------------GGGGGGS-TTC
T ss_pred             HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC----------HHHHhhcCCCc
Confidence            34577888899999985443222    24566679999988889999999998765422          23346789999


Q ss_pred             EEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCC
Q 018213          160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS  194 (359)
Q Consensus       160 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  194 (359)
                      +++..  ..+.....+.+.+.++++..++...+..
T Consensus        87 ~li~~--~~~~~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   87 TLIGF--LHPAQNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EEEEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             EEEEe--eccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence            99954  4444577888888889999988655443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.82  E-value=0.028  Score=58.64  Aligned_cols=69  Identities=29%  Similarity=0.391  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc---------------------hhHHHhCCCcc--------CC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKY--------QP  119 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~--------~~  119 (359)
                      -++++|+|||.|.-|.+-|..|.+.||.|++|.|+..-                     ++-+.++|+.+        .-
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence            56799999999999999999999999999999886431                     11122345433        24


Q ss_pred             CHHHHhhcCCEEEEeeCC
Q 018213          120 SPDEVAASCDVTFAMLAD  137 (359)
Q Consensus       120 ~~~~~~~~aDivi~~~p~  137 (359)
                      +++++.+.-|.|++|+-.
T Consensus      1863 s~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGS 1880 (2142)
T ss_pred             cHHHHhhccCeEEEEeCC
Confidence            788999999999999843

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.03  Score=49.89  Aligned_cols=42  Identities=12%  Similarity=0.110  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+++..+..
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~   47 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERA   47 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56788888885 8999999999999999999999987654443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.80  E-value=0.029  Score=49.51  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~   44 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER   44 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            55688999986 999999999999999999999998765443

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.80  E-value=0.03  Score=51.23  Aligned_cols=66  Identities=23%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH---HHhC------------CCccCCCHHHHhhcCCEEEE
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivi~  133 (359)
                      .+++|+|-|+ |-||+.+.+.|...||.|.+.-|+++..+.   +.+.            .+.-..++++++..||.|+-
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            5689999997 999999999999999999999998876322   2221            12234578899999999986


Q ss_pred             ee
Q 018213          134 ML  135 (359)
Q Consensus       134 ~~  135 (359)
                      +.
T Consensus        85 ~A   86 (327)
T KOG1502|consen   85 TA   86 (327)
T ss_pred             eC
Confidence            54

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.80  E-value=0.061  Score=52.48  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-h----hHHHhCCCccCC--CHH-----HHhhcCCEEEEeeCCh--
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQP--SPD-----EVAASCDVTFAMLADP--  138 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~~--~~~-----~~~~~aDivi~~~p~~--  138 (359)
                      +|.|||.|..|.+.|+.|.+.|++|.++|+.+.. .    +.+.+.|+....  ..+     +.+.+.|.|+....-+  
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            5899999999999999999999999999976532 1    124445665421  111     3567889988754222  


Q ss_pred             -hHHHHHhc------cccccc-ccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213          139 -ESAMDVAC------GKHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       139 -~~~~~~~~------~~~~~~-~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                       +.....-.      +..+++ ..+.+..+| |.-|.|+..+..-+...|...|.
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~  136 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL  136 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence             22221110      011111 222233344 44455666666666667766543

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.043  Score=49.20  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++++++.|.|. |.||..+++.|...|++|++.+|+++..+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   47 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD   47 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            366788999987 89999999999999999999999865443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.79  E-value=0.057  Score=47.96  Aligned_cols=92  Identities=26%  Similarity=0.278  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CC----CHHHH-----hhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QP----SPDEV-----AASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~----~~~~~-----~~~aDivi~~~p~~  138 (359)
                      ..+.+|.|+|.|.+|..+++.+...|.+|++.++++++.+.+.+.|... .+    +..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            3467899999999999999999999999999998876665555444321 10    11111     13468887777532


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ......       +..++++..+++.+..
T Consensus       213 ~~~~~~-------~~~l~~~G~~v~~~~~  234 (271)
T cd05188         213 ETLAQA-------LRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HHHHHH-------HHhcccCCEEEEEccC
Confidence            333222       3455666666666543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.78  E-value=0.042  Score=48.87  Aligned_cols=42  Identities=14%  Similarity=0.134  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +.++++.|.|. |.+|..+++.|.+.|++|++.+|+.+..+..
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA   46 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            55678989985 9999999999999999999999987655443

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.77  E-value=0.091  Score=48.09  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             cCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCC--ccCCCHHHHhhcCCEEEEe
Q 018213           68 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGA--KYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        68 ~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~--~~~~~~~~~~~~aDivi~~  134 (359)
                      .+++.+|+++|-|   ++..+++..++.+|++|.+..+..-.     .+.+.+.|.  ..+++++++++++|+|..-
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence            3788999999985   99999999999999999998864321     112223343  4578999999999998763

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=95.77  E-value=0.14  Score=46.65  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=74.6

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~  145 (359)
                      +..||.|.|. |..|+..-+.+..+|-+|. .+++... .++.  .|+..+.++.|+...  .|+.++++| ...+...+
T Consensus        11 ~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~-~~~i--~G~~~y~sv~dlp~~~~~DlAvI~vP-a~~v~~al   86 (300)
T PLN00125         11 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH--LGLPVFNTVAEAKAETKANASVIYVP-PPFAAAAI   86 (300)
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCC-CceE--cCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH
Confidence            4478999995 9999999999999998765 4554421 1111  378888999998865  799999998 66777776


Q ss_pred             cccccccccCCCCCEEEeccCCChHH--HHHHHHHHHhcCCeeecCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFLEAPV  191 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~--~~~l~~~l~~~~~~~~~~~~  191 (359)
                         ++..+.=-+..++  .+.+.+..  .+.+.+..++.++++++...
T Consensus        87 ---~e~~~~Gvk~~vI--isaGf~e~g~~~~~~~~ar~~girviGPNc  129 (300)
T PLN00125         87 ---LEAMEAELDLVVC--ITEGIPQHDMVRVKAALNRQSKTRLIGPNC  129 (300)
T ss_pred             ---HHHHHcCCCEEEE--ECCCCCcccHHHHHHHHHhhcCCEEECCCC
Confidence               4444321122333  35554333  34444446677888877443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.76  E-value=0.05  Score=51.11  Aligned_cols=36  Identities=22%  Similarity=0.462  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++..+|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            677899999999999999999999996 688888764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.76  E-value=0.037  Score=54.11  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .++++|.|||.|..|...|..|+..|++|+++++.+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            356899999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.76  E-value=0.042  Score=48.70  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      |+|.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~   39 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE   39 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            56889985 999999999999999999999998765443

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=95.75  E-value=0.048  Score=47.60  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      .++|.+.|-|+ ..||.++|+.|.+.|++|++..|+.+++++++.+       +.+  ..+..+.+-+.+...++.++  
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~-------~~~--~~~~~~~~DVtD~~~~~~~i--   72 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE-------IGA--GAALALALDVTDRAAVEAAI--   72 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh-------hcc--CceEEEeeccCCHHHHHHHH--
Confidence            44566777787 6799999999999999999999999888877643       111  23445555555566777777  


Q ss_pred             cccccccCCCCCEEEeccC
Q 018213          148 KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~  166 (359)
                       +.+.+...+=.++||-+.
T Consensus        73 -~~~~~~~g~iDiLvNNAG   90 (246)
T COG4221          73 -EALPEEFGRIDILVNNAG   90 (246)
T ss_pred             -HHHHHhhCcccEEEecCC
Confidence             555555555567777643

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.74  E-value=0.049  Score=50.62  Aligned_cols=89  Identities=20%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHH-HHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD-EVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      .+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+.+.|+...-+.. +.-+..|+++.+...+.    .+   
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~----~~---  237 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG----LV---  237 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH----HH---
Confidence            46789999999999999999999999999999988887777777764332211 11123577776664332    22   


Q ss_pred             ccccccCCCCCEEEecc
Q 018213          149 HGAASGMGPGKGYVDVS  165 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s  165 (359)
                      ...++.++++..++..+
T Consensus       238 ~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       238 PPALEALDRGGVLAVAG  254 (329)
T ss_pred             HHHHHhhCCCcEEEEEe
Confidence            23345666776666554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.74  E-value=0.047  Score=50.26  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ..+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+...+..  ..+..++.-...|+|+-++..+......+  
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~--  218 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV--  218 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH--
Confidence            3467899999999999999999999987 556677665544332221  11111111124678887775333233333  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                           +.++++..++.++
T Consensus       219 -----~~l~~~G~iv~~G  231 (308)
T TIGR01202       219 -----RRLAKGGEIVLAG  231 (308)
T ss_pred             -----HhhhcCcEEEEEe
Confidence                 4566666666554

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.73  E-value=0.067  Score=52.35  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chh---HHHhCCCcc-CCCHHHHhhcCCEEEEee--CCh-hH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML--ADP-ES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivi~~~--p~~-~~  140 (359)
                      .++++|+|+|+|.-|.+.++.|.+.|.+|+++|.+.. ...   .+.+.+... .....+.+.++|+||..-  |.+ +.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            3467899999999999999999999999999995432 211   233222111 112234567899998754  322 22


Q ss_pred             HHHHhc------ccccc-ccc-CC-----CCCEEEeccCCChHHHHHHHHHHHhcC
Q 018213          141 AMDVAC------GKHGA-ASG-MG-----PGKGYVDVSTVDGDTSKLINGHIKATG  183 (359)
Q Consensus       141 ~~~~~~------~~~~~-~~~-l~-----~~~~vi~~s~~~~~~~~~l~~~l~~~~  183 (359)
                      ......      +.-++ +.. +.     ...+-|.-|.|+..+..-+...|+..+
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            222210      11122 112 21     123334445566666666777776654

>PRK06398 aldose dehydrogenase; Validated

Probab=95.73  E-value=0.044  Score=48.95  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+..
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            66788999986 89999999999999999999998754

>PRK06194 hypothetical protein; Provisional

Probab=95.72  E-value=0.034  Score=50.36  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   45 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDR   45 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            56688989885 899999999999999999999997654443

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.72  E-value=0.038  Score=49.03  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +++++|.|.| .|.+|+.+++.|.+.|++|++.+|+++..+.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~   43 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAA   43 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            4457899998 5999999999999999999999998765443

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.062  Score=47.78  Aligned_cols=40  Identities=18%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.+++|.|+|. |.||..+++.|.+.|++|++.+|++...+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~   45 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK   45 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            66788999997 99999999999999999999999865443

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=95.71  E-value=0.035  Score=48.81  Aligned_cols=109  Identities=13%  Similarity=0.129  Sum_probs=76.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCccchhHHHhC----------CCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      ..+.|+|.|..+-.......+.-   .+|.+|+|+++..+.+++.          .+..++++++++..+|||+.|++. 
T Consensus       139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls-  217 (333)
T KOG3007|consen  139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS-  217 (333)
T ss_pred             eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc-
Confidence            45789999999998888765433   3799999998877766651          234577899999999999999863 


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                        ++.+++     ..+++||+.+=-++.-.|+.- +..+.+-+.+..|+|.
T Consensus       218 --tePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDs  260 (333)
T KOG3007|consen  218 --TEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDS  260 (333)
T ss_pred             --CCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEec
Confidence              445552     457899987766666666543 3333333445567764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.71  E-value=0.031  Score=49.29  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=34.1

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      +.+++|.|.| .|.+|..+++.|.+.|++|++.+|++++.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~   43 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA   43 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            5668899998 59999999999999999999999986543

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.062  Score=49.09  Aligned_cols=42  Identities=14%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~   49 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAAL   49 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            66788999986 8999999999999999999999987655544

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.69  E-value=0.017  Score=53.27  Aligned_cols=64  Identities=25%  Similarity=0.368  Sum_probs=45.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~  135 (359)
                      |+|.|.|. |.+|+.+++.|.+.|++|++.+|+++....+...++..       ..++.++++.+|+|+.+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            46889985 99999999999999999999999876543322222221       123445666788887765

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06813 homoserine dehydrogenase; Validated

Probab=95.67  E-value=0.06  Score=50.18  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=62.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--------CCcEE---EEcCCccchh-------HHHhCC--Cc-----cCCCHHHHh-
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCD-------PLISLG--AK-----YQPSPDEVA-  125 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--------g~~V~---~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~~-  125 (359)
                      .+|+|+|+|.+|+.+++.|.+.        |.++.   +.+++.....       .+.+.+  ..     .....++.+ 
T Consensus         3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~   82 (346)
T PRK06813          3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT   82 (346)
T ss_pred             eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence            6799999999999999998643        44433   3355432211       111100  00     111222222 


Q ss_pred             h--cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCC-hHHHHHHHHHHHhcCCeeec-CCCCCC
Q 018213          126 A--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFLE-APVSGS  194 (359)
Q Consensus       126 ~--~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~-~~~~~~  194 (359)
                      .  +.|||+-|+|......+.-  ..-+..+++.|..||...-.. ....+++.+..++++..+.. +.+.++
T Consensus        83 ~~~~~dVvVe~T~s~~~~~e~a--~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG  153 (346)
T PRK06813         83 DNISGTVLVESTVTNLKDGNPG--KQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA  153 (346)
T ss_pred             CCCCCCEEEECCCCccCCchHH--HHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence            2  4799999987431111111  011245677888888553322 12335666666677776653 444433

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.67  E-value=0.028  Score=52.67  Aligned_cols=87  Identities=15%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             CeEEEEcC-ChhhHHHHH-HHHHCCCc---EEEEcCCc--cchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~-~l~~~g~~---V~~~d~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ++|+|||+ |.+|+.+.+ .|....++   +..++...  .+...+........  .+.+ .+.++|++++|+| ....+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~-~~~s~   79 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQG-GDYTN   79 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCC-HHHHH
Confidence            67999997 999999998 56666665   66554421  11111211111122  2233 3578999999997 44555


Q ss_pred             HHhcccccccccCCCC--CEEEeccC
Q 018213          143 DVACGKHGAASGMGPG--KGYVDVST  166 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~--~~vi~~s~  166 (359)
                      .+.   ..+   .+.|  .++||.|.
T Consensus        80 ~~~---~~~---~~aG~~~~VID~Ss   99 (369)
T PRK06598         80 EVY---PKL---RAAGWQGYWIDAAS   99 (369)
T ss_pred             HHH---HHH---HhCCCCeEEEECCh
Confidence            555   333   2456  67999874

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.07  Score=49.22  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||.++|+.|++.|++|++.+|+.++.+.
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~   53 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEA   53 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            67788888885 889999999999999999999998765443

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.04  Score=49.29  Aligned_cols=41  Identities=27%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|+++..+.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~   49 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDE   49 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            56688999986 689999999999999999999998765443

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.66  E-value=0.04  Score=50.51  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=51.2

Q ss_pred             cCCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213           68 DELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        68 ~~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+++.||++||-   +++..+++..++.+|++|.++.+..-....+.  ....+++++++++++|+|....
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence            378899999987   58999999999999999999886432211111  2356789999999999987743

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.65  E-value=0.044  Score=50.52  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHH---HhC-----CC-------ccCCCHHHHhhcCCEEEE
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL---ISL-----GA-------KYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~---~~~-----g~-------~~~~~~~~~~~~aDivi~  133 (359)
                      ++++|.|.| +|-||+.+++.|.+.|++|.+.+|+.......   ...     .+       .-..+.+++++++|+||.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            357899998 59999999999999999999888876532211   100     11       111245566777888877


Q ss_pred             ee
Q 018213          134 ML  135 (359)
Q Consensus       134 ~~  135 (359)
                      +.
T Consensus        83 ~A   84 (322)
T PLN02662         83 TA   84 (322)
T ss_pred             eC
Confidence            65

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.61  E-value=0.054  Score=52.05  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcC----------ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~----------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +.+++|+|+|+          ..-...+++.|...|.+|.+||+...... ..  ......++++.++++|+|+++++. 
T Consensus       311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~-  386 (411)
T TIGR03026       311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDH-  386 (411)
T ss_pred             ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCC-
Confidence            67799999997          34678899999999999999998643321 11  122356888999999999999964 


Q ss_pred             hHHHHHhcccccccccCCCCCEEEec
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~  164 (359)
                      ++.+.+-+  +.+...|+ ..+++|.
T Consensus       387 ~~~~~~~~--~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 DEFKDLDL--EKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHhccCH--HHHHHhcC-CCEEEeC
Confidence            44443310  23333343 4477774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.61  E-value=0.035  Score=51.29  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=23.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCC----CcEEEEc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAG----CDVTVWN  101 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g----~~V~~~d  101 (359)
                      +|||+|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5999999999999999988753    6776554

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.60  E-value=0.046  Score=48.25  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ++++++.|+|. |.||..+++.|.+.|++|++.+|++++.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~   43 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE   43 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            55688999997 99999999999999999999999875543

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.044  Score=48.84  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|+|. |.+|..+++.|.+.|++|++.+|+++..+.+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            66789999986 9999999999999999999999986554433

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.60  E-value=0.032  Score=52.41  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=34.3

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ..+|+|.|.| +|-||+.+++.|.+.|++|++.+|++...
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~   47 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKS   47 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            7779999998 59999999999999999999988876543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.59  E-value=0.054  Score=48.39  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|+.+..+.+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l   45 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL   45 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45678888886 8899999999999999999999987654444

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.59  E-value=0.045  Score=48.73  Aligned_cols=40  Identities=20%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~   50 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE   50 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            56688999985 99999999999999999999999865443

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.083  Score=47.21  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   47 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS   47 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            66788999987 789999999999999999999998765443

>PRK05717 oxidoreductase; Validated

Probab=95.56  E-value=0.063  Score=47.70  Aligned_cols=40  Identities=15%  Similarity=0.108  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ++++++.|.|. |.||+.+++.|.+.|++|++.++++++.+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~   48 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS   48 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            66788999985 99999999999999999999998765433

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.53  E-value=0.062  Score=48.53  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPD  122 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~  122 (359)
                      ..+.+++|+|+|.+|.++++..+.+|. ++++.|.++++.+..++.|+.-+-++.
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~  245 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK  245 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence            356899999999999999999999995 799999999988887777776544444

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.53  E-value=0.07  Score=49.99  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  114 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g  114 (359)
                      .+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+.+.|
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G  210 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG  210 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence            467899999999999999999999999999998887766554444

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.52  E-value=0.054  Score=48.06  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +.++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~   48 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL   48 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            56788989985 899999999999999999999998655443

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.51  E-value=0.053  Score=54.32  Aligned_cols=67  Identities=21%  Similarity=0.224  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh-HHHhCCCc-cCCC---HHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGAK-YQPS---PDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-~~~~~g~~-~~~~---~~~~~~~aDivi~~~  135 (359)
                      +..++|||||.|..|+.++..+.+.|++|.++|.+++... .+.+.-+. ...+   +.++++++|+|....
T Consensus        20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~   91 (577)
T PLN02948         20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEI   91 (577)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEec
Confidence            6678999999999999999999999999999998765322 11111111 1234   345567899987654

>PRK09186 flagellin modification protein A; Provisional

Probab=95.51  E-value=0.062  Score=47.66  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+|+.|.+.|++|++.+|++++.+..
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~   44 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL   44 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence            45688999986 8999999999999999999999987655433

>PLN02214 cinnamoyl-CoA reductase

Probab=95.50  E-value=0.046  Score=51.13  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh-----HHHhC--CCc-------cCCCHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL--GAK-------YQPSPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~~~--g~~-------~~~~~~~~~~~aDivi~  133 (359)
                      +++++|.|.|. |.+|+.+++.|.+.|++|.+.+|+.+...     .+...  .+.       -..+++++++.+|+||.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            56688999997 99999999999999999999988765321     11110  111       11234566778898887


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +..
T Consensus        88 ~A~   90 (342)
T PLN02214         88 TAS   90 (342)
T ss_pred             ecC
Confidence            763

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.50  E-value=0.037  Score=51.30  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=34.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      .++++.|.|+ |.||.++|+.|++.|++|++.+|++++.+..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            3567888886 8899999999999999999999998765544

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.47  E-value=0.051  Score=48.45  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      |++.|.|. |.||.++++.|.+.|++|++.+|+++..+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   39 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEK   39 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            46888886 889999999999999999999998765443

>PRK09242 tropinone reductase; Provisional

Probab=95.46  E-value=0.082  Score=47.00  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|+.+..+.
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~   48 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQ   48 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            56688999986 899999999999999999999998655443

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.037  Score=48.67  Aligned_cols=42  Identities=21%  Similarity=0.170  Sum_probs=36.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~   49 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRL   49 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56688999997 8999999999999999999999987654443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.45  E-value=0.092  Score=46.78  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHh----CCCccCCCHHHHhh---cCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAA---SCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~---~aDivi~~~p~~~~  140 (359)
                      ..+++|.-||+|. |. ++..+++.|.. |+++|.++..++...+    .++.   +.-++..   ..|+|+... ....
T Consensus       118 ~~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani-~~~~  191 (250)
T PRK00517        118 LPGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANI-LANP  191 (250)
T ss_pred             CCCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcC-cHHH
Confidence            3568999999998 64 45556677765 9999999876654433    2331   0001111   479888766 3455


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ...++   +++...+++|..++-. .......+.+.+.+...|...+.
T Consensus       192 ~~~l~---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~  235 (250)
T PRK00517        192 LLELA---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE  235 (250)
T ss_pred             HHHHH---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence            66666   7777889998877743 22344556777788777776654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.45  E-value=0.063  Score=54.81  Aligned_cols=68  Identities=24%  Similarity=0.466  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc---------------------hhHHHhCCCccC--------C
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------P  119 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~  119 (359)
                      ..+++|.|||.|..|...|..|+..|++|+++++++..                     .+.+.+.|+...        .
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv  270 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI  270 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence            45689999999999999999999999999999976431                     122333454321        1


Q ss_pred             CHHHHhhcCCEEEEeeC
Q 018213          120 SPDEVAASCDVTFAMLA  136 (359)
Q Consensus       120 ~~~~~~~~aDivi~~~p  136 (359)
                      +.+++....|.|++++-
T Consensus       271 ~~~~~~~~~DaVilAtG  287 (652)
T PRK12814        271 TLEELQKEFDAVLLAVG  287 (652)
T ss_pred             CHHHHHhhcCEEEEEcC
Confidence            34455456899999884

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=95.44  E-value=0.19  Score=44.98  Aligned_cols=89  Identities=19%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHCCCcEEEE--cCCcc--chhHHHhCCCcc------CCCHHHHhhc-CC-EEEEeeCChh
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CD-VTFAMLADPE  139 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~g~~V~~~--d~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aD-ivi~~~p~~~  139 (359)
                      +|.|.|+ |+||+.+++.....++++...  ++...  ....+...++..      ..++++++.. +| ++|=.. .|.
T Consensus         2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~   80 (275)
T TIGR02130         2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS   80 (275)
T ss_pred             eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence            5889997 999999999988888988764  43221  111222223444      6688888876 89 555444 566


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .+...+   +   ...+.+..+|.-++|.
T Consensus        81 ~~~~n~---~---~~~~~gv~~ViGTTG~  103 (275)
T TIGR02130        81 AVNDNA---A---FYGKHGIPFVMGTTGG  103 (275)
T ss_pred             HHHHHH---H---HHHHCCCCEEEcCCCC
Confidence            666655   2   2234455444444443

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.44  E-value=0.068  Score=47.97  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCC
Q 018213           69 ELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ++++++.|.|.+   .||.++|+.|++.|++|++.+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            556889999986   69999999999999999988886

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.44  E-value=0.055  Score=49.11  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=27.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  103 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~  103 (359)
                      +|.|||+|.+|..+++.|+..|. +++++|.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            48999999999999999999996 67777754

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.068  Score=47.54  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ++++++.|+|. |.||..+++.|.+.|++|++.+|+++..
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~   44 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD   44 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence            66788999985 8999999999999999999999876543

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.069  Score=47.11  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~   44 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE   44 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH
Confidence            55678999986 99999999999999999999998765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
3doj_A	310	Structure Of Glyoxylate Reductase 1 From Arabidopsi		4e-90
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		1e-86
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		3e-85
2uyy_A	316	Structure Of The Cytokine-Like Nuclear Factor N-Pac		9e-72
1yb4_A	295	Crystal Structure Of The Tartronic Semialdehyde Red		2e-35
1vpd_A	299	X-Ray Crystal Structure Of Tartronate Semialdehyde		4e-33
3cky_A	301	Structural And Kinetic Properties Of A Beta-Hydroxy		2e-31
2gf2_A	296	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		4e-30
2i9p_A	319	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		5e-30
4dll_A	320	Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re		9e-28
4gbj_A	297	Crystal Structure Of Nad-Binding 6-Phosphogluconate		3e-20
1wp4_A	289	Structure Of Tt368 Protein From Thermus Thermophilu		1e-19
2cvz_A	289	Structure Of Hydroxyisobutyrate Dehydrogenase From		3e-17
3q3c_A	299	Crystal Structure Of A Serine Dehydrogenase From Ps		4e-15
3obb_A	300	Crystal Structure Of A Possible 3-Hydroxyisobutyrat		4e-15
3qha_A	296	Crystal Structure Of A Putative Oxidoreductase From		2e-14
3g0o_A	303	Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge		2e-11
2zyg_A	480	Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas		7e-06
3fwn_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		1e-05
2zya_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		1e-05

>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310

Iteration: 1
 Score =  328 bits (840), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 202/284 (71%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 262
Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 263 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/281 (55%), Positives = 201/281 (71%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           + GF+G+GIMG+ MA+NL+KAGC VT+WNR+  K + L +LGA+   +P EV  SC VTF
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AMLADP +A +V  GKHG   G+G G+GYVD+STVD  TS+ I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GSKKPAEDG LI LAAGD++LY+   P  + MGK   +LGDVG GA MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           A F EGL   EK GL  + +++V+  GA++ PM++LKG  + +  +  AFPLKH QKDLR
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242
Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 353
           LA+ L + V Q    +AAANEL+K A++ G  DEDFSA+ +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFK 283

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  311 bits (798), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 153/283 (54%), Positives = 196/283 (69%)
Query: 75  GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
           GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T AM
Sbjct: 5   GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 194
           LADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVSG+
Sbjct: 65  LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 254
           KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM  
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 255 FSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 314
             EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLRLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 315 LGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357
           + L + + Q    AA ANE +K A++ G +DEDF+AV   L+A
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA 287

>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316

Iteration: 1
 Score =  266 bits (681), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 187/282 (66%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 354
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313

>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 1/284 (0%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GI G+P A NL +AG  + V        D L+SLGA    +  +V    D+ F
Sbjct: 5   KLGFIGLGIXGSPXAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIF 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
             + D     DV  G+HG A     GK  VD S++    +K     +   GA +L+APVS
Sbjct: 64  IXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A +G L     G++ +++ V PL DI+GK+   +G  G+G   K+   +I+   +
Sbjct: 124 GGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNI 183
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
              SE L+ + K G DP  + + +  G  S+ +  + G   I   +   F +   QKDL 
Sbjct: 184 EAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDLN 243
Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LAL  A++++ + P  A   EL+    ++G S  D SA ++AL+
Sbjct: 244 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALE 287

>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 140/279 (50%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GI G P ++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 7   KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
             L +     +VA G++G   G  PG   +D S++    S+ I+  +KA G   L+APVS
Sbjct: 67  TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A DG L     GDK++++    L      S  + GD+G G   KL   +I+   +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           A  SE L  + K G++P+++ + +  G   + +   K P + +  +   F +    KDL 
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
            AL  +  V    P+ AA  E  +  ++ G  ++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285

>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 152/284 (53%), Gaps = 5/284 (1%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGF+G+G MG PMA NLLK G  V  ++  ++    +++ GA+   +  +VAA+ D+ F
Sbjct: 6   KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
             L +      V  G  G  S    G   VD+S+V   ++  +       G  +++APVS
Sbjct: 66  TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G  K AE G L  +    ++++  + P+L ++GK  +++GD G G A+K+V N+++G  M
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNM 185
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS---MIESLYPTAFPLKHQQK 309
           A+ +E L+   K GL P  + E++  G  S   Y+++      ++   +   F +  Q K
Sbjct: 186 ASLAEALVLGVKCGLKPETMQEII--GKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHK 243
Query: 310 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 353
           DL LAL   +  +   P+ A A ++++  ++ GL  ED SAVI+
Sbjct: 244 DLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIK 287

>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
           +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D    
Sbjct: 3   VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
           ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVSG
Sbjct: 63  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 122
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 253
               A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M 
Sbjct: 123 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 182
Query: 254 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 305
             +E +    ++GLDP +L ++++  +    S+  Y+   P +++ +     Y   F   
Sbjct: 183 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 241
Query: 306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 242 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295

>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
           +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D    
Sbjct: 25  VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
           ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVSG
Sbjct: 85  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 144
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 253
               A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M 
Sbjct: 145 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 204
Query: 254 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 305
             +E +    ++GLDP +L ++++  +    S+  Y+   P +++ +     Y   F   
Sbjct: 205 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 263
Query: 306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 264 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 317

>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320

Iteration: 1
 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 137/296 (46%), Gaps = 2/296 (0%)
Query: 64  SAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDE 123
           + E+D    +I FLG G  G P A+ L +AG  + VWNRT ++   L +LGA        
Sbjct: 24  TVESDPYARKITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARA 83
Query: 124 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183
            A   D+  + L +     DV   + G A+   PG  ++D +++    ++     + A G
Sbjct: 84  AARDADIVVSXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALG 142
Query: 184 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 243
            + L+ PVSG    AE G L+  A G  + +    PLL + G++  ++G  G+G   KL 
Sbjct: 143 IAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLA 201
Query: 244 VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFP 303
              I+G  +   +E LL + K G D   + E ++ G   + +  L G   +E  +     
Sbjct: 202 NQXIVGITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRAR 261
Query: 304 LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           L  Q KD R AL  A+ +    PI     +LY     HGL+D D S +   L ++ 
Sbjct: 262 LSIQLKDXRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317

>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 4/281 (1%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I FLG+G +GTP+A+ LL+AG ++ VWNRT SK +PL  LGA    +  +      + F
Sbjct: 7   KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           ++LAD  +  ++   +      +G    +V  ST+  +TS+ +    +  GA ++ AP+ 
Sbjct: 67  SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIF 124
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSM 251
              +           +G+      + P+++   K  F  GD  G    +KL  N  +   
Sbjct: 125 ARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACS 184
Query: 252 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQQKD 310
           +    E    +EK G+    + E ++    +AP++   G  +  + Y P AF      KD
Sbjct: 185 LEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD 244
Query: 311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           + L L  A  V+   P A      +    + G  + D+ A+
Sbjct: 245 INLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGAL 285

>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 22/291 (7%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 126
           ++ F+G+G MG PMA +L +      VWNRT  K         ++Q        P E  A
Sbjct: 3   KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186
              V F  L       +VA   +     +  G  +VD ++ + + S+ +   ++  G ++
Sbjct: 55  EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246
           L+APVSG    AE G L  +  G +     V P L    K   ++G VG G A+K + N 
Sbjct: 112 LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 247 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 305
           ++   +    EGLL   K G+     +EV++  +  S    +L    ++   +P  F L 
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
              KDL +A+G+ +     +P+   A E+Y++AK     D D    +EAL+
Sbjct: 231 LLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADH---VEALR 278

>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 22/291 (7%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 126
           ++ F+G+G  G P A +L +      VWNRT  K         ++Q        P E  A
Sbjct: 3   KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186
              V F  L       +VA   +     +  G  +VD ++ + + S+ +   ++  G ++
Sbjct: 55  EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246
           L+APVSG    AE G L     G +     V P L    K   ++G VG G A+K + N 
Sbjct: 112 LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 247 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 305
           ++   +    EGLL   K G+     +EV++  +  S    +L    ++   +P  F L 
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
              KDL +A G+ +     +P+   A E+Y+ AK     D D    +EAL+
Sbjct: 231 LLVKDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADH---VEALR 278

>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I F+G+G  G P A NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 4   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           + L   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 64  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    A  G L F   GD        PL +  G++ F+ G  G G   K+  N ++  + 
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 304
              +E        GL+  VL E+    S G  +  +Y+   P + E+      Y   F  
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 242
Query: 305 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           +   KDL LA   A++ + STP  + A  LY++    G ++ DFS V
Sbjct: 243 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289

>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I F+G+G  G P A NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 5   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           + L   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 65  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    A  G L F   GD        PL +  G++ F+ G  G G   K+  N ++  + 
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 304
              +E        GL+  VL E+    S G  +  +Y+   P + E+      Y   F  
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 243
Query: 305 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 351
           +   KDL LA   A++ + STP  + A  LY++    G ++ DFS V
Sbjct: 244 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290

>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 12/269 (4%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++G++G+G MG PMA  + +    VTV++       PL   GA    S  +VAA+  +  
Sbjct: 17  KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            +L D +   +V     G A    PG      ST+   T+  +   +KA     ++APVS
Sbjct: 77  TVLDDAQ-VREVVGELAGHAK---PGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    A  G+L  +   D+ +Y  + P          + G+ G G  MKL  NM+  +  
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSY 192
Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQ-GAISAPMYSLKGPSMIESLYPTAF---PLKHQ- 307
           A   E +  +E  GLD   L  VV    A++    ++     ++ L P  F   P  H  
Sbjct: 193 AAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252
Query: 308 ---QKDLRLALGLAESVSQSTPIAAAANE 333
              +KDL LAL L E+VS   P+A  A E
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPLARLAYE 281

>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 2/269 (0%)
Query: 87  AQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 145
           A++ L+AG      +     C  L++ GA     S  E A   D    ++ +      V 
Sbjct: 23  ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205
            G+ G A    PG      ST+    ++ I   + A   + L+APVSG    A  G+   
Sbjct: 83  FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTV 142
Query: 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSMMATFSEGLLHSEK 264
            A+G ++ +  + P+LD +  + + + D  G G+ +K++  ++ G  +A  +E    + +
Sbjct: 143 XASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAAR 202
Query: 265 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 324
            G+  +V  +VV+  A ++  +  +   +++  Y     +    KDL L    A+++   
Sbjct: 203 AGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP 262
Query: 325 TPIAAAANELYKVAKSHGLSDEDFSAVIE 353
            P+A+ A   +  A + G   ED SAVI+
Sbjct: 263 LPLASTALNXFTSASNAGYGKEDDSAVIK 291

>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
           +IG +GM +MG  +A N+   G  V+V+NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVES- 75
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
                 L  P   + +     G  S +   K Y+D     +DG      DT +  N  + 
Sbjct: 76  ------LETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
           A G +F+   VSG ++    G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGTLKGPSI-MPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMIMGSMMATFSE 257
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
           +    +L      +    G   A   + P   Y+D     +DG      DT +  N  + 
Sbjct: 77  ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
           A G +F+   VSG ++ A  G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMIMGSMMATFSE 257
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
           +    +L      +    G   A   + P   Y+D     +DG      DT +  N  + 
Sbjct: 77  ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
           A G +F+   VSG ++ A  G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMIMGSMMATFSE 257
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	1e-125
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	1e-125
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	1e-125
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	1e-125
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	1e-104
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	1e-91
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	9e-88
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	1e-87
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	1e-85
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	1e-84
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	2e-84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	5e-84
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	5e-76
3qha_A	296	Putative oxidoreductase; seattle structural genomi	2e-72
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	4e-61
4ezb_A	317	Uncharacterized conserved protein; structural geno	5e-45
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	4e-41
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	1e-20
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	5e-17
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	1e-15
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	1e-13
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	7e-09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	9e-09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	5e-08
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	8e-08
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	2e-07
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	3e-07
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	1e-06
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	2e-06
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	6e-06
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	1e-05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	8e-05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-04
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-04
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	1e-04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	2e-04
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	2e-04
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	2e-04
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-04
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-04
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	3e-04
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-04

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score =  361 bits (930), Expect = e-125
 Identities = 166/287 (57%), Positives = 203/287 (70%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 262

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K  +
Sbjct: 263 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score =  360 bits (927), Expect = e-125
 Identities = 156/284 (54%), Positives = 202/284 (71%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           + GF+G+GIMG+ MA+NL+KAGC VT+WNR+  K + L +LGA+   +P EV  SC VTF
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AMLADP +A +V  GKHG   G+G G+GYVD+STVD  TS+ I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GSKKPAEDG LI LAAGD++LY+   P  + MGK   +LGDVG GA MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           A F EGL   EK GL  + +++V+  GA++ PM++LKG  + +  +  AFPLKH QKDLR
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
           LA+ L + V Q    +AAANEL+K A++ G  DEDFSA+ +  +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score =  359 bits (925), Expect = e-125
 Identities = 153/285 (53%), Positives = 196/285 (68%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
             GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T 
Sbjct: 3   TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITI 62

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           AMLADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS 122

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G+KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM
Sbjct: 123 GTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMM 182

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
               EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLR
Sbjct: 183 TALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLR 242

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357
           LA+ L + + Q    AA ANE +K A++ G +DEDF+AV   L+A
Sbjct: 243 LAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA 287

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score =  360 bits (927), Expect = e-125
 Identities = 132/283 (46%), Positives = 187/283 (66%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 355
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A 
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score =  308 bits (792), Expect = e-104
 Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 6/300 (2%)

Query: 63  VSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD 122
           +S   +     +  +G+G MGT MAQ LLK G  V +WNR+  K   L++ GA    S  
Sbjct: 1   MSLSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVK 60

Query: 123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 182
              ++   T  +L D  +  +V  G  G A  +   +  VD +T   D    + G +   
Sbjct: 61  AALSASPATIFVLLDNHATHEV-LGMPGVARAL-AHRTIVDYTTNAQDEGLALQGLVNQA 118

Query: 183 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKL 242
           G  +++  +    +     +   +  GD+  +     LL+ +     +L       A   
Sbjct: 119 GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFAT 177

Query: 243 VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ--GAISAPMYSLKGPSMIESLYPT 300
           V++    + M TF E +   ++ GL  +    ++ +      A         +    +  
Sbjct: 178 VLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKG 237

Query: 301 A-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
               L               +    TP+  A  ++ + A + G  D+D +A  ++   ++
Sbjct: 238 DQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score =  275 bits (706), Expect = 1e-91
 Identities = 88/284 (30%), Positives = 150/284 (52%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMG PM++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 7   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            ML +     +VA G++G   G  PG   +D+S++    S+ I+  +KA G   L+APVS
Sbjct: 67  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 126

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A DG L  +  GDK++++    L+  M  S  + GD+G G   KL   +I+   +
Sbjct: 127 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNI 186

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
           A  SE L  + K G++P+++ + +  G   + +   K P +++  +   F +    KDL 
Sbjct: 187 AAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 246

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
            AL  +  V    P+ AA  E+ +  ++ G  ++D SA+    +
Sbjct: 247 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYE 290

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score =  265 bits (680), Expect = 9e-88
 Identities = 88/285 (30%), Positives = 151/285 (52%), Gaps = 1/285 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IGF+G+G MG PMA NLLK G  V  ++  ++    +++ GA+   +  +VAA+ D+ F
Sbjct: 6   KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
             L +      V  G  G  S    G   VD+S+V   ++  +       G  +++APVS
Sbjct: 66  TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G  K AE G L  +    ++++  + P+L ++GK  +++GD G G A+K+V N+++G  M
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNM 185

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIES-LYPTAFPLKHQQKDL 311
           A+ +E L+   K GL P  + E++ + +  +     K    I S  +   F +  Q KDL
Sbjct: 186 ASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDL 245

Query: 312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
            LAL   +  +   P+ A A ++++  ++ GL  ED SAVI+  +
Sbjct: 246 GLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWE 290

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score =  265 bits (679), Expect = 1e-87
 Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 1/285 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMG+PMA NL +AG  + V        D L+SLGA    +  +V    D+ F
Sbjct: 5   KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVA-DELLSLGAVNVETARQVTEFADIIF 63

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            M+ D     DV  G+HG A     GK  VD+S++    +K     +   GA +L+APVS
Sbjct: 64  IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVS 123

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G +  A +G L  +  G++ +++ V PL DI+GK+   +G  G+G   K+   +I+   +
Sbjct: 124 GGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNI 183

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
              SE L+ + K G DP  + + +  G  S+ +  + G  MI   +   F +   QKDL 
Sbjct: 184 EAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLN 243

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357
           LAL  A++++ + P  A   EL+    ++G S  D SA+++AL+ 
Sbjct: 244 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score =  260 bits (668), Expect = 1e-85
 Identities = 90/286 (31%), Positives = 142/286 (49%), Gaps = 2/286 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I FLG G MG PMA+ L +AG  + VWNRT ++   L +LGA         A   D+  
Sbjct: 33  KITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           +ML +     DV   + G A+ M PG  ++D++++    ++     + A G + L+ PVS
Sbjct: 93  SMLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVS 151

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    AE G L+ +A G  + +    PLL + G++  ++G  G+G   KL   MI+G  +
Sbjct: 152 GGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRA-THVGPHGSGQLTKLANQMIVGITI 210

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312
              +E LL + K G D   + E ++ G   + +  L G  M+E  +     L  Q KD+R
Sbjct: 211 GAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMR 270

Query: 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
            AL  A+ +    PI     +LY     HGL+D D S +   L ++
Sbjct: 271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score =  257 bits (660), Expect = 1e-84
 Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 2/288 (0%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVT 131
            +G +G+G MG   A++ L+AG      +     C  L++ GA     S  E A   D  
Sbjct: 9   HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDAL 68

Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191
             ++ +      V  G+ G A  M PG   +  ST+    ++ I   + A   + L+APV
Sbjct: 69  VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPV 128

Query: 192 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGS 250
           SG    A  G++  +A+G ++ +  + P+LD +  + + + D  G G+ +K++  ++ G 
Sbjct: 129 SGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGV 188

Query: 251 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD 310
            +A  +E +  + + G+  +V+ +VV+  A ++ M+  +   +++  Y     +    KD
Sbjct: 189 HIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKD 248

Query: 311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358
           L L    A+++    P+A+ A  ++  A + G   ED SAVI+    +
Sbjct: 249 LGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score =  257 bits (658), Expect = 2e-84
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D   
Sbjct: 2   PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVS
Sbjct: 62  TMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVS 121

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M
Sbjct: 122 GGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISM 181

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLKGPSMIESLYPTAFPLK 305
              +E +    ++GLDP +L ++++  +          P+  +       + Y   F   
Sbjct: 182 IGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTT 241

Query: 306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 359
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 242 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score =  235 bits (601), Expect = 5e-76
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 7/285 (2%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++ F+G+G MG PMA +L +      VWNRT  K           +  P E  A   V F
Sbjct: 3   KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIF 60

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
             L       +V          +  G  +VD ++ + + S+ +   ++  G ++L+APVS
Sbjct: 61  TCLPTTR---EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 117

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    AE G L  +  G +     V P L    K   ++G VG G A+K + N ++   +
Sbjct: 118 GGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNL 176

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 311
               EGLL   K G+     +EV++     S    +L    ++   +P  F L    KDL
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL 236

Query: 312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356
            +A+G+ +     +P+   A E+Y++AK     D D    +  L+
Sbjct: 237 GIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLE 281

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score =  226 bits (577), Expect = 2e-72
 Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 12/283 (4%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++G++G+G MG PMA  + +    VTV++       PL   GA    S  +VAA+  +  
Sbjct: 17  KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            +L D      V       A    PG      ST+   T+  +   +KA     ++APVS
Sbjct: 77  TVLDDA----QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           G    A  G+L  +   D+ +Y  + P          + G+ G G  MKL  NM+  +  
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSY 192

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQ-----GAISAPMYSLKGPSMIESLY---PTAFPL 304
           A   E +  +E  GLD   L  VV       G   A M       +    +   P     
Sbjct: 193 AAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252

Query: 305 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED 347
              +KDL LAL L E+VS   P+A  A E           +++
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score =  197 bits (503), Expect = 4e-61
 Identities = 58/286 (20%), Positives = 100/286 (34%), Gaps = 12/286 (4%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKC--DPLISLGAKYQPSPDEVAASCD 129
           ++GF+G G   + +A  L +AG  D+  ++   ++        LG   + S  EVA  CD
Sbjct: 26  KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85

Query: 130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189
           V F+++     A++VA     A   +  G  Y D ++      + I   I     S   A
Sbjct: 86  VIFSLVTAQA-ALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYA 141

Query: 190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
            V+        G  + L           A       +     G+VG  A +K+  + ++ 
Sbjct: 142 AVAVMSAVKPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLK 201

Query: 250 SMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQK 309
            + A F E L  +EK+GL   VL  + +               ++E     A    H   
Sbjct: 202 GLEALFLEALAAAEKMGLADRVLASLDASFP--EHHLRDLALYLVERNLEHADRRAH--- 256

Query: 310 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 355
           +L        SV     +A A             + +     + A 
Sbjct: 257 ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAW 302

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317

 Score =  155 bits (394), Expect = 5e-45
 Identities = 55/299 (18%), Positives = 105/299 (35%), Gaps = 25/299 (8%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP------SPDEVA 125
            I F+G G     +A  L       +  ++   +      +L A+               
Sbjct: 26  TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGI 85

Query: 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185
           A  DV  +++    +   VA     AA  +     ++D+++V  DT  L  G I     S
Sbjct: 86  ACADVVLSLVV-GAATKAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141

Query: 186 FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVV 244
           F+E  V     P  +   I +A         VA  L+ +G +        G  +++K++ 
Sbjct: 142 FVEGAVMARVPPYAEKVPILVAGRRAV---EVAERLNALGMNLEAVGETPGQASSLKMIR 198

Query: 245 NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPL 304
           ++++  + A   E L  +E+ G+   +L  V          +       +   +      
Sbjct: 199 SVMIKGVEALLIEALSSAERAGVTERILDSVQET--FPGLDWRDVADYYLSRTFEHGAR- 255

Query: 305 KHQQKDLRLALGLAESVSQSTPIAAAANELYK----VAKSHGLSDED-FSAVIEALKAK 358
             +  ++  A    ES   + P++ AA E         K  GLS  D +   +  L  +
Sbjct: 256 --RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264

 Score =  144 bits (364), Expect = 4e-41
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           R+GF+G G +   +A  L   G +V      +S      +       + +E   SC V  
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           + +  P  A+  A       +G      YVD++ +  +T ++ +  I+  G  F++A + 
Sbjct: 62  SAVT-PGVALGAA-----RRAGRHVRGIYVDINNISPETVRMASSLIEKGG--FVDAAIM 113

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
           GS +       I  +  D         L            + G+ +A+K++ +     + 
Sbjct: 114 GSVRRKGADIRIIASGRDAE---EFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKGVS 170

Query: 253 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF 302
           A   E L  + ++GL+ +VL  +          +     S ++S    A 
Sbjct: 171 ALLWETLTAAHRLGLEEDVLEML---EYTEGNDFRESAISRLKSSCIHAR 217

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 89.1 bits (220), Expect = 1e-20
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDV 130
            I  +G G + T +A+ L + G  +  V++RT+     L   + A+Y     EV     +
Sbjct: 12  PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71

Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
               L D   A ++     G   G       V  +        +  GH+   G  +    
Sbjct: 72  YIVSLKDSAFA-ELL---QGIVEGKREEALMVHTAGSIP--MNVWEGHVPHYGVFYPMQT 125

Query: 191 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS 250
            S  ++        F+ A        +  +   +    +   D     ++ L        
Sbjct: 126 FSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYD-ADSEQRKSLHLAAVFTCNF 184

Query: 251 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA----PMYSLKGP 291
               ++      +K  L  +V++ ++ + A       P  +  GP
Sbjct: 185 TNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTGP 229

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 78.1 bits (192), Expect = 5e-17
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 6/187 (3%)

Query: 59  QATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ 118
            +    A+  +   ++G LG G     +A  L+ +G  V V +R   +   L    A+  
Sbjct: 16  DSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQ-V 74

Query: 119 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 178
              +E  +S +V F  +     +   +     A   +       +   +    S      
Sbjct: 75  TFQEEAVSSPEVIFVAVFREHYSSLCSLSDQLAGKILVDVSNPTEQEHLQHRESNAEYLA 134

Query: 179 IKATGA----SFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
                     +F        +    DG   + +          V+ +   MG     +G 
Sbjct: 135 SLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGS 194

Query: 234 VGNGAAM 240
           + +   +
Sbjct: 195 LASAWEV 201

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 75.2 bits (184), Expect = 1e-15
 Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 11/198 (5%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            + F+G G +     + L        + +R+  +   L  +      + ++      V F
Sbjct: 4   VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            ++ D                      G   +    G  S  I             +  S
Sbjct: 64  VIVPDRYIKTVAN----------HLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSS 113

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 252
             K      Q++F   GD+     V  + + +    F +       A  L   +     +
Sbjct: 114 LEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS-EKKKAYHLAAVIASNFPV 172

Query: 253 ATFSEGLLHSEKVGLDPN 270
           A           +GLD  
Sbjct: 173 ALAYLSKRIYTLLGLDEP 190

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 67.8 bits (165), Expect = 1e-13
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 9/189 (4%)

Query: 57  SSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
            +    ++ ++ E  G +   G G  G  +   +L+ G  V   +R       L+  GA+
Sbjct: 5   CADEFPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSS-LLPRGAE 63

Query: 117 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN 176
                 E A+  DV   +LA      D       +  G        +        S    
Sbjct: 64  V-LCYSEAASRSDV--IVLAVHREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEY 120

Query: 177 GHIKATGASFLEAPVSGSKKPAEDGQL-----IFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
                 GA  ++A  + S    + G L     +F+   D    + V  +   +G +    
Sbjct: 121 LAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQ 180

Query: 232 GDVGNGAAM 240
           G +     +
Sbjct: 181 GSLVAAKEI 189

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 132
           +G +G+G+MG  +A N+ + G  V V+NRT SK +  +   A    + +  A      F 
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63

Query: 133 AMLADPESAMDVACGKHGAA-----SGMGPGKGYVDVSTVDGDTSKLING-----HIKAT 182
           A L  P  A+ +   + GAA       +       D+  VD   +   +       ++A 
Sbjct: 64  ASLKKPRKALILV--QAGAATDSTIEQLKKVFEKGDI-LVDTGNAHFKDQGRRAQQLEAA 120

Query: 183 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR------FYLGDVG 235
           G  FL   +SG ++ A  G   F   G  S++  + P++     K+          G  G
Sbjct: 121 GLRFLGMGISGGEEGARKGPAFF-PGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGG 179

Query: 236 NGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEVVSQ 278
            G+ +K+  N    +++  + E   +L +  +GL+ + +  V+  
Sbjct: 180 AGSCVKMYHNSGEYAILQIWGEVFDILRA--MGLNNDEVAAVLED 222

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 27/197 (13%), Positives = 48/197 (24%), Gaps = 20/197 (10%)

Query: 73  RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
            +  LG  G MG  + + +  +   +          D L  +G       D      DV 
Sbjct: 13  TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVV 71

Query: 132 FAMLADPESAM-DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI------------NGH 178
              L  P++ +  VA         + PG   + +         +                
Sbjct: 72  VLAL--PDNIIEKVA---EDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHP 126

Query: 179 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGA 238
                 +   A        A+   +  L  G +  Y   A + + M         V    
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186

Query: 239 AMKLVVNMIMGSMMATF 255
              L   +     M   
Sbjct: 187 LAILEPGLSEMVAMPFV 203

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 11/171 (6%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--PLISLGAKYQPSPDEVAASCDV 130
            I   G G MG  +  N   AG +VT +           ++ +   Y             
Sbjct: 21  EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQ---- 76

Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190
                A       V    +               S+   +  + +         +   A 
Sbjct: 77  ----YATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAA 132

Query: 191 VSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 240
              S +        + +A  D S        L          G +     +
Sbjct: 133 TLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 51.6 bits (123), Expect = 8e-08
 Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 32/200 (16%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL--------------ISLGAKYQ 118
           +I  LG G +G  MA  L   G +VT+  R                      +       
Sbjct: 21  KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80

Query: 119 PSPDEVAASCDVTFAMLADPESAMDVA----------------CGKHGAASGMGPGKGYV 162
            +     A+         +  S++                         + GM P    V
Sbjct: 81  LAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPV 140

Query: 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLL 221
           +  ++     +           + + A +      A  G   +F++  D +    VA LL
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLL 200

Query: 222 DIMGKSR-FYLGDVGNGAAM 240
             +G      LGD+      
Sbjct: 201 KSLGHQDVIDLGDITTARGA 220

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 57  SSQATGVSAEADELPG---RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL 113
              ++GV    + L     +IG +G+G MG  M + L K G +  V++   +    L   
Sbjct: 5   HHHSSGVDLGTENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE 64

Query: 114 GAKYQPSPDEVAAS 127
           G     S +E  A 
Sbjct: 65  GIAGARSIEEFCAK 78

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVT 131
           +IG +G+G M + + + L +   ++ +   +  +   +   L   Y  S  ++    D+ 
Sbjct: 5   KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 64

Query: 132 F 132
            
Sbjct: 65  I 65

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 45/231 (19%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQP--SPDEVAASC 128
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES- 75

Query: 129 DVTFAMLADPESAMDVACGKHGAA---------SGMGPGKGYVDVSTVDG------DTSK 173
                 L  P   + +   K GA            +  G    D+  +DG      DT +
Sbjct: 76  ------LETPRRILLMV--KAGAGTDAAIDSLKPYLDKG----DI-IIDGGNTFFQDTIR 122

Query: 174 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR---- 228
                + A G +F+   VSG ++ A  G  I    G K  Y  VAP+L  I   +     
Sbjct: 123 RNR-ELSAEGFNFIGTGVSGGEEGALKGPSIM-PGGQKEAYELVAPILTKIAAVAEDGEP 180

Query: 229 --FYLGDVGNGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEV 275
              Y+G  G G  +K+V N I    M   +E   LL    + L    L + 
Sbjct: 181 CVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKG-GLNLTNEELAQT 230

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 46/232 (19%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQP--SPDEVAASC 128
             G +GM +MG  +A N+   G  V ++NRT SK + +             + +E   S 
Sbjct: 7   NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGS- 65

Query: 129 DVTFAMLADPESAMDVACGKHGAA---------SGMGPGKGYVDVSTVDG------DTSK 173
                 L  P   M +   + GAA           +  G    D+  +DG      DT +
Sbjct: 66  ------LEKPRRIMLMV--QAGAATDATIKSLLPLLDIG----DI-LIDGGNTHFPDTMR 112

Query: 174 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSRF--- 229
                +  +G +F+   VSG +K A  G  +    G K  Y+ VAP+   I  K+     
Sbjct: 113 RNA-ELADSGINFIGTGVSGGEKGALLGPSMM-PGGQKEAYDLVAPIFEQIAAKAPQDGK 170

Query: 230 ----YLGDVGNGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEV 275
               Y+G  G G  +K+V N I    M   +E   LL    +GL    +  +
Sbjct: 171 PCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKR-ILGLSNAEIQAI 221

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 19/187 (10%)

Query: 73  RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP------DEVA 125
           R+  LG  G +G  +A  L   G ++ V +R + K +   +   +           +E A
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61

Query: 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185
           A       +    E A+D A                V VS      +           A 
Sbjct: 62  AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121

Query: 186 FL-EAPVSGSKKPAEDGQL----------IFLAAGDKSLYNTVAPLL-DIMGKSRFYLGD 233
            L    V  +       +           + +   D      V  L+ +I G      G 
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181

Query: 234 VGNGAAM 240
           + N   +
Sbjct: 182 LSNSRLV 188

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 127
           +IGF+G G MG  M   ++         +   +   +         G       +EVA +
Sbjct: 4   QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKN 63

Query: 128 CDVTF 132
            D+  
Sbjct: 64  ADILI 68

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 15/123 (12%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT- 131
            +  LG G +  P    L  +G  VTV  RT      L +              S DV  
Sbjct: 5   SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA------GVQHSTPISLDVND 58

Query: 132 ----FAMLADPE---SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 184
                A +A  +   S +          S +   K  V  S         ++   K  G 
Sbjct: 59  DAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTS-YVSPAMMELDQAAKDAGI 117

Query: 185 SFL 187
           + +
Sbjct: 118 TVM 120

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDV 130
            +  LG+G +G  +A+     G  V V  R       +  +G +        +     DV
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 73  RIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
            +G +G+G +   +A+  +   G  +  ++   +  +   +LGA+   S +E+A   D 
Sbjct: 165 VLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDC 223

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAA 126
            +GF+G G +   +A+    AG      +   +             +G K  P   E   
Sbjct: 24  SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83

Query: 127 SCDVTF 132
             DV F
Sbjct: 84  HSDVLF 89

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASC 128
            I F+G G M   +   L+  G     + V NR+  K D      G        + A + 
Sbjct: 5   NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64

Query: 129 DVTF 132
           DV  
Sbjct: 65  DVVV 68

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 128
           ++GF+G+G MG+ +A  +  A      ++  +  +K            Y  S +E+A  C
Sbjct: 6   KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHC 59

Query: 129 DVTF 132
           D+  
Sbjct: 60  DIIV 63

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112
            I  +G+ +MG  +  N+   G  V  +NRT SK D  ++
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA 43

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
            +G  G G +G  +A+       D+  ++  ++      S  A +  S D + +    
Sbjct: 148 TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQF 205

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
           RIG LG+G +G  +A      G  V  WNR+      L  +      SP ++A   DV
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGMSVRYWNRS-----TLSGVDWIAHQSPVDLARDSDV 225

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
            G +G+ +MG  +  N    G  V  +NRT+SK D  ++  AK
Sbjct: 13  FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK 55

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
           R+G +G+G +G  +A+      C ++ ++R+        +    Y  S  E+A++ D+
Sbjct: 166 RVGIIGLGRIGLAVAERAEAFDCPISYFSRS-----KKPNTNYTYYGSVVELASNSDI 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	100.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	100.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	100.0
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	100.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	100.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	100.0
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	100.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	100.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	100.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	100.0
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	100.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	100.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	100.0
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	100.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	100.0
4ezb_A	317	Uncharacterized conserved protein; structural geno	100.0
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	100.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.98
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.97
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.97
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.97
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.96
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.95
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.95
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.94
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.94
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.94
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.94
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.94
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.93
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.93
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.93
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.93
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.93
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.93
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.93
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.93
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.92
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.92
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.92
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.92
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.92
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.92
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.92
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.92
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.91
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.91
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.91
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.91
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.91
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.91
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.91
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.9
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.9
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.9
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.9
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.9
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.9
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.9
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.9
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.9
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.9
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.89
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.89
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.89
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.89
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.89
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.88
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.88
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.88
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.88
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.88
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.87
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.87
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.87
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.86
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.86
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.86
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.85
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.85
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.84
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.84
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.84
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.83
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.82
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.82
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.82
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.82
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.82
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.8
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.8
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.8
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.8
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.8
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.79
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.78
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.78
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.76
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.75
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.73
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.73
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.72
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.71
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.54
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.69
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.69
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.66
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.66
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.66
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.66
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.63
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.62
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.47
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.45
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.44
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.43
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.4
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.35
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.34
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.32
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.3
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.22
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.21
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.12
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.12
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.12
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.08
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.07
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.01
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.98
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.97
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.95
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.88
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.85
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.82
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.82
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.8
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.79
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.78
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.77
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.76
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.76
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.75
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.74
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.74
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.73
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.73
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.72
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.72
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.72
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.72
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.71
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.68
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.67
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.67
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.67
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.66
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.66
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.66
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.65
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.63
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.63
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.62
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.62
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.62
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.61
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.6
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.59
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.59
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.58
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.57
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.56
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.56
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.55
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.54
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.54
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.52
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.51
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.51
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.51
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.5
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.48
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.47
4had_A	350	Probable oxidoreductase protein; structural genomi	98.46
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.45
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.45
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.44
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.43
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.43
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.43
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.43
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.43
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.43
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.41
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.4
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.4
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.4
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.39
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.39
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.39
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	98.38
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.37
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.36
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.35
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.34
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.34
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.33
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.33
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.33
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.33
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.32
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.32
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.32
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.31
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.3
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.28
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.28
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.28
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.28
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.28
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.27
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.25
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.21
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.21
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.2
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.2
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.19
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.19
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.19
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.18
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.18
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.18
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.18
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.18
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.15
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.15
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.15
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.14
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.14
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.14
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	98.14
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.14
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.13
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.11
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.11
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.11
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.1
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.1
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.09
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.09
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.09
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.07
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.06
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	98.05
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.04
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.03
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.03
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.03
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.03
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.0
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.99
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.98
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.97
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.96
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.95
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.95
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.93
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.92
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.92
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.9
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.88
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.87
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.85
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.84
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.82
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.82
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.77
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.77
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.77
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.77
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.75
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.74
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.72
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.72
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.7
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.69
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.69
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.68
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.6
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.6
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.57
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.57
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.56
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.56
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.54
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.48
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.47
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.45
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.45
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.44
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.44
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.42
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.4
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.39
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.37
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.3
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.3
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.29
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.28
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.28
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.26
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.25
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.19
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.18
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.18
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.18
2csu_A	457	457AA long hypothetical protein; structural genomi	97.17
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.16
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.16
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.11
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.04
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.03
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.01
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.0
1lnq_A	336	MTHK channels, potassium channel related protein;	97.0
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.99
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.96
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.96
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.96
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.96
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	96.96
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.96
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.95
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.95
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.94
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.93
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.93
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.91
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.87
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.86
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.84
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.84
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.83
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.82
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.82
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.81
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.79
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.79
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.75
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.74
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.72
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.71
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.71
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.71
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.7
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.7
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.69
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.67
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.66
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.64
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.63
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.62
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.61
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.61
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.6
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.58
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.58
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.58
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.57
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.57
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.57
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.56
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.56
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.56
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.55
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.55
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.54
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.54
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.53
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.53
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.51
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.51
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.51
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.5
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.5
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.5
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.5
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.5
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.48
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.47
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.47
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.47
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.47
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.46
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.46
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.45
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.45
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.44
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.44
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.44
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	96.44
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.44
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.43
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.43
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.42
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.41
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.41
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.4
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.4
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.4
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.4
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.4
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.39
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.39
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.37
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.37
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.37
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.37
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.37
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.34
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.34
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.33
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.33
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.32
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.31
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.31
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.3
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.3
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.29
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.29
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.28
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.28
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.28
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.27
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.27
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.25
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.25
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.24
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.24
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.24
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.23
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.23
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.23
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.22
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.22
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.22
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.21
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.2
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.2
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.2
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.2
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.2
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.19
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.19
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.19
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.18
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.18
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.18
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.17
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.17
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.17
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.17
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.16
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.16
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.16
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.16
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.15
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.15
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.14
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.13
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.13
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.12
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.12
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.12
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.12
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.11

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=1.8e-49  Score=361.00  Aligned_cols=288  Identities=28%  Similarity=0.464  Sum_probs=274.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      ++||||||+|+||..+|++|.+.||+|++|||++++.+.+.+.|+..+.++.|+++.+|+|++|+|.+++++.++++...
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999976667


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +++.+++|+++||+|+..|.+.+++.+.++++|+.|+++|++|++..+..+++.++++|+++.+++++++|+.+|.++++
T Consensus        83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~  162 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH  162 (300)
T ss_dssp             STTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-------ccccCCCCCCcc
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFP  303 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~  303 (359)
                      +|+.|.++..|+++|.+...++.+++|++.++++.|++++.+.+++..+++.++.++.+.|       .+..++|.++|+
T Consensus       163 ~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~  242 (300)
T 3obb_A          163 AGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFM  242 (300)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSB
T ss_pred             eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccch
Confidence            9999999999999999999999999999999999999999999999999999999887765       355678899999


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          304 LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       304 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      ++.+.||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|++|+++++++|++.
T Consensus       243 ~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~  297 (300)
T 3obb_A          243 AQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT  297 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999753

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=7e-48  Score=350.77  Aligned_cols=285  Identities=25%  Similarity=0.416  Sum_probs=265.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      +||||||+|+||..+|++|.+.||+|++|||++++.+.+.+.|+..+.++.|+++++|+||+|+|.+..++.++  ...+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~--~~~~   83 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELF--SMEL   83 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHS--CHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHH--HHHH
Confidence            57999999999999999999999999999999999998888899999999999999999999999988888887  3557


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++.++||+|+..|.+.+++.+.+.++|+.|+++|++|++.....+.+.++++|+++.+++++++|+.++.+++++
T Consensus        84 ~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~  163 (297)
T 4gbj_A           84 VEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDF  163 (297)
T ss_dssp             HHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred             HhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEe
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHH
Q 018213          232 GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQK  309 (359)
Q Consensus       232 g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~k  309 (359)
                      ++ +|.++..|+++|.+....+++++|++.++++.|++++.+.+++..+.+.||+++.+.+.+..++|.| +|+++.+.|
T Consensus       164 g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~K  243 (297)
T 4gbj_A          164 GDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLK  243 (297)
T ss_dssp             CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHH
Confidence            85 8999999999999999999999999999999999999999999999999999999999999999986 799999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          310 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       310 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      |++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|++++++.+++.
T Consensus       244 Dl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~  292 (297)
T 4gbj_A          244 DINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDD  292 (297)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=6.3e-46  Score=341.00  Aligned_cols=290  Identities=57%  Similarity=0.895  Sum_probs=276.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      .++|+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.+++++++++|+|++|+|.+.+++.++++.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            56689999999999999999999999999999999999998888899989999999999999999999888999988766


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  228 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~  228 (359)
                      +++.+.++++++|||+|+..+...+.+.+.+.+.|+.|+++|+++++.....++..++++++++.+++++++|+.+|.++
T Consensus        99 ~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~  178 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRS  178 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCE
Confidence            77888899999999999999999999999999999999999999998888888888899999999999999999999999


Q ss_pred             EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHH
Q 018213          229 FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ  308 (359)
Q Consensus       229 ~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      +++++.+.+.+.|++.|.+.+..+++++|++.++++.|++++++.+++..+.+.+++++.+.+.+..++|.++|++..+.
T Consensus       179 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~  258 (310)
T 3doj_A          179 FYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQ  258 (310)
T ss_dssp             EECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHH
T ss_pred             EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       309 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      ||++.+.+++++.|+++|+++++.++++.+.+.|+|++|++++++++++.
T Consensus       259 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  308 (310)
T 3doj_A          259 KDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS  308 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=100.00  E-value=2.8e-44  Score=331.37  Aligned_cols=288  Identities=31%  Similarity=0.509  Sum_probs=271.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ...|+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.+++++++++|+|++|+|.+..++.++++.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~  108 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ  108 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence            45689999999999999999999999999999999998888888899888999999999999999999888999998221


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  228 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~  228 (359)
                       ++.+.++++.+|||+|++.+.+.+.+.+.+.+.++.|+++|+++++.....+...++++++++.+++++++++.+ .++
T Consensus       109 -~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~  186 (320)
T 4dll_A          109 -GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRA  186 (320)
T ss_dssp             -CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEE
T ss_pred             -hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCE
Confidence             778889999999999999999999999999999999999999998887778888899999999999999999999 889


Q ss_pred             EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHH
Q 018213          229 FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ  308 (359)
Q Consensus       229 ~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      +++++.+.+.+.|+++|.+....+++++|++.++++.|++++++.+++..+.+.+|+++.+.+.+..++|.++|+++.+.
T Consensus       187 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~  266 (320)
T 4dll_A          187 THVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQL  266 (320)
T ss_dssp             EEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHH
T ss_pred             EEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHH
Confidence            99999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       309 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      ||++.+.+++++.|+++|+++++.++|+.+.+.|+|++|++++++++++.
T Consensus       267 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  316 (320)
T 4dll_A          267 KDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR  316 (320)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=100.00  E-value=2.9e-44  Score=326.67  Aligned_cols=286  Identities=53%  Similarity=0.895  Sum_probs=271.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++++.+++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            68999999999999999999999999999999999888888899889999999999999999999888899988666778


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++.++||+|++.+...+.+.+.+.+.+++|+++|+++++.....+...++++++++.+++++++|+.+|.+++++
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL  161 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence            88899999999999999999999999998899999999999998877788888899999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      ++.+.+.+.|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.+|+++.+.+.+.+++|.++|+++.+.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pdu_A          162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +.+.+++++.|+++|+++.+.++++.+.+.|+|++|++++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  287 (287)
T 3pdu_A          242 RLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA  287 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999863

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=2.6e-44  Score=329.42  Aligned_cols=291  Identities=24%  Similarity=0.400  Sum_probs=269.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ...|+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|... ..+++++++++|+|++|+|.+..++.++++
T Consensus         5 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~   84 (303)
T 3g0o_A            5 GTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFG   84 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC-
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhC
Confidence            3458999999999999999999999999999999999888888888877 789999999999999999988889999866


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~  227 (359)
                      .+++.+.+++++++||+|+..+...+.+.+.+.+.++.|+++|+++++.....+...++++++++.+++++++|+.+|.+
T Consensus        85 ~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~  164 (303)
T 3g0o_A           85 EDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN  164 (303)
T ss_dssp             -CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred             hhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCC
Confidence            57788889999999999999999999999999888999999999999888888888899999999999999999999999


Q ss_pred             eEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhH
Q 018213          228 RFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH  306 (359)
Q Consensus       228 ~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  306 (359)
                      ++++++ ++.+.+.|+++|.+.+..+++++|++.++++.|++++++.+++..+.+.+|.++++.+.+..++|.++|+++.
T Consensus       165 ~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  244 (303)
T 3g0o_A          165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDI  244 (303)
T ss_dssp             EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHH
T ss_pred             EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHH
Confidence            999998 9999999999999999999999999999999999999999999999899999999889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhCC
Q 018213          307 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK  359 (359)
Q Consensus       307 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~  359 (359)
                      +.||++.+++++++.|+++|+++.+.++++.+.+.|+|++|+++++++++.++
T Consensus       245 ~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  297 (303)
T 3g0o_A          245 FVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEG  297 (303)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999987653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=100.00  E-value=5e-44  Score=325.13  Aligned_cols=285  Identities=55%  Similarity=0.902  Sum_probs=271.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.+++++++++|+|++|+|.+.+++.++++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            78999999999999999999999999999999999998888899999999999999999999999888999998666777


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.+++++++||+++..+.+.+.+.+.+.+.++.|+++|+++++.....+...++++++++.+++++++++.+|.+++++
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL  161 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence            88899999999999999999999999999999999999999998877778888899999999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      ++.+.+.+.|+++|.+.+.++.+++|++.++++.|++++++.+++..+.+.+|+++.+.+.+..++|.++|+++.+.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pef_A          162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      +.+.+++++.|+++|+++.+.++++.+.+.|+|++|+++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~  286 (287)
T 3pef_A          242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence            999999999999999999999999999999999999999998875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=100.00  E-value=1.6e-41  Score=310.96  Aligned_cols=283  Identities=19%  Similarity=0.273  Sum_probs=256.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ...++|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+....+++++++++|+||+++|.+.+++.++  .
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~--~   84 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVL--G   84 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHH--T
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHh--c
Confidence            45689999999999999999999999999999999998888888888888999999999999999999888899988  2


Q ss_pred             c-cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213          149 H-GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       149 ~-~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~  227 (359)
                      + .+ ..+++++++||+|+..+...+.+.+.+.+.++.|+++|+++.++....+...++++++++.+++++++|+.+|.+
T Consensus        85 ~~~l-~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~  163 (306)
T 3l6d_A           85 MPGV-ARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGH  163 (306)
T ss_dssp             STTH-HHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSE
T ss_pred             ccch-hhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCC
Confidence            2 43 456799999999999999999999999999999999999998776666667788999999999999999999889


Q ss_pred             eEEe--Cc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--ccchhhhhcccccccCCCCCC-
Q 018213          228 RFYL--GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA--ISAPMYSLKGPSMIESLYPTA-  301 (359)
Q Consensus       228 ~~~~--g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~-  301 (359)
                      ++++  |+ ++.+...|    .+.+..+++++|++.++++.|++++++.+++..+.  +.+|+++.+.+.+..++|.++ 
T Consensus       164 ~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  239 (306)
T 3l6d_A          164 TVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQ  239 (306)
T ss_dssp             EEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTS
T ss_pred             EEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCc
Confidence            9999  87 89899988    45566788999999999999999999999999875  688999988999999999876 


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      |+++.+.||++++++++++.|+++|+.+++.++|+.+.+.|+|++|+++++++|++.
T Consensus       240 ~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~  296 (306)
T 3l6d_A          240 ARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFARE  296 (306)
T ss_dssp             SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC--
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhH
Confidence            689999999999999999999999999999999999999999999999999988653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=100.00  E-value=7.7e-40  Score=298.56  Aligned_cols=269  Identities=27%  Similarity=0.360  Sum_probs=250.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      .|+|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.+++++++ +|+|++|+|.+.+++.++   ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~   90 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GE   90 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HH
Confidence            47899999999999999999999999999999999999998889999999999998 999999999888999998   78


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +.+.+++++++||+|+..+...+.+.+.+.+.+++|+++|+++++.....+.+.++++++++.+++++++|+.+|.++++
T Consensus        91 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  170 (296)
T 3qha_A           91 LAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIH  170 (296)
T ss_dssp             HHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEE
Confidence            88889999999999999999999999999989999999999999888788888899999999999999999999999999


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhccccchhhhhcccccccCCCCCCcch
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL------VEVVSQGAISAPMYSLKGPSMIESLYPTAFPL  304 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      +++++.+++.|++.|.+.+..+++++|++.++++.|++++++      .+++..+.+.|+..+  .+++..+ |.++|.+
T Consensus       171 ~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~  247 (296)
T 3qha_A          171 AGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQP  247 (296)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCch
Confidence            999999999999999999999999999999999999999999      999998888776554  7788887 8899998


Q ss_pred             -----hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCc
Q 018213          305 -----KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE  346 (359)
Q Consensus       305 -----~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~  346 (359)
                           +.+.||++.+.+++++.|+++|+++.+.++|..+.+.|++++
T Consensus       248 ~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~  294 (296)
T 3qha_A          248 FLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred             hhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence                 999999999999999999999999999999999999988543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=100.00  E-value=1.1e-38  Score=291.75  Aligned_cols=286  Identities=31%  Similarity=0.542  Sum_probs=259.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||..++..|...|++|.+|||++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++++.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            68999999999999999999999999999999988888887788888899999999999999999888888887432456


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++++||+++++.+.+.+.+.+.+.+.++.++++|+++.++....+...++++++++.++.+.++|+.+|.+++++
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  165 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  165 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            67789999999999999988889999988889999999988876655556667788889999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      ++.+.+.+.|++.|.+...++.++.|++.++++.|++++++.+++..+...++.+....+++.++++.++++++...||+
T Consensus       166 ~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  245 (299)
T 1vpd_A          166 GDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  245 (299)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777777677888888888899999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +.++++++++|+++|++++++++++.+.+.|+|++|++++++.+++
T Consensus       246 ~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  291 (299)
T 1vpd_A          246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK  291 (299)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=100.00  E-value=3.9e-38  Score=288.31  Aligned_cols=287  Identities=30%  Similarity=0.521  Sum_probs=258.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      .|+|+|||+|.||..++..|...|++|++|||++++.+.+.+.|+....+++++++++|+|++|+|++.+++.++.+.++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            47899999999999999999999999999999998888777778888889999999999999999988889998821126


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +.+.++++++||+++++.+.+.+.+.+.+.+.+++++++|+.+++.....+...++++++++.++.+.++|+.+|.++++
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  163 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH  163 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence            67778999999999999988888899988888899999888776644444665677888999999999999999999988


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-ccccCCCCCCcchhHHHH
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQK  309 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~k  309 (359)
                      +++.+.+.+.|++.|.+...+..++.|++.++++.|++++++.+++..+...++.+....+ ++.++++.++++++.+.|
T Consensus       164 ~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~k  243 (301)
T 3cky_A          164 VGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHK  243 (301)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHH
Confidence            9999999999999999999999999999999999999999999999988777777777788 888889988999999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          310 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       310 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      |++.++++++++|+++|++++++++++++.+.|+|++|++++++.+++
T Consensus       244 d~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  291 (301)
T 3cky_A          244 DLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ  291 (301)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=7.9e-38  Score=285.40  Aligned_cols=285  Identities=33%  Similarity=0.550  Sum_probs=256.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||+.+++.|...|++|++|| ++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++.+.+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            789999999999999999999999999999 9888888887788888899999999999999999888899988211267


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.++++++||+++++.+.+.+.+.+.+.+.+++++++|+.+++.....+...++++++++.++.+.++|+.+|.+++++
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  162 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV  162 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence            77889999999999999888889999888888899988888765444456666778889999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  311 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  311 (359)
                      ++.+.+.+.|++.|.+...+..++.|+..++++.|++++++.+++..+...++.+....+.+.++++.++++++.+.||+
T Consensus       163 ~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~  242 (295)
T 1yb4_A          163 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL  242 (295)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777766666778888899999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +.+++++++.|+++|+++++.++++++.+.|+|++|++++++.+++
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  288 (295)
T 1yb4_A          243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL  288 (295)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=100.00  E-value=2.4e-37  Score=282.32  Aligned_cols=287  Identities=29%  Similarity=0.484  Sum_probs=250.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+....+++++++++|+|++|+|++.+++.++...+.+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            57999999999999999999999999999999988888887788888899999999999999999898999988211124


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      ++.+++++++|++++..+.....+.+.+.+.+..++++|+.+++.....+...++.+++++.++.+.++|+.+|.+++++
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~  160 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC  160 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            55778999999988888888888888777778889999988765444456667788889999999999999999999999


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcc--c-----ccccCCCCCCcch
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG--P-----SMIESLYPTAFPL  304 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~--~-----~~~~~~~~~~~~~  304 (359)
                      +..+.+.+.|++.|.+......++.|++.++++.|++++++.+++..+.+.++++....  +     ++..+++.++|++
T Consensus       161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~  240 (296)
T 2gf2_A          161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT  240 (296)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence            98999999999999988888999999999999999999999999998766776665432  2     3344678888999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          305 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       305 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      +.+.||++.++++++++|+++|++++++++++.+.+.|++++|++++++.+++.
T Consensus       241 ~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~  294 (296)
T 2gf2_A          241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=285.62  Aligned_cols=286  Identities=46%  Similarity=0.770  Sum_probs=256.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      .|+|+|||+|.||..+|..|...|++|++|||++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++.....
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            47899999999999999999999999999999998888888788888888999999999999999988889988821113


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +++.++++++||+++++.+...+.+.+.+...+..++++|+++.+.....+...++++++++.++.+.++|+.+|.++++
T Consensus       110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  189 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF  189 (316)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEE
Confidence            45678899999999999998888898888777889999998887666666777777788999999999999999999999


Q ss_pred             eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHH
Q 018213          231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD  310 (359)
Q Consensus       231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  310 (359)
                      +++++.+.+.|++.|.+.+.+..++.|++.++++.|++++++.+++..+...++.+....+.+.++++.++++++.+.||
T Consensus       190 ~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd  269 (316)
T 2uyy_A          190 LGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKD  269 (316)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887777777766778888889899999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  356 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  356 (359)
                      ++.+++++++.|+++|+++++.++++++.+.|+|++|++++++.++
T Consensus       270 ~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~  315 (316)
T 2uyy_A          270 LRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI  315 (316)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=100.00  E-value=1.2e-37  Score=283.34  Aligned_cols=280  Identities=27%  Similarity=0.418  Sum_probs=251.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |+|+|||+|.||..++..|.. |++|++|||++++.+.+.+.|+.... ++++++++|+|++|+|.+.+++.++   +++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l   76 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL   76 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence            689999999999999999999 99999999999887777766766665 7788889999999999777788888   777


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      .+.+++++++|+++++.+...+.+.+.+.+.++.++++|+++++.....+...++++++++.++.+.++| .+|.+++++
T Consensus        77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~  155 (289)
T 2cvz_A           77 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHV  155 (289)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEE
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEc
Confidence            7788999999999999999888999988877888998888776655555666677788999999999999 999988899


Q ss_pred             CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-ccccCCCCCCcchhHHHHH
Q 018213          232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD  310 (359)
Q Consensus       232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  310 (359)
                      ++.+.+.+.|++.|.+...+..++.|++.++++.|++++++.+++..+...++++....+ ++.++++.++++++.+.||
T Consensus       156 ~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd  235 (289)
T 2cvz_A          156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKD  235 (289)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHH
Confidence            999999999999999999999999999999999999999999999988777777776667 7888888899999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ++.++++++++|+++|+++++.++++++.+.|+|++|++++++.+++
T Consensus       236 ~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~  282 (289)
T 2cvz_A          236 LGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER  282 (289)
T ss_dssp             HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=100.00  E-value=1.2e-37  Score=285.83  Aligned_cols=285  Identities=20%  Similarity=0.250  Sum_probs=231.9

Q ss_pred             CCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC--ccchhHHH
Q 018213           35 FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT--KSKCDPLI  111 (359)
Q Consensus        35 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~--~~~~~~~~  111 (359)
                      .+..+.+.|+++..+...              ....+|+|+|||+|.||..+|+.|.+.|+ +|++|||+  +++.+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~   67 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY--------------FQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE   67 (312)
T ss_dssp             -------------------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH
T ss_pred             CcccccccccccCccccc--------------ccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH
Confidence            455677888765444321              11456899999999999999999999999 99999997  46667777


Q ss_pred             hCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeecC
Q 018213          112 SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEA  189 (359)
Q Consensus       112 ~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~  189 (359)
                      +.|+..+.+++++++++|+||+|+|.+. ...++   +++.+.++++++|||+|+..+.....+.+.+.+.  +++|+++
T Consensus        68 ~~g~~~~~~~~e~~~~aDvVi~~vp~~~-~~~~~---~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~  143 (312)
T 3qsg_A           68 ELGVSCKASVAEVAGECDVIFSLVTAQA-ALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV  143 (312)
T ss_dssp             HTTCEECSCHHHHHHHCSEEEECSCTTT-HHHHH---HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HCCCEEeCCHHHHHhcCCEEEEecCchh-HHHHH---HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence            7889888999999999999999998554 44566   7778889999999999999999999999999888  9999999


Q ss_pred             CCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018213          190 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD  268 (359)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~  268 (359)
                      |++++++.. .+.+.++++++.+  ++++++|+.+|.+++++++ ++.+.+.|+++|.+....+.+++|++.++++.|++
T Consensus       144 pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld  220 (312)
T 3qsg_A          144 AVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLA  220 (312)
T ss_dssp             EECSCSTTT-GGGSEEEEESTTH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             cccCCchhh-cCCEEEEecCChH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999976544 6677888888877  8999999999999999998 89999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCC
Q 018213          269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSD  345 (359)
Q Consensus       269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~  345 (359)
                      + ++.+.+..+. .++.+..+.+.+..++|.++|++   .||++.+++++++.|+++|+++++.++++.+.+.|+++
T Consensus       221 ~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~  292 (312)
T 3qsg_A          221 D-RVLASLDASF-PEHHLRDLALYLVERNLEHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL  292 (312)
T ss_dssp             H-HHHHHHHHHS-GGGTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             H-HHHHHHHhcC-CchhHHHhhhHhhcCCCCcccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence            9 5667777665 35556667788888888877765   79999999999999999999999999999999987654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.5e-37  Score=283.21  Aligned_cols=272  Identities=21%  Similarity=0.307  Sum_probs=231.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCc-------cchhHHHhCCCccCC-CHHHHhhcCCEEEEeeCChhHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTK-------SKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~-------~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .|+|+|||+|.||..+|+.|.+.| ++|++|||++       +..+.+.+.|+  +. ++++++++||+||+|+|.+. .
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~-~  100 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAA-T  100 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGG-H
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHH-H
Confidence            378999999999999999999999 9999999987       33444555576  56 78899999999999998554 4


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL  221 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll  221 (359)
                      ...+   +++.+.++++++|||+|+..+.+.+.+.+.+.+.++.|+++|+++++ ....+.+.++++|+.+  +.++++|
T Consensus       101 ~~~~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~--~~~~~ll  174 (317)
T 4ezb_A          101 KAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA--VEVAERL  174 (317)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH--HHHHHHH
T ss_pred             HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH--HHHHHHH
Confidence            4455   67778899999999999999999999999999889999999999864 3445677788888776  8999999


Q ss_pred             HHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhcccccccCCCC
Q 018213          222 DIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYP  299 (359)
Q Consensus       222 ~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~  299 (359)
                      +.+|.+++++++ +|.+++.|++.|.+....+++++|++.++++.|++++.+ +.+..+. +.++  ..+.+.+..++|.
T Consensus       175 ~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~-~~l~~~~~~~~~--~~~~~~~~~~~~~  251 (317)
T 4ezb_A          175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERIL-DSVQETFPGLDW--RDVADYYLSRTFE  251 (317)
T ss_dssp             HTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHSTTSCH--HHHHHHHHHHHHH
T ss_pred             HHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHHHhcCccccH--HHhhhhhhcCCCC
Confidence            999999999998 999999999999999999999999999999999999654 5554433 2222  4456677777777


Q ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHH----HHHHHHCCCC-CccHHHHHHHHHh
Q 018213          300 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANEL----YKVAKSHGLS-DEDFSAVIEALKA  357 (359)
Q Consensus       300 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~a~~~g~~-~~d~~~~~~~~~~  357 (359)
                      ++|.   +.||++.+.+++++.|+++|+++++.++    ++.+.+.|++ ++||+++++.++.
T Consensus       252 ~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~  311 (317)
T 4ezb_A          252 HGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLAR  311 (317)
T ss_dssp             HHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHH
T ss_pred             CCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            7665   4899999999999999999999999999    7777788887 9999999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=100.00  E-value=4.8e-34  Score=265.32  Aligned_cols=277  Identities=21%  Similarity=0.320  Sum_probs=236.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcC---CEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC---DVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~a---Divi~~~p~~~~~~~~~  145 (359)
                      +++|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+.+++++++.+   |+|++++|.+ .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            556899999999999999999999999999999999998888888998889999999999   9999999866 899998


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG  225 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg  225 (359)
                         +++.+.++++.+|||++++.+.+...+.+.+.++++.|+++|++|++.....+. .++++|+++++++++++|+.++
T Consensus        99 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg  174 (358)
T 4e21_A           99 ---QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLA  174 (358)
T ss_dssp             ---HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHS
T ss_pred             ---HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhc
Confidence               788889999999999999999999999999999999999999999998888787 7889999999999999999999


Q ss_pred             --------------------CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------
Q 018213          226 --------------------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV--------------------  265 (359)
Q Consensus       226 --------------------~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~--------------------  265 (359)
                                          .+++++|+.|.++..|+++|.+.+..+.+++|++.++++.                    
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~  254 (358)
T 4e21_A          175 PGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPD  254 (358)
T ss_dssp             CCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGG
T ss_pred             cccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccch
Confidence                                5788999999999999999999999999999999999998                    


Q ss_pred             ----CCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCCc-chhHHHHH---HHHHHHHHHhcCCCchHHHHHHHHHH
Q 018213          266 ----GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF-PLKHQQKD---LRLALGLAESVSQSTPIAAAANELYK  336 (359)
Q Consensus       266 ----Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~  336 (359)
                          |++.+++.+.++.++ ..|++++...+.+..+   |.+ .+....+|   .++++..+.+.|+|+|++.+.  ++.
T Consensus       255 ~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~---p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~~  329 (358)
T 4e21_A          255 FYRYDLDLADITEVWRRGSVISSWLLDLSATALLDS---PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LYE  329 (358)
T ss_dssp             GCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHC---TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HHH
T ss_pred             hcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhC---CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HHH
Confidence                899999999999887 7899998765544432   111 12222223   367899999999999999865  555


Q ss_pred             HHHHCCCCCccHH-HHHHHHHh
Q 018213          337 VAKSHGLSDEDFS-AVIEALKA  357 (359)
Q Consensus       337 ~a~~~g~~~~d~~-~~~~~~~~  357 (359)
                      +...+  ++..+. .++...++
T Consensus       330 ~~~s~--~~~~~~~~l~~a~r~  349 (358)
T 4e21_A          330 RFSSR--GEDDFANRLLSAMRY  349 (358)
T ss_dssp             HHHHT--TTTHHHHHHHHHHC-
T ss_pred             HHHHC--CCcccHHHHHHHHHH
Confidence            55554  455554 57776654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=100.00  E-value=3.8e-33  Score=267.38  Aligned_cols=265  Identities=17%  Similarity=0.199  Sum_probs=228.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC-----CccCCCHHHHhh---cCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----AKYQPSPDEVAA---SCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----~~~~~~~~~~~~---~aDivi~~~p~~~~~  141 (359)
                      .+|+|||||+|.||..+|+.|.+.|++|++|||++++.+.+.+.+     +..+.+++++++   ++|+|++++|.+..+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            457899999999999999999999999999999999888877653     233678999887   499999999987889


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL  221 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll  221 (359)
                      +.++   +++.+.++++.+|||++++.+.+...+.+.+.+.|++|+++|++|++.....++ .++++|++++++.++++|
T Consensus        83 ~~vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll  158 (484)
T 4gwg_A           83 DDFI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIF  158 (484)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHH
T ss_pred             HHHH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHH
Confidence            9998   888899999999999999999999999999999999999999999988777777 678899999999999999


Q ss_pred             HHhCCCe-------EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhccccchhhhhcc
Q 018213          222 DIMGKSR-------FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVV---SQGAISAPMYSLKG  290 (359)
Q Consensus       222 ~~lg~~~-------~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~---~~~~~~s~~~~~~~  290 (359)
                      +.++.++       +++|+.|.++.+|+++|.+.+..+++++|++.++++ .|++++++.+++   +.+.+.||+++.+.
T Consensus       159 ~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~  238 (484)
T 4gwg_A          159 QGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA  238 (484)
T ss_dssp             HHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred             HHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHH
Confidence            9999887       889999999999999999999999999999999999 999999998886   56788999999988


Q ss_pred             cccccCCCCCCcchhHHH-----HHH-HHHHHHHHhcCCCchHH-HHHHHHHHHH
Q 018213          291 PSMIESLYPTAFPLKHQQ-----KDL-RLALGLAESVSQSTPIA-AAANELYKVA  338 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~-~~~~~~~~~a  338 (359)
                      +.+..+|+..++.++...     |+. .+..+.+.++|+|+|++ +++...+..+
T Consensus       239 ~~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~  293 (484)
T 4gwg_A          239 NILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  293 (484)
T ss_dssp             HHHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence            888877766445555532     222 45667788999999954 4555555443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-32  Score=262.29  Aligned_cols=256  Identities=16%  Similarity=0.202  Sum_probs=229.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----CCCccCCCHHHHhhc---CCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAAS---CDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~  143 (359)
                      .+|||||+|.||+.+|..|.+.|++|++|||++++.+.+.+     .|+..+.+++++++.   +|+|++++|.+..++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            57999999999999999999999999999999999888877     477778899999887   9999999997789999


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++   +++.+.+++|.+|||++++.+.+...+.+.+.+.++.|+++|+++++.....++ .++++++++.++.++++|+.
T Consensus        91 vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~  166 (497)
T 2p4q_A           91 LI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQS  166 (497)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred             HH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHH
Confidence            99   788888999999999999999998899998988899999999999887766677 57778899999999999999


Q ss_pred             hCCC------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhccccc
Q 018213          224 MGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSM  293 (359)
Q Consensus       224 lg~~------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~  293 (359)
                      +|.+      ++++++.|.+.+.|++.|.+.+..+.+++|++.++++ .|++++++.+++.   .+.+.|++++.+.+.+
T Consensus       167 ~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l  246 (497)
T 2p4q_A          167 ISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDIL  246 (497)
T ss_dssp             HSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHH
T ss_pred             hcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence            9987      6788889999999999999999999999999999999 5999999999984   5678889998888778


Q ss_pred             ccCCCCCCcchhHHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018213          294 IESLYPTAFPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       294 ~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~  331 (359)
                      .++++.+++.++.+.     ||++ ++.+.+.+.|+++|++..+
T Consensus       247 ~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a  290 (497)
T 2p4q_A          247 KFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA  290 (497)
T ss_dssp             TCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence            888886667888776     7776 7899999999999999885

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.98  E-value=7.5e-32  Score=260.10  Aligned_cols=259  Identities=20%  Similarity=0.244  Sum_probs=227.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHHhhc---CCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivi~~~p~~~~~  141 (359)
                      +++++|||||+|.||+++|..|.+.|++|.+|||++++.+.+.+.    |+..+.++++++++   +|+|++++|.+..+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            667899999999999999999999999999999999888877764    77778899999887   99999999976789


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL  221 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll  221 (359)
                      +.++   +++.+.++++.+|||++++.+.+...+.+.+++.++.++++|+++++.....++ .++++++++.++.++++|
T Consensus        93 ~~vl---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll  168 (480)
T 2zyd_A           93 DAAI---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL  168 (480)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHH
T ss_pred             HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHH
Confidence            9999   788888999999999999999998889898988899999999998887666677 578889999999999999


Q ss_pred             HHhCCC-------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhcc
Q 018213          222 DIMGKS-------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKG  290 (359)
Q Consensus       222 ~~lg~~-------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~  290 (359)
                      +.+|.+       +.++++.|.+.+.|++.|.+.+..+.+++|++.++++ .|++++++.+++.   .+...++++..+.
T Consensus       169 ~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~  248 (480)
T 2zyd_A          169 TKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK  248 (480)
T ss_dssp             HHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHH
T ss_pred             HHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHH
Confidence            999987       6788999999999999999999999999999999999 6999999998884   4667888888877


Q ss_pred             cccccCCCCCCcchhHHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018213          291 PSMIESLYPTAFPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~  331 (359)
                      +.+.++++.+++.++...     |+.+ ++.+.+.+.|+++|+++.+
T Consensus       249 ~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a  295 (480)
T 2zyd_A          249 DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES  295 (480)
T ss_dssp             HHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence            777777886667777654     4444 7889999999999999886

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.97  E-value=2.5e-30  Score=250.33  Aligned_cols=263  Identities=16%  Similarity=0.183  Sum_probs=227.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----CCCccCCCHHHHhh---cCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAA---SCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~---~aDivi~~~p~~~~~~~  143 (359)
                      |+|||||+|.||+.+|..|...|++|.+|||++++.+.+.+     .|+..+.+++++++   ++|+|++++|.+..++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            67999999999999999999999999999999998888876     57777889999875   89999999987678999


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++   +++.+.++++.+||+++++.+.+...+.+.+.+.++.++++|+++++.....++ .++++++++..+.++++|+.
T Consensus        83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~  158 (482)
T 2pgd_A           83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG  158 (482)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred             HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHH
Confidence            98   778888999999999999999888888888888899999999988877666666 45778889999999999999


Q ss_pred             hCCCe-------EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hccccchhhhhcccc
Q 018213          224 MGKSR-------FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVS---QGAISAPMYSLKGPS  292 (359)
Q Consensus       224 lg~~~-------~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~---~~~~~s~~~~~~~~~  292 (359)
                      +|.++       .++++.+.+.+.|++.|.+.+..+.++.|++.++++. |++++++.+++.   .+...|++.+.+.+.
T Consensus       159 ~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~  238 (482)
T 2pgd_A          159 IAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI  238 (482)
T ss_dssp             HSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred             hhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence            99876       6778899999999999999999999999999999999 999999999985   455778888877666


Q ss_pred             cccCCCCCCcchhHH------HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHH
Q 018213          293 MIESLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAA-AANELYKVA  338 (359)
Q Consensus       293 ~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~a  338 (359)
                      +..+++.+++.++..      .++..++.++++++|+|+|++. ++++.+...
T Consensus       239 l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~  291 (482)
T 2pgd_A          239 LKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  291 (482)
T ss_dssp             HHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence            777777776777765      3556788999999999999995 677666444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.97  E-value=3.2e-30  Score=249.07  Aligned_cols=257  Identities=19%  Similarity=0.284  Sum_probs=222.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHHhhc---CCEEEEeeCChhHHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPESAMD  143 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~  143 (359)
                      .++|||||+|.||+.+|..|...|++|.+|||++++.+.+.+.    |+..+.+++++++.   +|+|++++|.+..++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            4789999999999999999999999999999999888877654    67778899999876   9999999987778999


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++   +++.+.+++|.+||+++++.+.+...+.+.+.+.++.++++|+++++.....++ .++++++++.++.++++|+.
T Consensus        85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~  160 (474)
T 2iz1_A           85 TI---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQ  160 (474)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHH
T ss_pred             HH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHH
Confidence            98   778888999999999999999888888888887899999999988876656666 45678899999999999999


Q ss_pred             hCCC--------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhccc
Q 018213          224 MGKS--------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGP  291 (359)
Q Consensus       224 lg~~--------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~  291 (359)
                      +|.+        +.++++.+.+.+.|++.|.+.+..+.++.|++.++++ .|++++++.+++.   .+...|++.+.+.+
T Consensus       161 ~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~  240 (474)
T 2iz1_A          161 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE  240 (474)
T ss_dssp             HSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred             HhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence            9987        5778889999999999999999999999999999999 7999999998885   35567787877766


Q ss_pred             ccccCCCCCC-cchhHHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018213          292 SMIESLYPTA-FPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       292 ~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~  331 (359)
                      .+..+++.++ +.++...     ||++ ++.+.+.+.|+++|+++.+
T Consensus       241 ~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a  287 (474)
T 2iz1_A          241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES  287 (474)
T ss_dssp             HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence            6667788766 6777654     6666 6889999999999999886

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.97  E-value=7.9e-30  Score=246.22  Aligned_cols=255  Identities=19%  Similarity=0.270  Sum_probs=219.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C-------CccCCCHHHHhhc---CCEEEEeeCChhH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAAS---CDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~~---aDivi~~~p~~~~  140 (359)
                      |+|||||+|.||+.+|..|...|++|.+|||++++.+.+.+. |       +..+.+++++++.   +|+|++++|.+..
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            579999999999999999999999999999999888777654 5       5667789998874   9999999987678


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL  220 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l  220 (359)
                      ++.++   +++.+.++++++||+++++.+.+...+.+.+.+.++.++++|+.+++.....++ .++++++++..+.++++
T Consensus        82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l  157 (478)
T 1pgj_A           82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI  157 (478)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred             HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHH
Confidence            99998   778888999999999999999888888888888889999999988776655666 46678899999999999


Q ss_pred             HHHhCCC-------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hccccchhhhhc
Q 018213          221 LDIMGKS-------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS----QGAISAPMYSLK  289 (359)
Q Consensus       221 l~~lg~~-------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~----~~~~~s~~~~~~  289 (359)
                      |+.+|.+       ++++++.+.+.+.|++.|.+.+..+.++.|++.++++.|++++++.+++.    .+.+.+++.+.+
T Consensus       158 l~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~  237 (478)
T 1pgj_A          158 VEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDIS  237 (478)
T ss_dssp             HHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred             HHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhh
Confidence            9999987       67888899999999999999999999999999999999999999999986    566777777776


Q ss_pred             ccccccCCCCCC-cchhHHH-----HHH-HHHHHHHHhcCCCchHHHHH
Q 018213          290 GPSMIESLYPTA-FPLKHQQ-----KDL-RLALGLAESVSQSTPIAAAA  331 (359)
Q Consensus       290 ~~~~~~~~~~~~-~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~  331 (359)
                      .+.+.++++ ++ +.++...     |++ ++++++++++|+|+|+++.+
T Consensus       238 ~~~l~~~d~-~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a  285 (478)
T 1pgj_A          238 IAAARAKDK-DGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA  285 (478)
T ss_dssp             HHHHHCBCT-TSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             chhhhcCCC-CChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence            665656666 34 6666654     444 68999999999999999983

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.97  E-value=3.5e-30  Score=231.03  Aligned_cols=255  Identities=18%  Similarity=0.273  Sum_probs=203.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcC--CccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~--~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |+|+|||+|+||..+|+.|.+.|++|++|||  +++..+.+.+.|+.  .+++++++++|+|++|+|.+...+. +   .
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~-~---~   74 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGA-A---R   74 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHH-H---H
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHH-H---H
Confidence            5799999999999999999999999999998  55556666666776  6788888999999999985555554 4   4


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeE
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF  229 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~  229 (359)
                      ++.+.+++  ++|+++++.+.+.+.+.+.+.+.+  ++++|+++.+.....+.. ++++++.+  +.+++ |+.+|.+++
T Consensus        75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~  146 (264)
T 1i36_A           75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIE  146 (264)
T ss_dssp             HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEE
T ss_pred             HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeE
Confidence            45566665  999999998888888888887666  788888887665555666 66777655  78888 999999988


Q ss_pred             EeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHH
Q 018213          230 YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ  308 (359)
Q Consensus       230 ~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  308 (359)
                      ++++ ++.+.+.|++.|.+.+.++.++.|++.++++.|++++ ..+.+..+.+.++..  ..+++..+++.++++   ..
T Consensus       147 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~---~~  220 (264)
T 1i36_A          147 VRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAISRLKSSCIHARR---RY  220 (264)
T ss_dssp             ECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHHHHHHHHHHTHHH---HH
T ss_pred             ECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHHHHhcCCCCcchh---hH
Confidence            8888 8999999999999999999999999999999999987 668877655434332  344566666766654   57


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCcc
Q 018213          309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED  347 (359)
Q Consensus       309 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d  347 (359)
                      ||++.+.+++++. +++|+++++.++++.+.+.|++..|
T Consensus       221 ~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~  258 (264)
T 1i36_A          221 EEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA  258 (264)
T ss_dssp             HHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence            9999999999999 9999999999999999887765443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.96  E-value=2.2e-27  Score=225.96  Aligned_cols=256  Identities=15%  Similarity=0.120  Sum_probs=206.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  131 (359)
                      .+|+|||+|.||..+|..|++.|++|++||+++++++.+.+.                    ++..++++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            579999999999999999999999999999999988877652                    135567888999999999


Q ss_pred             EEeeCChh----------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC----CeeecCCCCCCCcc
Q 018213          132 FAMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKP  197 (359)
Q Consensus       132 i~~~p~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~  197 (359)
                      |+|+|.+.          .++.++   +.+.+.++++++||+.|+..|...+.+.+.+.+.+    +.++..|.+..+..
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~  165 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGA  165 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTS
T ss_pred             EEEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccccccc
Confidence            99998764          478887   77888899999999999999999999998887653    45555665544432


Q ss_pred             cc---CCceEEEecC-CHHHHHHHHHHHHHhCCC---eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213          198 AE---DGQLIFLAAG-DKSLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  270 (359)
Q Consensus       198 ~~---~~~~~~~~~g-~~~~~~~v~~ll~~lg~~---~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  270 (359)
                      ..   ..+..+++++ +++..+.++++++.++..   ++.+++++.++..|++.|.+.+..+++++|+..++++.|++++
T Consensus       166 a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~  245 (446)
T 4a7p_A          166 AIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQ  245 (446)
T ss_dssp             HHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            20   1122355665 588999999999988775   5788899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          271 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       271 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                      ++.+++......++       ...  ...++|....+.||+.++...+++.|+++|+++++.++.....
T Consensus       246 ~v~~~~~~~~rig~-------~~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~~  305 (446)
T 4a7p_A          246 EVSRGIGMDNRIGG-------KFL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARK  305 (446)
T ss_dssp             HHHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCC-------ccC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999987531111       111  1224577788999999999999999999999999988876653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.95  E-value=1.4e-26  Score=221.52  Aligned_cols=253  Identities=16%  Similarity=0.163  Sum_probs=205.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  131 (359)
                      |+|+|||+|.||..+|..|++.|++|++||+++++.+.+.+.                    ++..+++++++++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            789999999999999999999999999999999887776541                    234567888889999999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC--------CeeecCCCCCC
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--------ASFLEAPVSGS  194 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--------~~~~~~~~~~~  194 (359)
                      |+|+|.+.         .++.++   +++.+.++++++||+.|+..|...+.+.+.+.+.+        +.++..|.+..
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~  159 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK  159 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence            99998664         788888   78888899999999999999998888888776532        33444555544


Q ss_pred             Ccccc---CCceEEEecC-CHHHHHHHHHHHHHhCC--CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018213          195 KKPAE---DGQLIFLAAG-DKSLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD  268 (359)
Q Consensus       195 ~~~~~---~~~~~~~~~g-~~~~~~~v~~ll~~lg~--~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~  268 (359)
                      +....   ..+..+++++ +++..+.++++++.++.  .+++.++++.+++.|++.|.+.+..+++++|+..++++.|++
T Consensus       160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid  239 (450)
T 3gg2_A          160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGAD  239 (450)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            32220   1111345554 68999999999999876  367788888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      ++++.+++...+           ++....+.|+  |....+.||+.++...+++.|+++|+++++.++.+..
T Consensus       240 ~~~v~~~~~~~~-----------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~  300 (450)
T 3gg2_A          240 VSMVRLGIGSDS-----------RIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ  300 (450)
T ss_dssp             HHHHHHHHHTST-----------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-----------CCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            999999998642           2222334444  6777899999999999999999999999998887654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.95  E-value=1.4e-26  Score=221.55  Aligned_cols=257  Identities=16%  Similarity=0.092  Sum_probs=207.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CC-cEEEEcCCcc----chhHHHh---------------------CC-CccCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKS----KCDPLIS---------------------LG-AKYQPS  120 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~-~V~~~d~~~~----~~~~~~~---------------------~g-~~~~~~  120 (359)
                      ...|+|+|||+|.||..+|..|+.. |+ +|++||++++    +++.+.+                     .+ +..+++
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            3458999999999999999999999 99 9999999998    6665543                     11 233444


Q ss_pred             HHHHhhcCCEEEEeeCChh--------H---HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHH--hcC----
Q 018213          121 PDEVAASCDVTFAMLADPE--------S---AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK--ATG----  183 (359)
Q Consensus       121 ~~~~~~~aDivi~~~p~~~--------~---~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~--~~~----  183 (359)
                       .+.+++||+||+|+|.+.        +   +....   +.+.+.++++++||+.|+..|...+.+.+.+.  ..|    
T Consensus        96 -~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~  171 (478)
T 3g79_A           96 -FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGI---RNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAG  171 (478)
T ss_dssp             -GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHH---HHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBT
T ss_pred             -HHHHhcCCEEEEecCCchhccCCccccHHHHHHHH---HHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcC
Confidence             678899999999998763        2   34444   67778899999999999999999888876432  233    


Q ss_pred             --CeeecCCCCCCCccccCC---ceEEEecCCHHHHHHHHHHHHHh-CCCeEEeCccChHHHHHHHHHHHHHHHHHHHHH
Q 018213          184 --ASFLEAPVSGSKKPAEDG---QLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSE  257 (359)
Q Consensus       184 --~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~v~~ll~~l-g~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~E  257 (359)
                        +.++++|.+..+.....+   +..++.|++++.+++++++++.+ +..++++++++.++..|++.|.+....+++++|
T Consensus       172 ~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE  251 (478)
T 3g79_A          172 EDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQ  251 (478)
T ss_dssp             TTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              467789988766543221   22467888999999999999999 888999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCc--chhHHHHHHHHHHHHHHhcCCC-------chHH
Q 018213          258 GLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQS-------TPIA  328 (359)
Q Consensus       258 a~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~-------~p~~  328 (359)
                      +..+|++.|+|++++.+.+...+    ++     ++....+.|++  ....+.||+.++...+++.|++       ++++
T Consensus       252 ~~~l~e~~GiD~~~v~~~~~~~~----~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li  322 (478)
T 3g79_A          252 LALYCEAMGINVYDVRTGVDSLK----GE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIY  322 (478)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHTSC----CS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHH
T ss_pred             HHHHHHHcCCCHHHHHHHHCCCc----hh-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHH
Confidence            99999999999999999988642    11     34455667765  4557899999999999999987       8999


Q ss_pred             HHHHHHHHHH
Q 018213          329 AAANELYKVA  338 (359)
Q Consensus       329 ~~~~~~~~~a  338 (359)
                      +++.++....
T Consensus       323 ~~~~~iN~~~  332 (478)
T 3g79_A          323 VLARKVNDFM  332 (478)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888766544

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.94  E-value=2.8e-26  Score=219.69  Aligned_cols=253  Identities=17%  Similarity=0.149  Sum_probs=198.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-------------------C-CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv  131 (359)
                      |+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+.                   | +..+.+++++++++|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            589999999999999999999999999999998887776552                   2 44566888888999999


Q ss_pred             EEeeCChhH---------HHHHhcccccccccCCC---CCEEEeccCCChHH-HHHHHHHHHhc-CCee-ecCCCCCCCc
Q 018213          132 FAMLADPES---------AMDVACGKHGAASGMGP---GKGYVDVSTVDGDT-SKLINGHIKAT-GASF-LEAPVSGSKK  196 (359)
Q Consensus       132 i~~~p~~~~---------~~~~~~~~~~~~~~l~~---~~~vi~~s~~~~~~-~~~l~~~l~~~-~~~~-~~~~~~~~~~  196 (359)
                      ++|+|.+..         ++.++   +++.+.+++   +++||+.|+..+.. .+.+.+.+.+. +..+ ++.++...+.
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            999987665         78887   777777888   99999999988887 67777777664 4333 2223222222


Q ss_pred             cccCCce--------EEEecC-CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018213          197 PAEDGQL--------IFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL  267 (359)
Q Consensus       197 ~~~~~~~--------~~~~~g-~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi  267 (359)
                      ....+..        .+++++ +++..+.+.++++.++..++. ++.+.+++.|++.|.+....+++++|+..++++.|+
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi  236 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGV  236 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2222222        344555 488889999999999986554 778889999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhccccchhhhhcccccc--cCCCCC--CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          268 DPNVLVEVVSQGAISAPMYSLKGPSMI--ESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       268 ~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                      +++++.+.+...           +++.  .+.+.+  ++....+.||...+.++++++|+++|+++++.++.....
T Consensus       237 d~~~v~~~~~~~-----------~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~~  301 (436)
T 1mv8_A          237 DGREVMDVICQD-----------HKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQV  301 (436)
T ss_dssp             CHHHHHHHHTTC-----------TTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHHH
T ss_pred             CHHHHHHHhcCC-----------CCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHhH
Confidence            999999888752           1222  233444  455667899999999999999999999999988765543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.94  E-value=5.5e-26  Score=219.05  Aligned_cols=254  Identities=18%  Similarity=0.180  Sum_probs=197.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC--------------------CccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------------AKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~aDi  130 (359)
                      .|+|+|||+|.||..+|..|++.|++|++||+++++++.+.+.+                    +..++++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            48999999999999999999999999999999988887776532                    2345677788899999


Q ss_pred             EEEeeCCh---------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc---C---C--eeecCCCCC
Q 018213          131 TFAMLADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT---G---A--SFLEAPVSG  193 (359)
Q Consensus       131 vi~~~p~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~---~---~--~~~~~~~~~  193 (359)
                      ||+|+|.+         ..++.++   +.+.+.++++++||+.|+.++...+.+.+.+.+.   +   .  .++..|.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~  164 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL  164 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence            99999875         6888888   7788889999999999988888887777776543   2   1  222344333


Q ss_pred             CCccc---cCCceEEEecCC-H----HHHHHHHHHHHHhCC--CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018213          194 SKKPA---EDGQLIFLAAGD-K----SLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE  263 (359)
Q Consensus       194 ~~~~~---~~~~~~~~~~g~-~----~~~~~v~~ll~~lg~--~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~  263 (359)
                      .+...   ...+..++++++ +    +..+.+.++++.++.  .++.+++++.+++.|++.|.+....+++++|+..+++
T Consensus       165 ~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~  244 (478)
T 2y0c_A          165 KEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLAD  244 (478)
T ss_dssp             CTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221   001113445544 5    788999999998764  5788888889999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcch--hHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          264 KVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPL--KHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       264 ~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      +.|++++++.+.+...           +++....+.+++.+  ....||...+.++++++|+++|+++++.+++...
T Consensus       245 ~~Gid~~~v~~~i~~~-----------~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~  310 (478)
T 2y0c_A          245 RFGADIEAVRRGIGSD-----------PRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ  310 (478)
T ss_dssp             HTTCCHHHHHHHHHTS-----------TTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHhcC-----------CccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence            9999999998877632           22333344555433  3468999999999999999999999999988765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.94  E-value=1.4e-25  Score=211.67  Aligned_cols=250  Identities=16%  Similarity=0.118  Sum_probs=199.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC------------------CCccCCCHHHHhhcCCE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCDV  130 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aDi  130 (359)
                      ...|+|+|||+|.||..+|..|++ |++|++||+++++++.+.+.                  ++..+.++++++++||+
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv  112 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY  112 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence            667899999999999999999998 99999999999887766541                  34566788899999999


Q ss_pred             EEEeeCChh----------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccC
Q 018213          131 TFAMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAED  200 (359)
Q Consensus       131 vi~~~p~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  200 (359)
                      ||+|+|.+.          .++.++   +.+.+ ++++++||+.|+.+|...+.+.+.+.+.++  ..+|.++.+..+..
T Consensus       113 ViiaVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v--~~sPe~~~~G~A~~  186 (432)
T 3pid_A          113 VIIATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV--IFSPEFLREGRALY  186 (432)
T ss_dssp             EEECCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE--EECCCCCCTTSHHH
T ss_pred             EEEeCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE--eecCccCCcchhhh
Confidence            999999762          566776   77777 899999999999999999999998876544  44899888766544


Q ss_pred             Cce---EEEecCCHHHHHHHHHHHHH--hCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213          201 GQL---IFLAAGDKSLYNTVAPLLDI--MGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  274 (359)
Q Consensus       201 ~~~---~~~~~g~~~~~~~v~~ll~~--lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~  274 (359)
                      +..   .+++|++++.++++.++|..  ++. ..+..++++.+++.|++.|.+.+..+++++|+..+|++.|+|++++.+
T Consensus       187 ~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~  266 (432)
T 3pid_A          187 DNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIE  266 (432)
T ss_dssp             HHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             cccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            333   67889998999999999987  443 245677899999999999999999999999999999999999999999


Q ss_pred             HHhhccccchhhhhcccccccCCCCC--CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          275 VVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       275 ~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      .+...+..+       +...    .|  |+....+.||.....  +...|++.++++++.++-+..
T Consensus       267 ~~~~dprig-------~~~~----~pg~G~GG~C~pkD~~~L~--~~~~~~~~~li~~~~~~N~~~  319 (432)
T 3pid_A          267 GVCLDPRIG-------NHYN----NPSFGYGGYCLPKDTKQLL--ANYESVPNNIIAAIVDANRTR  319 (432)
T ss_dssp             HHHTSTTTC-------SSSC----CCCSCCCTTTHHHHHHHHH--HHTTTSCCSHHHHHHHHHHHH
T ss_pred             HHccCCCCC-------cccC----CCCCCCcccchhhhHHHHH--HHhcCCchhHHHHHHHHHHhh
Confidence            988643211       1111    23  344456788987775  344699999999998776554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.94  E-value=6.2e-26  Score=218.94  Aligned_cols=248  Identities=16%  Similarity=0.163  Sum_probs=194.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHh-------------------CCCccCCCHHHHhhcCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCD  129 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aD  129 (359)
                      .|+|+|||+|.||..+|..|++.  |++|++||+++++.+.+.+                   .++..+++++++++++|
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            47999999999999999999998  8999999999887766432                   23455678888899999


Q ss_pred             EEEEeeCChhH--------------HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC
Q 018213          130 VTFAMLADPES--------------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  195 (359)
Q Consensus       130 ivi~~~p~~~~--------------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  195 (359)
                      +|++|+|.+..              +..++   +++.+.++++++||++|+..+...+.+.+.+++.+..+++.++...+
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P  161 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP  161 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence            99999986654              33444   55667788999999999999998888888887765434444544444


Q ss_pred             ccccCCceE--------EEecC-----CHHHHHHHHHHHHHh-CCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018213          196 KPAEDGQLI--------FLAAG-----DKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH  261 (359)
Q Consensus       196 ~~~~~~~~~--------~~~~g-----~~~~~~~v~~ll~~l-g~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l  261 (359)
                      .....+...        +++++     +++..+.+.++++.+ +..++++++++.+++.|++.|.+....+++++|+..+
T Consensus       162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l  241 (467)
T 2q3e_A          162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL  241 (467)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444432        45666     778899999999998 7778888999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCC--chHHHHHH
Q 018213          262 SEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQS--TPIAAAAN  332 (359)
Q Consensus       262 ~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~  332 (359)
                      +++.|++++++.+++......+           ...+.|+  +....+.||+.++...+++.|++  .++++++.
T Consensus       242 ~~~~Gid~~~v~~~~~~~~~~~-----------~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~  305 (467)
T 2q3e_A          242 CEATGADVEEVATAIGMDQRIG-----------NKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVI  305 (467)
T ss_dssp             HHHHTCCHHHHHHHHHTSTTTC-----------SSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHcCCCCCC-----------ccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            9999999999999988653211           1112333  44556789999999999999997  45555543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.94  E-value=5.1e-28  Score=222.50  Aligned_cols=176  Identities=16%  Similarity=0.136  Sum_probs=151.1

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|+++.+.+.++.|.|..+......             ..++.+++|||||+|+
T Consensus       119 ~V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~-------------g~~l~gktvGIIGlG~  183 (345)
T 4g2n_A          119 KVLHTPDVLSD--ACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLL-------------GMGLTGRRLGIFGMGR  183 (345)
T ss_dssp             EEECCCSCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTC-------------BCCCTTCEEEEESCSH
T ss_pred             EEEECCcccch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccc-------------ccccCCCEEEEEEeCh
Confidence            45556788877  88999999999999999999999999999743211111             1128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++...+..  .+...++++++++++||+|++|+|.++++++++  +++.++.||+|+++
T Consensus       184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li--~~~~l~~mk~gail  259 (345)
T 4g2n_A          184 IGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFL--DHDRIAKIPEGAVV  259 (345)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHSCTTEEE
T ss_pred             hHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHh--CHHHHhhCCCCcEE
Confidence            99999999999999999999987543322  267777799999999999999999999999999  78889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.++++++|.++|+++.+.....+++..+|
T Consensus       260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            99999999999999999999988888888888776

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.93  E-value=3.8e-25  Score=213.83  Aligned_cols=254  Identities=16%  Similarity=0.133  Sum_probs=199.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhC-------------------CCccCCCHHHHhhcC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASC  128 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~a  128 (359)
                      ..|+|+|||+|.||..+|..|++.  |++|++||+++++.+.+.+.                   ++..++++.+.++++
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            347999999999999999999988  79999999998887766542                   233455677888999


Q ss_pred             CEEEEeeCChh--------------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh-cCC------eee
Q 018213          129 DVTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TGA------SFL  187 (359)
Q Consensus       129 Divi~~~p~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~-~~~------~~~  187 (359)
                      |+||+|+|.+.              .+..++   +.+.+.++++++||+.|+..+...+.+.+.+.+ .++      .+.
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~  164 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL  164 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence            99999998654              367776   777788999999999999999988888888877 442      234


Q ss_pred             cCCCCCCCcccc---CCceEEEecCCH-----HHHHHHHHHHHHhCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHH
Q 018213          188 EAPVSGSKKPAE---DGQLIFLAAGDK-----SLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEG  258 (359)
Q Consensus       188 ~~~~~~~~~~~~---~~~~~~~~~g~~-----~~~~~v~~ll~~lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea  258 (359)
                      .+|.+..+....   .....+++|++.     +.++.++++++.++. .++++++++.+++.|++.|.+....+++++|+
T Consensus       165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~  244 (481)
T 2o3j_A          165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSI  244 (481)
T ss_dssp             ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466554443211   111134455532     577899999999986 78888899999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCc--chhHHHHHHHHHHHHHHhcCCC--chHHHHHHHH
Q 018213          259 LLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQS--TPIAAAANEL  334 (359)
Q Consensus       259 ~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~  334 (359)
                      ..++++.|++++++.+.+....           ++....+.|++  ....+.||+.++...+++.|++  +|+++++.++
T Consensus       245 ~~la~~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~  313 (481)
T 2o3j_A          245 SAVCEATGAEISEVAHAVGYDT-----------RIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVINI  313 (481)
T ss_dssp             HHHHHHHSCCHHHHHHHHHTST-----------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHccCC-----------CCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence            9999999999999999988652           22223455654  5566899999999999999999  8988888765


Q ss_pred             HHH
Q 018213          335 YKV  337 (359)
Q Consensus       335 ~~~  337 (359)
                      -..
T Consensus       314 N~~  316 (481)
T 2o3j_A          314 NNW  316 (481)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.93  E-value=9.1e-28  Score=219.01  Aligned_cols=172  Identities=15%  Similarity=0.096  Sum_probs=147.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|+++.+.+.++.|.|.....     +             ++.+++|||||+|.
T Consensus        91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~-------------~l~g~tvGIIGlG~  150 (324)
T 3hg7_A           91 QLTNVRGIFGP--LMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPY-----Q-------------GLKGRTLLILGTGS  150 (324)
T ss_dssp             EEECCCSCCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----C-------------CSTTCEEEEECCSH
T ss_pred             EEEECCCcChH--HHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCC-----c-------------ccccceEEEEEECH
Confidence            45666888776  8899999999999999999999999999974321     1             18889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||+++....+.  +.....++++++++||+|++|+|.+++|++++  +++.++.|++|+++
T Consensus       151 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~gail  226 (324)
T 3hg7_A          151 IGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLF--TASRFEHCKPGAIL  226 (324)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSB--CTTTTTCSCTTCEE
T ss_pred             HHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHh--HHHHHhcCCCCcEE
Confidence            999999999999999999999875433221  12234689999999999999999999999999  78889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++|+.++++++|.++|+++.+.....+++..+|.
T Consensus       227 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl  262 (324)
T 3hg7_A          227 FNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL  262 (324)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC
T ss_pred             EECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC
Confidence            999999999999999999999888888888877764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.93  E-value=5.7e-28  Score=222.90  Aligned_cols=179  Identities=14%  Similarity=0.108  Sum_probs=154.6

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|......              ....++.+++|||||+|+
T Consensus       111 ~V~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~--------------~~~~~l~gktvGIIG~G~  174 (351)
T 3jtm_A          111 TVAEVTGSNVV--SVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIA--------------YRAYDLEGKTIGTVGAGR  174 (351)
T ss_dssp             EEEECTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHH--------------TTCCCSTTCEEEEECCSH
T ss_pred             eEEECCCcCch--HHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccccc--------------CCcccccCCEEeEEEeCH
Confidence            45566778766  88999999999999999999999999999732100              001128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++...+...+.|+....++++++++||+|++|+|.+++|++++  +++.++.|++|+++
T Consensus       175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gail  252 (351)
T 3jtm_A          175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF--NKELIGKLKKGVLI  252 (351)
T ss_dssp             HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHHHSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhh--cHHHHhcCCCCCEE
Confidence            9999999999999999999998766666666688888899999999999999999999999999  78889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ||++|+.+++++++.++|+++.+.....+++..+|..
T Consensus       253 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  289 (351)
T 3jtm_A          253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAP  289 (351)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCC
T ss_pred             EECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCC
Confidence            9999999999999999999999888888888877643

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.93  E-value=2.9e-25  Score=206.37  Aligned_cols=275  Identities=13%  Similarity=0.093  Sum_probs=204.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC--------------CccCCCHHHHhhcCCEEEEee
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~~  135 (359)
                      ..|+|+|||+|.||.++|..|++.|++|.+|+|++++.+.+.+.+              +..+.+++++++++|+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            458999999999999999999999999999999988877776543              234568888999999999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChHHH----HHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCH
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS----KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDK  211 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  211 (359)
                      | +..++.++   +++.+.+++++++|+++.+.....    +.+.+.+....+.++..|.+..+........+++.+.++
T Consensus       108 p-~~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~  183 (356)
T 3k96_A          108 P-SFAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNS  183 (356)
T ss_dssp             C-HHHHHHHH---HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred             C-HHHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence            7 77899998   888888999999999987654332    344444543456677888877655555555666667799


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCccChHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMK-----------------LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  274 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~k-----------------l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~  274 (359)
                      +..+.++++|+..+++++..++....+|.+                 +..|.....+..++.|+.+++++.|.+++++..
T Consensus       184 ~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~g  263 (356)
T 3k96_A          184 QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG  263 (356)
T ss_dssp             HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcc
Confidence            999999999999999998888843355543                 444566677889999999999999999999885


Q ss_pred             HHhhc----cccchhhhhc--ccccccCCCCC-----CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018213          275 VVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL  343 (359)
Q Consensus       275 ~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~  343 (359)
                      +...+    +..|+..+++  +..+.++....     ...+.++.++.+.+.++++++|+++|+.+++++++.       
T Consensus       264 l~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------  336 (356)
T 3k96_A          264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH-------  336 (356)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------
T ss_pred             cchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------
Confidence            43222    2334444443  22343331110     013456788899999999999999999999999885       


Q ss_pred             CCccHHHHHHHH
Q 018213          344 SDEDFSAVIEAL  355 (359)
Q Consensus       344 ~~~d~~~~~~~~  355 (359)
                      ++.+....++.|
T Consensus       337 ~~~~~~~~~~~l  348 (356)
T 3k96_A          337 EDLDPQQAVQEL  348 (356)
T ss_dssp             SCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            344455555544

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.93  E-value=4.7e-24  Score=201.89  Aligned_cols=248  Identities=15%  Similarity=0.080  Sum_probs=194.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC------------------ccCCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA------------------KYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~------------------~~~~~~~~~~~~aDivi~  133 (359)
                      |+|+|||+|.||..+|..|++ |++|++||+++++.+.+.+.+.                  ....++.+.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            589999999999999999999 9999999999988887766543                  334567788889999999


Q ss_pred             eeCChh----------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc---C
Q 018213          134 MLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE---D  200 (359)
Q Consensus       134 ~~p~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~  200 (359)
                      |+|.+.          .+..++   +.+.+ ++++++||+.|+.++...+.+.+.+...  .++.+|.+..+....   .
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~  153 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL  153 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred             ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence            998663          588887   77777 8899999998999998888888876543  556677665543322   1


Q ss_pred             CceEEEecCCH-------HHHHHHHHHHHHhCCC---eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213          201 GQLIFLAAGDK-------SLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  270 (359)
Q Consensus       201 ~~~~~~~~g~~-------~~~~~v~~ll~~lg~~---~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  270 (359)
                      .+..+++|++.       +..+.+.+++...+..   +++.++++.++|.|++.|.+....+++++|+..++++.|++++
T Consensus       154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~  233 (402)
T 1dlj_A          154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSH  233 (402)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            22225566655       5667778888754332   5778889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhhcccccccCCCCC--CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213          271 VLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  339 (359)
Q Consensus       271 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~  339 (359)
                      ++.+.+....           ++....+.|  ++....+.||..++...++  |+++|+++++.++.....
T Consensus       234 ~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~~  291 (402)
T 1dlj_A          234 MIIQGISYDD-----------RIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVRK  291 (402)
T ss_dssp             HHHHHHHTST-----------TTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCC-----------CCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHhH
Confidence            9999988653           122222345  4667789999999988874  899999999887766543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.93  E-value=4.6e-27  Score=217.16  Aligned_cols=180  Identities=15%  Similarity=0.142  Sum_probs=151.5

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCC----CccccccccccccCCcccccCCCCeEEEE
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPL----FPLSFKVFSSQATGVSAEADELPGRIGFL   77 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~igii   77 (359)
                      .+...|+| ..  +++|++++++|+++|+++.+.+.++.|.|.....    ++.   .       .....++.+++||||
T Consensus       100 ~V~n~pg~-~~--~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~---~-------~~~~~~l~g~tvGII  166 (352)
T 3gg9_A          100 VVLEGKGS-PV--APAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPP---N-------FGIGRVLKGQTLGIF  166 (352)
T ss_dssp             EEECCCCC-SH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCT---T-------TTSBCCCTTCEEEEE
T ss_pred             EEEECCCC-cH--HHHHHHHHHHHHHHhhHHHHHHHHHcCCCCccccccccccc---c-------cccCccCCCCEEEEE
Confidence            34455777 55  8999999999999999999999999999975321    100   0       001123889999999


Q ss_pred             cCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCC
Q 018213           78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP  157 (359)
Q Consensus        78 G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~  157 (359)
                      |+|.||+.+|++++.+|++|++|||++. .+...+.|+...+++++++++||+|++|+|.++++++++  +++.++.|++
T Consensus       167 GlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~mk~  243 (352)
T 3gg9_A          167 GYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII--TVADLTRMKP  243 (352)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCT
T ss_pred             eECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh--CHHHHhhCCC
Confidence            9999999999999999999999999863 344556688877899999999999999999999999999  6788999999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |+++||++|+.+++++++.++|+++.+.....+++..++.
T Consensus       244 gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  283 (352)
T 3gg9_A          244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPI  283 (352)
T ss_dssp             TCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCC
T ss_pred             CcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCC
Confidence            9999999999999999999999999998888888877663

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.93  E-value=5.5e-27  Score=215.21  Aligned_cols=173  Identities=16%  Similarity=0.180  Sum_probs=124.0

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|...  +++|++++++|+++|+++.+.+.++.|.|.....+++. +             ++.+++|||||+|+
T Consensus       118 ~V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~-------------~l~gktiGIIGlG~  181 (340)
T 4dgs_A          118 DVTTTPGVLAD--DVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLG-H-------------SPKGKRIGVLGLGQ  181 (340)
T ss_dssp             EEECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCC-C-------------CCTTCEEEEECCSH
T ss_pred             EEEECCCCCcc--hHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcc-c-------------cccCCEEEEECCCH
Confidence            45556777776  88999999999999999999999999999743111111 1             28889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||+++..     .+.....++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li--~~~~l~~mk~gail  254 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIV--DASLLQALGPEGIV  254 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC------------CHHHHHHTTTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHh--hHHHHhcCCCCCEE
Confidence            99999999999999999999987642     245556799999999999999999999999999  78888999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++|+.+++++++.++|+++.+.....+++..+|.
T Consensus       255 IN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~  290 (340)
T 4dgs_A          255 VNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA  290 (340)
T ss_dssp             EECSCC--------------CCSSEEEESCCSSSSS
T ss_pred             EECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence            999999999999999999999998888889887763

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.93  E-value=8.7e-27  Score=215.46  Aligned_cols=176  Identities=13%  Similarity=0.053  Sum_probs=145.4

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|...  +++|++++++|+++|++..+.+.++.|.|.+.......             ..++.+++|||||+|.
T Consensus       122 ~V~n~~~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~-------------~~~l~gktvGIIGlG~  186 (365)
T 4hy3_A          122 HVVTTGQVFAE--PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNAS-------------ARLIAGSEIGIVGFGD  186 (365)
T ss_dssp             EEEECGGGGHH--HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTS-------------CCCSSSSEEEEECCSH
T ss_pred             EEEeCCCccch--HHHHHHHHHHHHHHhchhHHHHHHHcCCcccccccccc-------------ccccCCCEEEEecCCc
Confidence            45566778776  88999999999999999999999999986532211110             1128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++++.+|++|++|||++. .+...+.|+.. .++++++++||+|++|+|.+++|++++  +++.++.||+|+++
T Consensus       187 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li--~~~~l~~mk~gail  262 (365)
T 4hy3_A          187 LGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFL--GAEAFSSMRRGAAF  262 (365)
T ss_dssp             HHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CC--CHHHHHTSCTTCEE
T ss_pred             ccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhc--CHHHHhcCCCCcEE
Confidence            999999999999999999999853 34445567764 489999999999999999999999999  78889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++||.++++++|.++|+++.+. ...+++..++.
T Consensus       263 IN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl  297 (365)
T 4hy3_A          263 ILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPL  297 (365)
T ss_dssp             EECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSC
T ss_pred             EECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCC
Confidence            999999999999999999999887 67888877663

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.92  E-value=4.7e-27  Score=214.69  Aligned_cols=173  Identities=10%  Similarity=0.043  Sum_probs=146.9

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCc-CCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCC
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSY-FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG   80 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G   80 (359)
                      .+...|+|...  +++|++++++|+++|+++.+ .+.++.+.|.... ..   +             ++.+++|||||+|
T Consensus        86 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~---~-------------~l~gktvGIiGlG  146 (324)
T 3evt_A           86 VVANTSGIHAD--AISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TT---S-------------TLTGQQLLIYGTG  146 (324)
T ss_dssp             EEECCTTHHHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CC---C-------------CSTTCEEEEECCS
T ss_pred             EEEECCCcCch--HHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CC---c-------------cccCCeEEEECcC
Confidence            45566666665  88999999999999999999 9999999997432 01   1             2888999999999


Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      .||+.+|+++..+|++|++|||+++..+.+..  .....++++++++||+|++|+|.+++|++++  +++.++.|++|++
T Consensus       147 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li--~~~~l~~mk~gai  222 (324)
T 3evt_A          147 QIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLF--STELFQQTKQQPM  222 (324)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCB--SHHHHHTCCSCCE
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhc--CHHHHhcCCCCCE
Confidence            99999999999999999999998765433211  1234578999999999999999999999999  7888999999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      +||++|+.+++++++.++|+++.+.....+++..++.
T Consensus       223 lIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  259 (324)
T 3evt_A          223 LINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPL  259 (324)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSC
T ss_pred             EEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCC
Confidence            9999999999999999999999988888888887764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.92  E-value=4.3e-27  Score=216.01  Aligned_cols=175  Identities=15%  Similarity=0.085  Sum_probs=149.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|..+......              .++.+++|||||+|+
T Consensus        92 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~--------------~~l~g~tvGIIG~G~  155 (330)
T 4e5n_A           92 WLTFVPDLLTV--PTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG--------------TGLDNATVGFLGMGA  155 (330)
T ss_dssp             EEECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC--------------CCSTTCEEEEECCSH
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC--------------CccCCCEEEEEeeCH
Confidence            45556788877  88999999999999999999999999999733211111              128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++...+...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++|+++
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gail  232 (330)
T 4e5n_A          156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV--NAELLALVRPGALL  232 (330)
T ss_dssp             HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHh--CHHHHhhCCCCcEE
Confidence            9999999999999999999998755444445566554 89999999999999999999999999  67889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  195 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  195 (359)
                      ||++|+.+++++++.++|+++++.....+++..+
T Consensus       233 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E  266 (330)
T 4e5n_A          233 VNPCRGSVVDEAAVLAALERGQLGGYAADVFEME  266 (330)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred             EECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence            9999999999999999999999888888888766

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.92  E-value=6.7e-27  Score=214.90  Aligned_cols=175  Identities=15%  Similarity=0.118  Sum_probs=150.1

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.+.|..+....               ..++.++++||||+|+
T Consensus        89 ~v~n~p~~~~~--~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~---------------~~~l~g~tvGIiG~G~  151 (334)
T 3kb6_A           89 LVTHIPAYSPE--SVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEIL---------------ARELNRLTLGVIGTGR  151 (334)
T ss_dssp             EEECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGC---------------BCCGGGSEEEEECCSH
T ss_pred             EEEECCCcCcH--HHHHHHHHHHHHHhhccccccccccccccccccccc---------------cceecCcEEEEECcch
Confidence            45566788877  888999999999999999999999999987543211               1127789999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|.+||+.+.  +...+.++.. .++++++++||+|++|+|.+++|++++  +++.++.||+|+++
T Consensus       152 IG~~va~~~~~fg~~v~~~d~~~~--~~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~li--~~~~l~~mk~~a~l  226 (334)
T 3kb6_A          152 IGSRVAMYGLAFGMKVLCYDVVKR--EDLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHMI--NEERISLMKDGVYL  226 (334)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCC--HHHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTEEE
T ss_pred             HHHHHHHhhcccCceeeecCCccc--hhhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccCc--CHHHHhhcCCCeEE
Confidence            999999999999999999998754  3334455554 589999999999999999999999999  88999999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ||++||..+++++|.++|+++.+.....+++..++..
T Consensus       227 IN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~  263 (334)
T 3kb6_A          227 INTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEIL  263 (334)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHH
T ss_pred             EecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCc
Confidence            9999999999999999999999988888998877643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.92  E-value=4.2e-27  Score=214.35  Aligned_cols=172  Identities=12%  Similarity=0.108  Sum_probs=143.5

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|+. ..+++|++++++|++.|+++.+.+.++.+.|.....     +.             +.+++|||||+|.|
T Consensus        90 v~~~~~~~~-~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~~-------------l~g~tvGIiG~G~I  150 (315)
T 3pp8_A           90 LFRLEDTGM-GLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPE-----YT-------------REEFSVGIMGAGVL  150 (315)
T ss_dssp             EEEC--CCC-HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----CC-------------STTCCEEEECCSHH
T ss_pred             EEEcCCCCc-cHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCC-----CC-------------cCCCEEEEEeeCHH
Confidence            344455543 348999999999999999999999999999974321     11             78899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|++++.+|++|++|||+++..+.+...  ....++++++++||+|++|+|.+++|++++  +++.++.|++|+++|
T Consensus       151 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~mk~gailI  226 (315)
T 3pp8_A          151 GAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGII--NSELLDQLPDGAYVL  226 (315)
T ss_dssp             HHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCB--SHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhc--cHHHHhhCCCCCEEE
Confidence            9999999999999999999987654322111  112478999999999999999999999999  788899999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |++||.++++++|.++|+++.+.....+++..++.
T Consensus       227 N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  261 (315)
T 3pp8_A          227 NLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPL  261 (315)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             ECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCC
Confidence            99999999999999999999888888888887764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.92  E-value=1e-26  Score=209.01  Aligned_cols=168  Identities=13%  Similarity=0.142  Sum_probs=145.6

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +++|+....  .+++|++++++|++.|+++.+.+.++.+.|...+.     +.             +.+++|||||+|.|
T Consensus        74 ~~~~~~~~~--~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-----~~-------------l~g~tvGIIGlG~I  133 (290)
T 3gvx_A           74 LCSNAGAYS--ISVAEHAFALLLAHAKNILENNELMKAGIFRQSPT-----TL-------------LYGKALGILGYGGI  133 (290)
T ss_dssp             EECCHHHHH--HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----CC-------------CTTCEEEEECCSHH
T ss_pred             EeecCCcce--eeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCc-----ee-------------eecchheeeccCch
Confidence            455663322  48999999999999999999999999999974321     11             78899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|+++..+|++|++|||+++..+.     ....+++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       134 G~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~l~~mk~gailI  206 (290)
T 3gvx_A          134 GRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMV--NSRLLANARKNLTIV  206 (290)
T ss_dssp             HHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTCCTTCEEE
T ss_pred             hHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhh--hHHHHhhhhcCceEE
Confidence            999999999999999999998765432     4456799999999999999999999999998  678889999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |++|+.+++++++.++++++++.....+++..++.
T Consensus       207 N~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          207 NVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             ECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             EeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            99999999999999999999988888888877753

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.92  E-value=5.4e-24  Score=201.18  Aligned_cols=209  Identities=15%  Similarity=0.150  Sum_probs=169.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-CCHHHH---------------hhcCCEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEV---------------AASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~---------------~~~aDivi  132 (359)
                      -.+.++.|||+|.||..+|..|++.||+|++||+++++++.+.+...... ..++++               +++||+||
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            45678999999999999999999999999999999999888765322111 112222               34799999


Q ss_pred             EeeCChhH-----------HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh-cC------CeeecCCCCCC
Q 018213          133 AMLADPES-----------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TG------ASFLEAPVSGS  194 (359)
Q Consensus       133 ~~~p~~~~-----------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~-~~------~~~~~~~~~~~  194 (359)
                      +|+|.+..           +....   +.+.+.++++++||+.|+..|...+.+.+.+.+ .|      +.++++|.+..
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~---~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~  165 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRAL---DSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVL  165 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHH---HHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCC
T ss_pred             EEeCCCccccccCCccHHHHHHHH---HHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCC
Confidence            99997752           45555   678888999999999999999999999876544 44      36778898766


Q ss_pred             CccccC---CceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018213          195 KKPAED---GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV  271 (359)
Q Consensus       195 ~~~~~~---~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~  271 (359)
                      +..+..   .+..+++|++++..+.++++++.++..++++++++.++..|+++|.+.+..+++++|+..+|++.|+|+++
T Consensus       166 ~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~  245 (431)
T 3ojo_A          166 PGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLD  245 (431)
T ss_dssp             TTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            544321   12356778899999999999999998888889999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 018213          272 LVEVVSQGA  280 (359)
Q Consensus       272 ~~~~~~~~~  280 (359)
                      +.+.+...+
T Consensus       246 v~~~~~~~~  254 (431)
T 3ojo_A          246 VIEMANKHP  254 (431)
T ss_dssp             HHHHHTTST
T ss_pred             HHHHHccCC
Confidence            999998653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.92  E-value=2.3e-26  Score=215.22  Aligned_cols=173  Identities=10%  Similarity=0.057  Sum_probs=143.9

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+.+  +++|++++++|+++|+++.+.+.++.|.|.......                .++.+++|||||+|+
T Consensus       105 ~V~n~p~~n~~--aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~----------------~el~gktvGIIGlG~  166 (416)
T 3k5p_A          105 PVFNAPFSNTR--SVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGS----------------REVRGKTLGIVGYGN  166 (416)
T ss_dssp             CEECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTC----------------CCSTTCEEEEECCSH
T ss_pred             EEEeCCCcccH--HHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCC----------------ccCCCCEEEEEeeCH
Confidence            45556777777  889999999999999999999999999997543211                128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++||+++....    .+.....++++++++||+|++|+|.++++++++  +++.++.||+|+++
T Consensus       167 IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li--~~~~l~~mk~gail  240 (416)
T 3k5p_A          167 IGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLI--TEAKLRKMKKGAFL  240 (416)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCB--CHHHHHHSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhc--CHHHHhhCCCCcEE
Confidence            999999999999999999999764321    234556799999999999999999999999999  67889999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      ||++|+.+++++++.++|+++.+.....+++..+|..
T Consensus       241 IN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~  277 (416)
T 3k5p_A          241 INNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPAS  277 (416)
T ss_dssp             EECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSS
T ss_pred             EECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCC
Confidence            9999999999999999999998888888888877643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.92  E-value=2.9e-24  Score=197.17  Aligned_cols=263  Identities=16%  Similarity=0.124  Sum_probs=188.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC------------CCHHHHhh---cCCEEEEee
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------------PSPDEVAA---SCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------------~~~~~~~~---~aDivi~~~  135 (359)
                      +|+|+|||+|.||..+|..|.+.|++|++|+|++++.+.+.+.|....            .+.+++.+   ++|+|++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            378999999999999999999999999999999888777766554321            13344444   899999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCC--ccccCCceEEEe--
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSK--KPAEDGQLIFLA--  207 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~--  207 (359)
                      | +..+..++   +++.+.++++++||+++++.. ..+.+.+.+.+.    +..+++++..++.  .....+...+..  
T Consensus        83 ~-~~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~  157 (316)
T 2ew2_A           83 K-AQQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENID  157 (316)
T ss_dssp             C-HHHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESS
T ss_pred             c-cccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecC
Confidence            7 67888888   778888889999999987644 334555555433    2222233333322  112334444432  


Q ss_pred             cCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC
Q 018213          208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GSMMATFSEGLLHSEKVG  266 (359)
Q Consensus       208 ~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G  266 (359)
                      +++++..+.+.++|+.+|..++..++.....|.|++.|...                     ..+..++.|+..++++.|
T Consensus       158 ~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G  237 (316)
T 2ew2_A          158 PSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEA  237 (316)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcC
Confidence            34678889999999999999988888888999999998653                     345678999999999999


Q ss_pred             CCH--HHHHHHHhhccccchhhhhcccccccCCC-CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          267 LDP--NVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       267 i~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      +++  +.+.+.+..........++ .++|. .++ ..++..+ ..++++.++++++++|+++|+++.++++++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~  312 (316)
T 2ew2_A          238 IYLDQAEVYTHIVQTYDPNGIGLH-YPSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEEL  312 (316)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTTS-CCHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhccccCCCC-CcHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            986  4666666542211100111 12232 233 3344444 57889999999999999999999999999987654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.91  E-value=1.4e-26  Score=212.87  Aligned_cols=172  Identities=9%  Similarity=0.058  Sum_probs=146.6

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCC-CCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCC
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKP-INSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG   80 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G   80 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++ .|.|.+....  ..+             ++.+++|||||+|
T Consensus        95 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~--~~~-------------~l~gktvgIiGlG  157 (343)
T 2yq5_A           95 LVTNVPVYSPR--AIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNL--ISN-------------EIYNLTVGLIGVG  157 (343)
T ss_dssp             EEECCSCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGG--CBC-------------CGGGSEEEEECCS
T ss_pred             EEEECCCCCcH--HHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCC--Ccc-------------ccCCCeEEEEecC
Confidence            45556888887  8899999999999999999999998 8888642211  111             2778999999999


Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      .||+.+|++++.+|++|++|||+++..   .+.+.... ++++++++||+|++|+|.++++++++  +++.++.|++|++
T Consensus       158 ~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~-~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gai  231 (343)
T 2yq5_A          158 HIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTYT-DFDTVLKEADIVSLHTPLFPSTENMI--GEKQLKEMKKSAY  231 (343)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHhhCCCEEEEECCChhhh---hhcccccc-CHHHHHhcCCEEEEcCCCCHHHHHHh--hHHHHhhCCCCcE
Confidence            999999999999999999999987541   12234443 89999999999999999999999999  6788999999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +||++|+.++++++|.++|+++.+.....+++..++
T Consensus       232 lIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          232 LINCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             EEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            999999999999999999999988888888888776

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.91  E-value=9.4e-26  Score=205.51  Aligned_cols=174  Identities=13%  Similarity=0.084  Sum_probs=146.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|.......   +             ++.+++|||||+|+
T Consensus        91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~---~-------------~l~g~~vgIiG~G~  152 (307)
T 1wwk_A           91 EVVNAPAASSR--SVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMG---I-------------ELEGKTIGIIGFGR  152 (307)
T ss_dssp             EEECCGGGGHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCB---C-------------CCTTCEEEEECCSH
T ss_pred             EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCC---c-------------ccCCceEEEEccCH
Confidence            34555777776  889999999999999999999999999996311111   1             28889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.+..+|++|++|||++++ +...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       153 IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~l  228 (307)
T 1wwk_A          153 IGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLI--NEERLKLMKKTAIL  228 (307)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhc--CHHHHhcCCCCeEE
Confidence            9999999999999999999998865 44455677654 89999999999999999999999998  66788899999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++|+.+++++++.++++++.+.....++++.++.
T Consensus       229 in~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (307)
T 1wwk_A          229 INTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL  264 (307)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred             EECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            999999999999999999998877666667765543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.91  E-value=2.9e-26  Score=213.26  Aligned_cols=178  Identities=11%  Similarity=0.033  Sum_probs=151.9

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|.... ...             ...++.+++|||||+|+
T Consensus       111 ~V~n~pg~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-~~~-------------~~~~l~g~tvgIIG~G~  174 (364)
T 2j6i_A          111 SVLEVTGSNVV--SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAA-IAK-------------DAYDIEGKTIATIGAGR  174 (364)
T ss_dssp             EEEECTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHT-------------TCCCSTTCEEEEECCSH
T ss_pred             EEEECCCcCcH--HHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCc-ccC-------------CcccCCCCEEEEECcCH
Confidence            45556788776  889999999999999999999999999996210 000             01128889999999999


Q ss_pred             hhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           82 MGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        82 iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      ||+.+|+++..+|++ |++|||++...+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|+++++
T Consensus       175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~  252 (364)
T 2j6i_A          175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLI--NKELLSKFKKGAW  252 (364)
T ss_dssp             HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEE
T ss_pred             HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHh--CHHHHhhCCCCCE
Confidence            999999999999997 9999998766665556677766789999999999999999999999999  6778899999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      +||++|+.++++++|.++|+++++.....+++..++.
T Consensus       253 lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~  289 (364)
T 2j6i_A          253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPA  289 (364)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             EEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence            9999999999999999999999988888888887753

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.91  E-value=7e-26  Score=208.04  Aligned_cols=173  Identities=12%  Similarity=0.102  Sum_probs=146.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|.......                .++.+++|||||+|.
T Consensus       114 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~----------------~~l~g~tvgIIGlG~  175 (335)
T 2g76_A          114 LVMNTPNGNSL--SAAELTCGMIMCLARQIPQATASMKDGKWERKKFMG----------------TELNGKTLGILGLGR  175 (335)
T ss_dssp             EEECCSSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCB----------------CCCTTCEEEEECCSH
T ss_pred             EEEECCCccch--HHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCC----------------cCCCcCEEEEEeECH
Confidence            34455778776  889999999999999999999999999996321000                128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|++++.+|++|++|||+++. +...+.|+.. .++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       176 IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gail  251 (335)
T 2g76_A          176 IGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLL--NDNTFAQCKKGVRV  251 (335)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSB--CHHHHTTSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhh--CHHHHhhCCCCcEE
Confidence            9999999999999999999998765 3444567654 489999999999999999999999998  67788999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++++.+.....+++..+|
T Consensus       252 IN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP  286 (335)
T 2g76_A          252 VNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP  286 (335)
T ss_dssp             EECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             EECCCccccCHHHHHHHHHhCCccEEEEeecCCCC
Confidence            99999999999999999999888776677777665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.91  E-value=3.9e-26  Score=213.16  Aligned_cols=177  Identities=9%  Similarity=0.011  Sum_probs=147.9

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|.|...  +++|++++++|+++|++..+.+.++.|.|..... .      .       ...++.+++|||||+|+|
T Consensus       139 V~n~~g~~~~--~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~-~------~-------~~~~l~gktvGIIGlG~I  202 (393)
T 2nac_A          139 VAEVTYCNSI--SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADC-V------S-------HAYDLEAMHVGTVAAGRI  202 (393)
T ss_dssp             EEECTTTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHH-H------T-------TCCCCTTCEEEEECCSHH
T ss_pred             EEeCCCcccH--HHHHHHHHHHHHHHhccHHHHHHHHcCCCCcccc-c------c-------CCccCCCCEEEEEeECHH
Confidence            3334655444  8899999999999999999999999999962100 0      0       011288899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|+++..+|++|++|||++...+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|++++++|
T Consensus       203 G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gailI  280 (393)
T 2nac_A          203 GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIV  280 (393)
T ss_dssp             HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHh--hHHHHhhCCCCCEEE
Confidence            999999999999999999998766555555577766789999999999999999999999998  677889999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |++|+.+++++++.++++++.+.....+++..++.
T Consensus       281 N~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~  315 (393)
T 2nac_A          281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  315 (393)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             ECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence            99999999999999999998888777888876654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.91  E-value=1.5e-25  Score=205.27  Aligned_cols=177  Identities=12%  Similarity=0.071  Sum_probs=146.4

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|..+......             ..++.+++|||||+|+
T Consensus        92 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~-------------~~~l~g~~vgIIG~G~  156 (320)
T 1gdh_A           92 KVGNAPHGVTV--ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELV-------------GEKLDNKTLGIYGFGS  156 (320)
T ss_dssp             EEECCCCSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTC-------------BCCCTTCEEEEECCSH
T ss_pred             EEEEcCCCCHH--HHHHHHHHHHHHHHccHHHHHHHHHcCCCCcccccccc-------------CcCCCCCEEEEECcCH
Confidence            34455777766  88999999999999999999999999999632111110             1128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcC-CccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNR-TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~-~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      ||+.+|+++..+|++|++||| +++. ....+.|+....++++++++||+|++|+|.++++++++  +++.++.|+++++
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i--~~~~l~~mk~gai  233 (320)
T 1gdh_A          157 IGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAI  233 (320)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc--CHHHHhhCCCCcE
Confidence            999999999999999999999 8765 33444577766689999999999999999999999998  5667889999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +||++|+.+++++++.++++++.+.....+++..++
T Consensus       234 lIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP  269 (320)
T 1gdh_A          234 VVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  269 (320)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            999999999999999999999877766666765554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.91  E-value=5.3e-26  Score=213.80  Aligned_cols=170  Identities=12%  Similarity=0.031  Sum_probs=140.2

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|++.  +++|++++++|+++|+++.+.+.++.|.|.......                .++.+++|||||+|+|
T Consensus        95 V~n~p~~n~~--~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~----------------~el~gktlGiIGlG~I  156 (404)
T 1sc6_A           95 VFNAPFSNTR--SVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGS----------------FEARGKKLGIIGYGHI  156 (404)
T ss_dssp             EECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----C----------------CCSTTCEEEEECCSHH
T ss_pred             EEecCcccHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCc----------------cccCCCEEEEEeECHH
Confidence            4455777776  889999999999999999999999999996322111                1288899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|+++..+|++|++|||++....    .++....++++++++||+|++|+|.+++|++++  +++.++.||+|+++|
T Consensus       157 G~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~lI  230 (404)
T 1sc6_A          157 GTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLI  230 (404)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHh--hHHHHhhcCCCeEEE
Confidence            99999999999999999999765321    235566799999999999999999999999999  677889999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      |++|+.+++++++.++++++.+.....+++..+|
T Consensus       231 N~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP  264 (404)
T 1sc6_A          231 NASRGTVVDIPALADALASKHLAGAAIDVFPTEP  264 (404)
T ss_dssp             ECSCSSSBCHHHHHHHHHTTSEEEEEEEC-----
T ss_pred             ECCCChHHhHHHHHHHHHcCCccEEEEeecCCCC
Confidence            9999999999999999999887766667776654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.90  E-value=1.5e-25  Score=206.45  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=146.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|.+.....   +             ++.+++|||||+|+
T Consensus        95 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~---~-------------~l~g~~vgIiG~G~  156 (333)
T 1j4a_A           95 QITNVPVYSPN--AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG---R-------------EVRDQVVGVVGTGH  156 (333)
T ss_dssp             EEECCCCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCB---C-------------CGGGSEEEEECCSH
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCccc---c-------------cCCCCEEEEEccCH
Confidence            34555788877  889999999999999999999999999996322111   1             17779999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++++.  +.+ .+....++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~l  231 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVI  231 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHH--hHHHHhhCCCCcEE
Confidence            99999999999999999999987643  222 34555589999999999999999999999998  66788899999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++++++.....+++..++
T Consensus       232 In~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  266 (333)
T 1j4a_A          232 VNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV  266 (333)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCT
T ss_pred             EECCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Confidence            99999999999999999999999888888888776

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.90  E-value=1.2e-25  Score=207.37  Aligned_cols=181  Identities=12%  Similarity=0.045  Sum_probs=148.4

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.|.......   +...      ....++.+++|||||+|+
T Consensus       110 ~V~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~---~~~~------~~~~~l~g~tvGIIG~G~  178 (347)
T 1mx3_A          110 AVCNVPAASVE--ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQI---REVA------SGAARIRGETLGIIGLGR  178 (347)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHH---HHHT------TTCCCCTTCEEEEECCSH
T ss_pred             eEEECCCCCHH--HHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccc---cccc------cCccCCCCCEEEEEeECH
Confidence            45556888876  889999999999999999999999999996321000   0000      000128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++++. .....|+..+.++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       179 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gail  255 (347)
T 1mx3_A          179 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQGAFL  255 (347)
T ss_dssp             HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHh--HHHHHhcCCCCCEE
Confidence            99999999999999999999987542 2334477666789999999999999999999999998  67788999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++++++.....+++..++
T Consensus       256 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  290 (347)
T 1mx3_A          256 VNTARGGLVDEKALAQALKEGRIRGAALDVHESEP  290 (347)
T ss_dssp             EECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             EECCCChHHhHHHHHHHHHhCCCcEEEEeecccCC
Confidence            99999999999999999999988877777776665

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.90  E-value=4.2e-25  Score=200.57  Aligned_cols=164  Identities=13%  Similarity=0.109  Sum_probs=140.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+..+|++...  +++|++++++|+++|++..+.+.++.|.|......    +             ++.+++|||||+|+
T Consensus        74 ~v~~~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~----~-------------~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           74 TVAGNAGSNAD--AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEI----P-------------LIQGEKVAVLGLGE  134 (303)
T ss_dssp             CEECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCC----C-------------CCTTCEEEEESCST
T ss_pred             EEEECCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCC----C-------------CCCCCEEEEEccCH
Confidence            34556766665  89999999999999999999999999999632110    1             17889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||+++  +.    +.....++++++++||+|++|+|.++++++++  +++.++.|++|+++
T Consensus       135 IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i--~~~~l~~mk~gail  206 (303)
T 1qp8_A          135 IGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVF  206 (303)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHh--CHHHHhhCCCCCEE
Confidence            999999999999999999999876  21    34445689999999999999999999999999  56788999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                      ||++|+.+++++++.++++++.+.....+++
T Consensus       207 in~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          207 VNVGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             EECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             EECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            9999999999999999999988877777777

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.90  E-value=3e-25  Score=202.70  Aligned_cols=171  Identities=14%  Similarity=0.053  Sum_probs=146.3

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|....  .   +.             +.+++|||||+|+
T Consensus        93 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~---~~-------------l~g~~vgIIG~G~  152 (313)
T 2ekl_A           93 KVVYAPGASTD--SAVELTIGLMIAAARKMYTSMALAKSGIFKKIE--G---LE-------------LAGKTIGIVGFGR  152 (313)
T ss_dssp             EEECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCC--C---CC-------------CTTCEEEEESCSH
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC--C---CC-------------CCCCEEEEEeeCH
Confidence            34556777766  889999999999999999999999999996111  1   11             7889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.+..+|++|++|||++++. ...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       153 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~-~l~ell~~aDvVvl~~P~~~~t~~li--~~~~l~~mk~ga~l  228 (313)
T 2ekl_A          153 IGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPII--DYPQFELMKDNVII  228 (313)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEEC-CHHHHHHHCSEEEECCCCCTTSCCSB--CHHHHHHSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCceec-CHHHHHhhCCEEEEeccCChHHHHhh--CHHHHhcCCCCCEE
Confidence            99999999999999999999988653 3455677654 89999999999999999999999988  66778899999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++++++.....+++..+|
T Consensus       229 In~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP  263 (313)
T 2ekl_A          229 VNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP  263 (313)
T ss_dssp             EESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSS
T ss_pred             EECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            99999999999999999999888777777887765

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.90  E-value=3.1e-25  Score=204.22  Aligned_cols=173  Identities=14%  Similarity=0.075  Sum_probs=146.1

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|++.  +++|++++++|+++|+++.+.+.++.|.|.+....  ..+             ++.+++|||||+|.
T Consensus        94 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~--~~~-------------~l~g~~vgIiG~G~  156 (331)
T 1xdw_A           94 PMAFVPRYSPN--AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM--FSK-------------EVRNCTVGVVGLGR  156 (331)
T ss_dssp             CEECCCCCCHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTT--CCC-------------CGGGSEEEEECCSH
T ss_pred             EEEeCCCCCcH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCc--Ccc-------------CCCCCEEEEECcCH
Confidence            34556788877  78999999999999999999999999999631111  001             17779999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||+++..  + +..+. ..++++++++||+|++|+|.++++++++  +++.++.|++|+++
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li--~~~~l~~mk~ga~l  230 (331)
T 1xdw_A          157 IGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVV--TRDFLKKMKDGAIL  230 (331)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSB--CHHHHHTSCTTEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHh--CHHHHhhCCCCcEE
Confidence            99999999999999999999987653  1 22233 3489999999999999999999999998  67788999999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      ||++|+.+++++++.++++++++.....+++..++.
T Consensus       231 in~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  266 (331)
T 1xdw_A          231 VNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEAS  266 (331)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGG
T ss_pred             EECCCcccccHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            999999999999999999999998888899887763

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.90  E-value=6.5e-25  Score=202.31  Aligned_cols=177  Identities=13%  Similarity=0.162  Sum_probs=146.0

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|++..+.+.++.+.|..+......             ..++.+++|||||+|.
T Consensus       101 ~v~n~~~~~~~--~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~-------------~~~l~g~~vgIIG~G~  165 (330)
T 2gcg_A          101 RVGYTPDVLTD--TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLC-------------GYGLTQSTVGIIGLGR  165 (330)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSC-------------BCCCTTCEEEEECCSH
T ss_pred             eEEeCCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccc-------------CcCCCCCEEEEECcCH
Confidence            34555777666  88999999999999999999999999999642211110             1127889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.+..+|++|++|||++++.+...+.|+... ++++++++||+|++|+|.+.++++++  +++.++.|++++++
T Consensus       166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i--~~~~~~~mk~gail  242 (330)
T 2gcg_A          166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLC--NKDFFQKMKETAVF  242 (330)
T ss_dssp             HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhh--CHHHHhcCCCCcEE
Confidence            9999999999999999999998876665555577666 89999999999999999988999988  56778889999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++++.+++++++.++++++++.....+++..++
T Consensus       243 In~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep  277 (330)
T 2gcg_A          243 INISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP  277 (330)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             EECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            99999999999999999998877665566665554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.90  E-value=5.3e-23  Score=184.10  Aligned_cols=248  Identities=12%  Similarity=0.110  Sum_probs=180.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |+|+|||+|.||..++..|.+.| ++|.+|||++++.+.+.+. |+....+.++++ ++|+|++++| +..++.++   .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~   75 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K   75 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence            57999999999999999999999 9999999998888877664 887777888888 9999999998 88999998   6


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~lg~~  227 (359)
                      ++.+  + +++|++++++...  +.+.+.+.. +.+++.+ +.+.+.....+...++.++  +++.++.+.++|+.+|..
T Consensus        76 ~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~  148 (263)
T 1yqg_A           76 NIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT  148 (263)
T ss_dssp             TCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred             Hhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence            6654  5 8999998555443  456665543 4566665 4444444444555556666  788999999999999987


Q ss_pred             eEEeC-ccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhhcc--c-ccccCCCCC
Q 018213          228 RFYLG-DVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLKG--P-SMIESLYPT  300 (359)
Q Consensus       228 ~~~~g-~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~--~-~~~~~~~~~  300 (359)
                      + +++ +........+.  .+.+...++..+.|+   +++.|++++++.+++..+...++ ++....  + .+....+.+
T Consensus       149 ~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (263)
T 1yqg_A          149 V-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSK  224 (263)
T ss_dssp             E-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCT
T ss_pred             E-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence            6 666 42111111111  123334444455555   68899999999999877654444 444333  3 345566778


Q ss_pred             CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          301 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       301 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      ++++....+++       ++.|++.|+.+++.+.++++.+.|
T Consensus       225 ~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~  259 (263)
T 1yqg_A          225 GGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME  259 (263)
T ss_dssp             TSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence            88777765544       779999999999999999998765

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.90  E-value=8.5e-25  Score=199.39  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=140.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|..+......             ..++.+++|||||+|+
T Consensus        90 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~-------------~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           90 RVTHTPGVLTE--ATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLL-------------GLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTC-------------BCCCTTCEEEEECCSH
T ss_pred             EEEECCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCCCCcccccccc-------------CcCCCCCEEEEEEECH
Confidence            34556777776  88999999999999999999999999999632111110             0127889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+++..+|++|++|||++++..      + ...++++++++||+|++|+|.++++++++  +++.++.|++++++
T Consensus       155 IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~l  225 (311)
T 2cuk_A          155 IGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLL--NRERLFAMKRGAIL  225 (311)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHTTSCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhc--CHHHHhhCCCCcEE
Confidence            999999999999999999999876543      2 24589999999999999999998999998  55778899999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++ +.+.....++++.++
T Consensus       226 in~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP  259 (311)
T 2cuk_A          226 LNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP  259 (311)
T ss_dssp             EECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred             EECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence            9999999999999999998 777665666666554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.90  E-value=1.8e-25  Score=205.75  Aligned_cols=171  Identities=13%  Similarity=0.082  Sum_probs=144.8

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCC-CCCCccccccccccccCCcccccCCCCeEEEEcCC
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPT-KPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG   80 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G   80 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.|.|.+ .....   +             ++.+++|||||+|
T Consensus        93 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~---~-------------~l~g~~vgIiG~G  154 (333)
T 1dxy_A           93 RLSNVPAYSPA--AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIG---K-------------ELGQQTVGVMGTG  154 (333)
T ss_dssp             EEECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCC---C-------------CGGGSEEEEECCS
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCc---c-------------CCCCCEEEEECcC
Confidence            34555888876  8899999999999999999999999999842 11111   1             1778999999999


Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      +||+.+|+++..+|++|++|||+++..  . +..+. ..++++++++||+|++|+|.++++++++  +++.++.|++|++
T Consensus       155 ~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li--~~~~l~~mk~ga~  228 (333)
T 1dxy_A          155 HIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAI  228 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHh--CHHHHhhCCCCcE
Confidence            999999999999999999999987643  1 12233 3489999999999999999999999998  6778899999999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +||++|+.+++++++.++++++++.....+++..++
T Consensus       229 lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          229 VINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             EEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             EEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            999999999999999999999998888888887765

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.90  E-value=4.7e-25  Score=202.53  Aligned_cols=171  Identities=12%  Similarity=0.132  Sum_probs=144.5

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|++..+.+.++.|.|.... .... +             ++.+++|||||+|+
T Consensus       112 ~v~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~-~-------------~l~g~~vgIIG~G~  174 (333)
T 3ba1_A          112 RVTNTPDVLTD--DVADLAIGLILAVLRRICECDKYVRRGAWKFGD-FKLT-T-------------KFSGKRVGIIGLGR  174 (333)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCC-CCCC-C-------------CCTTCCEEEECCSH
T ss_pred             EEEECCCcchH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccc-cccc-c-------------ccCCCEEEEECCCH
Confidence            45556778776  889999999999999999999999999996311 1111 1             27889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.+..+|++|++|||+++...     |.....++++++++||+|++++|.++++++++  +++.++.|++++++
T Consensus       175 iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li--~~~~l~~mk~gail  247 (333)
T 3ba1_A          175 IGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHII--NREVIDALGPKGVL  247 (333)
T ss_dssp             HHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHHCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHh--hHHHHhcCCCCCEE
Confidence            999999999999999999999876532     55556789999999999999999988999998  56778899999999


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++|+.+++++++.++++++++.....+++..++
T Consensus       248 In~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP  282 (333)
T 3ba1_A          248 INIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP  282 (333)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTT
T ss_pred             EECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCC
Confidence            99999999999999999999888777777776555

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.89  E-value=1.9e-23  Score=189.51  Aligned_cols=253  Identities=17%  Similarity=0.132  Sum_probs=176.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC---C----c-cCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---A----K-YQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---~----~-~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      |+|+|||+|.||..+|..|.+.|++|++|+|++++.+.+...+   .    . ..++ .+.++++|+|++++| +.++..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~-~~~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLK-AWQVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSC-GGGHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEec-HHhHHH
Confidence            5799999999999999999999999999999987665443322   1    0 1233 466789999999997 567888


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCeeecCCCCCC-CccccCCceEEEe-cCCHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGS-KKPAEDGQLIFLA-AGDKSLYNTVAP  219 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g~~~~~~~v~~  219 (359)
                      ++   +++.+.+++++++|+++++. ...+.+.+.+.+  .+..+.++...++ ......+...+.. +++++.++.+.+
T Consensus        79 v~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~  154 (291)
T 1ks9_A           79 AV---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLAD  154 (291)
T ss_dssp             HH---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHH
T ss_pred             HH---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHHH
Confidence            88   77888888999999987654 222234443332  1222111112222 2223345544433 345677889999


Q ss_pred             HHHHhCCCeEEeCccChHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHHH----HH
Q 018213          220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIM------------------GSMMATFSEGLLHSEKVGLDP--NVLV----EV  275 (359)
Q Consensus       220 ll~~lg~~~~~~g~~~~~~~~kl~~n~~~------------------~~~~~~~~Ea~~l~~~~Gi~~--~~~~----~~  275 (359)
                      +|+.+|..+++.++.+...|.|++.|..+                  ..+..++.|+..++++.|+++  +.+.    ++
T Consensus       155 ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~  234 (291)
T 1ks9_A          155 ILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQV  234 (291)
T ss_dssp             HHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999888999999999988                  577789999999999999986  4542    33


Q ss_pred             Hhhc-cccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213          276 VSQG-AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  340 (359)
Q Consensus       276 ~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  340 (359)
                      +..+ ...+.+++.    +..+...   .++   .+.+.++++++++|+|+|+++.++++++....
T Consensus       235 ~~~~~~~~ssm~~d----~~~g~~~---e~~---~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e~  290 (291)
T 1ks9_A          235 IDATAENISSMLQD----IRALRHT---EID---YINGFLLRRARAHGIAVPENTRLFEMVKRKES  290 (291)
T ss_dssp             HHHTTTCCCHHHHH----HHTTCCC---SGG---GTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCChHHHH----HHcCCcc---HHH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            3322 222333321    1111111   222   34788999999999999999999999987643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.89  E-value=7.4e-22  Score=176.27  Aligned_cols=247  Identities=13%  Similarity=0.181  Sum_probs=182.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      +|+|+|||+|.||+.+++.|...|++|.+|||++++.+.+.+. |+..+.+++++++++|+|++|+| +..+..++   .
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~---~   78 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---K   78 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH---T
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHH---H
Confidence            3789999999999999999999999999999998887777654 78878899999999999999998 77788877   4


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~lg~~  227 (359)
                      +    +++++++|+++.+....  .+.+.+. .+..++. ++.+.+.....+...++.++  +++.++.++++|+.+| .
T Consensus        79 ~----l~~~~~vv~~~~~~~~~--~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~  149 (259)
T 2ahr_A           79 P----LHFKQPIISMAAGISLQ--RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-S  149 (259)
T ss_dssp             T----SCCCSCEEECCTTCCHH--HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-E
T ss_pred             H----hccCCEEEEeCCCCCHH--HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-C
Confidence            3    34788999986554432  4555553 3445554 33333333444555555555  8889999999999999 5


Q ss_pred             eEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhhcc--ccccc-CCCCCC
Q 018213          228 RFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLKG--PSMIE-SLYPTA  301 (359)
Q Consensus       228 ~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~--~~~~~-~~~~~~  301 (359)
                      ++++++.......++.  .+.+...+..++.|+   +.+.|++++++.+++..+...++ +.....  +.+.. ..+.|+
T Consensus       150 ~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~  226 (259)
T 2ahr_A          150 TFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPG  226 (259)
T ss_dssp             EEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTT
T ss_pred             EEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCC
Confidence            7888887666666654  244444455555555   58899999999999988766655 444333  55553 345788


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213          302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  340 (359)
Q Consensus       302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~  340 (359)
                      +++..+.||+       ++.|++..+.+++.+.++++.+
T Consensus       227 ~~~~~~~~~l-------~~~g~~~~~~~a~~~~~~r~~~  258 (259)
T 2ahr_A          227 GTTIAGLMEL-------ERLGLTATVSSAIDKTIDKAKS  258 (259)
T ss_dssp             SHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH-------HHCChHHHHHHHHHHHHHHHhc
Confidence            8888877765       4678889999999998888764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.89  E-value=7.3e-25  Score=203.05  Aligned_cols=179  Identities=12%  Similarity=0.103  Sum_probs=147.5

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCC---CCCCCCCccccccccccccCCcccccCCCCeEEEEc
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINS---LPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLG   78 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG   78 (359)
                      .+...|+|+..  +++|++++++|+++|++..+.+.++.|.   |.... ..    ...       ...++.+++|||||
T Consensus       105 ~v~n~p~~~~~--~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~-~~----~~~-------~~~~l~g~~vgIIG  170 (348)
T 2w2k_A          105 AFANSRGAGDT--ATSDLALYLILSVFRLASYSERAARTGDPETFNRVH-LE----IGK-------SAHNPRGHVLGAVG  170 (348)
T ss_dssp             EEECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHH-HH----HHT-------TCCCSTTCEEEEEC
T ss_pred             EEEECCCCCcH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccc-cc----ccc-------cCcCCCCCEEEEEE
Confidence            34555778766  8899999999999999999999999999   83100 00    000       01128889999999


Q ss_pred             CChhhHHHHHHHH-HCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCC
Q 018213           79 MGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP  157 (359)
Q Consensus        79 ~G~iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~  157 (359)
                      +|+||+.+|+.+. .+|++|++|||+++..+...+.|+....++++++++||+|++|+|.+.++++++  +++.++.|++
T Consensus       171 ~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li--~~~~l~~mk~  248 (348)
T 2w2k_A          171 LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI--DEAFFAAMKP  248 (348)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB--CHHHHHHSCT
T ss_pred             ECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh--hHHHHhcCCC
Confidence            9999999999999 999999999998876555555577766689999999999999999999999998  5677889999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ++++||++|+.+++++++.++++++.+.....++++.++
T Consensus       249 gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP  287 (348)
T 2w2k_A          249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP  287 (348)
T ss_dssp             TEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT
T ss_pred             CCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC
Confidence            999999999999999999999998777777778877654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.89  E-value=1.7e-22  Score=187.15  Aligned_cols=266  Identities=14%  Similarity=0.114  Sum_probs=178.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC-----------CccCCCHHHHhhcCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----------AKYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----------~~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      .+||+|||+|+||.++|..|.+.|++|++|+|++++.+.+.+.|           +..+.++++ ++.+|+||+++| +.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence            48899999999999999999999999999999988888777665           355677888 889999999997 78


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhc-C--CeeecCCCCCCCccccCCc-eEEEecCCHHHH
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-G--ASFLEAPVSGSKKPAEDGQ-LIFLAAGDKSLY  214 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~  214 (359)
                      +++.++   +++.+   +++++|+++++ .+...+.+.+.+.+. +  ..+...|....+.  ..+. ..+..+++.  .
T Consensus        92 ~~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~--~~g~~~~~~~g~~~--~  161 (335)
T 1z82_A           92 YIREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEV--AKKLPTAVTLAGEN--S  161 (335)
T ss_dssp             GHHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHH--HTTCCEEEEEEETT--H
T ss_pred             HHHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHH--hCCCceEEEEEehh--H
Confidence            999998   55544   78999999876 333333444444332 1  2233344332211  1232 223333333  7


Q ss_pred             HHHHHHHHHhCCCeEEeCccChHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVN-----------------MIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n-----------------~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +.+.++|+..|.+++..++.-...|.|++.|                 .+...+..++.|+..++++.|++++++.++..
T Consensus       162 ~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~  241 (335)
T 1z82_A          162 KELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAG  241 (335)
T ss_dssp             HHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTT
T ss_pred             HHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhccccc
Confidence            8899999999988888877544556554444                 34455678999999999999999988755321


Q ss_pred             hc----cccchhhhhc--ccccccCCC-C----CCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCc
Q 018213          278 QG----AISAPMYSLK--GPSMIESLY-P----TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE  346 (359)
Q Consensus       278 ~~----~~~s~~~~~~--~~~~~~~~~-~----~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~  346 (359)
                      .+    ...++..+++  .+.+..+.. .    ..++..++.+|++.++++++++|+++|++++++++++       .+.
T Consensus       242 ~~~~~~t~~s~~~~n~~~~~~~~~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~  314 (335)
T 1z82_A          242 IGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGK  314 (335)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCC
T ss_pred             ccceeeeccCccCcHHHHHHHHhCCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCC
Confidence            10    0112222211  111222110 0    0122335679999999999999999999999998874       345


Q ss_pred             cHHHHHHHH
Q 018213          347 DFSAVIEAL  355 (359)
Q Consensus       347 d~~~~~~~~  355 (359)
                      +...+++.|
T Consensus       315 ~~~~~~~~l  323 (335)
T 1z82_A          315 PPLQSMRDL  323 (335)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            555555554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.89  E-value=2.7e-22  Score=184.62  Aligned_cols=259  Identities=16%  Similarity=0.159  Sum_probs=179.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCcc--chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      ++.|+|+|||+|+||..+|..|.+.|    ++|++|+|+++  +.+.+.+.|+....+..++++++|+||+|+| +..+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            55689999999999999999999999    89999999986  6677777788888889999999999999997 88999


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeec-CCCCCCCccccCCceEEEecCC---HHHHHH
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQLIFLAAGD---KSLYNT  216 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~g~---~~~~~~  216 (359)
                      .++   +++.+.++++++||+++++.+.  ..+.+.+.+.  +..++. .|..+.  ....+. .++++++   ++.++.
T Consensus        99 ~vl---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p~~p~--~~~~g~-~v~~~g~~~~~~~~~~  170 (322)
T 2izz_A           99 FIL---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMTNTPV--VVREGA-TVYATGTHAQVEDGRL  170 (322)
T ss_dssp             HHH---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEECCGGG--GGTCEE-EEEEECTTCCHHHHHH
T ss_pred             HHH---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeCCcHH--HHcCCe-EEEEeCCCCCHHHHHH
Confidence            998   7777788889999999876553  3466666542  334544 332221  222233 4455554   788999


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhhc--cc
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLK--GP  291 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~--~~  291 (359)
                      ++++|+.+|..++ +.+........+.  .+.+.+.++.++.|+   +.+.|++++.+.+++..+...++ +....  .|
T Consensus       171 v~~ll~~~G~~~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p  246 (322)
T 2izz_A          171 MEQLLSSVGFCTE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHP  246 (322)
T ss_dssp             HHHHHHTTEEEEE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHhCCCEEE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            9999999998654 4432223333332  233444444444444   47889999999999988755544 22211  23


Q ss_pred             ccccCC-CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCcc
Q 018213          292 SMIESL-YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED  347 (359)
Q Consensus       292 ~~~~~~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d  347 (359)
                      .++.+. +.+++++..       .++.+++.|++.++.+++.+.++++.+.|.+...
T Consensus       247 ~~l~~~v~sp~g~t~~-------~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~  296 (322)
T 2izz_A          247 GQLKDNVSSPGGATIH-------ALHVLESGGFRSLLINAVEASCIRTRELQSMADQ  296 (322)
T ss_dssp             HHHHHHHCCTTSHHHH-------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHhCCCCCcHHHH-------HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            333332 355554433       3456788999999999999999999987655433

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.88  E-value=2e-24  Score=199.31  Aligned_cols=176  Identities=10%  Similarity=0.044  Sum_probs=144.4

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCC----CCCCCccccccccccccCCcccccCCCCeEEEE
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLP----TKPLFPLSFKVFSSQATGVSAEADELPGRIGFL   77 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igii   77 (359)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.++.+.|.    .+......             ..++.+++||||
T Consensus        92 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~-------------~~~l~g~~vgII  156 (334)
T 2dbq_A           92 YVTNTPDVLTD--ATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFL-------------GYDVYGKTIGII  156 (334)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTC-------------CCCCTTCEEEEE
T ss_pred             EEEeCCCcCHH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccccccccccc-------------ccCCCCCEEEEE
Confidence            34455777766  889999999999999999999999999995    11111100             112788999999


Q ss_pred             cCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCC
Q 018213           78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP  157 (359)
Q Consensus        78 G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~  157 (359)
                      |+|.||+.+|+.++.+|++|++|||+++. +...+.|+.. .++++++++||+|++|+|.+.++++++  +++.++.|++
T Consensus       157 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i--~~~~~~~mk~  232 (334)
T 2dbq_A          157 GLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLI--NEERLKLMKK  232 (334)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCT
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhh--CHHHHhcCCC
Confidence            99999999999999999999999998876 4444456655 489999999999999999998899988  4577888999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ++++||++++.+.+++++.++++++.+.....++++.++
T Consensus       233 ~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP  271 (334)
T 2dbq_A          233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP  271 (334)
T ss_dssp             TCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             CcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC
Confidence            999999999999999999999998877776667776654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.88  E-value=6.7e-22  Score=183.12  Aligned_cols=272  Identities=11%  Similarity=0.045  Sum_probs=184.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcC--CccchhHHHhCCC-----------ccCC--CHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGA-----------KYQP--SPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~~~~~~~~aDivi~~~p  136 (359)
                      |+|+|||+|.||..+|..|.+.|++|++|+|  ++++.+.+.+.+.           ....  ++.++++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            5799999999999999999999999999999  8887777776653           3344  67778889999999997


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCC----hHHHHHHHHHHHhc-CC----eeecCCCCCCCccccCCceEEEe
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD----GDTSKLINGHIKAT-GA----SFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~----~~~~~~l~~~l~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                       +..+..++   +++.+ ++++++||+++++.    +...+.+.+.+.+. +.    .+...|.............+++.
T Consensus        81 -~~~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~  155 (335)
T 1txg_A           81 -TDGVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS  155 (335)
T ss_dssp             -GGGHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             -hHHHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEE
Confidence             66888888   77778 88899999998664    23344566666542 22    11122221110000111234445


Q ss_pred             cCCHHHHHHHHHHHHHhCCCeEEeCccChHHHH-----------------HHH-----HHHHHHHHHHHHHHHHHHHHHc
Q 018213          208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM-----------------KLV-----VNMIMGSMMATFSEGLLHSEKV  265 (359)
Q Consensus       208 ~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~-----------------kl~-----~n~~~~~~~~~~~Ea~~l~~~~  265 (359)
                      +.+++..+.+.++|+..|.+++..++.....|.                 |+.     .|.....+..++.|+..++++.
T Consensus       156 ~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~  235 (335)
T 1txg_A          156 SPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEIL  235 (335)
T ss_dssp             CSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            557888999999999999888888886656675                 444     5555666778999999999999


Q ss_pred             CCCHHHHH------HHHhhccccchhhhhcccccccCCCCCCc----------chhHHHHHHHHHHHHHHhcCCCchHHH
Q 018213          266 GLDPNVLV------EVVSQGAISAPMYSLKGPSMIESLYPTAF----------PLKHQQKDLRLALGLAESVSQSTPIAA  329 (359)
Q Consensus       266 Gi~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----------~~~~~~kd~~~~~~~a~~~g~~~p~~~  329 (359)
                      |++++++.      +.+..... +... .....+. ..+....          ...+..+|.+.++++++++|+++|+++
T Consensus       236 G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~~  312 (335)
T 1txg_A          236 GGDRETAFGLSGFGDLIATFRG-GRNG-MLGELLG-KGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLD  312 (335)
T ss_dssp             TSCGGGGGSTTTHHHHHHTTTC-HHHH-HHHHHHH-TTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             CCCcchhhcccchhheeecccc-CccH-HHHHHHh-CCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHHH
Confidence            99987654      44433221 1110 0000010 0111000          123456899999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          330 AANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       330 ~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      +++++++.       ..+...+++.|-..
T Consensus       313 ~~~~~~~~-------~~~~~~~~~~l~~~  334 (335)
T 1txg_A          313 SIYRVLYE-------GLKVEEVLFELATF  334 (335)
T ss_dssp             HHHHHHHS-------CCCHHHHHHHHHTT
T ss_pred             HHHHHHhC-------CCCHHHHHHHHHcC
Confidence            99988753       23566666655443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.88  E-value=1.6e-23  Score=204.55  Aligned_cols=203  Identities=13%  Similarity=0.118  Sum_probs=156.5

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|+..  +++|++++++|+++|+++.+.+.++.|.|......                ..++.+++|||||+|.|
T Consensus        92 v~n~p~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~----------------~~~l~g~~vgIIG~G~I  153 (529)
T 1ygy_A           92 VVNAPTSNIH--SAAEHALALLLAASRQIPAADASLREHTWKRSSFS----------------GTEIFGKTVGVVGLGRI  153 (529)
T ss_dssp             EECCTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCC----------------BCCCTTCEEEEECCSHH
T ss_pred             EEECCCcchH--HHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcC----------------ccccCCCEEEEEeeCHH
Confidence            4445677666  88999999999999999999999999999632110                01278899999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                      |+.+|++|..+|++|++||+++. .+...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++++++|
T Consensus       154 G~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i--~~~~~~~~k~g~ili  229 (529)
T 1ygy_A          154 GQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVIIV  229 (529)
T ss_dssp             HHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHh--CHHHHhCCCCCCEEE
Confidence            99999999999999999999874 334455577665 89999999999999999888999998  455788999999999


Q ss_pred             eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc----ccCCceEEEec----CCHHHHHH-----HHHHHHHhCCC
Q 018213          163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP----AEDGQLIFLAA----GDKSLYNT-----VAPLLDIMGKS  227 (359)
Q Consensus       163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----g~~~~~~~-----v~~ll~~lg~~  227 (359)
                      |++++.+.++.++.++++++.+.....++++.+|.    ....+.+++..    .+.++.++     ++++.+.++..
T Consensus       230 n~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~  307 (529)
T 1ygy_A          230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE  307 (529)
T ss_dssp             ECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999887666555555555543    22223334432    24555554     55566655543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.88  E-value=4.4e-23  Score=189.58  Aligned_cols=254  Identities=13%  Similarity=0.108  Sum_probs=172.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC-----C-CcEEEEcCCccchhHHHh-CCCccCC-------------CHHHHhhcCCE
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA-----G-CDVTVWNRTKSKCDPLIS-LGAKYQP-------------SPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~-----g-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~~~~~~~~aDi  130 (359)
                      +|+|+|||+|.||..+|..|.+.     | ++|++|+| +++.+.+.+ .|+....             +..+.+..+|+
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   86 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDY   86 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCE
Confidence            37899999999999999999998     9 99999999 777777777 6654432             33355678999


Q ss_pred             EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCc--cccCCceE
Q 018213          131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKK--PAEDGQLI  204 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~--~~~~~~~~  204 (359)
                      ||+++| +.++..++   +++.+.++++++||+++.+. ...+.+.+.+.+    .+..++++++.++-.  ....+...
T Consensus        87 vil~vk-~~~~~~v~---~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~  161 (317)
T 2qyt_A           87 ILFCTK-DYDMERGV---AEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELF  161 (317)
T ss_dssp             EEECCS-SSCHHHHH---HHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEecC-cccHHHHH---HHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceE
Confidence            999997 56678888   77777788889999987764 333455555543    233344455443211  11223333


Q ss_pred             EEec----CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Q 018213          205 FLAA----GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-------------------MMATFSEGLLH  261 (359)
Q Consensus       205 ~~~~----g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~-------------------~~~~~~Ea~~l  261 (359)
                      ++.+    ++.+.. .+.++|+..|..+++.++.....|.|++.|...+.                   +..++.|+..+
T Consensus       162 ~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v  240 (317)
T 2qyt_A          162 YFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAEL  240 (317)
T ss_dssp             EEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2321    246666 89999999999998889999999999999987654                   34889999999


Q ss_pred             HHHcCCCHH--HHHHHHhhccccchhhhhcccccccCCCCCCcc--hhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018213          262 SEKVGLDPN--VLVEVVSQGAISAPMYSLKGPSMIESLYPTAFP--LKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  337 (359)
Q Consensus       262 ~~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  337 (359)
                      +++.|++++  .+.+.+....   +......++|.+ ++..++.  ++..   ++.++++++++|+++|+++.++++++.
T Consensus       241 ~~a~G~~~~~~~~~~~~~~~~---~~~~~~~~sm~~-d~~~g~~~E~~~~---~g~~~~~a~~~gv~~P~~~~~~~~~~~  313 (317)
T 2qyt_A          241 FRAKYGQVPDDVVQQLLDKQR---KMPPESTSSMHS-DFLQGGSTEVETL---TGYVVREAEALRVDLPMYKRMYRELVS  313 (317)
T ss_dssp             HHHHTSCCCSSHHHHHHHHHH---HC---------------------CTT---THHHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred             HHHcCCCCChHHHHHHHHHHh---ccCCCCCChHHH-HHHcCCccCHHHH---hhHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999863  5666655421   111112233443 4444432  3332   788999999999999999999988754


Q ss_pred             H
Q 018213          338 A  338 (359)
Q Consensus       338 a  338 (359)
                      .
T Consensus       314 ~  314 (317)
T 2qyt_A          314 R  314 (317)
T ss_dssp             -
T ss_pred             H
Confidence            3

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.88  E-value=9e-23  Score=191.32  Aligned_cols=261  Identities=13%  Similarity=0.085  Sum_probs=177.3

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC--------------CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +|+|||+|.||..+|..|.+.|++|++|+|++++.+.+.+.+              +....+++++++++|+||+++| +
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~-~   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP-T   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCC-H
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCC-h
Confidence            899999999999999999999999999999988777766532              3445678888899999999997 6


Q ss_pred             hHHHHHhccccc----ccccCCC-CCEEEeccCCC-hHHHHHHHHHHHhc-C---CeeecCCCCCCCccccCCceEEEec
Q 018213          139 ESAMDVACGKHG----AASGMGP-GKGYVDVSTVD-GDTSKLINGHIKAT-G---ASFLEAPVSGSKKPAEDGQLIFLAA  208 (359)
Q Consensus       139 ~~~~~~~~~~~~----~~~~l~~-~~~vi~~s~~~-~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~  208 (359)
                      ..++.++   .+    +.+.+++ +++||+++++. +...+.+.+.+.+. +   ..++..|.+...........+++.+
T Consensus        96 ~~~~~v~---~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~  172 (366)
T 1evy_A           96 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS  172 (366)
T ss_dssp             HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHH---HHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEec
Confidence            7888888   55    7677778 89999998653 32223334444332 2   2233344332211112223444556


Q ss_pred             CCHHHHHHHHHHHHHh--CCCeEEeCccChHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCCCH
Q 018213          209 GDKSLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVV-----------------NMIMGSMMATFSEGLLHSEKVGLDP  269 (359)
Q Consensus       209 g~~~~~~~v~~ll~~l--g~~~~~~g~~~~~~~~kl~~-----------------n~~~~~~~~~~~Ea~~l~~~~Gi~~  269 (359)
                      ++++..+.+.++|+..  +.+++..++.....|.|++.                 |.+...+..++.|+..++++.|+++
T Consensus       173 ~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~  252 (366)
T 1evy_A          173 ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDG  252 (366)
T ss_dssp             SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            6888899999999999  88887778754456665543                 4455667789999999999999998


Q ss_pred             HHHHHHHhhc----cccchhhhhc--ccccccCCC-C----CCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018213          270 NVLVEVVSQG----AISAPMYSLK--GPSMIESLY-P----TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  337 (359)
Q Consensus       270 ~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~-~----~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  337 (359)
                      +++.++...+    ...++..+++  .+.+..+.. .    ..+...++.+|++.++++++++|+++|+++.++++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~  331 (366)
T 1evy_A          253 SAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK  331 (366)
T ss_dssp             TTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred             ccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence            7654321100    0112222211  112222110 0    01223356799999999999999999999999988764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.87  E-value=2.4e-24  Score=198.35  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=143.5

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|++.|++..+.+.++.+.|...........          ...++.+++|||||+|.
T Consensus        89 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~----------~~~~l~g~~vgIIG~G~  156 (333)
T 2d0i_A           89 YVTKVSGLLSE--AVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFK----------RIESLYGKKVGILGMGA  156 (333)
T ss_dssp             EEECCCHHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSC----------CCCCSTTCEEEEECCSH
T ss_pred             EEEeCCCcChH--HHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCc----------ccCCCCcCEEEEEccCH
Confidence            34455777766  8899999999999999999999999999953100000000          00128889999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  161 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v  161 (359)
                      ||+.+|+.+..+|++|++|||+++. +...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|+++ ++
T Consensus       157 iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i--~~~~~~~mk~g-il  231 (333)
T 2d0i_A          157 IGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHII--NEERVKKLEGK-YL  231 (333)
T ss_dssp             HHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSB--CHHHHHHTBTC-EE
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHh--CHHHHhhCCCC-EE
Confidence            9999999999999999999998865 43344466554 89999999999999999988999998  45677889999 99


Q ss_pred             EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      ||++++.+.+++++.++++++.+.....++++.++
T Consensus       232 in~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP  266 (333)
T 2d0i_A          232 VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEP  266 (333)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSS
T ss_pred             EECCCCcccCHHHHHHHHHcCCceEEEecCCCCCC
Confidence            99999999999999999998877777777777554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.87  E-value=1.4e-21  Score=182.38  Aligned_cols=261  Identities=10%  Similarity=0.033  Sum_probs=178.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC-------CcEEEEcCCcc-----chhHHHhC--------------CCccCCCHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPD  122 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~  122 (359)
                      +..|+|+|||+|.||..+|..|++.|       ++|++|+|+++     ..+.+.+.              ++....+++
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence            44579999999999999999999998       99999999987     55555432              123346788


Q ss_pred             HHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH---H----HHHHHHHHHhcCCeeecCCCCCCC
Q 018213          123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---T----SKLINGHIKATGASFLEAPVSGSK  195 (359)
Q Consensus       123 ~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~---~----~~~l~~~l~~~~~~~~~~~~~~~~  195 (359)
                      ++++++|+||+|+| +..++.++   +++.+.+++++++|+++++...   .    .+.+.+.+. ....+...|.+...
T Consensus        86 ~~~~~aD~Vilav~-~~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~~  160 (354)
T 1x0v_A           86 QAAEDADILIFVVP-HQFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANIASE  160 (354)
T ss_dssp             HHHTTCSEEEECCC-GGGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCCHHH
T ss_pred             HHHcCCCEEEEeCC-HHHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCcHHH
Confidence            88899999999997 67888888   7787888899999999876431   1    222222221 11223334433221


Q ss_pred             ccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 018213          196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGSMMATFSEG  258 (359)
Q Consensus       196 ~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~-----------------~n~~~~~~~~~~~Ea  258 (359)
                      ........+++.+.+++..+.+.++|+..+.+++..++.....|.|++                 .|.....+..++.|+
T Consensus       161 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~  240 (354)
T 1x0v_A          161 VADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM  240 (354)
T ss_dssp             HHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            111122344455667888999999999999988888886556777766                 455566678899999


Q ss_pred             HHHHHHcCC---CHHHHHH------HHhhccccchhhhhcccccccCCCCC--------CcchhHHHHHHHHHHHHHHhc
Q 018213          259 LLHSEKVGL---DPNVLVE------VVSQGAISAPMYSLKGPSMIESLYPT--------AFPLKHQQKDLRLALGLAESV  321 (359)
Q Consensus       259 ~~l~~~~Gi---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~kd~~~~~~~a~~~  321 (359)
                      ..++++.|+   +++++.+      ++..+.. +... ...+.+....+..        .+...+..+|++.++++++++
T Consensus       241 ~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~  318 (354)
T 1x0v_A          241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNR-KVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHK  318 (354)
T ss_dssp             HHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHH-HHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcccccccchHHHHHHhhcc-cccH-HHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHh
Confidence            999999999   8766532      2222111 1111 0122222101110        123445679999999999999


Q ss_pred             CC--CchHHHHHHHHHH
Q 018213          322 SQ--STPIAAAANELYK  336 (359)
Q Consensus       322 g~--~~p~~~~~~~~~~  336 (359)
                      |+  ++|+++.+++++.
T Consensus       319 gv~~~~P~~~~v~~~~~  335 (354)
T 1x0v_A          319 GLVDKFPLFMAVYKVCY  335 (354)
T ss_dssp             TCGGGSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            99  9999999998875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.87  E-value=2.2e-21  Score=182.40  Aligned_cols=259  Identities=11%  Similarity=0.061  Sum_probs=178.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-------CcEEEEcCCcc-----chhHHHhC--------------CCccCCCHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPDEVA  125 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~~  125 (359)
                      |+|+|||+|+||.++|..|++.|       ++|++|+|+++     +.+.+.+.              ++..+.++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            68999999999999999999999       99999999987     66665542              234456778888


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccc----cCCCCCEEEeccCCChH---HHHHHHHHHHhc---CCeeecCCCCCCC
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAAS----GMGPGKGYVDVSTVDGD---TSKLINGHIKAT---GASFLEAPVSGSK  195 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~----~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~---~~~~~~~~~~~~~  195 (359)
                      +++|+||+++| +..++.++   +++.+    .+++++++|+++++...   ..+.+.+.+.+.   ...+...|.+..+
T Consensus       102 ~~aDvVilav~-~~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~  177 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMD  177 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHH
T ss_pred             cCCCEEEEcCC-HHHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHH
Confidence            99999999997 78899998   77777    78899999999876432   112233333221   1223334433221


Q ss_pred             ccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHH-----------------HHHHHHHHHHHHHH
Q 018213          196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV-----------------NMIMGSMMATFSEG  258 (359)
Q Consensus       196 ~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~-----------------n~~~~~~~~~~~Ea  258 (359)
                      ........+++.+++++..+.+.++|+..+.+++..++.....|.|++.                 |.....+..++.|+
T Consensus       178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~  257 (375)
T 1yj8_A          178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM  257 (375)
T ss_dssp             HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence            1122233445556788889999999999999988888865566766644                 44666678899999


Q ss_pred             HHHHHHc--CCCHHHHHH------HHhhccccchhhhhccccccc-CC-CC--C------CcchhHHHHHHHHHHHHHHh
Q 018213          259 LLHSEKV--GLDPNVLVE------VVSQGAISAPMYSLKGPSMIE-SL-YP--T------AFPLKHQQKDLRLALGLAES  320 (359)
Q Consensus       259 ~~l~~~~--Gi~~~~~~~------~~~~~~~~s~~~~~~~~~~~~-~~-~~--~------~~~~~~~~kd~~~~~~~a~~  320 (359)
                      ..++++.  |++++++.+      ++..+.. +.. ...++.+.. ++ +.  .      .+...+..+|.+.+.+++++
T Consensus       258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~~~-~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~  335 (375)
T 1yj8_A          258 ILFGKVFFQKFNENILLESCGFADIITSFLA-GRN-AKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKE  335 (375)
T ss_dssp             HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-SSH-HHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcchhhccccccceeEeeeC-Ccc-HHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHH
Confidence            9999999  698877643      2332221 110 001112222 10 11  0      02345678999999999999


Q ss_pred             cCC--CchHHHHHHHHHH
Q 018213          321 VSQ--STPIAAAANELYK  336 (359)
Q Consensus       321 ~g~--~~p~~~~~~~~~~  336 (359)
                      +|+  ++|+++++++++.
T Consensus       336 ~gv~~~~P~~~~v~~~~~  353 (375)
T 1yj8_A          336 KNMTNEFPLFTVLHKISF  353 (375)
T ss_dssp             TTCGGGCHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHh
Confidence            999  9999999988875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.87  E-value=1.7e-22  Score=178.73  Aligned_cols=178  Identities=20%  Similarity=0.244  Sum_probs=135.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--------------hhHHHh-CCCccCCCHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--------------CDPLIS-LGAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--------------~~~~~~-~g~~~~~~~~~~~~~aDivi~  133 (359)
                      +.+++|+|||+|+||.++|+.|.+.|++|++|||++++              .+.+.+ .+...+.++++++++||+||+
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVil   96 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVN   96 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEE
Confidence            77799999999999999999999999999999999876              334333 245556788999999999999


Q ss_pred             eeCChhHHHHHhcccccc-cccCCCCCEEEeccCC-----------ChHH----HHHHHHHHHh----cCCeeecCCCCC
Q 018213          134 MLADPESAMDVACGKHGA-ASGMGPGKGYVDVSTV-----------DGDT----SKLINGHIKA----TGASFLEAPVSG  193 (359)
Q Consensus       134 ~~p~~~~~~~~~~~~~~~-~~~l~~~~~vi~~s~~-----------~~~~----~~~l~~~l~~----~~~~~~~~~~~~  193 (359)
                      ++| +.....++   .++ .+.+ ++++|||++.+           .+..    .+.+.+.+..    +++.++++|+++
T Consensus        97 avp-~~~~~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~  171 (245)
T 3dtt_A           97 ATE-GASSIAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMV  171 (245)
T ss_dssp             CSC-GGGHHHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHH
T ss_pred             ccC-cHHHHHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhc
Confidence            998 55556666   444 4445 89999999943           2222    2334333322    267778888888


Q ss_pred             CCccccCCceEEEe-cCCHHHHHHHHHHHHHhCCC-eEEeCccChHHHHHHHHHHHHHHH
Q 018213          194 SKKPAEDGQLIFLA-AGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVVNMIMGSM  251 (359)
Q Consensus       194 ~~~~~~~~~~~~~~-~g~~~~~~~v~~ll~~lg~~-~~~~g~~~~~~~~kl~~n~~~~~~  251 (359)
                      ++.....++..+++ +++++.++.++++|+.+|+. ++++|+.+.+..+|++.|.+....
T Consensus       172 ~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~  231 (245)
T 3dtt_A          172 DPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW  231 (245)
T ss_dssp             CGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred             CccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence            77665555555555 55699999999999999975 689999999999999999988876

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.86  E-value=2.1e-21  Score=173.95  Aligned_cols=203  Identities=16%  Similarity=0.184  Sum_probs=154.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +.+|+|+|||+|.||..++..|...|++ |.+|||++++.+.+.+. |+....+++++++++|+|++++| +.....++ 
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~-~~~~~~v~-   85 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLK-DSAFAELL-   85 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCC-HHHHHHHH-
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecC-HHHHHHHH-
Confidence            3458999999999999999999999999 89999998887777665 78777888898899999999998 55678888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~  226 (359)
                        +++.+.+++++++++++++.+.+.  +.+.+...+..+..+|+.+.+.....+..+++.+++++.++.+.++++.+|.
T Consensus        86 --~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~g~  161 (266)
T 3d1l_A           86 --QGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSN  161 (266)
T ss_dssp             --HHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCS
T ss_pred             --HHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhcCC
Confidence              677777889999999999877543  4444433344445566555433222333334447789999999999999999


Q ss_pred             CeEEeCccC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          227 SRFYLGDVG---NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       227 ~~~~~g~~~---~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      +++++++.+   .+.+.|+++|..  ..+..+.|+  ++++.|++++++.+++..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~  215 (266)
T 3d1l_A          162 RVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYNLPFDVMLPLIDETAR  215 (266)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTTCCGGGGHHHHHHHHH
T ss_pred             cEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcCCCHHHHHHHHHHHHH
Confidence            999998754   567888888874  234556675  568999999999998887643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.86  E-value=2.6e-21  Score=174.22  Aligned_cols=188  Identities=14%  Similarity=0.176  Sum_probs=144.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-------CCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      -..++|+|||+|.||..||..|+ .|++|++||++++..+...+.       ++...+++++ +++||+||.|+|.+.++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            34589999999999999999999 999999999999888777665       5666778877 78999999999999998


Q ss_pred             HHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHH----hcCCeeecCCCCCCCccccCCceEEEecC---CHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIK----ATGASFLEAPVSGSKKPAEDGQLIFLAAG---DKSL  213 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~  213 (359)
                      +..++  .++ ..+ ++++++ |+|+.++..   +.+.+.    ..|.+|++ |+.       ..+++.++.+   +++.
T Consensus        88 k~~l~--~~l-~~~-~~~IlasntSti~~~~---~a~~~~~~~r~~G~Hf~~-Pv~-------~~~lveiv~g~~t~~~~  152 (293)
T 1zej_A           88 KVEVL--REV-ERL-TNAPLCSNTSVISVDD---IAERLDSPSRFLGVHWMN-PPH-------VMPLVEIVISRFTDSKT  152 (293)
T ss_dssp             HHHHH--HHH-HTT-CCSCEEECCSSSCHHH---HHTTSSCGGGEEEEEECS-STT-------TCCEEEEEECTTCCHHH
T ss_pred             HHHHH--HHH-hcC-CCCEEEEECCCcCHHH---HHHHhhcccceEeEEecC-ccc-------cCCEEEEECCCCCCHHH
Confidence            88875  333 445 888885 777777653   333222    22566666 322       2345555554   8999


Q ss_pred             HHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213          214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  284 (359)
Q Consensus       214 ~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~  284 (359)
                      ++++.++++.+|+.++++++.      +++++.+.    ..++|++.++++ |++++++++++..+.+.++
T Consensus       153 ~~~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~  212 (293)
T 1zej_A          153 VAFVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY  212 (293)
T ss_dssp             HHHHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence            999999999999999999865      66666554    457899999999 8899999999987766554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.85  E-value=7.6e-20  Score=172.55  Aligned_cols=255  Identities=18%  Similarity=0.175  Sum_probs=187.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASC  128 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~a  128 (359)
                      .++.+|+|||+|.+|..+|..|+..|++|+++|.++++++.+.+.                    ....+++.++.++.+
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a   98 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT   98 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence            355789999999999999999999999999999999887765431                    134566888889999


Q ss_pred             CEEEEeeCChh---------HHHHHhcccccccccCC---CCCEEEeccCCChHHHHHHHHHH-Hhc--C--CeeecCCC
Q 018213          129 DVTFAMLADPE---------SAMDVACGKHGAASGMG---PGKGYVDVSTVDGDTSKLINGHI-KAT--G--ASFLEAPV  191 (359)
Q Consensus       129 Divi~~~p~~~---------~~~~~~~~~~~~~~~l~---~~~~vi~~s~~~~~~~~~l~~~l-~~~--~--~~~~~~~~  191 (359)
                      |++++|+|.|.         .+....   +.+.+.++   ++.+||..|+.+|..++.+...+ .+.  +  +.+...|-
T Consensus        99 d~~~I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PE  175 (444)
T 3vtf_A           99 DATFIAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPE  175 (444)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCC
T ss_pred             CceEEEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcc
Confidence            99999998652         334444   45555554   67899999999999887765443 332  2  23334554


Q ss_pred             CCCCccc----cCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018213          192 SGSKKPA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL  267 (359)
Q Consensus       192 ~~~~~~~----~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi  267 (359)
                      +-.+-..    ....-+++.+.++.+.+.+.++++.+....+. .++..++..|++.|.+....++.++|...+|++.|+
T Consensus       176 rl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~Gi  254 (444)
T 3vtf_A          176 FLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLV-MKPREAELVKYASNVFLALKISFANEVGLLAKRLGV  254 (444)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEE-echhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4333221    11222333445777888899999888766554 456679999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhccccchhhhhcccccccCCCCC--CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213          268 DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  338 (359)
Q Consensus       268 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  338 (359)
                      |..++.+.+......           ...-+.|  |+....+.||..++...++++|++.++++++.++-+..
T Consensus       255 Dv~eV~~a~~~d~ri-----------g~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~  316 (444)
T 3vtf_A          255 DTYRVFEAVGLDKRI-----------GRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYM  316 (444)
T ss_dssp             CHHHHHHHHHTSTTS-----------CSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhccCCCC-----------CCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHH
Confidence            999999998753211           1111223  33445678999999999999999999999888776544

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.85  E-value=7.9e-23  Score=189.23  Aligned_cols=153  Identities=11%  Similarity=0.074  Sum_probs=129.7

Q ss_pred             eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI   81 (359)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~   81 (359)
                      .+...|+|+..  +++|++++++|+++|+..          |           .             +.+++|||||+|+
T Consensus        86 ~v~n~pg~~~~--~VAE~~l~~lL~l~r~~g----------~-----------~-------------l~gktvGIIGlG~  129 (381)
T 3oet_A           86 GFSAAPGCNAI--AVVEYVFSALLMLAERDG----------F-----------S-------------LRDRTIGIVGVGN  129 (381)
T ss_dssp             EEECCTTTTHH--HHHHHHHHHHHHHHHHTT----------C-----------C-------------GGGCEEEEECCSH
T ss_pred             EEEECCCcCcc--hhHHHHHHHHHHHHHhcC----------C-----------c-------------cCCCEEEEEeECH
Confidence            45566777776  888899999998887520          1           1             5668999999999


Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhH----HHHHhcccccccccCCC
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGP  157 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~----~~~~~~~~~~~~~~l~~  157 (359)
                      ||+.+|+++..+|++|.+||++.+..    . ......++++++++||+|++|+|.+++    |++++  +++.++.|++
T Consensus       130 IG~~vA~~l~a~G~~V~~~d~~~~~~----~-~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li--~~~~l~~mk~  202 (381)
T 3oet_A          130 VGSRLQTRLEALGIRTLLCDPPRAAR----G-DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLA--DETLIRRLKP  202 (381)
T ss_dssp             HHHHHHHHHHHTTCEEEEECHHHHHT----T-CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSB--CHHHHHHSCT
T ss_pred             HHHHHHHHHHHCCCEEEEECCChHHh----c-cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhc--CHHHHhcCCC
Confidence            99999999999999999999854321    1 233456899999999999999999999    99999  7888999999


Q ss_pred             CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213          158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |+++||++||.++++++|.++++++++.....+++..++.
T Consensus       203 gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~  242 (381)
T 3oet_A          203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPD  242 (381)
T ss_dssp             TEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS
T ss_pred             CcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCC
Confidence            9999999999999999999999999998888899887764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.84  E-value=6.2e-20  Score=163.98  Aligned_cols=242  Identities=15%  Similarity=0.178  Sum_probs=167.6

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+|+|+|||+|+||+.++..|.+.|    ++|.+|||++++      .|+....+++++++++|+|++|+| +..++.++
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~   75 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL   75 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH
Confidence            4578999999999999999999999    799999998875      477777889899999999999998 77888888


Q ss_pred             cccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhc--CCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHH
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVA  218 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~  218 (359)
                         +++.+.+ ++.++|..+++ .+.   .+.+.+...  .+.++. +|..+.     .+ ..+++++   +++.++.+.
T Consensus        76 ---~~l~~~l-~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~-----~g-~~~~~~~~~~~~~~~~~~~  142 (262)
T 2rcy_A           76 ---NNIKPYL-SSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVG-----EG-SFIYCSNKNVNSTDKKYVN  142 (262)
T ss_dssp             ---HHSGGGC-TTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGT-----CE-EEEEEECTTCCHHHHHHHH
T ss_pred             ---HHHHHhc-CCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHc-----CC-eEEEEeCCCCCHHHHHHHH
Confidence               6777777 45555554444 442   455555432  233432 333322     34 4444444   688899999


Q ss_pred             HHHHHhCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhh--hccccc
Q 018213          219 PLLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYS--LKGPSM  293 (359)
Q Consensus       219 ~ll~~lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~--~~~~~~  293 (359)
                      ++|+.+|. ++++++........+.  .+.+...+...+.|+   +.+.|++++.+.+++..+...+. +..  ...+.+
T Consensus       143 ~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
T 2rcy_A          143 DIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQ  218 (262)
T ss_dssp             HHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999997 8888875444444443  344444444444444   58899999999988876543333 221  234556


Q ss_pred             ccCCC-CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          294 IESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       294 ~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      ..+.+ .++++....       ++..++.|++.++.+++.+.++++.+.+
T Consensus       219 l~d~~~~~~~t~~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~  261 (262)
T 2rcy_A          219 LKDNIVSPGGITAVG-------LYSLEKNSFKYTVMNAVEAACEKSKAMG  261 (262)
T ss_dssp             HHHHHCCTTSHHHHH-------HHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCChHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            66554 455654444       3344667999999999999999988754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.84  E-value=1.8e-19  Score=166.74  Aligned_cols=254  Identities=18%  Similarity=0.167  Sum_probs=174.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~~p~  137 (359)
                      .|||+|||+|.||..+|..|++.|++|++|+|+ +..+.+.+.|..             ...++++ +..+|+|++++| 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk-   79 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVK-   79 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCC-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCC-
Confidence            478999999999999999999999999999996 556666665543             2356666 588999999996 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCCh------------------HHHHHHHHHHHhcCC----eeecCCCCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDG------------------DTSKLINGHIKATGA----SFLEAPVSGSK  195 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~------------------~~~~~l~~~l~~~~~----~~~~~~~~~~~  195 (359)
                      +.+++.++   +++.+.++++++||.+.+|-+                  ...+.+.+.+....+    .+..+...++.
T Consensus        80 ~~~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg  156 (335)
T 3ghy_A           80 APALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG  156 (335)
T ss_dssp             HHHHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred             chhHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence            68899998   888888999999999988842                  233455565543321    11111122211


Q ss_pred             ccccCCceEEEec----CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHH---------------------HH
Q 018213          196 KPAEDGQLIFLAA----GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GS  250 (359)
Q Consensus       196 ~~~~~~~~~~~~~----g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~---------------------~~  250 (359)
                      .....+...+.++    .+.+..+.+.++|+..+.++....+.....|.|++.|...                     ..
T Consensus       157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l  236 (335)
T 3ghy_A          157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAF  236 (335)
T ss_dssp             EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHH
T ss_pred             EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHH
Confidence            1111111122333    2457778899999999999988888877999997765432                     23


Q ss_pred             HHHHHHHHHHHHHHcCCCH----HHHHHHHhhccccchhhhhcccccccCCCCCCc---chhHHHHHHHHHHHHHHhcCC
Q 018213          251 MMATFSEGLLHSEKVGLDP----NVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF---PLKHQQKDLRLALGLAESVSQ  323 (359)
Q Consensus       251 ~~~~~~Ea~~l~~~~Gi~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~kd~~~~~~~a~~~g~  323 (359)
                      +..++.|+..++++.|+++    +...+.....       ....++|.++ ...+.   .++..   .+.++++++++|+
T Consensus       237 ~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~-------~~~~sSM~qD-~~~gr~~tEid~i---~G~vv~~a~~~gv  305 (335)
T 3ghy_A          237 CLAVMAEAKAIGARIGCPIEQSGEARSAVTRQL-------GAFKTSMLQD-AEAGRGPLEIDAL---VASVREIGLHVGV  305 (335)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTT-------CSCCCTTTC------CCCCCHHHH---THHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCCCccHHHHHHHHhcc-------CCCCcHHHHH-HHcCCCCchHHHH---hhHHHHHHHHhCC
Confidence            4678899999999999754    2222322221       1123456543 33222   35555   7889999999999


Q ss_pred             CchHHHHHHHHHHHHHHC
Q 018213          324 STPIAAAANELYKVAKSH  341 (359)
Q Consensus       324 ~~p~~~~~~~~~~~a~~~  341 (359)
                      ++|+++.++++++...+.
T Consensus       306 ~~P~~~~l~~li~~~e~~  323 (335)
T 3ghy_A          306 PTPQIDTLLGLVRLHAQT  323 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999987654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.84  E-value=8.6e-20  Score=164.45  Aligned_cols=251  Identities=17%  Similarity=0.159  Sum_probs=175.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC---cEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +|+|+|||+|+||.++++.|.+.|+   +|++|||++++.+.+.+. |+..+.+..++++++|+||+++| +..+..++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH-
Confidence            4789999999999999999999999   999999999988888775 88888899999999999999996 78888988 


Q ss_pred             cccccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHHHH
Q 018213          147 GKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLL  221 (359)
Q Consensus       147 ~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll  221 (359)
                        +++.+. ++++++||+++.+-+.  ..+.+.+.. +..++. +|..  +.....+. ..++.+   +++..+.+.++|
T Consensus        81 --~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~mPn~--p~~v~~g~-~~l~~~~~~~~~~~~~v~~l~  152 (280)
T 3tri_A           81 --EELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRAMPNT--PSSVRAGA-TGLFANETVDKDQKNLAESIM  152 (280)
T ss_dssp             --HHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEEECCG--GGGGTCEE-EEEECCTTSCHHHHHHHHHHH
T ss_pred             --HHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEEecCC--hHHhcCcc-EEEEeCCCCCHHHHHHHHHHH
Confidence              777777 7888899987666553  456666643 333443 3432  22222222 233433   688999999999


Q ss_pred             HHhCCCeEEeC-ccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhhcc--cccc-
Q 018213          222 DIMGKSRFYLG-DVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLKG--PSMI-  294 (359)
Q Consensus       222 ~~lg~~~~~~g-~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~--~~~~-  294 (359)
                      +.+|. ++++. +........+.  .+.+.+.++.++.|+   +.+.|+++++..+++.++...+. +.....  |..+ 
T Consensus       153 ~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~  228 (280)
T 3tri_A          153 RAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLR  228 (280)
T ss_dssp             GGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             HHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            99998 44453 33222222222  244555555555555   47899999999999987643332 222111  1112 


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          295 ESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       295 ~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      .....|+.+...       .++..++.|++..+.+++.+.++++.+.|
T Consensus       229 ~~v~spgGtT~~-------~l~~le~~g~~~~~~~av~aa~~r~~el~  269 (280)
T 3tri_A          229 QFVTSPGGTTEQ-------AIKVLESGNLRELFIKALTAAVNRAKELS  269 (280)
T ss_dssp             HHHCCTTSHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            223345544333       45677899999999999999999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.83  E-value=3.7e-20  Score=167.63  Aligned_cols=201  Identities=15%  Similarity=0.184  Sum_probs=157.3

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      +|+|+|||+ |.||..+++.|...|++|++|||++++.+.+.+.|+... +..++++++|+||+++| +..+..++   +
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~-~~~~~~v~---~   85 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALP-DNIIEKVA---E   85 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSC-HHHHHHHH---H
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCC-chHHHHHH---H
Confidence            379999999 999999999999999999999999888777777676554 67788899999999997 66688888   7


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCC------ccccCC-------ceEE--EecCCHHH
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSK------KPAEDG-------QLIF--LAAGDKSL  213 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~------~~~~~~-------~~~~--~~~g~~~~  213 (359)
                      ++.+.++++++|++++++.+..  .+.+ + ..+..++ .+|+++.+      +....+       ...+  ..+++++.
T Consensus        86 ~l~~~l~~~~ivv~~s~~~~~~--~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~  161 (286)
T 3c24_A           86 DIVPRVRPGTIVLILDAAAPYA--GVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEH  161 (286)
T ss_dssp             HHGGGSCTTCEEEESCSHHHHH--TCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHH
T ss_pred             HHHHhCCCCCEEEECCCCchhH--HHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHH
Confidence            7878888999999987776432  2333 2 2367788 68888766      323334       1222  24578899


Q ss_pred             HHHHHHHHHHhCC---CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHhhcc
Q 018213          214 YNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVVSQGA  280 (359)
Q Consensus       214 ~~~v~~ll~~lg~---~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~~~~~  280 (359)
                      .+.+.++|+.+|.   +++++++.+.+.+.+.+.|.....++..+.|++..+. +.|++.+++.+++..+.
T Consensus       162 ~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~  232 (286)
T 3c24_A          162 YAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL  232 (286)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999   7888887765566588888777777788888776654 45999999999988653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.82  E-value=5.2e-19  Score=161.71  Aligned_cols=171  Identities=16%  Similarity=0.234  Sum_probs=140.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCC--ccCCCHHH-HhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDE-VAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~-~~~~aDivi~~~p~~~~~~~  143 (359)
                      +..|+|+|||+|.||..+|+.|.+.|+  +|++|||++++.+.+.+.|+  ....++++ ++++||+||+|+| +..+..
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~  109 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFRE  109 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSC-GGGHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCC-HHHHHH
Confidence            345899999999999999999999999  99999999988887777776  44668888 8999999999998 567788


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccc--------cCCceEEEec---CCH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDK  211 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~---g~~  211 (359)
                      ++   +++.+.++++++|+|+++++....+.+.+.+..   .+++ +|++|++...        ..+..++++.   +++
T Consensus       110 vl---~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~  183 (314)
T 3ggo_A          110 IA---KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK  183 (314)
T ss_dssp             HH---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCH
T ss_pred             HH---HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCH
Confidence            88   788888999999999999887777777777643   6777 8988865321        2456666664   478


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                      +.++.++++++.+|.+++++++........++...
T Consensus       184 ~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~l  218 (314)
T 3ggo_A          184 KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHL  218 (314)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHH
Confidence            99999999999999999999987777777776543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.82  E-value=1.1e-18  Score=160.12  Aligned_cols=255  Identities=11%  Similarity=0.167  Sum_probs=172.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC-------------ccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-------------KYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------------~~~~~~~~~~~~aDivi~~~  135 (359)
                      -..|+|+|||+|.||..+|..|++.|++|++| +++++.+.+.+.|.             ....+.++ +.++|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            44589999999999999999999999999999 88877777766543             22345554 57899999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc---CCeeecCCCCCCCccccCCceEEEecCCHH
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT---GASFLEAPVSGSKKPAEDGQLIFLAAGDKS  212 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  212 (359)
                      | +.+++.++   +++.+.++++++||.+..|-... +.+.+.+.+.   +..+..+...++......+.-.+.++. .+
T Consensus        95 k-~~~~~~~l---~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~  168 (318)
T 3hwr_A           95 K-STDTQSAA---LAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TS  168 (318)
T ss_dssp             C-GGGHHHHH---HHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CT
T ss_pred             c-cccHHHHH---HHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CH
Confidence            6 66899998   88888899999999988876543 3555555311   111111112222111111111223343 45


Q ss_pred             HHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--
Q 018213          213 LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP--  269 (359)
Q Consensus       213 ~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~~--  269 (359)
                      ..+.+.++|+..+.+++...+.....|.|++.|...+.                     +..++.|+..++++.|++.  
T Consensus       169 ~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~  248 (318)
T 3hwr_A          169 HGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPD  248 (318)
T ss_dssp             TTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred             HHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence            56789999999999998888877799999998876554                     3457889999999999853  


Q ss_pred             H---HHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          270 N---VLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       270 ~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      +   .+.+.+....       ...++|.++-... ...++..   .+.++++++++|+++|+++.++++++....+
T Consensus       249 ~~~~~~~~~~~~~~-------~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~~  314 (318)
T 3hwr_A          249 DVALAIRRIAETMP-------RQSSSTAQDLARGKRSEIDHL---NGLIVRRGDALGIPVPANRVLHALVRLIEDK  314 (318)
T ss_dssp             THHHHHHHHHHHST-------TCCCHHHHHHHTTCCCSGGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-------CCCcHHHHHHHcCChhHHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHHhh
Confidence            2   2223222221       1122333221111 1235555   7889999999999999999999999876643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.82  E-value=8.2e-19  Score=155.34  Aligned_cols=203  Identities=11%  Similarity=0.152  Sum_probs=144.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      |||+|||+|+||..+++.|.+.|+    +|++|||++++.+.+.+ .|+..+.+.+++++++|+|++|+| +..++.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            689999999999999999999998    99999999988887765 488888899999999999999995 78889998 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  223 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  223 (359)
                        +++.+.+++++++|+++.+...  +.+.+.+.. +..++. +|.  .+.....+...++.+  ++++.++.++++|+.
T Consensus        81 --~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~~-~~~~v~~~p~--~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  153 (247)
T 3gt0_A           81 --NEIKEIIKNDAIIVTIAAGKSI--ESTENAFNK-KVKVVRVMPN--TPALVGEGMSALCPNEMVTEKDLEDVLNIFNS  153 (247)
T ss_dssp             -----CCSSCTTCEEEECSCCSCH--HHHHHHHCS-CCEEEEEECC--GGGGGTCEEEEEEECTTCCHHHHHHHHHHHGG
T ss_pred             --HHHHhhcCCCCEEEEecCCCCH--HHHHHHhCC-CCcEEEEeCC--hHHHHcCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence              7888888999999976655443  345555532 333333 221  111122233333332  588999999999999


Q ss_pred             hCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhccccchhh
Q 018213          224 MGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH-SEKVGLDPNVLVEVVSQGAISAPMY  286 (359)
Q Consensus       224 lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l-~~~~Gi~~~~~~~~~~~~~~~s~~~  286 (359)
                      +|. ++++++........+..  ....++..+.|++.. +.+.|++++.+.+++.++...++.+
T Consensus       154 ~G~-~~~~~e~~~d~~~a~~g--~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~  214 (247)
T 3gt0_A          154 FGQ-TEIVSEKLMDVVTSVSG--SSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKM  214 (247)
T ss_dssp             GEE-EEECCGGGHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-EEEeCHHHccHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            998 66666543233222222  222344556677666 7899999999999999876555433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.82  E-value=1.2e-18  Score=159.59  Aligned_cols=258  Identities=16%  Similarity=0.147  Sum_probs=173.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+|.||..+|..|++.|++|++|+|++  .+.+.+.|+.              .+.+.++ +..+|+|++++| 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk-   78 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLK-   78 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCC-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecC-
Confidence            689999999999999999999999999999975  3666655432              2245554 578999999995 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEec----C
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAA----G  209 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----g  209 (359)
                      +.+++.++   +.+.+.++++++||.+..|-.. .+.+.+.+...    ++.+..+-..++-.....+...+.++    .
T Consensus        79 ~~~~~~~l---~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~  154 (312)
T 3hn2_A           79 TFANSRYE---ELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR  154 (312)
T ss_dssp             GGGGGGHH---HHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred             CCCcHHHH---HHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence            78888888   8888889999999988877532 23566665433    12222232222222112222223333    2


Q ss_pred             CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC--
Q 018213          210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVG--  266 (359)
Q Consensus       210 ~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~G--  266 (359)
                      +.+..+.+.++|+..+.++....+.....|.|++.|...+.                     +..++.|+.+++++.|  
T Consensus       155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~  234 (312)
T 3hn2_A          155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLA  234 (312)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCc
Confidence            45677889999999999998888887799999998876543                     3457889999999999  


Q ss_pred             CCH--HHHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018213          267 LDP--NVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL  343 (359)
Q Consensus       267 i~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~  343 (359)
                      ++.  +.....+......+    ...++|.++-... ...++..   .+.++++++++|+++|+++.++++++.....|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~----~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~ll~~~~~~~~  307 (312)
T 3hn2_A          235 TFIADGYVDDMLEFTDAMG----EYKPSMEIDREEGRPLEIAAI---FRTPLAYGAREGIAMPRVEMLATLLEQATGEGH  307 (312)
T ss_dssp             SCCCTTHHHHHHHHHTTSC----SCCCHHHHHHHTTCCCCHHHH---THHHHHHHHHTTCCCHHHHHHHHHHHHHTTC--
T ss_pred             cCCCHHHHHHHHHHHhcCC----CCCchHHHHHHhCCCccHHHH---hhHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc
Confidence            642  22223322211111    0122333221111 1235555   688999999999999999999999998877765


Q ss_pred             C
Q 018213          344 S  344 (359)
Q Consensus       344 ~  344 (359)
                      -
T Consensus       308 ~  308 (312)
T 3hn2_A          308 H  308 (312)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.82  E-value=6.7e-19  Score=164.40  Aligned_cols=258  Identities=14%  Similarity=0.139  Sum_probs=165.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CC--------------ccCCCHHHHhhcCCEEEEe
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--------------KYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~~~~~~~~aDivi~~  134 (359)
                      +.|+|+|||+|.||..+|..|...|++|++|+|++++.+.+.+. +.              ....+++++++++|+|+++
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            34899999999999999999999999999999998877777654 21              2456888888999999999


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC---Ceeec---CCCCCCCcccc-------CC
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG---ASFLE---APVSGSKKPAE-------DG  201 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~---~~~~~---~~~~~~~~~~~-------~~  201 (359)
                      +| +.....++   +++.+.+++++++|++....+... .+.+.+.+.+   +.+++   +|+.+......       .+
T Consensus        83 v~-~~~~~~~~---~~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~  157 (359)
T 1bg6_A           83 VP-AIHHASIA---ANIASYISEGQLIILNPGATGGAL-EFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKG  157 (359)
T ss_dssp             SC-GGGHHHHH---HHHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECS
T ss_pred             CC-chHHHHHH---HHHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeec
Confidence            97 55678888   778888999999998833233332 3455555543   43543   45443211110       01


Q ss_pred             ceEEEe---cCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHH--------------------------------HHH
Q 018213          202 QLIFLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV--------------------------------VNM  246 (359)
Q Consensus       202 ~~~~~~---~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~--------------------------------~n~  246 (359)
                      ...+-.   +++++.++.+.++|..+.    ...+    .|.|+.                                .+.
T Consensus       158 ~~~~g~~~~~~~~~~~~~l~~~~~~~~----~~~d----i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~  229 (359)
T 1bg6_A          158 AMDFACLPAAKAGWALEQIGSVLPQYV----AVEN----VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPS  229 (359)
T ss_dssp             CEEEEEESGGGHHHHHHHHTTTCTTEE----ECSC----HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHH
T ss_pred             ceEEEeccccccHHHHHHHHHHhhhcE----EcCC----hHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHH
Confidence            111111   224445566666664431    1122    122222                                111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchh--hhh-cccccccCCCCCCcchh--HHHHHH----HHHHHH
Q 018213          247 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPM--YSL-KGPSMIESLYPTAFPLK--HQQKDL----RLALGL  317 (359)
Q Consensus       247 ~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~~~~~~~--~~~kd~----~~~~~~  317 (359)
                      ....+..++.|+..++++.|++++++.+.+......++.  ... ...+|.++.. ....++  .+.+|+    +.++++
T Consensus       230 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~-~~~e~~~~~~~~D~~~~~g~~~~~  308 (359)
T 1bg6_A          230 VGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIA-GPINLNTRYFFEDVSTGLVPLSEL  308 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCB-CCSSSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCC-CCCCCCccceecCcCccHHHHHHH
Confidence            235567788999999999999987777765543322221  000 1234554433 222345  778887    899999


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHC
Q 018213          318 AESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       318 a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ++++|+++|++++++++++.....
T Consensus       309 a~~~gv~~P~~~~l~~~~~~~~~~  332 (359)
T 1bg6_A          309 GRAVNVPTPLIDAVLDLISSLIDT  332 (359)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCCchHHHHHHHHHHHHHCC
Confidence            999999999999999999987654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.80  E-value=1.9e-18  Score=157.21  Aligned_cols=182  Identities=14%  Similarity=0.177  Sum_probs=138.6

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      ++|+||| +|.||.++|..|.+.|++|++|||+++.             +..++++++|+||+|+| +..+..++   ++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp-~~~~~~vl---~~   84 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVP-INLTLETI---ER   84 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSC-GGGHHHHH---HH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCC-HHHHHHHH---HH
Confidence            6899999 9999999999999999999999997642             46678899999999997 66799998   77


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCCe
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSR  228 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~lg~~~  228 (359)
                      +.+.++++++|+++++.+....+.+.+.+   +..+++ +|+++++.....+..++++.+ +++..+.+.++|+.+|.++
T Consensus        85 l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~  161 (298)
T 2pv7_A           85 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKI  161 (298)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEE
T ss_pred             HHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEE
Confidence            87889999999999888876655555443   356776 788887765545555555543 6888999999999999998


Q ss_pred             EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          229 FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       229 ~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +.+++.....+.+++.+.... +...+.+++   .+.|++.+...++..
T Consensus       162 ~~~~~~~~d~~~a~~~~~p~~-~a~~l~~~l---~~~g~~~~~~~~la~  206 (298)
T 2pv7_A          162 YQTNATEHDHNMTYIQALRHF-STFANGLHL---SKQPINLANLLALSS  206 (298)
T ss_dssp             EECCHHHHHHHHHHHTHHHHH-HHHHHHHHH---TTSSCCHHHHHHTCC
T ss_pred             EECCHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhcCCCHHHHHhhcC
Confidence            888887667777777665333 223344544   347777766655444

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.80  E-value=2.7e-18  Score=154.91  Aligned_cols=180  Identities=17%  Similarity=0.240  Sum_probs=141.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCc--cCCCHHHHhh-cCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAA-SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~  146 (359)
                      |+|+|||+|.||..+++.|...|+  +|++|||++++.+.+.+.|+.  ...+++++++ ++|+|++|+| +..+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCC-HHHHHHHH-
Confidence            689999999999999999999998  999999998887777766764  3567888888 9999999997 66888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc----c----ccCCceEEEe---cCCHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK----P----AEDGQLIFLA---AGDKSLY  214 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~----~----~~~~~~~~~~---~g~~~~~  214 (359)
                        .++.+.++++.+|++++++.....+.+.+.+...   +++ +|+++.+.    .    ...+..++++   +++++..
T Consensus        80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~  154 (281)
T 2g5c_A           80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL  154 (281)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred             --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHH
Confidence              6777788999999999998887777787777642   565 67665432    1    1245555666   5688899


Q ss_pred             HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHH
Q 018213          215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL  259 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~  259 (359)
                      +.+.++|+.+|.+++++++...+.+.+++.+....... ++.+++
T Consensus       155 ~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~-~~~~~~  198 (281)
T 2g5c_A          155 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF-ALVDTL  198 (281)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            99999999999999899987778899999877644332 334444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.80  E-value=2.5e-18  Score=155.03  Aligned_cols=194  Identities=13%  Similarity=0.192  Sum_probs=144.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |+|+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+.  ...+++++ .++|+|++|+| +..+..++   +
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~---~   75 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTL---E   75 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHH---H
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHH---H
Confidence            579999999999999999999999999999998887777766663  45678888 89999999997 77888888   7


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHHHHH
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLYNTV  217 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~~v  217 (359)
                      ++.+.++++++|+++++.++...+.+.+.+.    .+++ +|+.+....        ...+..+.++.   ++++..+.+
T Consensus        76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v  151 (279)
T 2f1k_A           76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACL  151 (279)
T ss_dssp             HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHH
T ss_pred             HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHH
Confidence            7778889999999998887766655555432    4555 476643321        12343444443   478889999


Q ss_pred             HHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhh
Q 018213          218 APLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD--PNVLVEVVSQ  278 (359)
Q Consensus       218 ~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~  278 (359)
                      .++|+.+|.+++++++.....+.+++.|...+... ++.++.   ...|.+  .+....++..
T Consensus       152 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~~---~~~~~~~~~~~~~~l~~~  210 (279)
T 2f1k_A          152 RSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQAC---AGEKDGDILKLAQNLASS  210 (279)
T ss_dssp             HHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---HTCSCHHHHHHHHHHCCH
T ss_pred             HHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHHH---HhcccccchhHHHhhcCC
Confidence            99999999999999987778999988886444433 344443   455655  4555555443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.80  E-value=4.3e-21  Score=178.18  Aligned_cols=151  Identities=12%  Similarity=0.061  Sum_probs=126.4

Q ss_pred             eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM   82 (359)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i   82 (359)
                      +...|+|+..  +++|++++++|++.|++            .         +.             +.+++|||||+|+|
T Consensus        84 v~n~pg~~~~--~vAE~~l~~lL~l~r~~------------~---------~~-------------l~g~tvGIIGlG~I  127 (380)
T 2o4c_A           84 WSSAPGCNAR--GVVDYVLGCLLAMAEVR------------G---------AD-------------LAERTYGVVGAGQV  127 (380)
T ss_dssp             EECCTTTTHH--HHHHHHHHHHHHHHHHH------------T---------CC-------------GGGCEEEEECCSHH
T ss_pred             EEeCCCcChH--HHHHHHHHHHHHHHhhh------------h---------cc-------------cCCCEEEEEeCCHH
Confidence            3444666665  78899999999888862            1         11             66789999999999


Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhH----HHHHhcccccccccCCCC
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPG  158 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~----~~~~~~~~~~~~~~l~~~  158 (359)
                      |+.+|++|..+|++|++||++++..    ..+. ...++++++++||+|++|+|.+++    +++++  +++.++.|++|
T Consensus       128 G~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li--~~~~l~~mk~g  200 (380)
T 2o4c_A          128 GGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLL--DEPRLAALRPG  200 (380)
T ss_dssp             HHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSB--CHHHHHTSCTT
T ss_pred             HHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhc--CHHHHhhCCCC
Confidence            9999999999999999999865321    2233 346899999999999999999998    99998  67888999999


Q ss_pred             CEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213          159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       159 ~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +++||++|+.+++++++.++++++++.....+++..+|
T Consensus       201 ailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP  238 (380)
T 2o4c_A          201 TWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP  238 (380)
T ss_dssp             EEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred             cEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCC
Confidence            99999999999999999999999888877788887766

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.80  E-value=1.9e-18  Score=158.88  Aligned_cols=254  Identities=15%  Similarity=0.091  Sum_probs=171.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC---------------ccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---------------KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------------~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|+|||+|.||..+|..|++.|++|++|+|++  .+.+.+.|+               ..+.+++++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            789999999999999999999999999999976  255554432               223566676668999999996


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC------CCccccCCceEEEec--
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG------SKKPAEDGQLIFLAA--  208 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--  208 (359)
                       +.++..++   +.+.+.++++++||.+..|-... +.+.+.+...  .++.++.+.      +......+...+.++  
T Consensus        81 -~~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~  153 (320)
T 3i83_A           81 -VVEGADRV---GLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNY  153 (320)
T ss_dssp             -CCTTCCHH---HHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEES
T ss_pred             -CCChHHHH---HHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEecC
Confidence             66778887   77778888999999887775322 3555555433  233333221      111111122223332  


Q ss_pred             --CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcC
Q 018213          209 --GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS--------------------MMATFSEGLLHSEKVG  266 (359)
Q Consensus       209 --g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~--------------------~~~~~~Ea~~l~~~~G  266 (359)
                        .+.+..+.+.++|+..+.++....+.....|.|++.|...+.                    +..++.|+..++++.|
T Consensus       154 ~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G  233 (320)
T 3i83_A          154 PGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANG  233 (320)
T ss_dssp             SSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcC
Confidence              346778899999999999999888988899999998865433                    3468889999999999


Q ss_pred             CCHH--HHHHHHhhccccchhhhhcccccccCCCC-CCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          267 LDPN--VLVEVVSQGAISAPMYSLKGPSMIESLYP-TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       267 i~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ++.+  ....++......+    ...++|.++-.. ....++..   .+.++++++++|+++|+++.++++++....+
T Consensus       234 ~~l~~~~~~~~~~~~~~~~----~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~l~~~e~~  304 (320)
T 3i83_A          234 HPLPEDIVEKNVASTYKMP----PYKTSMLVDFEAGQPMETEVI---LGNAVRAGRRTRVAIPHLESVYALMKLLELR  304 (320)
T ss_dssp             CCCCTTHHHHHHHHHHHSC----CCCCHHHHHHHHTCCCCHHHH---THHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcCC----CCCCcHHHHHHhCCCchHHHH---ccHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            8632  2222222110000    011233321111 11234554   6889999999999999999999999876653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.79  E-value=1.1e-18  Score=158.26  Aligned_cols=163  Identities=15%  Similarity=0.169  Sum_probs=125.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +..|+|+|||+|.||..++..|...  |++|++|||++++.+.+.+.|.  ..+.+++++++++|+|++|+| +.....+
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v   82 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVP-IKKTIDF   82 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSC-HHHHHHH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCC-HHHHHHH
Confidence            4458999999999999999999887  6899999999888777766666  345678888899999999997 6677888


Q ss_pred             hccccccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCC----ccc----cCCceEEEe---cCCH
Q 018213          145 ACGKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KPA----EDGQLIFLA---AGDK  211 (359)
Q Consensus       145 ~~~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~----~~~----~~~~~~~~~---~g~~  211 (359)
                      +   +++.+. ++++.+|++++++.+...+.+.+.+.+.++++++ +|+++.+    ...    ..+..++++   ++++
T Consensus        83 ~---~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~  159 (290)
T 3b1f_A           83 I---KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP  159 (290)
T ss_dssp             H---HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred             H---HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence            8   677777 8899999999888877777787777654677887 7776532    111    134444444   3578


Q ss_pred             HHHHHHHHHHHHhCCCeEEeCccC
Q 018213          212 SLYNTVAPLLDIMGKSRFYLGDVG  235 (359)
Q Consensus       212 ~~~~~v~~ll~~lg~~~~~~g~~~  235 (359)
                      +..+.+.++|+.+|.+++.+++..
T Consensus       160 ~~~~~v~~l~~~~G~~~~~~~~~~  183 (290)
T 3b1f_A          160 NTIPALQDLLSGLHARYVEIDAAE  183 (290)
T ss_dssp             THHHHHHHHTGGGCCEEEECCHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEcCHHH
Confidence            889999999999999888887654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.78  E-value=3.1e-18  Score=154.68  Aligned_cols=194  Identities=13%  Similarity=0.126  Sum_probs=142.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----------C--------------CccCCCHHHHh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----------G--------------AKYQPSPDEVA  125 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----------g--------------~~~~~~~~~~~  125 (359)
                      .++|+|||+|.||..+|..|+..|++|++||+++++.+...+.           |              +....++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            4789999999999999999999999999999998876654432           1              35567888889


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEE
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  205 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (359)
                      ++||+||+++|.+.+++..++  +++.+.+++++++++.+++.+.  ..+.+.+.. ..+++....+.+.   ...+.+.
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~-~~~~ig~h~~~p~---~~~~lve  155 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLLP--SDLVGYTGR-GDKFLALHFANHV---WVNNTAE  155 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH--HHHHHHHSC-GGGEEEEEECSST---TTSCEEE
T ss_pred             ccCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CcceEEEccCCCc---ccCceEE
Confidence            999999999997765655442  6677788999999966555443  356665532 2244443222221   2234445


Q ss_pred             EecC---CHHHHHHHHHHHHHhCCCeEEeC-c-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018213          206 LAAG---DKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  280 (359)
Q Consensus       206 ~~~g---~~~~~~~v~~ll~~lg~~~~~~g-~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~  280 (359)
                      ++.+   +++.++.+.++++.+|+.++.++ + +|  .   ++++.+.    ..+.|++.++++.+.+++++++++..+.
T Consensus       156 vv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g--~---i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~~  226 (283)
T 4e12_A          156 VMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAG--Y---VLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIGT  226 (283)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTT--T---THHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC--E---EehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence            5554   78999999999999999999984 3 44  2   3333332    3577999999999999999999998654


Q ss_pred             c
Q 018213          281 I  281 (359)
Q Consensus       281 ~  281 (359)
                      +
T Consensus       227 g  227 (283)
T 4e12_A          227 G  227 (283)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=2.4e-18  Score=158.37  Aligned_cols=170  Identities=14%  Similarity=0.232  Sum_probs=136.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc----CCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS----CDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~----aDivi~~~p~~~~~~~~~  145 (359)
                      ..++|+|||+|.||.++|+.|.+.|++|++|||+++..+.+.+.|+..+.++++++++    +|+|++|+| +..+..++
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP-~~~~~~vl   85 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVP-MTAIDSLL   85 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSC-HHHHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCC-HHHHHHHH
Confidence            3478999999999999999999999999999999988888878888777888888764    799999998 67888888


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc-c-------ccCCceEEEecC---CHH-
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-P-------AEDGQLIFLAAG---DKS-  212 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-~-------~~~~~~~~~~~g---~~~-  212 (359)
                         +++.+. +++++|+|+++.+....+.+.+.+.  +..|++ +|++|++. .       ...+..++++++   +++ 
T Consensus        86 ---~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~  159 (341)
T 3ktd_A           86 ---DAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTD  159 (341)
T ss_dssp             ---HHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCC
T ss_pred             ---HHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhh
Confidence               666654 8999999999998876666665542  467888 89998762 2       123445666654   456 


Q ss_pred             -------HHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          213 -------LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       213 -------~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                             .++.+.++++.+|.+++++++..+.....++++.
T Consensus       160 ~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshl  200 (341)
T 3ktd_A          160 INSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHL  200 (341)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHH
T ss_pred             hccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHH
Confidence                   8899999999999999999887767777666554

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.77  E-value=2.2e-17  Score=156.82  Aligned_cols=190  Identities=12%  Similarity=0.122  Sum_probs=136.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh--------HHHhCC-------------CccCCCHHHHhhcC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--------PLISLG-------------AKYQPSPDEVAASC  128 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~--------~~~~~g-------------~~~~~~~~~~~~~a  128 (359)
                      ..++|+|||+|.||..||..|+..|++|++||+++++..        .+.+.|             +..+++++ .+++|
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            347899999999999999999999999999999987321        222333             23456775 67899


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  208 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (359)
                      |+||+|+|...+++..++  +++.+.++++++|++.+++.+.  ..+.+.+.. ..+++....+.+..   ..+++.++.
T Consensus       132 DlVIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~-p~r~iG~HffnPv~---~m~LvEIv~  203 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDL--NEISSVLRD-PSNLVGIHFFNPAN---VIRLVEIIY  203 (460)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHHTTSSS-GGGEEEEECCSSTT---TCCEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhH--HHHHHhccC-CcceEEEEecchhh---hCCEEEEEe
Confidence            999999998777765543  6677889999999755444443  345544432 12344432222222   234455555


Q ss_pred             C---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          209 G---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       209 g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      +   +++.++.+.++++.+|+.++.+++ +|     .++++.+.    ..++|++.++++.|++++++++++.
T Consensus       204 g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG-----fi~Nril~----~~~~EA~~l~~~~Ga~~e~ID~a~~  267 (460)
T 3k6j_A          204 GSHTSSQAIATAFQACESIKKLPVLVGNCKS-----FVFNRLLH----VYFDQSQKLMYEYGYLPHQIDKIIT  267 (460)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEEESSCCH-----HHHHHHHH----HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEEEecccH-----HHHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4   799999999999999999999988 44     23444443    3467999999999999999999987

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.76  E-value=1.8e-17  Score=151.10  Aligned_cols=194  Identities=13%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hCC------------------CccCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG------------------AKYQPS  120 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g------------------~~~~~~  120 (359)
                      ..++|+|||+|.||..+|..|+..|++|++||+++++.+...           +.|                  +....+
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            347899999999999999999999999999999987655421           122                  334668


Q ss_pred             HHHHhhcCCEEEEeeCChhHHH-HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213          121 PDEVAASCDVTFAMLADPESAM-DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE  199 (359)
Q Consensus       121 ~~~~~~~aDivi~~~p~~~~~~-~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  199 (359)
                      +++.+++||+||+++|.+.+++ .++   +++.+.++++++|++.+++.+..  .+.+.+.. .-+++..+.+.+.   .
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~---~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~-~~~~~g~h~~~P~---~  164 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELF---KRLDKFAAEHTIFASNTSSLQIT--SIANATTR-QDRFAGLHFFNPV---P  164 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHH---HHHTTTSCTTCEEEECCSSSCHH--HHHTTSSC-GGGEEEEEECSST---T
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHH---HHHHhhCCCCeEEEECCCCCCHH--HHHHhcCC-cccEEEEecCCCc---c
Confidence            8878899999999999776554 444   56667788899888655554432  34443321 1123332222211   1


Q ss_pred             CCceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018213          200 DGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV  275 (359)
Q Consensus       200 ~~~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~  275 (359)
                      ....+.++.+   +++.++.+.++++.+|..++++++ ++     +++++.+    ...++|++.++++.++++++++.+
T Consensus       165 ~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l----~~~~~Ea~~l~~~g~~~~~~id~~  235 (302)
T 1f0y_A          165 VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLL----VPYLMEAIRLYERGDASKEDIDTA  235 (302)
T ss_dssp             TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHH----HHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHH----HHHHHHHHHHHHcCCCCHHHHHHH
Confidence            2334445555   889999999999999998888876 33     3444443    245789999999999999999999


Q ss_pred             Hhhccc
Q 018213          276 VSQGAI  281 (359)
Q Consensus       276 ~~~~~~  281 (359)
                      +..+.+
T Consensus       236 ~~~g~g  241 (302)
T 1f0y_A          236 MKLGAG  241 (302)
T ss_dssp             HHHHHC
T ss_pred             HHhCCC
Confidence            876543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.75  E-value=1e-17  Score=161.29  Aligned_cols=192  Identities=16%  Similarity=0.145  Sum_probs=140.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-------------CccCCCHHHHhh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA  126 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~  126 (359)
                      .++|+|||+|.||..||..|+..|++|++||++++..+...+           .|             +....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            468999999999999999999999999999999887765432           22             23455664 578


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  205 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (359)
                      +||+||+++|...+++..++  .++.+.++++++++ |+|+.++.   .+.+.+.. ...++....+.+.+.   .+++.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~-p~~~ig~hf~~Pa~v---~~Lve  154 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKN-PERVAGLHFFNPAPV---MKLVE  154 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSS-GGGEEEEEECSSTTT---CCEEE
T ss_pred             CCCEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccC-ccceEEeeecChhhh---CCeEE
Confidence            99999999998777754332  66777889999985 56655553   34444422 123333222222111   24566


Q ss_pred             EecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213          206 LAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  281 (359)
Q Consensus       206 ~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~  281 (359)
                      ++++   +++.++.+.++++.+|+.++++++ +|     +++++.+..    .++|++.++++.+.+++++++++..+.+
T Consensus       155 vv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~~~G  225 (483)
T 3mog_A          155 VVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRDGAG  225 (483)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhcCC
Confidence            6666   899999999999999999999988 44     556655544    4679999999999999999999986544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.73  E-value=1.1e-17  Score=144.17  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=117.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+|+|+|||+|.||+++|..|.+.|++|++|+|+++                  .++++|+|++++| +..++.++   
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---   74 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---   74 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---
Confidence            6779999999999999999999999999999999764                  3568999999998 88899988   


Q ss_pred             ccccccCCCCCEEEeccCCCh-HH------------HHHHHHHHHhcCCeeec------CCCCCCCccccCCceEEEec-
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DT------------SKLINGHIKATGASFLE------APVSGSKKPAEDGQLIFLAA-  208 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~------------~~~l~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-  208 (359)
                      +++.+.++ ++++++++++.+ ..            .+.+.+.+.  +..++.      .|.++.+.........++++ 
T Consensus        75 ~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g  151 (209)
T 2raf_A           75 KQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG  151 (209)
T ss_dssp             HHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEE
T ss_pred             HHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcC
Confidence            67777777 999999988654 11            345555543  345555      33333222211123333444 


Q ss_pred             CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH
Q 018213          209 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM  251 (359)
Q Consensus       209 g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~  251 (359)
                      .+++..+.++++|+.+|.+++++++.+.+.+.|.+.+.+....
T Consensus       152 ~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~~~~  194 (209)
T 2raf_A          152 NDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQMTLA  194 (209)
T ss_dssp             SCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHHHHH
Confidence            4678899999999999999999999999999999887765443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.73  E-value=1.8e-17  Score=150.46  Aligned_cols=253  Identities=13%  Similarity=0.081  Sum_probs=168.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC---ccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---KYQPSPDEVA-ASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      |+|+|||+|.||..+|..|.+.|++|++|+|+++..+.....|.   ....+..+.+ ..+|+|++++| +.+++.++  
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk-~~~~~~~l--   79 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVK-THQLDAVI--   79 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSC-GGGHHHHG--
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCC-ccCHHHHH--
Confidence            78999999999999999999999999999998765442222232   1112334444 78999999995 88999998  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                       +++.+.++++++||.+..|-...+.     +...    ++.++.+-..++-. ...+...+. .++.+..+.+.++|+.
T Consensus        80 -~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~pg~-v~~~~~~~~-~~~~~~~~~l~~~l~~  151 (294)
T 3g17_A           80 -PHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGDVV-THFRDYQLR-IQDNALTRQFRDLVQD  151 (294)
T ss_dssp             -GGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETTEE-EEEEEEEEE-EECSHHHHHHHHHTTT
T ss_pred             -HHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCCCE-EEECCCEEe-cCccHHHHHHHHHHHh
Confidence             8888888888999999888654332     2221    22222211111111 111111122 2456677889999999


Q ss_pred             hCCCeEEeCccChHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCC--HHHHHHHHhhccc
Q 018213          224 MGKSRFYLGDVGNGAAMKLVVNMIMGS--------------------MMATFSEGLLHSEKVGLD--PNVLVEVVSQGAI  281 (359)
Q Consensus       224 lg~~~~~~g~~~~~~~~kl~~n~~~~~--------------------~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~  281 (359)
                      .+.++....+.....|.|++.|...+.                    +..++.|+.+++++.|++  .+.+.+.+.....
T Consensus       152 ~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~  231 (294)
T 3g17_A          152 SQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQG  231 (294)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred             CCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Confidence            999999899988899999999885441                    245788999999999975  4445444442110


Q ss_pred             cchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213          282 SAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  341 (359)
Q Consensus       282 ~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~  341 (359)
                      ..   ....++|.++-... ...++..   .+.++++++++|+++|+++.++++++...+-
T Consensus       232 ~~---~~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~~  286 (294)
T 3g17_A          232 YP---DEMGTSMYYDIVHQQPLEVEAI---QGFIYRRAREHNLDTPYLDTIYSFLRAYQQN  286 (294)
T ss_dssp             SC---TTCCCHHHHHHHTTCCCSGGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cC---CCCCCcHHHHHHcCCCccHHHh---hhHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Confidence            00   00112333221111 1235555   7889999999999999999999999887653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.72  E-value=4.7e-17  Score=141.39  Aligned_cols=164  Identities=17%  Similarity=0.268  Sum_probs=120.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +.+|+|+|||+|+||.++|+.|.+.|++|++ ++|++++.+.+.+ .|+....+..+.++++|+|++++| +.....++ 
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~-   98 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIV-   98 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHH-
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHH-
Confidence            3458999999999999999999999999999 9999988887654 366555566667889999999997 77888888 


Q ss_pred             ccccccccCCCCCEEEeccCCCh------------HHHHHHHHHHHhcCCeee------cCCCCC-CCccccCCceEEEe
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDG------------DTSKLINGHIKATGASFL------EAPVSG-SKKPAEDGQLIFLA  207 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~------------~~~~~l~~~l~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~  207 (359)
                        +++.+ + +++++|+++.+.+            ...+.+.+.+..  ..++      ..++.. .+.....+..+++.
T Consensus        99 --~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~  172 (220)
T 4huj_A           99 --TQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAVLAADPDKGTGSRVLFLS  172 (220)
T ss_dssp             --TTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHHHTSCSBCSSCEEEEEEE
T ss_pred             --HHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHHhhhCcccCCCCeeEEEe
Confidence              66655 4 6889999987652            145566666642  2222      222222 22112223345556


Q ss_pred             cCCHHHHHHHHHHHHHhCCCeEEeCccChHHHH
Q 018213          208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM  240 (359)
Q Consensus       208 ~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~  240 (359)
                      +.+++..+.+.++++.+|++++++|+.+.+.++
T Consensus       173 g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~  205 (220)
T 4huj_A          173 GNHSDANRQVAELISSLGFAPVDLGTLAASGPI  205 (220)
T ss_dssp             ESCHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence            668899999999999999999999998766554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.71  E-value=2.8e-17  Score=141.95  Aligned_cols=172  Identities=18%  Similarity=0.266  Sum_probs=131.7

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C-------CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-------~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      |+|+||| +|.||+.+++.|.+.|++|++++|++++.+.+.+. +       +. ..+++++++++|+|++++| +..++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHH
Confidence            5799999 99999999999999999999999998776655432 2       33 3577788899999999997 67788


Q ss_pred             HHhcccccccccCCCCCEEEeccCCCh------------HHHHHHHHHHHhcCCeeecC--CCCCCCccc--cCCceEEE
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDG------------DTSKLINGHIKATGASFLEA--PVSGSKKPA--EDGQLIFL  206 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~------------~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~--~~~~~~~~  206 (359)
                      .++   +++.+.+ +++++++++++..            ...+.+.+.+.  +..++.+  |+.+.....  ..+...++
T Consensus        79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  152 (212)
T 1jay_A           79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP  152 (212)
T ss_dssp             HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred             HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence            887   6666556 4899999988543            22566776664  3566664  443322221  34455666


Q ss_pred             ecCC-HHHHHHHHHHHHHh-CCCeEEeCccChHHHHHHHHHHHHHHH
Q 018213          207 AAGD-KSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSM  251 (359)
Q Consensus       207 ~~g~-~~~~~~v~~ll~~l-g~~~~~~g~~~~~~~~kl~~n~~~~~~  251 (359)
                      ++++ ++..+.+.++|+.+ |..++++++.+.+.+.|.+.+.+....
T Consensus       153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~  199 (212)
T 1jay_A          153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM  199 (212)
T ss_dssp             EEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred             EECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence            6664 88999999999999 999999999999999999999877765

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.54  E-value=9.5e-19  Score=149.66  Aligned_cols=164  Identities=17%  Similarity=0.244  Sum_probs=117.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ..+|+|+|||+|+||+.+++.|.+.|++|++|+|+++ .+.+...|+... +++++++++|+|++++| +.+++.++   
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~-~~~~~~v~---   90 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVH-REHYDFLA---   90 (201)
Confidence            4568999999999999999999999999999999876 444544566655 77888899999999997 45677665   


Q ss_pred             ccccccCCCCCEEEeccCCChHH------HHHHHHHHHhcCCeeec-CCCCCCCccccCCc-----eEEEecCCHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDT------SKLINGHIKATGASFLE-APVSGSKKPAEDGQ-----LIFLAAGDKSLYNT  216 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~------~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~  216 (359)
                      . + ..+.++++|||++++.+..      .+.+.+.+...  ..+. .+..+.. ....+.     ..++++++++.++.
T Consensus        91 ~-l-~~~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~--~vvra~~n~~a~-~~~~g~l~g~~~~~~~g~~~~~~~~  165 (201)
T 2yjz_A           91 E-L-ADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA--HVVKAFNTISAW-ALQSGTLDASRQVFVCGNDSKAKDR  165 (201)
Confidence            2 3 3356789999999998632      23333333221  1211 1111110 111122     24667778889999


Q ss_pred             HHHHHHHhCCCeEEeCccChHHHHHHH
Q 018213          217 VAPLLDIMGKSRFYLGDVGNGAAMKLV  243 (359)
Q Consensus       217 v~~ll~~lg~~~~~~g~~~~~~~~kl~  243 (359)
                      +.++|+.+|.+++++|+.+.+.++|.+
T Consensus       166 v~~ll~~~G~~~~~~G~l~~a~~~e~~  192 (201)
T 2yjz_A          166 VMDIARTLGLTPLDQGSLVAAKEIENY  192 (201)
Confidence            999999999999999999988888854

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.69  E-value=2.9e-17  Score=147.70  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=121.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcE-EEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |+|+|||+|+||..+++.|... ++| .+|||++++.+.+.+ .+. .+.+++++++++|+|++|+| +.....++   .
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~-~~~~~~v~---~   76 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVP-DRYIKTVA---N   76 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSC-TTTHHHHH---T
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCC-hHHHHHHH---H
Confidence            6899999999999999999888 999 599999887776654 366 66678888889999999997 45577777   5


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc-CCceEEEecCCHHHHHHHHHHHHHhCCCe
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE-DGQLIFLAAGDKSLYNTVAPLLDIMGKSR  228 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~v~~ll~~lg~~~  228 (359)
                      ++.   +++++||+++.+.+...  +.+.  ..+......++.+++.... .....+.+.++++.++.++++++.+|.++
T Consensus        77 ~l~---~~~~ivi~~s~~~~~~~--l~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~  149 (276)
T 2i76_A           77 HLN---LGDAVLVHCSGFLSSEI--FKKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY  149 (276)
T ss_dssp             TTC---CSSCCEEECCSSSCGGG--GCSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCE
T ss_pred             Hhc---cCCCEEEECCCCCcHHH--HHHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCE
Confidence            553   67889999987655432  1111  0111111233444332222 23344556677778999999999999989


Q ss_pred             EEeCccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHh
Q 018213          229 FYLGDVGN---GAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN--VLVEVVS  277 (359)
Q Consensus       229 ~~~g~~~~---~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~--~~~~~~~  277 (359)
                      +++++.+.   ....+++.|.+.    ..+.|+..++.+.|++.+  .+.+++.
T Consensus       150 ~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~  199 (276)
T 2i76_A          150 FVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK  199 (276)
T ss_dssp             EECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            98886432   233345555433    345677788899999987  4444433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.69  E-value=2e-17  Score=151.06  Aligned_cols=255  Identities=15%  Similarity=0.058  Sum_probs=156.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCC----------HHHHhhcCCEEEEeeCChhHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS----------PDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~----------~~~~~~~aDivi~~~p~~~~~  141 (359)
                      |||+|||+|.||..+|..|. .|++|++++|++++.+.+.+.|+....+          ..+....+|+|++++ ++.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K~~~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV-KQHQL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC-CGGGH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe-CHHHH
Confidence            78999999999999999999 9999999999987777777666543211          123457899999999 48889


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCc--cccCCceEEEe-cCCHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKK--PAEDGQLIFLA-AGDKSLY  214 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~~~~  214 (359)
                      ..++   +.+.+ +.+++ ||.+.+|-... +.+.+.+...    ++.++++...++-.  ....+...+-. .+..+.+
T Consensus        81 ~~~l---~~l~~-~~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~  154 (307)
T 3ego_A           81 QSVF---SSLER-IGKTN-ILFLQNGMGHI-HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDR  154 (307)
T ss_dssp             HHHH---HHTTS-SCCCE-EEECCSSSHHH-HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGG
T ss_pred             HHHH---HHhhc-CCCCe-EEEecCCccHH-HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHH
Confidence            9888   66654 35566 88887776543 2343333221    11111111111111  11122222211 1223444


Q ss_pred             HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCHHHHH
Q 018213          215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM---------------------MATFSEGLLHSEKVGLDPNVLV  273 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~---------------------~~~~~Ea~~l~~~~Gi~~~~~~  273 (359)
                      +.+.+.|+..|..+....+.....|.|++.|...+.+                     ..++.|+..+++..  +++.+.
T Consensus       155 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~--~~~~~~  232 (307)
T 3ego_A          155 LNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE--NEEKAW  232 (307)
T ss_dssp             GTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--CHHHHH
T ss_pred             HHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--ChHHHH
Confidence            5555666667788888888888999999999866653                     34666777776543  233333


Q ss_pred             HHHhhccccchhhhhcccccccCCCC-CCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          274 EVVSQGAISAPMYSLKGPSMIESLYP-TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       274 ~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                      +.+....   .......++|.++-.. ....++..   .+.++++++++|+++|+++.++++++...+..
T Consensus       233 ~~~~~~~---~~~~~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gv~tP~~~~l~~li~~~e~~~  296 (307)
T 3ego_A          233 ERVQAVC---GQTKENRSSMLVDVIGGRQTEADAI---IGYLLKEASLQGLDAVHLEFLYGSIKALERNT  296 (307)
T ss_dssp             HHHHHHH---HHTTTCCCHHHHHHHHTCCCSHHHH---HHHHHHHHHHTTCCCHHHHHHHHHHHHTC---
T ss_pred             HHHHHHH---HhcCCCCchHHHHHHcCCcccHHHh---hhHHHHHHHHcCCCCcHHHHHHHHHHHHHhhh
Confidence            3222110   0000112233332111 11235665   78999999999999999999999998876553

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.66  E-value=7.9e-16  Score=133.11  Aligned_cols=164  Identities=17%  Similarity=0.251  Sum_probs=118.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      .+|+|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+.|+... +.+++++++|+|++++| +...+.++   +
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~-~~~~~~v~---~  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVF-REHYSSLC---S  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSC-GGGSGGGG---G
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCC-hHHHHHHH---H
Confidence            4588999999999999999999999999999999887776666676655 78888999999999997 55666665   3


Q ss_pred             cccccCCCCCEEEeccCCChHHH--------HHHHHHHHhcCCeeec--CCCC----CCCccccCCceEEEecCCHHHHH
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTS--------KLINGHIKATGASFLE--APVS----GSKKPAEDGQLIFLAAGDKSLYN  215 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~--------~~l~~~l~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~g~~~~~~  215 (359)
                       +...+ +++++|+++++.+...        +.+.+.+.  +..++.  .++.    .... ......+++.+++++.++
T Consensus       102 -l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~~~~~~~-~~g~~~~~~~g~~~~~~~  176 (215)
T 2vns_A          102 -LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAWTLQAGP-RDGNRQVPICGDQPEAKR  176 (215)
T ss_dssp             -GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHHHHHTCS-CSSCCEEEEEESCHHHHH
T ss_pred             -HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHhHhcccc-cCCceeEEEecCCHHHHH
Confidence             33334 8999999999987543        11112222  222222  1111    0101 111224567778999999


Q ss_pred             HHHHHHHHhCCCeEEeCccChHHHHHHH
Q 018213          216 TVAPLLDIMGKSRFYLGDVGNGAAMKLV  243 (359)
Q Consensus       216 ~v~~ll~~lg~~~~~~g~~~~~~~~kl~  243 (359)
                      .++++|+.+|.+++++++.+.+.+++..
T Consensus       177 ~v~~ll~~~G~~~~~~g~~~~~~~~e~~  204 (215)
T 2vns_A          177 AVSEMALAMGFMPVDMGSLASAWEVEAM  204 (215)
T ss_dssp             HHHHHHHHTTCEEEECCSGGGHHHHHHS
T ss_pred             HHHHHHHHcCCceEeecchhhhhHhhhh
Confidence            9999999999999999999988887744

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.9e-16  Score=143.44  Aligned_cols=260  Identities=11%  Similarity=0.013  Sum_probs=174.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--------cEEEEcCCccc-----hhHHHhC--------------CCccCCCH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--------DVTVWNRTKSK-----CDPLISL--------------GAKYQPSP  121 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--------~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~  121 (359)
                      .++.||+|||.|.+|+++|..|+.+|+        +|.+|.|+++.     .+.+...              ++....++
T Consensus        32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl  111 (391)
T 4fgw_A           32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL  111 (391)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence            345699999999999999999998775        59999998653     1222211              23456789


Q ss_pred             HHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-------HHHHHHHHHHHhcCCeeecCCCCCC
Q 018213          122 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGASFLEAPVSGS  194 (359)
Q Consensus       122 ~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~  194 (359)
                      +++++++|+|++++| +..++.++   +++.+.++++..+|+++-|-.       ...+.+.+.+. ..+.++..|.+..
T Consensus       112 ~~al~~ad~ii~avP-s~~~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~  186 (391)
T 4fgw_A          112 IDSVKDVDIIVFNIP-HQFLPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIAT  186 (391)
T ss_dssp             HHHHTTCSEEEECSC-GGGHHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHH
T ss_pred             HHHHhcCCEEEEECC-hhhhHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHH
Confidence            999999999999998 78999998   888888999999999987742       12334444432 2455677888877


Q ss_pred             CccccCCceEEEecCCH---------HHHHHHHHHHHHhCCCeEEeCc---cChHHHHHHH--------------HHHHH
Q 018213          195 KKPAEDGQLIFLAAGDK---------SLYNTVAPLLDIMGKSRFYLGD---VGNGAAMKLV--------------VNMIM  248 (359)
Q Consensus       195 ~~~~~~~~~~~~~~g~~---------~~~~~v~~ll~~lg~~~~~~g~---~~~~~~~kl~--------------~n~~~  248 (359)
                      +......+.+++.+.+.         ...+.++.+|..--++++...|   ...+.++|-+              .|.-.
T Consensus       187 EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakA  266 (391)
T 4fgw_A          187 EVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASA  266 (391)
T ss_dssp             HHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence            66666666655554332         2346688888877788888777   3344455533              36677


Q ss_pred             HHHHHHHHHHHHHHHHc---CCCHHHHH------HHHhhccccchhhhhccccccc-CCCC--------CCcchhHHHHH
Q 018213          249 GSMMATFSEGLLHSEKV---GLDPNVLV------EVVSQGAISAPMYSLKGPSMIE-SLYP--------TAFPLKHQQKD  310 (359)
Q Consensus       249 ~~~~~~~~Ea~~l~~~~---Gi~~~~~~------~~~~~~~~~s~~~~~~~~~~~~-~~~~--------~~~~~~~~~kd  310 (359)
                      +.+..++.|+.+++.+.   |-++.++.      |++-.+.. |. -..++..+.. +...        .+. +.++..-
T Consensus       267 ALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s-SR-Nr~~G~~lg~~G~~~~~~~~~~~~g~-v~EGv~t  343 (391)
T 4fgw_A          267 AIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG-GR-NVKVARLMATSGKDAWECEKELLNGQ-SAQGLIT  343 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS-SH-HHHHHHHHHHTCCCHHHHHHHHHTTC-CCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC-Cc-cHHHHHHHHhcCCCHHHHHHHHhCCC-EEehHHH
Confidence            77888999999999987   44444443      33332222 11 1111222321 1110        011 2344566


Q ss_pred             HHHHHHHHHhcCC--CchHHHHHHHHHH
Q 018213          311 LRLALGLAESVSQ--STPIAAAANELYK  336 (359)
Q Consensus       311 ~~~~~~~a~~~g~--~~p~~~~~~~~~~  336 (359)
                      ...+.++++++|+  ++|+++++++++.
T Consensus       344 a~~v~~l~~~~~v~~emPI~~~vy~IL~  371 (391)
T 4fgw_A          344 CKEVHEWLETCGSVEDFPLFEAVYQIVY  371 (391)
T ss_dssp             HHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            7888999999999  8999999999886

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.66  E-value=5.3e-16  Score=140.80  Aligned_cols=197  Identities=14%  Similarity=0.088  Sum_probs=141.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hCC--------------CccCCCHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG--------------AKYQPSPDE  123 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g--------------~~~~~~~~~  123 (359)
                      ..-.+|+|||+|.||..||..++..|++|++||++++..+...           +.|              +..+.++++
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            3347899999999999999999999999999999986543211           111              234568888


Q ss_pred             HhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCce
Q 018213          124 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQL  203 (359)
Q Consensus       124 ~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  203 (359)
                      .+++||+|+.++|...+++.-+|  +++-..+++++++-..+++.+.  ..+.+.+... -+++..+.|.+++..   ++
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~p-~r~ig~HffNP~~~m---~L  155 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLP--SKLFTGLAHV-KQCIVAHPVNPPYYI---PL  155 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCH--HHHHTTCTTG-GGEEEEEECSSTTTC---CE
T ss_pred             HhccCcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccc--hhhhhhccCC-CcEEEecCCCCcccc---ch
Confidence            99999999999999999987664  6677778899888755555444  3465555432 233333333332221   34


Q ss_pred             EEEecC---CHHHHHHHHHHHHHhCCCeEEe-Cc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213          204 IFLAAG---DKSLYNTVAPLLDIMGKSRFYL-GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  278 (359)
Q Consensus       204 ~~~~~g---~~~~~~~v~~ll~~lg~~~~~~-g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~  278 (359)
                      +-++.+   +++.++++..+++.+|++++.+ .+ +|      .+.|-+...   .+.|++.+.++.+.++++++.++..
T Consensus       156 VEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG------Fi~NRl~~~---~~~EA~~lv~eGvas~edID~~~~~  226 (319)
T 3ado_A          156 VELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG------FVLNRLQYA---IISEAWRLVEEGIVSPSDLDLVMSD  226 (319)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT------TTHHHHHHH---HHHHHHHHHHTTSSCHHHHHHHHHT
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC------EeHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            455554   7899999999999999988755 55 66      455544443   4679999999999999999999987


Q ss_pred             cccc
Q 018213          279 GAIS  282 (359)
Q Consensus       279 ~~~~  282 (359)
                      +.+.
T Consensus       227 g~g~  230 (319)
T 3ado_A          227 GLGM  230 (319)
T ss_dssp             THHH
T ss_pred             CCCC
Confidence            7554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.66  E-value=7.3e-16  Score=155.32  Aligned_cols=188  Identities=15%  Similarity=0.119  Sum_probs=133.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVA  125 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~  125 (359)
                      ..++|+|||+|.||..||..|+..|++|++||++++..+..           .+.|             +....++ +.+
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            34789999999999999999999999999999998766542           2223             2344566 667


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEE
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  205 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (359)
                      ++||+||+++|.+.+++..++  .++.+.+++++++++.+++.+..  .+.+.+.. .-+++..+.+.+..   ..+++.
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-~~~~ig~hf~~P~~---~~~lve  463 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALKR-PENFVGMHFFNPVH---MMPLVE  463 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCSC-GGGEEEEECCSSTT---TCCEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcC-ccceEEEEccCCcc---cCceEE
Confidence            899999999998877766443  56777788999988555444432  34444321 11334322222221   223444


Q ss_pred             EecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213          206 LAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  276 (359)
Q Consensus       206 ~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~  276 (359)
                      ++.+   +++.++.+.++++.+|+.++++++ +|.     ++++.+ .   ..++|++.++++ |++++++++++
T Consensus       464 vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril-~---~~~~Ea~~l~~~-G~~~~~id~~~  528 (715)
T 1wdk_A          464 VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVL-F---PYFGGFAKLVSA-GVDFVRIDKVM  528 (715)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHH-H---HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHH-H---HHHHHHHHHHHC-CCCHHHHHHHH
Confidence            4444   799999999999999999999988 441     333333 2   357899999997 99999999998

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.64  E-value=1.5e-15  Score=140.35  Aligned_cols=193  Identities=16%  Similarity=0.132  Sum_probs=128.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++|+|+|||+|.||.++|+.|...|++|++++|++++ .+...+.|+... +++++++++|+|++|+| +.....++  
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp-~~~~~~v~--   89 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTP-DEFQGRLY--   89 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSC-HHHHHHHH--
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCC-cHHHHHHH--
Confidence            56689999999999999999999999999999998765 444555677666 88899999999999998 56668888  


Q ss_pred             cc-cccccCCCCCEEEeccCCChHHHHHHHHHHH-hcCCeeec-CCCCCCCcc------ccCCceEEEe---cCCHHHHH
Q 018213          148 KH-GAASGMGPGKGYVDVSTVDGDTSKLINGHIK-ATGASFLE-APVSGSKKP------AEDGQLIFLA---AGDKSLYN  215 (359)
Q Consensus       148 ~~-~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~-~~~~~~~~-~~~~~~~~~------~~~~~~~~~~---~g~~~~~~  215 (359)
                       + ++.+.++++++|++++.  . .. .+ +.+. ..++.++. +| .++...      ...+...+++   ..+.+..+
T Consensus        90 -~~~i~~~l~~~~ivi~~~g--v-~~-~~-~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~  162 (338)
T 1np3_A           90 -KEEIEPNLKKGATLAFAHG--F-SI-HY-NQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKN  162 (338)
T ss_dssp             -HHHTGGGCCTTCEEEESCC--H-HH-HT-TSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHH
T ss_pred             -HHHHHhhCCCCCEEEEcCC--c-hh-HH-HhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHH
Confidence             6 78788999999998743  2 22 22 2222 23455554 45 333221      1124444333   23677889


Q ss_pred             HHHHHHHHhCC-C--eEEeCccChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018213          216 TVAPLLDIMGK-S--RFYLGDVGNGAAMKLVVN-MIMGSMMATFSEGLLHSEKVGLDPNVL  272 (359)
Q Consensus       216 ~v~~ll~~lg~-~--~~~~g~~~~~~~~kl~~n-~~~~~~~~~~~Ea~~l~~~~Gi~~~~~  272 (359)
                      .+..+++.+|. +  ++.+.............+ .+.+.+...+..++..+.+.|++++..
T Consensus       163 ~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          163 VALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             HHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999998 4  665554332333334333 222223333334444446889998765

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.63  E-value=2e-15  Score=152.19  Aligned_cols=187  Identities=14%  Similarity=0.118  Sum_probs=131.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-------------CccCCCHHHHhh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA  126 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~  126 (359)
                      .++|+|||+|.||..||..|+..|++|++||++++..+...+           .|             +....++ +.++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  390 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR  390 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence            468999999999999999999999999999999876654311           12             2334566 5678


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  206 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (359)
                      +||+||+++|.+.+++..++  .++.+.+++++++++.+++.+..  .+.+.+.. .-.+++.+.+.++.   ..+++.+
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-p~~~iG~hf~~P~~---~~~lvev  462 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN--KIGERTKS-QDRIVGAHFFSPAH---IMPLLEI  462 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHTTTCSC-TTTEEEEEECSSTT---TCCEEEE
T ss_pred             CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcC-CCCEEEecCCCCcc---cCceEEE
Confidence            99999999998877765443  56777788999887554444432  34443322 11233322222211   1234445


Q ss_pred             ecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213          207 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  276 (359)
Q Consensus       207 ~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~  276 (359)
                      +.+   +++.++.+.++++.+|+.++++++ +|      .+.|-+..   ..++|++.++++ |++++++++++
T Consensus       463 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G------fi~Nril~---~~~~Ea~~l~~~-G~~~e~id~~~  526 (725)
T 2wtb_A          463 VRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTG------FAVNRMFF---PYTQAAMFLVEC-GADPYLIDRAI  526 (725)
T ss_dssp             EECSSCCHHHHHHHHHHHHHTTCEEEEEESSTT------TTHHHHHH---HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHhCCEEEEECCCcc------HHHHHHHH---HHHHHHHHHHHC-CCCHHHHHHHH
Confidence            554   899999999999999999999988 44      23343333   357899999998 99999999998

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.63  E-value=3.4e-15  Score=129.03  Aligned_cols=159  Identities=14%  Similarity=0.166  Sum_probs=120.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ...|+|+|||+|.||.++|+.|.+.|++|++|++.                  ++ ++++|  ++++|. ..+..++   
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~-~ai~~vl---   58 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDA-HGVEGYV---   58 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECS-SCHHHHH---
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcH-HHHHHHH---
Confidence            34589999999999999999999999999999982                  12 56789  899985 4888888   


Q ss_pred             ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  227 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~  227 (359)
                      +++.+.+++++++++++.....   .+.+.+...+..|++ +|+++.        ...+.+++++.++.++++++.+|.+
T Consensus        59 ~~l~~~l~~g~ivvd~sgs~~~---~vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~  127 (232)
T 3dfu_A           59 EKLSAFARRGQMFLHTSLTHGI---TVMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGS  127 (232)
T ss_dssp             HHHHTTCCTTCEEEECCSSCCG---GGGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhcCCCCEEEEECCcCHH---HHHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCE
Confidence            7787888999999998644332   223334456888886 888653        2445566888999999999999999


Q ss_pred             eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018213          228 RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV  265 (359)
Q Consensus       228 ~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~  265 (359)
                      ++.+++.........+.  ..+.++.+..++..+.++.
T Consensus       128 vv~~~~~~hd~~~AAvs--h~nhLv~L~~~A~~ll~~~  163 (232)
T 3dfu_A          128 IVEIADDKRAQLAAALT--YAGFLSTLQRDASYFLDEF  163 (232)
T ss_dssp             ECCCCGGGHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            99988865444432222  3666777778888877554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.62  E-value=4.3e-15  Score=142.82  Aligned_cols=189  Identities=16%  Similarity=0.220  Sum_probs=129.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-----------CccCCCHHHHhhc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-----------AKYQPSPDEVAAS  127 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~~~~~~~~  127 (359)
                      ..++|+|||+|.||..+|..|+..|++|++||++++..+...+           .|           .....++ +.+++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            3478999999999999999999999999999999876554322           11           1234566 46789


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      ||+||+++|...+++..++  +++.+.++++++|++.+.+.+. . .+.+.+.. .-++++.+.+.+..   ..+++.++
T Consensus       115 aDlVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~snTs~~~~-~-~la~~~~~-~~~~ig~hf~~P~~---~~~lvevv  186 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNV-D-DIASSTDR-PQLVIGTHFFSPAH---VMRLLEVI  186 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH-H-HHHTTSSC-GGGEEEEEECSSTT---TCCEEEEE
T ss_pred             CCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCcCH-H-HHHHHhcC-CcceEEeecCCCcc---cceeEEEe
Confidence            9999999997665554332  5666778899998864333332 2 56554432 12233322222111   22344444


Q ss_pred             c---CCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          208 A---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       208 ~---g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                      .   ++++.++.+.++++.+|+.++++++ ++      .+.|.+...   .++|++.++++ |++++++++++.
T Consensus       187 ~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~g------fi~Nrll~~---~~~ea~~l~~~-G~~~~~id~~~~  250 (463)
T 1zcj_A          187 PSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRMLAP---YYNQGFFLLEE-GSKPEDVDGVLE  250 (463)
T ss_dssp             ECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTT------TTHHHHHHH---HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCEEEEECCCcc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence            4   4899999999999999999999987 44      133443333   24799988887 899999999987

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.47  E-value=9e-13  Score=123.87  Aligned_cols=203  Identities=15%  Similarity=0.100  Sum_probs=124.3

Q ss_pred             CCC-CeEEEEcCChhhHHHHHHHHHC------CCcEEEEcCCcc-chhHHHhCCCcc----CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELP-GRIGFLGMGIMGTPMAQNLLKA------GCDVTVWNRTKS-KCDPLISLGAKY----QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~-~~igiiG~G~iG~~ia~~l~~~------g~~V~~~d~~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivi~~~p  136 (359)
                      +++ ++|||||+|+||.++|+.|.+.      |++|++.+++.+ ..+...+.|+..    ..++.+++++||+|++++|
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP  130 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLIS  130 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSC
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCC
Confidence            788 9999999999999999999998      999987766543 444455667765    2588999999999999998


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHH--HHHhcCCeeec-CCCCCCCc-------c---ccCCce
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING--HIKATGASFLE-APVSGSKK-------P---AEDGQL  203 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~--~l~~~~~~~~~-~~~~~~~~-------~---~~~~~~  203 (359)
                      . .....++   +++.+.|++|++|+. +.|..  ...+.+  .....++.++- +|......       .   ...|..
T Consensus       131 ~-~~~~eVl---~eI~p~LK~GaILs~-AaGf~--I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~  203 (525)
T 3fr7_A          131 D-AAQADNY---EKIFSHMKPNSILGL-SHGFL--LGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGIN  203 (525)
T ss_dssp             H-HHHHHHH---HHHHHHSCTTCEEEE-SSSHH--HHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCC
T ss_pred             h-HHHHHHH---HHHHHhcCCCCeEEE-eCCCC--HHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCcc
Confidence            4 4445677   678899999998643 34422  222222  01123445543 44332221       0   113333


Q ss_pred             -EEEecC--CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213          204 -IFLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-V-NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  278 (359)
Q Consensus       204 -~~~~~g--~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~-~-n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~  278 (359)
                       .+.+..  +.+..+.+..++..+|...+.-.......-..+. . ..+.+...+++.-+...+.+.|++++..+....+
T Consensus       204 ~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~q  283 (525)
T 3fr7_A          204 SSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVE  283 (525)
T ss_dssp             EEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence             333322  4578899999999999875332222111111111 1 1122222223333334458899999887766543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.45  E-value=1.5e-12  Score=123.26  Aligned_cols=266  Identities=10%  Similarity=0.022  Sum_probs=148.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHH-CCCcEEEEc---CCccchhHH-HhCC---------C---------c-cCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK-AGCDVTVWN---RTKSKCDPL-ISLG---------A---------K-YQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~-~g~~V~~~d---~~~~~~~~~-~~~g---------~---------~-~~~~~~~~~~~  127 (359)
                      |+|+|||+|.||..+|..|+. .|++|++|+   |++++.+.+ .+.+         .         . .+.++++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            689999999999999999988 599999999   766665553 3222         1         1 44578888899


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCeeec---CCCCCCC--cc---
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLE---APVSGSK--KP---  197 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~---~~~~~~~--~~---  197 (359)
                      +|+|++++| +...+.++   +++.+.++++++|++...+..... ...+.+.+  ....+.+   .+.....  +.   
T Consensus        83 aD~Vilav~-~~~~~~v~---~~l~~~l~~~~ivv~~~~~~G~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v  157 (404)
T 3c7a_A           83 ADVVILTVP-AFAHEGYF---QAMAPYVQDSALIVGLPSQAGFEF-QCRDILGDKAAAVSMMSFETLPWACRIKEFGRKV  157 (404)
T ss_dssp             CSEEEECSC-GGGHHHHH---HHHTTTCCTTCEEEETTCCTTHHH-HHHHHHGGGGGTSEEEEESSCSEEEEEEETTTEE
T ss_pred             CCEEEEeCc-hHHHHHHH---HHHHhhCCCCcEEEEcCCCccHHH-HHHHHHHhcCCCeEEEEecCchHhhcccCCCcEE
Confidence            999999997 66788888   788888888999998533332121 11223322  1211221   2221110  11   


Q ss_pred             --ccCCceEEEe--cCCHHHHHHHHHHHHHhCCC--eEEeCcc-ChH-------HHHHHH------------------H-
Q 018213          198 --AEDGQLIFLA--AGDKSLYNTVAPLLDIMGKS--RFYLGDV-GNG-------AAMKLV------------------V-  244 (359)
Q Consensus       198 --~~~~~~~~~~--~g~~~~~~~v~~ll~~lg~~--~~~~g~~-~~~-------~~~kl~------------------~-  244 (359)
                        ......+.+.  .++.+..+.+.+++..++..  +.+..+. +..       ...-.+                  . 
T Consensus       158 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  237 (404)
T 3c7a_A          158 EVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFYQG  237 (404)
T ss_dssp             EEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTTCTTHHHHHHHHHHTTCCSCCBSSCCBSGGG
T ss_pred             EEEEECceEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCCEeeeeecCCceeccHHHHHHHHhhhcCCCCCCCccccC
Confidence              0011111111  11113345677778887763  3333332 110       000011                  1 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHc-----CCCHH---HHHHHHhhccc-----cchhhhhcccc-cccC------------
Q 018213          245 --NMIMGSMMATFSEGLLHSEKV-----GLDPN---VLVEVVSQGAI-----SAPMYSLKGPS-MIES------------  296 (359)
Q Consensus       245 --n~~~~~~~~~~~Ea~~l~~~~-----Gi~~~---~~~~~~~~~~~-----~s~~~~~~~~~-~~~~------------  296 (359)
                        +.....+..++.|..+++++.     |+++.   .+.+.+....+     .+.+.+...+. +.++            
T Consensus       238 ~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~~~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P~~~te~~~  317 (404)
T 3c7a_A          238 IDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHPVKAVDGGV  317 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTCCCHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCCEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCCCCCcCCCc
Confidence              133455667889999999999     98762   23333322111     11111110000 0000            


Q ss_pred             --CCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213          297 --LYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  342 (359)
Q Consensus       297 --~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  342 (359)
                        +...+...+....-++.+.++++++|+++|+++++++++.....+.
T Consensus       318 ~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~~~~~~~  365 (404)
T 3c7a_A          318 APDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQEKIGKE  365 (404)
T ss_dssp             EECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCC
T ss_pred             cCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHHHHhCcc
Confidence              0011111110101256789999999999999999999999887653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.44  E-value=4.4e-14  Score=134.40  Aligned_cols=110  Identities=15%  Similarity=0.062  Sum_probs=93.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|||+|.||+.+|+.+..+|++|++||+++.+.......|+.. .++++++++||+|++|+    .+++++  +
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~----~t~~lI--~  327 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCT----GNVDVI--K  327 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECC----SSSSSB--C
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECC----Chhhhc--C
Confidence            7889999999999999999999999999999999986543444556654 48999999999999996    455666  5


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHHH--HHHhcCCe
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLING--HIKATGAS  185 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~--~l~~~~~~  185 (359)
                      .+.++.||+|++|||++|+.+ ++++++.+  +++++.+.
T Consensus       328 ~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~  367 (479)
T 1v8b_A          328 LEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK  367 (479)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE
T ss_pred             HHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe
Confidence            677889999999999999999 79999998  77665443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.43  E-value=2.2e-13  Score=123.77  Aligned_cols=114  Identities=19%  Similarity=0.280  Sum_probs=89.5

Q ss_pred             ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      .++.+++|+|||+|.||+.+++.+..+|++|++|||++++.+.+.+.|+..  ..+++++++++|+|++|+|.     ++
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~  227 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MI  227 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CC
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hh
Confidence            348889999999999999999999999999999999987665555556543  35788999999999999985     34


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                      +  +++.+..|++++++||+++++....  + +.....|+.+++.|
T Consensus       228 i--~~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~p  268 (300)
T 2rir_A          228 L--NQTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAP  268 (300)
T ss_dssp             B--CHHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred             h--CHHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECC
Confidence            4  3456678999999999999754432  2 44455677776655

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.42  E-value=3.3e-14  Score=135.70  Aligned_cols=109  Identities=15%  Similarity=0.040  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++|+|||+|.||+.+|+.+..+|++|++||+++.+.......|+.. .+++++++++|+|++++    .+++++  +
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~----~t~~lI--~  347 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTAT----GNYHVI--N  347 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECS----SSSCSB--C
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECC----Cccccc--C
Confidence            7889999999999999999999999999999999986543334456654 48999999999999998    355666  5


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCe
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGAS  185 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~  185 (359)
                      ++.++.||+|++|||++|+.. +++++| ++++++.+.
T Consensus       348 ~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~  384 (494)
T 3d64_A          348 HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK  384 (494)
T ss_dssp             HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE
T ss_pred             HHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc
Confidence            677889999999999999999 488888 787765443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.40  E-value=3.6e-13  Score=121.88  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=87.2

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++.+++|+|||+|.||+.+++.+..+|++|++|||++++.+.+.+.|+...  .+++++++++|+|++|+|.     +++
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i  226 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVV  226 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCB
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHh
Confidence            478899999999999999999999999999999999876555555566542  4788889999999999985     344


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                        +++.+..|+++.++||+++++....  + +..+..|+.++..|
T Consensus       227 --~~~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~  266 (293)
T 3d4o_A          227 --TANVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVP  266 (293)
T ss_dssp             --CHHHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred             --CHHHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECC
Confidence              3455678999999999999754331  2 44455566665443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.35  E-value=4.9e-12  Score=127.11  Aligned_cols=189  Identities=16%  Similarity=0.237  Sum_probs=134.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh---------------C-------CCccCCCHHHHhhcC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---------------L-------GAKYQPSPDEVAASC  128 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---------------~-------g~~~~~~~~~~~~~a  128 (359)
                      -++|+|||+|.||..||..++..|++|+++|++++..+...+               .       .+....+.++ +++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            378999999999999999999999999999998875432211               0       1223445544 6899


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  208 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (359)
                      |+||.++|...++++-+|  +++-+.+++++++-..+++-+++  .+.+.+.. .-++++.+.|.+++..   +++-++.
T Consensus       395 DlVIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i~--~ia~~~~~-p~r~ig~HFfnP~~~m---~LVEvi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNVD--DIASSTDR-PQLVIGTHFFSPAHVM---RLLEVIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHHTTSSC-GGGEEEEECCSSTTTC---CEEEEEE
T ss_pred             CEEEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCChH--HHHhhcCC-ccccccccccCCCCCC---ceEEEec
Confidence            999999999999987664  67777789999888655554443  45555432 2245554444433322   3444444


Q ss_pred             C---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213          209 G---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  278 (359)
Q Consensus       209 g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~  278 (359)
                      +   +++.++.+..+.+.+|+.++.+.+ +|      .+.|-+...   .+.|++.++++ |.+++++++++..
T Consensus       467 g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG------Fi~NRi~~~---~~~ea~~l~~e-G~~~~~id~a~~~  530 (742)
T 3zwc_A          467 SRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRMLAP---YYNQGFFLLEE-GSKPEDVDGVLEE  530 (742)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEECCCSTT------TTHHHHHHH---HHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccCCCCC------ccHHHHhhH---HHHHHHHHHHc-CCCHHHHHHHHHH
Confidence            3   899999999999999999999988 65      444544333   35688887776 7888888887753

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.34  E-value=1.6e-12  Score=121.57  Aligned_cols=103  Identities=13%  Similarity=0.039  Sum_probs=85.6

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++.+++|+|+|+|.||+.+|+.|..+|++|+++|+++.+.......|.... +++++++++|+|+++.    .+.+++  
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~----gt~~iI--  280 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTT----GNDDII--  280 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECS----SCSCSB--
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECC----CCcCcc--
Confidence            478899999999999999999999999999999999866555555676554 8999999999999754    345666  


Q ss_pred             cccccccCCCCCEEEeccCCCh-HHHHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDG-DTSKLING  177 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~  177 (359)
                      +.+.++.|++|++|||++++.+ ++.+++.+
T Consensus       281 ~~e~l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             CHHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            5678899999999999999986 56655554

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.32  E-value=1.1e-12  Score=122.25  Aligned_cols=102  Identities=18%  Similarity=0.063  Sum_probs=84.9

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++.+++++|||+|.||+.+|+.+..+|++|+++++++.+.......|+... +++++++++|+|+.+.+    +++++  
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI--  316 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI--  316 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB--
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc--
Confidence            488999999999999999999999999999999998765444445576654 89999999999998763    35667  


Q ss_pred             cccccccCCCCCEEEeccCCCh-HHHHHHH
Q 018213          148 KHGAASGMGPGKGYVDVSTVDG-DTSKLIN  176 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~  176 (359)
                      +++.+..||++++|||++++.. ++.++|.
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~  346 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALR  346 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHH
Confidence            6778899999999999999986 6665664

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.30  E-value=3.5e-14  Score=129.62  Aligned_cols=111  Identities=17%  Similarity=0.292  Sum_probs=90.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CC-cEEEEcCCccchhHHHhC-C--CccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLISL-G--AKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~-~V~~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ...++|+|||+|.||..+++.|... |+ +|.+|||++++.+.+.+. +  +..+.+++++++++|+|++|+|.   .+.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCc
Confidence            4568999999999999999999765 76 899999999888777654 5  66778999999999999999984   234


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++   ..  +.+++|++|+++++..+.. .++.+.+.+++..|++
T Consensus       210 v~---~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD  248 (312)
T 2i99_A          210 IL---FG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVD  248 (312)
T ss_dssp             CB---CG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEES
T ss_pred             cc---CH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEEC
Confidence            44   22  5688999999998887754 5666777777888998

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.22  E-value=1.7e-12  Score=113.74  Aligned_cols=158  Identities=15%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcE-EEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |||||||+|.||+.+++.+...|+++ .+||+++ +.+.       .+.++++++ .++|+|++|+|.. .....+    
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~-~~~~~~----   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQ-AVKDYA----   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHH-HHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHH-HHHHHH----
Confidence            57999999999999999999889997 6899885 3221       567899998 6899999999844 444443    


Q ss_pred             cccccCCCCCEEEeccCCChHHH---HHHHHHHHhcCCe-eecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTS---KLINGHIKATGAS-FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG  225 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~---~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg  225 (359)
                        ...++.|..+++.+.+.+...   +++.+..++.|.. +++.++.+.......+..    +++...+....+.++..+
T Consensus        68 --~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  141 (236)
T 2dc1_A           68 --EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFGR  141 (236)
T ss_dssp             --HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTTS
T ss_pred             --HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcCc
Confidence              245678999999887764433   6787877777776 677887776543332321    111000011111233456


Q ss_pred             CCeEEeCccChH-HHHHHHHHHHH
Q 018213          226 KSRFYLGDVGNG-AAMKLVVNMIM  248 (359)
Q Consensus       226 ~~~~~~g~~~~~-~~~kl~~n~~~  248 (359)
                      .++++.|+.+.+ ..++...|...
T Consensus       142 ~~~~~~G~~~~~~~~~~~~~n~~~  165 (236)
T 2dc1_A          142 KGVIFEGSASEAAQKFPKNLNVAA  165 (236)
T ss_dssp             CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred             ceEEEeccHHHHHHHCCchHHHHH
Confidence            667777774322 24444444443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.21  E-value=1.3e-11  Score=115.16  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=79.8

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      .+.+++|+|+|+|.||+.+|+.+..+|++|+++|+++.+.......|... .+++++++++|+|++| +   .+.+++  
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a-t---gt~~lI--  289 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC-T---GNKNVV--  289 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC-S---SCSCSB--
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC-C---CCcccC--
Confidence            37889999999999999999999999999999999886554444556554 4899999999999996 2   345667  


Q ss_pred             cccccccCCCCCEEEeccCCCh
Q 018213          148 KHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      +.+.+..|+++++|+|++++.+
T Consensus       290 ~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          290 TREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             CHHHHHHSCTTEEEEECSSTTT
T ss_pred             CHHHHHhcCCCcEEEEecCCCc
Confidence            5577889999999999999976

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.12  E-value=1.6e-10  Score=92.11  Aligned_cols=108  Identities=21%  Similarity=0.272  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      .+.++|+|||+    |.||..+++.|.+.|++|+.++++.++.     .|...+.+++|+....|++++++| ++....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v   85 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV   85 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence            45578999999    9999999999999999987777764332     478888899999889999999998 7888888


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  190 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  190 (359)
                      +   +++.+ ...+.++++.++.    .+++.+.+++.|+.+++..
T Consensus        86 ~---~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpn  123 (138)
T 1y81_A           86 A---KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGR  123 (138)
T ss_dssp             H---HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSC
T ss_pred             H---HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCC
Confidence            8   55554 4556677776553    4678888888999999743

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.12  E-value=5.3e-11  Score=106.57  Aligned_cols=111  Identities=23%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhH--HHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~--~~~~~  145 (359)
                      +.+++|+|||+|.||++++..|...|++|++++|++++.+.+.+. |+....+++++++++|+||+++|.+..  +...+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i  206 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF  206 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC
Confidence            667899999999999999999999999999999998777666543 555555788888999999999986532  11122


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                         .  .+.++++.+++|++. .   ...+.+..++.|+.+++
T Consensus       207 ---~--~~~l~~g~~viDv~~-~---~t~ll~~a~~~g~~~v~  240 (275)
T 2hk9_A          207 ---N--YDLIKKDHVVVDIIY-K---ETKLLKKAKEKGAKLLD  240 (275)
T ss_dssp             ---C--GGGCCTTSEEEESSS-S---CCHHHHHHHHTTCEEEC
T ss_pred             ---C--HHHcCCCCEEEEcCC-C---hHHHHHHHHHCcCEEEC
Confidence               1  245789999999987 2   22355555666766654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.12  E-value=1.5e-10  Score=103.06  Aligned_cols=111  Identities=20%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhH--HHHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~--~~~~  144 (359)
                      ++++ +|+|||+|.||+++++.|...|++|++++|++++.+.+.+. +.. ..+++++ +++|+|++|+|.+..  +...
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~  190 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASP  190 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence            3677 99999999999999999999999999999998776665543 444 4577888 999999999986531  1122


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +   .  .+.++++++++|++..+. .. .+.+.+++.|+.+++
T Consensus       191 l---~--~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~~v~  227 (263)
T 2d5c_A          191 L---P--AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLKVQT  227 (263)
T ss_dssp             S---C--GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred             C---C--HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCEEEC
Confidence            3   1  356789999999987643 33 477777777766664

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.08  E-value=2.1e-10  Score=109.87  Aligned_cols=102  Identities=13%  Similarity=0.089  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ..+++|+|||+|.||+.+|+.++.+|++|+++|+++.+.+...+.|+.. .+++++++++|+|+.|++..    +++  +
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~----~~i--~  344 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNK----DII--M  344 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSS----CSB--C
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCH----HHH--H
Confidence            6789999999999999999999999999999999988766666778764 47889999999999998633    244  2


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLING  177 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~  177 (359)
                      .+.+..|+++.+++|++++.. ++..++..
T Consensus       345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~  374 (494)
T 3ce6_A          345 LEHIKAMKDHAILGNIGHFDNEIDMAGLER  374 (494)
T ss_dssp             HHHHHHSCTTCEEEECSSSGGGBCHHHHHH
T ss_pred             HHHHHhcCCCcEEEEeCCCCCccCHHHHHH
Confidence            356678999999999999876 55666655

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.07  E-value=2.6e-11  Score=113.40  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCcc------CCCHHHHhhcCCEEEEeeCChh-H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-S  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivi~~~p~~~-~  140 (359)
                      +.+++|+|+|+|.||+.+++.++.+|++|+++|+++++.+.+.+ .|...      ..+++++++++|+||.+++.+. .
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~  245 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAK  245 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            67799999999999999999999999999999999887666655 34431      2356678889999999885333 4


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +..++  .++.++.|+++.++||++.
T Consensus       246 t~~li--~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          246 APKLV--SNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCB--CHHHHTTSCTTCEEEEGGG
T ss_pred             Cccee--cHHHHhcCCCCcEEEEEec
Confidence            44554  3566788999999999983

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.01  E-value=3e-10  Score=104.88  Aligned_cols=96  Identities=22%  Similarity=0.355  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC-------------------------CHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-------------------------SPDE  123 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-------------------------~~~~  123 (359)
                      ..+.+|+|||+|.||...++.+..+|.+|+++|+++++.+.+.+.|.+...                         ++++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            467899999999999999999999999999999999888877776665432                         4567


Q ss_pred             HhhcCCEEEEeeCCh-hHHHHHhcccccccccCCCCCEEEeccC
Q 018213          124 VAASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       124 ~~~~aDivi~~~p~~-~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .++++|+||.++..+ .....++  +++.++.|++|++|||++.
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lv--t~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLV--TAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCB--CHHHHHTSCTTCEEEETTG
T ss_pred             HHhcCCEEEECCCCCCcccceee--cHHHHhcCCCCcEEEEEeC
Confidence            889999999886222 2233445  5677889999999999963

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.98  E-value=4.7e-10  Score=90.25  Aligned_cols=89  Identities=17%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCc--cCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++|+|||+|.||+.+++.|...|++|++++|++++.+.+.+. +..  ...+++++++++|+|+.++|.+.   .++  
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~---~~~--   95 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT---PIV--   95 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS---CSB--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC---cEe--
Confidence            6899999999999999999999999999999998887665442 443  45688899999999999998652   223  


Q ss_pred             cccccccCCCCCEEEeccCC
Q 018213          148 KHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~  167 (359)
                       .  ...++++.+++|++..
T Consensus        96 -~--~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           96 -E--ERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             -C--GGGCCTTCEEEECCSS
T ss_pred             -e--HHHcCCCCEEEEccCC
Confidence             1  1457789999998653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.97  E-value=6e-10  Score=103.70  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-----------------------------C
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----------------------------P  119 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------~  119 (359)
                      ..+.+|+|||+|.+|..+++.+..+|.+|+++|+++.+.+.+.+.|....                             .
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            56789999999999999999999999999999999988777776665421                             1


Q ss_pred             CHHHHhhcCCEEEEeeCCh-hHHHHHhcccccccccCCCCCEEEeccC
Q 018213          120 SPDEVAASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       120 ~~~~~~~~aDivi~~~p~~-~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +++++++++|+||.++..+ .....++  +++.+..|++|++|||++.
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lv--t~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLV--TREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCB--CHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEe--cHHHHhcCCCCCEEEEEeC
Confidence            4677889999999886222 1233445  5677889999999999963

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.95  E-value=5.5e-10  Score=89.88  Aligned_cols=105  Identities=17%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             CCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCc--cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTK--SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~--~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      .++|+|||+    |+||..+++.|.+.|++|+.++++.  ++.     .|...+.+++|+....|++++++| +..+..+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v   86 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRN-SEAAWGV   86 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSC-STHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHH
Confidence            477999999    8999999999999999987777764  322     477788889998888999999998 6788888


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      +   +++.+ ...+.++++.++.    .+++.+.+++.|+.+++.
T Consensus        87 ~---~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igp  123 (145)
T 2duw_A           87 A---QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMD  123 (145)
T ss_dssp             H---HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECS
T ss_pred             H---HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcC
Confidence            8   55554 4456677765433    568888888999999963

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.88  E-value=1.7e-09  Score=101.76  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC---------------------------CH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP---------------------------SP  121 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~~  121 (359)
                      +.+.+|+|||+|.+|..+++.+..+|++|+++|+++++.+.+.+.|...+.                           ++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            677999999999999999999999999999999999887777666765432                           25


Q ss_pred             HHHhhcCCEEEEe--eCChhHHHHHhcccccccccCCCCCEEEecc
Q 018213          122 DEVAASCDVTFAM--LADPESAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       122 ~~~~~~aDivi~~--~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ++++..+|+||.+  +|. .....++  +++.+..|++|.+|||++
T Consensus       250 ~e~~~~aDvVI~~~~~pg-~~ap~li--~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPG-KPAPKLI--TREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHCSEEEECCCCTT-SCCCCCB--CHHHHHTSCTTCEEEETT
T ss_pred             HHHhCCCCEEEECCccCC-CCCCeee--CHHHHhcCCCCcEEEEEc
Confidence            6778889999999  442 1233444  345667899999999998

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.85  E-value=1.1e-08  Score=93.00  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHH-CCCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLK-AGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~-~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++++||||||+|.||.. ++..+.+ .++++. ++|+++++.+.+.+ .|+..++++++++.+.|+|++|+|...+.+.+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~   83 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII   83 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH
Confidence            55689999999999996 8888876 467776 79999988777654 37777889999999999999999866554444


Q ss_pred             hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ..++.|..++..  ....+.+.+++.+..++.|+.+.
T Consensus        84 ~-------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~  121 (308)
T 3uuw_A           84 K-------ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLM  121 (308)
T ss_dssp             H-------HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEE
T ss_pred             H-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            3       234556655532  44567778888888887776543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.85  E-value=3.6e-09  Score=97.08  Aligned_cols=111  Identities=15%  Similarity=0.161  Sum_probs=83.6

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++.+++|+|+|+|++|+.+|+.+..+|++|+++|+++++.+...+.+.+.. +.++++. +|||++-|     .+.+++ 
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I-  244 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVI-  244 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCB-
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhc-
Confidence            488999999999999999999999999999999998754222333466555 6678777 89999753     344555 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       +.+.++.|+ ..+|++.++++..++++ .+.|.++++.++.
T Consensus       245 -~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv~P  283 (355)
T 1c1d_A          245 -TTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILYAP  283 (355)
T ss_dssp             -CHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEECC
T ss_pred             -CHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEEEC
Confidence             444455665 68999999988766555 5888888876654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.82  E-value=2.4e-08  Score=79.34  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc----CCCHHHH----hhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY----QPSPDEV----AASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~----~~~~~~~----~~~aDivi~~~p~~~~  140 (359)
                      ++|+|+|+|+|.+|+.+++.|.+.|++|+++|+++++.+.+.+. ++..    ..+.+.+    +.++|+|++++|.+. 
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~-   81 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE-   81 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch-
Confidence            35889999999999999999999999999999998777666543 5432    1123222    467999999998653 


Q ss_pred             HHHHhcccccccccCCCCCEEEec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~  164 (359)
                      ....+   ......++++.+++.+
T Consensus        82 ~~~~~---~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           82 VNLMS---SLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHHHH---HHHHHHTTCCCEEEEC
T ss_pred             HHHHH---HHHHHHcCCCEEEEEe
Confidence            33333   3344456666666644

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.82  E-value=1.6e-08  Score=93.85  Aligned_cols=112  Identities=11%  Similarity=0.089  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      .+++||||||+|.||..++..+.+.  ++++. ++|+++++.+.+.+ .|+..+++.+++++  +.|+|++|+|...+..
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   90 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPT   90 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            4567999999999999999999887  67755 88999888776654 47888899999997  7899999998655544


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .+.       ..+..|..++..  -.....+.+++.+..++.+..+.
T Consensus        91 ~~~-------~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~  130 (354)
T 3q2i_A           91 QSI-------ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF  130 (354)
T ss_dssp             HHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHH-------HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            443       234566665543  23456777788888877776553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.80  E-value=2.5e-09  Score=98.72  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-C-CCcEEEEcCCccchhHHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~-g~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      ...++|+|||+|.||+.+++.+.. . ..+|.+|||++++.+.+.+.     |  +..+.+++++++++|+|++|+|.+ 
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-  205 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-  205 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-
Confidence            456799999999999999998753 3 36899999999888777653     5  345678999999999999999864 


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      ....++   .  ...+++|++++++++..|. ..++...+..++..|++.
T Consensus       206 ~~~pvl---~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~  249 (350)
T 1x7d_A          206 AYATII---T--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY  249 (350)
T ss_dssp             SEEEEE---C--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred             CCCcee---c--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence            222344   1  2468899999999887665 334444444455567764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.80  E-value=5.7e-09  Score=97.32  Aligned_cols=96  Identities=23%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCcc------CCCHHHHhhcCCEEEEeeCChh-H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-S  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivi~~~p~~~-~  140 (359)
                      +.+++|+|+|+|.||..+++.++.+|++|+++|+++++.+.+.+ .|...      ..+++++++++|+||.|++.+. .
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~  243 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAK  243 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccc
Confidence            67799999999999999999999999999999999877666554 34321      2345677889999999997554 3


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +..++  .++.++.|+++.++||++.
T Consensus       244 ~~~li--~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          244 APKLV--TRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             --CCS--CHHHHTTSCTTCEEEECC-
T ss_pred             cchhH--HHHHHHhhcCCCEEEEEec
Confidence            44444  3566788999999999974

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.79  E-value=2.6e-08  Score=92.56  Aligned_cols=111  Identities=20%  Similarity=0.145  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~  144 (359)
                      +++.+|||||+|.||...+..+... +++|. ++|+++++.+...+.|+..+.+.++++.  +.|+|++|+|...+...+
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA   82 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            4557899999999999999999876 67765 6899988776555668888899999998  789999999865555444


Q ss_pred             hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .       ..++.|+.|+..  ......+.+++.+..++.++.+
T Consensus        83 ~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           83 I-------SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             H-------HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            3       345566655543  2446677788888887776544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.77  E-value=1.2e-08  Score=95.74  Aligned_cols=95  Identities=19%  Similarity=0.267  Sum_probs=73.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CC--------------------------
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PS--------------------------  120 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~--------------------------  120 (359)
                      +.+.+|+|+|+|.+|...++.+..+|++|+++|+++++.+.+.+.|....  +.                          
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            67899999999999999999999999999999999888777666665443  11                          


Q ss_pred             -HHHHhhcCCEEEEeeCChh-HHHHHhcccccccccCCCCCEEEecc
Q 018213          121 -PDEVAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       121 -~~~~~~~aDivi~~~p~~~-~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                       ++++++.+|+||.+++.+. ....++  +++.+..|+++.+|+|++
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~~~~~li--~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETT
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeee--CHHHHhcCCCCCEEEEEe
Confidence             5677889999998883211 122333  345567899999999997

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.76  E-value=2.1e-08  Score=91.46  Aligned_cols=103  Identities=14%  Similarity=0.064  Sum_probs=71.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----h--------CCCccCCCHHHHhhcCCEEEEeeC-
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLA-  136 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivi~~~p-  136 (359)
                      .+||+|||+|.||..+|..|+..|+ +|.+||+++++.+...    .        ..+..+.+. +.+++||+|+++++ 
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4789999999999999999999998 9999999987655421    0        012333566 67889999999993 


Q ss_pred             -------------ChhH-HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHH
Q 018213          137 -------------DPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH  178 (359)
Q Consensus       137 -------------~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~  178 (359)
                                   .+.. .+.++   +++.+. .+++++++.++........+.+.
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~---~~i~~~-~~~~iii~~sNp~~~~~~~~~~~  134 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVA---EGVKKY-CPNAFVICITNPLDVMVSHFQKV  134 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECCSSHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEeCChHHHHHHHHHHh
Confidence                         2222 34444   455444 46899998887544444444443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.76  E-value=3.6e-08  Score=82.44  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCCCccC----CCH---HHH--hhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ----PSP---DEV--AASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~----~~~---~~~--~~~aDivi~~~p~~  138 (359)
                      +.+++|.|+|+|.||..+++.|.+. |++|+++|+++++.+.+.+.|+...    .+.   .++  +.++|+|++++|..
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~  116 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH  116 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence            5567899999999999999999999 9999999999988887777776432    222   233  56789999999876


Q ss_pred             hHHHHHhcccccccccCCCCCEEEec
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~  164 (359)
                      .....++   . ....+.++..++..
T Consensus       117 ~~~~~~~---~-~~~~~~~~~~ii~~  138 (183)
T 3c85_A          117 QGNQTAL---E-QLQRRNYKGQIAAI  138 (183)
T ss_dssp             HHHHHHH---H-HHHHTTCCSEEEEE
T ss_pred             HHHHHHH---H-HHHHHCCCCEEEEE
Confidence            6555554   2 33445555555544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.75  E-value=3.1e-08  Score=91.84  Aligned_cols=111  Identities=19%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHh--hcCCEEEEeeCChhHHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVA--ASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~--~~aDivi~~~p~~~~~~~~  144 (359)
                      +++||||||+|.||..++..+... ++++. ++|+++++.+.+.+ .|+..+.+.++++  .+.|+|++|+|...+...+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   83 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI   83 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            447899999999999999999886 67755 78999887776654 3787788999999  4689999999976555544


Q ss_pred             hcccccccccCCCCCEEEe-c-cCCChHHHHHHHHHHHhcCCeee
Q 018213          145 ACGKHGAASGMGPGKGYVD-V-STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~-~-s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ..++.|..++. - ....+.+.+++.+..++.++.+.
T Consensus        84 ~-------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~  121 (354)
T 3db2_A           84 E-------QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL  121 (354)
T ss_dssp             H-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             H-------HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            3       23455665543 2 24466778888888887776543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.74  E-value=8.6e-09  Score=95.19  Aligned_cols=111  Identities=13%  Similarity=0.161  Sum_probs=80.7

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhHHHHHh
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~  145 (359)
                      ++.+++|+|+|+|+||..+|+.|.++|++|+++|+++++++.+.+. +.... +.++++. +|||++.|..     .+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~-----~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccch-----HHHh
Confidence            4889999999999999999999999999999999998877665543 65555 4556655 8999998752     2344


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                        +.+.++.+ +..+|++.++++.... +..+.+.++|+.+++
T Consensus       244 --~~~~~~~l-g~~iV~e~An~p~t~~-ea~~~L~~~Gi~~~P  282 (364)
T 1leh_A          244 --NDFTIPQL-KAKVIAGSADNQLKDP-RHGKYLHELGIVYAP  282 (364)
T ss_dssp             --STTHHHHC-CCSEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred             --CHHHHHhC-CCcEEEeCCCCCcccH-HHHHHHHhCCCEEec
Confidence              33344455 3467777776654433 466778888876654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.74  E-value=1.2e-08  Score=92.13  Aligned_cols=114  Identities=18%  Similarity=0.114  Sum_probs=83.1

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CC---ccC--CCHHHHhhcCCEEEEeeCChhH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GA---KYQ--PSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~---~~~--~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ++.++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. +.   ...  +++.+.+.++|+||.++|.+..
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            3678999999999999999999999998 999999998887766543 22   221  2455667899999999986542


Q ss_pred             HH--HH-hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AM--DV-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~--~~-~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ..  .+ +   .  ...++++.+++|++.. |..+ .+.+..++.|..+++
T Consensus       218 ~~~~~~~i---~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~  261 (297)
T 2egg_A          218 PRVEVQPL---S--LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQN  261 (297)
T ss_dssp             SCCSCCSS---C--CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred             CCCCCCCC---C--HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEEC
Confidence            11  11 1   1  2357789999999885 4444 366777777777664

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.73  E-value=9.1e-09  Score=91.63  Aligned_cols=112  Identities=16%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhH--HHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPES--AMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~~p~~~~--~~~  143 (359)
                      ++++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. +.  ...++.+++.++|+||.++|....  ...
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-INKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-CEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-cccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            667899999999999999999999998 899999998876655432 22  123455667899999999986422  111


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .+  +   ...++++.+++|++..+.. + .+.+..++.|+..++
T Consensus       194 ~l--~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~~~~~  231 (277)
T 3don_A          194 VI--S---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGNPIYN  231 (277)
T ss_dssp             SS--C---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTCCEEC
T ss_pred             CC--C---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcCEEeC
Confidence            12  1   2457899999999877443 3 467777777766554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.73  E-value=2.5e-08  Score=76.64  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccC-------CCHHHHhhcCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .+++|+|+|+|.||+.+++.|...| ++|++++|++++.+.+...++...       .++.++++++|+|+.++|. ...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~-~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF-FLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG-GGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc-hhh
Confidence            3478999999999999999999999 999999999887776664443221       2344667789999999973 344


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI  179 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  179 (359)
                      ..++   ..   ..+.|..+++.+. .+...+.+.+..
T Consensus        83 ~~~~---~~---~~~~g~~~~~~~~-~~~~~~~~~~~~  113 (118)
T 3ic5_A           83 PIIA---KA---AKAAGAHYFDLTE-DVAATNAVRALV  113 (118)
T ss_dssp             HHHH---HH---HHHTTCEEECCCS-CHHHHHHHHHHH
T ss_pred             HHHH---HH---HHHhCCCEEEecC-cHHHHHHHHHHH
Confidence            4444   22   2446777787754 444455554443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.73  E-value=4.6e-08  Score=89.81  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~  146 (359)
                      +||||||+|.||..+++.+.+. ++++. ++|+++++.+.+.+ .|+. +.+.++++.  +.|+|++|+|...+...+. 
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   81 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE-   81 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH-
Confidence            6899999999999999999885 67766 79999887776654 4777 889999998  7999999998665554443 


Q ss_pred             ccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          147 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                            ..++.|..++..  ....+.+.+++.+..++.++.+.
T Consensus        82 ------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (331)
T 4hkt_A           82 ------RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM  118 (331)
T ss_dssp             ------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ------HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence                  234456555432  24567778888888887776554

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.72  E-value=3.9e-08  Score=90.81  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      +++|||||+|.||..+++.|.+. +++|. ++|+++++.+.+.+. |+..+.++++++.  +.|+|++|+|...+...+.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   83 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT   83 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH
Confidence            46899999999999999999886 67766 799998887776553 7778889999998  7999999998665554443


Q ss_pred             cccccccccCCCCCE-EEecc-CCChHHHHHHHHHHHhcCCeee
Q 018213          146 CGKHGAASGMGPGKG-YVDVS-TVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~-vi~~s-~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                             ..++.|.. ++.-. ...+.+.+++.+..++.++.+.
T Consensus        84 -------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  120 (344)
T 3euw_A           84 -------RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM  120 (344)
T ss_dssp             -------HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEE
T ss_pred             -------HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEE
Confidence                   23444544 44332 4466777888888877765443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.72  E-value=3.7e-08  Score=90.44  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-CCC-ccCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      +++++|||||+|.||..+++.+.+. +++|. ++|+++++.+.+.+ .|+ ..+.+.++++.  +.|+|++|+|...+.+
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS   82 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence            3457999999999999999999885 56766 78999887776654 366 57789999998  7899999998665544


Q ss_pred             HHhcccccccccCCCCC-EEEecc-CCChHHHHHHHHHHHhcCCeeec
Q 018213          143 DVACGKHGAASGMGPGK-GYVDVS-TVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~-~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .+.       ..++.|. +++.-- ...+.+.+++.+..++.++.+..
T Consensus        83 ~~~-------~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v  123 (330)
T 3e9m_A           83 AAK-------LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLME  123 (330)
T ss_dssp             HHH-------HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            443       2344555 444332 44667778888888877765543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.72  E-value=3.4e-08  Score=91.43  Aligned_cols=112  Identities=15%  Similarity=0.167  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCChhhH-HHHHHHHHC-CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~-~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      ++++||||||+|.||. .++..+... +++|. ++|+++++.+.+.+ .|+..+.+++++++  +.|+|++|+|...+.+
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~  104 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE  104 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            5668999999999998 799999887 67765 78999887776654 37877789999997  5899999998665554


Q ss_pred             HHhcccccccccCCCCCEEEe-c-cCCChHHHHHHHHHHHhcCCeee
Q 018213          143 DVACGKHGAASGMGPGKGYVD-V-STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~-~-s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .+.       ..++.|..|+. - ......+.+++.+..++.++.+.
T Consensus       105 ~~~-------~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~  144 (350)
T 3rc1_A          105 WID-------RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM  144 (350)
T ss_dssp             HHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            443       23456665543 2 24467778888888887776543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.72  E-value=7e-08  Score=88.09  Aligned_cols=113  Identities=19%  Similarity=0.246  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHH-CCCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLK-AGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~-~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +++++|||||+|.||.. ++..+.. .++++. ++|+++++.+.+.+. |+..+++.+++..++|+|++++|...+.+.+
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~   82 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV   82 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHH
Confidence            44579999999999996 8888876 467766 899999887766543 6767778887766899999999865554444


Q ss_pred             hcccccccccCCCCCE-EEec-cCCChHHHHHHHHHHHhcCCeeec
Q 018213          145 ACGKHGAASGMGPGKG-YVDV-STVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~-vi~~-s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .       ..++.|.. ++.- ....+.+.+++.+..++.++.+..
T Consensus        83 ~-------~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           83 S-------TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             H-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             H-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            3       23556664 4442 344667778888888877765543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.71  E-value=4.2e-08  Score=89.19  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=66.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC----------CCcc-CCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL----------GAKY-QPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----------g~~~-~~~~~~~~~~aDivi~~~p~~  138 (359)
                      |||+|||+|.||..+|..|...|  ++|.++|+++++.+.+...          .+.. ..+. +.++++|+|++++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            68999999999999999999988  7999999998766544321          1233 3466 6778999999999865


Q ss_pred             hH-------------------HHHHhcccccccccCCCCCEEEeccCC
Q 018213          139 ES-------------------AMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       139 ~~-------------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ..                   .+.++   +.+.+. .+++++++.++.
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~-~~~~~ii~~tNp  124 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMVQSVG---TNLKES-GFHGVLVVISNP  124 (309)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCcEEEEEcCc
Confidence            43                   34444   444443 367788776553

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.68  E-value=1.3e-08  Score=89.52  Aligned_cols=110  Identities=16%  Similarity=0.080  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHH-HHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAM-DVA  145 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~-~~~  145 (359)
                      +++ +++|||+|.||++++..|...|. +|++++|++++.+.+.+. +.....++.+.++++|+||.++|....-. ..+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            566 89999999999999999999998 899999998876655432 22234567788899999999998532110 111


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe-eec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~-~~~  188 (359)
                        +   .+.++++.+++|+..+   . ..+.+..++.|+. .++
T Consensus       186 --~---~~~l~~~~~V~Divy~---~-T~ll~~A~~~G~~~~~~  220 (253)
T 3u62_A          186 --S---DDSLKNLSLVYDVIYF---D-TPLVVKARKLGVKHIIK  220 (253)
T ss_dssp             --C---HHHHTTCSEEEECSSS---C-CHHHHHHHHHTCSEEEC
T ss_pred             --C---HHHhCcCCEEEEeeCC---C-cHHHHHHHHCCCcEEEC
Confidence              1   1346789999999877   2 2455555556655 443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.67  E-value=1.1e-07  Score=87.22  Aligned_cols=110  Identities=11%  Similarity=0.170  Sum_probs=79.2

Q ss_pred             CeEEEEcCChhhHHH-HHHHHHCCCcEE-EEcCCccchhHHHh-CCCc-cCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGMGIMGTPM-AQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAK-YQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~G~iG~~i-a~~l~~~g~~V~-~~d~~~~~~~~~~~-~g~~-~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      ++|||||+|.||..+ +..+.+.++++. ++|+++++.+.+.+ .|+. .+.+.+++++  ++|+|++++|...+...+.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            479999999999998 888877778865 78999887766554 3663 6788999987  4999999998554433332


Q ss_pred             cccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                             ..++.|+.++..  ......+.+++.+..++.++.+..
T Consensus        81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~  118 (332)
T 2glx_A           81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGT  118 (332)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence                   235567755433  334667778888888777766544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.67  E-value=1.6e-07  Score=86.27  Aligned_cols=112  Identities=17%  Similarity=0.256  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCChhhH-HHHHHHHHCCCcE-EEEcCCccchhHHHhC--CCccCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGT-PMAQNLLKAGCDV-TVWNRTKSKCDPLISL--GAKYQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~-~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      +++++|||||+|.+|. .++..+...+++| .++|+++++.+.+.+.  +...+.+.+++++  +.|+|++|+|...+.+
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   81 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE   81 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence            3458999999999996 6778787778886 5899999888776654  5677889999997  5899999999665555


Q ss_pred             HHhcccccccccCCCCCEEE-ec-cCCChHHHHHHHHHHHhcCCeee
Q 018213          143 DVACGKHGAASGMGPGKGYV-DV-STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi-~~-s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .++       ..++.|+.|+ .- ......+.+++.+..++.++.+.
T Consensus        82 ~~~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~  121 (336)
T 2p2s_A           82 LAL-------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA  121 (336)
T ss_dssp             HHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             HHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            444       3455677544 32 34466777888888877776543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.67  E-value=6.9e-08  Score=78.46  Aligned_cols=95  Identities=17%  Similarity=0.144  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-hCCCccC----CCHH---HH-hhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ----PSPD---EV-AASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~----~~~~---~~-~~~aDivi~~~p~~~  139 (359)
                      ..+++|.|+|+|.+|+.+++.|...|++|+++++++++.+.+. ..|....    .+.+   +. +.++|+|++++|.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            5568999999999999999999999999999999988877665 4454321    1222   22 567999999998654


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ....+.    .....+.+...++...++
T Consensus        97 ~~~~~~----~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           97 TNFFIS----MNARYMFNVENVIARVYD  120 (155)
T ss_dssp             HHHHHH----HHHHHTSCCSEEEEECSS
T ss_pred             HHHHHH----HHHHHHCCCCeEEEEECC
Confidence            433332    233444455555544443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.66  E-value=1.1e-07  Score=87.88  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHH-H-CCCcE-EEEcCCccchhHHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLL-K-AGCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~-~-~g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~~p~~~~~  141 (359)
                      .++++|||||+|.||..+++.+. . .++++ .++|+++++.+.+.+. |+ ..+.+.++++.  ++|+|++|+|...+.
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~   85 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP   85 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH
Confidence            44579999999999999999998 5 36775 5789998877666553 66 56789999986  689999999855444


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhc-CCeee
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKAT-GASFL  187 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~-~~~~~  187 (359)
                      ..+.       ..++.|..++..  ......+.+++.+..++. ++.+.
T Consensus        86 ~~~~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~  127 (346)
T 3cea_A           86 EMTI-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ  127 (346)
T ss_dssp             HHHH-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred             HHHH-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence            4443       335567655432  233556667788877776 66554

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.66  E-value=3.4e-08  Score=90.01  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-CCcE-EEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      ++++|||||+|.||..+++.|.+. ++++ .++|+++++.+.+.+. +..+.+.+++++  ++|+|++++|...+...+.
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   87 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL   87 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH
Confidence            447899999999999999999886 5664 5899988766554444 556778999986  7999999998554443332


Q ss_pred             cccccccccCCCCCEE-Eec-cCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGY-VDV-STVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~v-i~~-s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                             ..++.|+.+ +.- ......+.+++.+..++.++.+..
T Consensus        88 -------~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~  125 (315)
T 3c1a_A           88 -------AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWV  125 (315)
T ss_dssp             -------HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             -------HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence                   235566644 442 344667778888888777765443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.65  E-value=1.7e-08  Score=89.27  Aligned_cols=111  Identities=18%  Similarity=0.096  Sum_probs=80.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      ++++.|||+|.+|++++..|...|.+|++++|++++.+.+.+.++... +.+++ .++|+||.++|........+  ..+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l--~~~  193 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL--NKE  193 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC--ChH
Confidence            689999999999999999999999999999999998887765454433 33443 38999999998653211112  111


Q ss_pred             -ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          151 -AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       151 -~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       +.+.++++.+++|+...+  .+ .+.+..++.|+..++
T Consensus       194 ~l~~~l~~~~~v~D~vY~P--~T-~ll~~A~~~G~~~~~  229 (269)
T 3phh_A          194 VLKGYFKEGKLAYDLAYGF--LT-PFLSLAKELKTPFQD  229 (269)
T ss_dssp             HHHHHHHHCSEEEESCCSS--CC-HHHHHHHHTTCCEEC
T ss_pred             HHHhhCCCCCEEEEeCCCC--ch-HHHHHHHHCcCEEEC
Confidence             122467889999998764  33 377777777766555

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.63  E-value=9.6e-08  Score=88.14  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      +||||||+|.||..+++.+.+. ++++. ++|+++++.+.+.+. ++ ..+.++++++.  ++|+|++|+|...+...+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   82 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence            6899999999999999999875 56765 789998877666543 65 36789999998  7999999998655544443


Q ss_pred             cccccccccCCCCCEEE-ec-cCCChHHHHHHHHHHHhcCCeee
Q 018213          146 CGKHGAASGMGPGKGYV-DV-STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi-~~-s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                             ..++.|..++ .- ....+.+.+++.+..++.++.+.
T Consensus        83 -------~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~  119 (344)
T 3ezy_A           83 -------ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF  119 (344)
T ss_dssp             -------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             -------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEE
Confidence                   2345566544 32 24567778888888887776443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.63  E-value=1.3e-07  Score=87.84  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHH-H-CCCcEE-EEcCCccchhHHHhC-C--CccCCCHHHHhh--cCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLISL-G--AKYQPSPDEVAA--SCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~-~-~g~~V~-~~d~~~~~~~~~~~~-g--~~~~~~~~~~~~--~aDivi~~~p~~~~  140 (359)
                      +.++||||||+|.||..++..+. . .++++. ++|+++++.+.+.+. |  ...+.++++++.  +.|+|++|+|...+
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            45579999999999999999998 4 367765 799999887766543 5  667889999997  48999999986655


Q ss_pred             HHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ...+.       ..++.|..|+..  -.....+.+++.+..++.+..+
T Consensus       101 ~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  141 (357)
T 3ec7_A          101 ADVAV-------AALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM  141 (357)
T ss_dssp             HHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHH-------HHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence            54443       334566655532  2446677788888888777644

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.62  E-value=4.8e-08  Score=89.19  Aligned_cols=92  Identities=16%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-C-CCcEEEEcCCccchhHHHhC------CCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISL------GAKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~-g~~V~~~d~~~~~~~~~~~~------g~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ...++|+|||+|.+|+.+++.|.. . ..+|.+|||++++.+.+.+.      .+. +.++++++ ++|+|++|+|... 
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~-  199 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK-  199 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS-
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC-
Confidence            345799999999999999999876 3 36799999999887776642      234 67899999 9999999998542 


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                        .++   .  ...+++|++|++++...|.
T Consensus       200 --pv~---~--~~~l~~G~~V~~ig~~~p~  222 (322)
T 1omo_A          200 --PVV---K--AEWVEEGTHINAIGADGPG  222 (322)
T ss_dssp             --CCB---C--GGGCCTTCEEEECSCCSTT
T ss_pred             --cee---c--HHHcCCCeEEEECCCCCCC
Confidence              333   1  2468899999999776665

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.62  E-value=9.8e-08  Score=88.63  Aligned_cols=111  Identities=7%  Similarity=0.015  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC--CCccCCCHHHHhhcC--CEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAASC--DVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~a--Divi~~~p~~~~~  141 (359)
                      +++++|||||+|.||.. +++.+... +.++. ++|+++++.+.+.+.  +...+.+.++++++.  |+|++|+|...+.
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   82 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF   82 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            45579999999999995 88988775 67765 889998887776654  466788999999854  9999999855444


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +.+.       ..++.|+.|+..  ......+.+++.+..++.++.+
T Consensus        83 ~~~~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  122 (359)
T 3m2t_A           83 EMGL-------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVS  122 (359)
T ss_dssp             HHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             HHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            4333       345566655533  2345667778888887766543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.62  E-value=4e-07  Score=79.28  Aligned_cols=84  Identities=17%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      ++||+|+|+|+||+.+++.+...+.++. ++|++++.     ..|+..++++++++ ++|++|-++ .+..+...+   +
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---~   72 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---D   72 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH---T
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH---H
Confidence            5899999999999999999998877755 47887652     35788888999988 999998666 366666665   3


Q ss_pred             cccccCCCCCEEEeccCCCh
Q 018213          150 GAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~  169 (359)
                           ++.|..+|..++|..
T Consensus        73 -----l~~g~~vVigTTG~s   87 (243)
T 3qy9_A           73 -----EDFHLPLVVATTGEK   87 (243)
T ss_dssp             -----SCCCCCEEECCCSSH
T ss_pred             -----HhcCCceEeCCCCCC
Confidence                 566776666666643

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.61  E-value=1.6e-07  Score=86.12  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCc-cCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAK-YQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      ++++||||||+|.||..++..+... +.++. ++|+++++.+.+.+. |+. .+.+.++++.  +.|+|++++|...+.+
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK   82 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            4557999999999999999998765 45554 789999887776554 654 6789999998  7899999998655544


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeeec
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .+.       ..++.|..|+..  -.....+.+++.+..++.++.+..
T Consensus        83 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v  123 (329)
T 3evn_A           83 VAK-------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLME  123 (329)
T ss_dssp             HHH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHH-------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            443       335566655532  234567778888888877765543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.60  E-value=2.2e-07  Score=74.11  Aligned_cols=87  Identities=14%  Similarity=0.251  Sum_probs=64.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivi~~~p~~~~~~~  143 (359)
                      .+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.|+...    .+.+.+    +.++|+|++++|.+.....
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999999998888877776432    122221    3579999999987665554


Q ss_pred             HhcccccccccCCCCCEEE
Q 018213          144 VACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi  162 (359)
                      ++   . ....+.++..+|
T Consensus        88 ~~---~-~a~~~~~~~~ii  102 (140)
T 3fwz_A           88 IV---A-SARAKNPDIEII  102 (140)
T ss_dssp             HH---H-HHHHHCSSSEEE
T ss_pred             HH---H-HHHHHCCCCeEE
Confidence            44   2 233344555555

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.59  E-value=1.3e-07  Score=85.64  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++++||||||+|+||+.+++.+.+. ++++. ++|+++++.+.   .|+..  .+++.+. .++|+|++|+|...+.+.+
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~   82 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTA   82 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHH
Confidence            4467999999999999999999874 57776 68998876543   45442  3444444 6899999999854444333


Q ss_pred             hcccccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~~  186 (359)
                      .       ..++.|..+++....   .+.....+.+..++.+..+
T Consensus        83 ~-------~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~  120 (304)
T 3bio_A           83 L-------EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA  120 (304)
T ss_dssp             H-------HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred             H-------HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence            2       345678888876432   3445567777777777543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.59  E-value=9.1e-08  Score=90.90  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++++|+|+|.||+.+|+.|+.+|.+|+++|+++.+.......++.. .++++++..+|+++.+...    .+++  +
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~----~~vl--~  335 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGN----KDII--M  335 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSC----SCSB--C
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCC----hhhh--h
Confidence            7889999999999999999999999999999999987766666666644 4788889999999987642    2344  2


Q ss_pred             ccccccCCCCCEEEeccCCC
Q 018213          149 HGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .+.+..|+++.+|+|.++..
T Consensus       336 ~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          336 LDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             HHHHTTSCTTEEEEESSSTT
T ss_pred             HHHHHhcCCCeEEEEcCCCC
Confidence            44567899999999999874

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.58  E-value=1.5e-07  Score=86.85  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=80.3

Q ss_pred             CeEEEEcCChhhHHHHHHHH-H-CCCcEE-EEcCCccchhHHHh-CC--CccCCCHHHHhhc--CCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLIS-LG--AKYQPSPDEVAAS--CDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~-~-~g~~V~-~~d~~~~~~~~~~~-~g--~~~~~~~~~~~~~--aDivi~~~p~~~~~~~  143 (359)
                      ++|||||+|.||..++..+. . .++++. ++|+++++.+.+.+ .|  ...++++++++++  .|+|++|+|...+...
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            68999999999999999998 4 367765 78999887776654 36  5678899999986  8999999986555444


Q ss_pred             HhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          144 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +.       ..++.|..++..  ......+.+++.+..++.+..+
T Consensus        83 ~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           83 VL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             HH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            43       345566655532  2346677788888888777654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.57  E-value=8e-08  Score=87.68  Aligned_cols=91  Identities=19%  Similarity=0.255  Sum_probs=63.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh---C------CCcc-CCCHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKY-QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~-~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |||+|||+|.||..++..|...|+  +|.++|+++++.+....   .      .... ..+ .+.++++|+||+++|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            579999999999999999999999  99999999776554331   1      1111 234 456789999999998543


Q ss_pred             H---------------HHHHhcccccccccCCCCCEEEeccCC
Q 018213          140 S---------------AMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       140 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .               .+.++   +.+.+. .+++++++.++.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~~~~~ii~~tNp  118 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIA---RNVSKY-APDSIVIVVTNP  118 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHhh-CCCeEEEEeCCc
Confidence            1               23444   444333 477788877553

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.57  E-value=2e-07  Score=86.36  Aligned_cols=94  Identities=18%  Similarity=0.174  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc------cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK------SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~------~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +++++|+|||+|.-|.+-|..|+..|.+|++--|..      ...+...+.|..+. +..|+++.+|+|++.+|+. .-.
T Consensus        35 lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~-~q~  112 (491)
T 3ulk_A           35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK-QHS  112 (491)
T ss_dssp             GTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG-GHH
T ss_pred             HcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh-hHH
Confidence            788999999999999999999999999999877622      22334556677765 7999999999999999854 445


Q ss_pred             HHhcccccccccCCCCCEEEeccCCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .++   +++.+.|++|+.+.- |.|.
T Consensus       113 ~vy---~~I~p~lk~G~~L~f-aHGF  134 (491)
T 3ulk_A          113 DVV---RTVQPLMKDGAALGY-SHGF  134 (491)
T ss_dssp             HHH---HHHGGGSCTTCEEEE-SSCH
T ss_pred             HHH---HHHHhhCCCCCEEEe-cCcc
Confidence            566   568999999998763 4443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.56  E-value=2.6e-07  Score=84.89  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=80.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---Cc-EEEEcCCccchhHHHh-CCC-ccCCCHHHHhh--cCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---CD-VTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---~~-V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivi~~~p~~~~~~~  143 (359)
                      +||||||+|.||..+++.+...+   ++ |.++|+++++.+.+.+ .|+ ..+.+.++++.  +.|+|++++|...+...
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            68999999999999999998754   34 4578999887776654 366 46789999997  58999999986655544


Q ss_pred             HhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          144 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      +.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        83 ~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~  121 (334)
T 3ohs_X           83 VM-------LCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM  121 (334)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HH-------HHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            43       345566655533  24466777888888877776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.56  E-value=2.9e-07  Score=73.37  Aligned_cols=71  Identities=17%  Similarity=0.122  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~~p~~~  139 (359)
                      ..+++|.|+|+|.+|+.+++.|.+.|++|+++|+++++.+.+.+.+...    ..+.+.+    +.++|+|++++|...
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            3457899999999999999999999999999999998887777666532    1222222    357899999998443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.56  E-value=1.5e-07  Score=86.14  Aligned_cols=109  Identities=12%  Similarity=0.098  Sum_probs=75.2

Q ss_pred             CeEEEEcCChhhH-HHHHHHHHC-CCcEEEEcCCccchhHHHh-CCCcc-CCCHHHHh-hcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGT-PMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAKY-QPSPDEVA-ASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~-~ia~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~~~-~~~~~~~~-~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++|||||+|+||. .+++.|... +++|.++|+++++.+.+.+ .|+.. +.+..+++ .++|+|++++|...+...+. 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~-   81 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   81 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH-
Confidence            6899999999998 599988764 6787799999887776654 36553 34445555 67999999998544433332 


Q ss_pred             ccccccccCCCCC-EEEec-cCCChHHHHHHHHHHHhcCCeee
Q 018213          147 GKHGAASGMGPGK-GYVDV-STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       147 ~~~~~~~~l~~~~-~vi~~-s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                            ..++.|+ +++.- ......+.+++.+..++.++.+.
T Consensus        82 ------~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (323)
T 1xea_A           82 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY  118 (323)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence                  2345565 44443 33456677788888877776544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.55  E-value=6.3e-08  Score=77.17  Aligned_cols=70  Identities=13%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHH---H-hhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDE---V-AASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~---~-~~~aDivi~~~p~~  138 (359)
                      +++++|.|+|+|.+|+.+++.|...|++|+++++++++.+.+.+.+....    .+.+.   + +.++|+|++++|.+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            45578999999999999999999999999999998776555444443221    12222   2 46799999999754

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.54  E-value=2.7e-07  Score=73.93  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=77.3

Q ss_pred             CCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        71 ~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      .++|+|||+    |++|..+++.|.+.|++|+-.+  ++. +.+  .|...+.+++|+....|++++++| ++....++ 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn--p~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp-~~~~~~vv-   94 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN--PKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV-   94 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC--TTC-SEE--TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC--CCC-CeE--CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH-
Confidence            578999999    7999999999999999855444  433 211  377788899998888999999997 57777777 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                        +++.+. ..+.+++..  +..  .+++.+.+++.|+++++.
T Consensus        95 --~~~~~~-gi~~i~~~~--g~~--~~~l~~~a~~~Gi~vvGp  130 (144)
T 2d59_A           95 --EQAIKK-GAKVVWFQY--NTY--NREASKKADEAGLIIVAN  130 (144)
T ss_dssp             --HHHHHH-TCSEEEECT--TCC--CHHHHHHHHHTTCEEEES
T ss_pred             --HHHHHc-CCCEEEECC--Cch--HHHHHHHHHHcCCEEEcC
Confidence              555443 233455432  222  567888888889998863

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.54  E-value=1.6e-07  Score=85.25  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++|+|||+|.||..+++.|.. .+ .+|.+|||+  +.+.+.+     .|+  ..+ +++++++++|+|+.|+|..  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~--  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST--  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC--
Confidence            45789999999999999999976 34 589999999  4444443     254  345 9999999999999999853  


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       ..++   .  .+.+++|++|+++++..|.
T Consensus       195 -~pvl---~--~~~l~~G~~V~~vGs~~p~  218 (313)
T 3hdj_A          195 -TPLF---A--GQALRAGAFVGAIGSSLPH  218 (313)
T ss_dssp             -SCSS---C--GGGCCTTCEEEECCCSSTT
T ss_pred             -Cccc---C--HHHcCCCcEEEECCCCCCc
Confidence             2444   2  2468999999999887664

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.52  E-value=2.1e-07  Score=74.15  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             CCCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           70 LPGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +.++|+|||+    |++|..+++.|.+.|++  +|++++++ .+.+  .|...+.+++|+....|++++++| ++.+..+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp-~~~~~~v   86 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDH   86 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeC-HHHHHHH
Confidence            3578999999    89999999999999998  45555542 1221  377788899998888999999997 5777777


Q ss_pred             hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +   +++.+. ..+.+++..+..    .+++.+.+++.|+++++
T Consensus        87 ~---~~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           87 L---PEVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             H---HHHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred             H---HHHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence            7   555443 234566544332    46788888888998886

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.51  E-value=3.2e-07  Score=84.00  Aligned_cols=66  Identities=14%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----h----C----CCccCCCHHHHhhcCCEEEEee
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S----L----GAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~----~----g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +.|||+|||+|.||..+|..|+..|+ +|.+||+++++++...    +    .    .+..+.++++.+++||+||+++
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            34799999999999999999999998 9999999987655411    1    1    1233468887889999999998

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.51  E-value=8.8e-08  Score=89.16  Aligned_cols=113  Identities=13%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC----Ccc--CCCHHHHhhcCCEEEEeeCChhH
Q 018213           67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG----AKY--QPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g----~~~--~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      .+.+.|||.|+|+|.+|+.+++.|++ .++|.++|++.++.+.+.+..    +..  .+++.++++++|+||.++|.. .
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~-~   89 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF-L   89 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG-G
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc-c
Confidence            33667899999999999999999976 489999999987766654421    111  224567788999999999843 3


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ...++   +   ..++.|..++|+|-.. ....++.+..++.|+.++.
T Consensus        90 ~~~v~---~---~~~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~  130 (365)
T 3abi_A           90 GFKSI---K---AAIKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVF  130 (365)
T ss_dssp             HHHHH---H---HHHHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEEC
T ss_pred             cchHH---H---HHHhcCcceEeeeccc-hhhhhhhhhhccCCceeee
Confidence            33443   2   2355677777775332 2334555555566665543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.51  E-value=5e-07  Score=83.89  Aligned_cols=112  Identities=16%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcE-EEEcCCccchhHHHh-CC----CccCCCHHHHhh--cCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LG----AKYQPSPDEVAA--SCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g----~~~~~~~~~~~~--~aDivi~~~p~~~  139 (359)
                      .++++|||||+|.||..+++.+... ++++ .++|+++++.+.+.+ .|    ...+.+.+++++  +.|+|++++|...
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   83 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL   83 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence            3457999999999999999999875 5665 578999877666554 34    356789999987  5899999998554


Q ss_pred             HHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      +...+.       ..++.|+.|+..  ......+.+++.+..++.++.+.
T Consensus        84 h~~~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           84 HVEWAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             HHHHHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             HHHHHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            443333       345677765543  23456677888888888777655

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.50  E-value=3.2e-07  Score=87.33  Aligned_cols=112  Identities=12%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCChhhH-HHHHHHHHC-CCcE-EEEcCCccchhHHHh-CCCc-----cCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGT-PMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LGAK-----YQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~-~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~-~g~~-----~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      +++++|||||+|.||+ .+++.+... ++++ .++|+++++.+.+.+ .|+.     .+.+.++++.  +.|+|++|+|.
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~  160 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  160 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence            5567999999999997 899998775 4665 588999887766554 3554     5778999987  68999999986


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      ..+.+.+.       ..++.|..|+..  ......+.+++.+..++.++.+.
T Consensus       161 ~~h~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          161 SLHAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             hhHHHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence            55544443       345566655433  23456677788888877776554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.48  E-value=5.3e-07  Score=81.86  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHH---hC-------C--CccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLI---SL-------G--AKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~---~~-------g--~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+|.||..+|..|+..  |++|.++|+++++.+...   ..       .  +..+.+.++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            5899999999999999999884  799999999987665432   11       1  223356666 8899999999975


Q ss_pred             h
Q 018213          138 P  138 (359)
Q Consensus       138 ~  138 (359)
                      +
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.47  E-value=5.3e-07  Score=83.84  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~  144 (359)
                      ++++|||||+|.||.. .+..+... +++|. ++|+++++... ...+...+.+.++++.  +.|+|++|+|...+...+
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~   84 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA   84 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            4578999999999997 77777665 67765 78998865441 1225677889999998  689999999866555544


Q ss_pred             hcccccccccCCCCCEEEecc--CCChHHHHHHHHHHHhcCCeee
Q 018213          145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ..++.|+.|+..-  .....+.+++.+..++.++.+.
T Consensus        85 ~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~  122 (364)
T 3e82_A           85 R-------LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS  122 (364)
T ss_dssp             H-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             H-------HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            3       3456677666543  3466777888888887776543

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.46  E-value=5.2e-07  Score=83.33  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~~p~~~~~  141 (359)
                      .+++||||||+|.||+. ++..+... +.+|. ++|+++++.+.+.+. |+ ..+++.++++++  .|+|++|+|...+.
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH
Confidence            34579999999999986 56777765 56765 789999887776553 66 467899999964  79999999966555


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +.++       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       101 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  140 (350)
T 4had_A          101 EWSI-------KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV  140 (350)
T ss_dssp             HHHH-------HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred             HHHH-------HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence            5444       345566666543  2234566778888887776544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.45  E-value=6.2e-07  Score=82.54  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCC-hhhHHHHHHHHHC--CCcE-EEEcCCccchhHHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhH
Q 018213           69 ELPGRIGFLGMG-IMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPES  140 (359)
Q Consensus        69 ~~~~~igiiG~G-~iG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~~p~~~~  140 (359)
                      ....+|||||+| .+|...+..+...  +.++ .++|+++++.+.+.+. |+ ..+.+.+++++  +.|+|++++|...+
T Consensus        16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            556799999999 8999999999876  4565 5789998877766543 55 67889999997  58999999986555


Q ss_pred             HHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      ...+.       ..++.|..|+.-  -.....+.+++.+..++.++.+.
T Consensus        96 ~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~  137 (340)
T 1zh8_A           96 LPFIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY  137 (340)
T ss_dssp             HHHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             HHHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            44433       345566655543  22356677788888877765443

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.45  E-value=9.7e-07  Score=82.63  Aligned_cols=111  Identities=15%  Similarity=0.074  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC--------CCcE-EEEcCCccchhHHHhC-CC-ccCCCHHHHhhc--CCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA--------GCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~--------g~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~~  135 (359)
                      |++-||||||+|.||+..++.+...        +.+| .++|+++++.+.+.+. |+ ..+++.++++++  .|+|++|+
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            5667899999999999888776542        3565 4789999888777654 65 467899999964  79999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      |...+.+.++       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       103 P~~~H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  148 (393)
T 4fb5_A          103 PNQFHAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAERSGKVA  148 (393)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred             ChHHHHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence            9766655554       345667766644  2345667788888888776544

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.44  E-value=3.2e-07  Score=86.51  Aligned_cols=71  Identities=28%  Similarity=0.324  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH-hCCCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI-SLGAKY--QPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~-~~g~~~--~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      +.+++|+|||+|.||..+++.+..+|+ +|++++|++++.+.+. +.|...  ..++.+++.++|+||.|+|.+.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence            677999999999999999999999998 8999999987764443 335543  2467788889999999998654

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.43  E-value=5.9e-07  Score=84.53  Aligned_cols=111  Identities=9%  Similarity=0.028  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCh---hhHHHHHHHHHCC-CcEE--EEcCCccchhHHHh-CCC---ccCCCHHHHhhc-------CCEE
Q 018213           69 ELPGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVT  131 (359)
Q Consensus        69 ~~~~~igiiG~G~---iG~~ia~~l~~~g-~~V~--~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDiv  131 (359)
                      +++.+|||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ..+++.++++.+       .|+|
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V   89 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV   89 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEE
Confidence            4567999999999   9999999887665 6765  57999888777654 477   678899999975       8999


Q ss_pred             EEeeCChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ++|+|...+...+.       ..++.|..|+.-  -.....+.+++.+..++.++.+
T Consensus        90 ~i~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  139 (398)
T 3dty_A           90 SIATPNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV  139 (398)
T ss_dssp             EEESCGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             EECCCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence            99998665554443       344566666543  2345677788888888777654

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.43  E-value=8.3e-07  Score=81.17  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----h-------C-CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S-------L-GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~-------~-g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      .+||+|||+|.||..+|..|+..|+ +|.+||+++++++...    +       . .+..+.+. +.+++||+||++++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~   92 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV   92 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence            3789999999999999999999998 9999999987665321    1       0 13334566 678999999999832


Q ss_pred             hh---------------HHHHHhcccccccccCCCCCEEEeccC
Q 018213          138 PE---------------SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       138 ~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +.               -.+.++   +++.+. .+++++++.|+
T Consensus        93 p~k~g~tr~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  132 (328)
T 2hjr_A           93 PRKPNMTRSDLLTVNAKIVGSVA---ENVGKY-CPNAFVICITN  132 (328)
T ss_dssp             CCCTTCCSGGGHHHHHHHHHHHH---HHHHHH-CTTCEEEECCS
T ss_pred             CCCCCCchhhHHhhhHHHHHHHH---HHHHHH-CCCeEEEEecC
Confidence            21               123333   444333 37888887755

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.43  E-value=7.2e-07  Score=84.09  Aligned_cols=140  Identities=22%  Similarity=0.312  Sum_probs=92.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcE-EEEcCCccchhHHHhC--C----------------------CccCCCHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISL--G----------------------AKYQPSPD  122 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~--g----------------------~~~~~~~~  122 (359)
                      .+..||||||+|.||+.++..+... +.+| .++|+++++.+.+.+.  |                      ...+++.+
T Consensus        21 ~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e  100 (446)
T 3upl_A           21 GKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND  100 (446)
T ss_dssp             TCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred             CCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence            4557999999999999999988754 5564 4789998876655431  3                      34578999


Q ss_pred             HHhh--cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213          123 EVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVSGSKKPAE  199 (359)
Q Consensus       123 ~~~~--~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  199 (359)
                      +++.  +.|+|++++|.+..-..+.      ...++.|+.|+..... .......|.+..++.|+.+             
T Consensus       101 eLL~d~dIDaVviaTp~p~~H~e~a------~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl-------------  161 (446)
T 3upl_A          101 LILSNPLIDVIIDATGIPEVGAETG------IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIY-------------  161 (446)
T ss_dssp             HHHTCTTCCEEEECSCCHHHHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE-------------
T ss_pred             HHhcCCCCCEEEEcCCChHHHHHHH------HHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCee-------------
Confidence            9997  4799999998653322232      3456788888743211 1123356666666655443             


Q ss_pred             CCceEEEecCC-HHHHHHHHHHHHHhCCCeEEeC
Q 018213          200 DGQLIFLAAGD-KSLYNTVAPLLDIMGKSRFYLG  232 (359)
Q Consensus       200 ~~~~~~~~~g~-~~~~~~v~~ll~~lg~~~~~~g  232 (359)
                           .+..++ +.....+.++.+.+|+.++..|
T Consensus       162 -----~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          162 -----SLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             -----EECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             -----eecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                 223344 4445567777788898888775

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.43  E-value=6.7e-07  Score=83.84  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             CCeEEEEcCC-hhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhc--CCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLGMG-IMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG~G-~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~  144 (359)
                      ++||||||+| .||..++..+... ++++. ++|+++++.+.+.+ .|+..+.+.++++++  .|+|++++|...+...+
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~   81 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV   81 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence            3689999999 9999999999875 45654 78999887766554 488888999999975  89999999865554444


Q ss_pred             hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ..++.|+.|+..  ......+.+++.+..++.++.+.
T Consensus        82 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~  119 (387)
T 3moi_A           82 V-------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV  119 (387)
T ss_dssp             H-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             H-------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEE
Confidence            3       345566655543  23456777888888887776543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.43  E-value=4.3e-07  Score=82.84  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC-CCcE-EEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ++||+|||+|+||+.+++.+.+. ++++ .++|+++++  .+. .|+..++++++++.++|+|++|+|...+...+.   
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~---   76 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA---   76 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH---
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH---
Confidence            47899999999999999999876 4664 578888654  222 455556778888788999999998554444443   


Q ss_pred             ccccccCCCCCEEEeccCCC--hHHH-HHHHHHHHhcC
Q 018213          149 HGAASGMGPGKGYVDVSTVD--GDTS-KLINGHIKATG  183 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~--~~~~-~~l~~~l~~~~  183 (359)
                          ..++.|..++......  .... +.+.+..++++
T Consensus        77 ----~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           77 ----PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             ----HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence                3456677777654432  2233 45666665544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.43  E-value=9.7e-07  Score=83.57  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCh---hhHHHHHHHHHCC-CcEE--EEcCCccchhHHHh-CCC---ccCCCHHHHhhc-------CCEE
Q 018213           69 ELPGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVT  131 (359)
Q Consensus        69 ~~~~~igiiG~G~---iG~~ia~~l~~~g-~~V~--~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDiv  131 (359)
                      ++++||||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ..+++.++++.+       .|+|
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            4557999999999   9999999888766 6765  67999888776654 366   578899999976       8999


Q ss_pred             EEeeCChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ++++|...+.+.+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       115 ~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  164 (417)
T 3v5n_A          115 AIVTPNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALF  164 (417)
T ss_dssp             EECSCTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred             EECCCcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999765554443       345667666543  2346667778888887776544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.41  E-value=5.1e-07  Score=83.26  Aligned_cols=109  Identities=15%  Similarity=0.128  Sum_probs=77.7

Q ss_pred             CeEEEEcCChhhHH-HHH-HHHH-CCCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhhc--CCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLGMGIMGTP-MAQ-NLLK-AGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG~G~iG~~-ia~-~l~~-~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~  144 (359)
                      +||||||+|.||+. .+. .+.. .+++|. ++|+++++.+...+. ++..++++++++.+  .|+|++|+|...+.+.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   82 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence            68999999999996 555 3333 367776 789988765444333 67778899999986  89999999866555444


Q ss_pred             hcccccccccCCCCCEEEecc--CCChHHHHHHHHHHHhcCCeee
Q 018213          145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .       ..++.|+.|+..-  ...+.+.+++.+..++.++.+.
T Consensus        83 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~  120 (345)
T 3f4l_A           83 K-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT  120 (345)
T ss_dssp             H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             H-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            3       3456777777543  3456777888888887776543

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.40  E-value=1.1e-06  Score=83.88  Aligned_cols=111  Identities=14%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcE-EEEcCCccchhHHHh----CC---CccCC----CHHHHhh--cCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS----LG---AKYQP----SPDEVAA--SCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V-~~~d~~~~~~~~~~~----~g---~~~~~----~~~~~~~--~aDivi~  133 (359)
                      +++++|||||+|.||...+..+... +++| .++|+++++.+.+.+    .|   ...+.    +.+++++  +.|+|++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i   97 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV   97 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence            4557999999999999999998875 5675 478999887766543    34   45666    8999997  5899999


Q ss_pred             eeCChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          134 MLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       134 ~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      |+|...+.+.++       ..++.|+.|+..  ......+.+++.+..++.+..+
T Consensus        98 ~tp~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           98 SSPWEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             CCCGGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             cCCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            998665554443       345677765543  2345667778888887776554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.40  E-value=5.3e-07  Score=81.62  Aligned_cols=91  Identities=13%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh---CC------CccC-CCHHHHhhcCCEEEEeeCChh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQ-PSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~---~g------~~~~-~~~~~~~~~aDivi~~~p~~~  139 (359)
                      |||+|||+|.||..+|..|+..|+  +|.++|+++++.+....   ..      .... .+ .+.+++||+||++++.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            589999999999999999999999  99999998765443211   11      1111 23 356889999999995433


Q ss_pred             H---------------HHHHhcccccccccCCCCCEEEeccCC
Q 018213          140 S---------------AMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       140 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .               .+.++   +++.+. .+++++++.++.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tNP  118 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSNP  118 (304)
T ss_dssp             --------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSSS
T ss_pred             CCCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecCc
Confidence            1               13333   344333 578888876553

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.40  E-value=8e-07  Score=79.40  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=80.3

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC------C--CccC--CCHHHHhhcCCEEEEeeC
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL------G--AKYQ--PSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~------g--~~~~--~~~~~~~~~aDivi~~~p  136 (359)
                      +++++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+.      +  +...  +++++.+.++|+||.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            3678999999999999999999999998 699999998877665432      1  1122  377788889999999998


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....-..-.   .--...++++.+++|+.-.+.. + .+.+..++.|...++
T Consensus       204 ~Gm~~~~~~---pi~~~~l~~~~~v~DlvY~P~~-T-~ll~~A~~~G~~~~~  250 (283)
T 3jyo_A          204 MGMPAHPGT---AFDVSCLTKDHWVGDVVYMPIE-T-ELLKAARALGCETLD  250 (283)
T ss_dssp             TTSTTSCSC---SSCGGGCCTTCEEEECCCSSSS-C-HHHHHHHHHTCCEEC
T ss_pred             CCCCCCCCC---CCCHHHhCCCCEEEEecCCCCC-C-HHHHHHHHCcCeEeC
Confidence            543211100   0012356788999998665433 2 355555666665544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.39  E-value=1.7e-07  Score=83.62  Aligned_cols=114  Identities=17%  Similarity=0.126  Sum_probs=79.2

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C---CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G---AKYQPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g---~~~~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +++++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. +   -....+.+++..++|+||.++|......
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            3678999999999999999999999996 899999998877666542 1   0112245555578999999998764322


Q ss_pred             H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe-eec
Q 018213          143 D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE  188 (359)
Q Consensus       143 ~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~-~~~  188 (359)
                      . .+  .   ...++++.+++|+...+ ..+ .+.+..++.|+. .++
T Consensus       203 ~~~l--~---~~~l~~~~~V~DlvY~P-~~T-~ll~~A~~~G~~~~~~  243 (281)
T 3o8q_A          203 LPAI--D---PVIFSSRSVCYDMMYGK-GYT-VFNQWARQHGCAQAID  243 (281)
T ss_dssp             -CSC--C---GGGEEEEEEEEESCCCS-SCC-HHHHHHHHTTCSEEEC
T ss_pred             CCCC--C---HHHhCcCCEEEEecCCC-ccC-HHHHHHHHCCCCEEEC
Confidence            1 12  1   23467889999997764 333 355666777765 444

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.39  E-value=1.2e-06  Score=81.07  Aligned_cols=109  Identities=17%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~  144 (359)
                      ++++|||||+|.||.. .+..+... +++|. ++|+++++.+. ...+...+.+.++++.+  .|+|++|+|...+...+
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   84 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA   84 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            3578999999999997 78888765 67765 78998765441 11256778899999976  89999999976665554


Q ss_pred             hcccccccccCCCCCEEEec-c-CCChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGYVDV-S-TVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~-s-~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .       ..++.|+.|+.- - .....+.+++.+..++.++.+
T Consensus        85 ~-------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~  121 (352)
T 3kux_A           85 Q-------SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL  121 (352)
T ss_dssp             H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCE
T ss_pred             H-------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            4       345667655533 2 345677788888887777654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.39  E-value=3.3e-07  Score=83.54  Aligned_cols=95  Identities=15%  Similarity=0.290  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchh--HHH-hCCC------cc--CCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLI-SLGA------KY--QPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~-~~g~------~~--~~~~~~~~~~aDivi~~~  135 (359)
                      ...|||+|||+|.||..++..|+..|+  +|+++|+++++.+  ... ..+.      ..  ..+. +.++++|+|++++
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v   83 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITA   83 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECC
Confidence            445899999999999999999999999  9999999876554  121 1222      11  1233 5678999999999


Q ss_pred             CChh---------------HHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          136 ADPE---------------SAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       136 p~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +.+.               ..+.++   +.+.+ ..+++++++.+++.
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~---~~i~~-~~~~~~vi~~~Np~  127 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIM---PNLVK-VAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHH---HHHHH-HCTTSEEEECCSSH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH---HHHHH-hCCCceEEEecCch
Confidence            4321               111333   34433 35788888876643

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=98.38  E-value=2.2e-05  Score=67.95  Aligned_cols=114  Identities=14%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC
Q 018213          114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS  192 (359)
Q Consensus       114 g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~  192 (359)
                      |++++++..|+++++|++|+-+|....+..++   +++++.++.|++|.|+++.++...-...+.++++.+.+-. ||- 
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa-  203 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG-  203 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS-
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC-
Confidence            67888899999999999999999999899999   9999999999999999999988766666666655554444 331 


Q ss_pred             CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       193 ~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                       ..+.. .|....-.+ .+++..+++.++.++.++.++.+..
T Consensus       204 -aVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPA  243 (358)
T 2b0j_A          204 -CVPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPA  243 (358)
T ss_dssp             -SCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEH
T ss_pred             -CCCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecch
Confidence             12222 333332222 3899999999999999999987754

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.37  E-value=1.7e-06  Score=80.34  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCChhhH-HHHHHHHHCCCcEE-EEcCCccchhHHHhC-C-CccCCCHHHHhhc--CCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGT-PMAQNLLKAGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAAS--CDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~-~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~-g-~~~~~~~~~~~~~--aDivi~~~p~~~~~~  142 (359)
                      +++.+|||||+|.+|. .++..+...+.++. ++|+++++.+.+.+. + ...+.+.++++.+  .|+|++++|...+.+
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~  103 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE  103 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            4557999999999995 57777777888854 789998887776553 4 5678899999975  899999998554444


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCe
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      .+.       ..++.|+.|+..  -.....+.+++.+..++.++.
T Consensus       104 ~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  141 (361)
T 3u3x_A          104 LAI-------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRI  141 (361)
T ss_dssp             HHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCC
T ss_pred             HHH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence            443       345566655543  234566777788877766543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.36  E-value=1.5e-06  Score=77.33  Aligned_cols=110  Identities=25%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CC--c-cCCCHHHHh-hcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--K-YQPSPDEVA-ASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--~-~~~~~~~~~-~~aDivi~~~p~~~~~~~  143 (359)
                      +.++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. +.  . ...+.+++. ..+|+||.++|.+.. ..
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~  195 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GD  195 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CC
Confidence            677999999999999999999999999999999998776665532 11  1 112334443 489999999986543 11


Q ss_pred             Hhcccccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe
Q 018213          144 VACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       144 ~~~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      +    ..+ ...++++.+++|+...+. .+ .+.+..++.|..
T Consensus       196 ~----~~i~~~~l~~~~~v~D~~y~p~-~t-~~~~~a~~~G~~  232 (271)
T 1nyt_A          196 I----PAIPSSLIHPGIYCYDMFYQKG-KT-PFLAWCEQRGSK  232 (271)
T ss_dssp             C----CCCCGGGCCTTCEEEESCCCSS-CC-HHHHHHHHTTCC
T ss_pred             C----CCCCHHHcCCCCEEEEeccCCc-CC-HHHHHHHHcCCC
Confidence            1    111 123578899999977643 23 345556666654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.35  E-value=6.4e-07  Score=83.14  Aligned_cols=97  Identities=22%  Similarity=0.275  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-------CCHHHHhhcCCEEEEeeCChhH-
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAASCDVTFAMLADPES-  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~~aDivi~~~p~~~~-  140 (359)
                      +++++|.|+|+|.+|+.+++.++..|.+|+++||++++.+.+.+.+....       .++.+.+..+|+||.+++.+.. 
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            55689999999999999999999999999999999887776654432211       2345667789999999965431 


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ...++  .++.++.|+++.+++|++..
T Consensus       245 ~~~li--~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILV--PASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCB--CHHHHTTSCTTCEEEETTCT
T ss_pred             CCeec--CHHHHhhCCCCCEEEEEecC
Confidence            11111  13345678899999999753

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.34  E-value=1.2e-06  Score=81.39  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhhc--CCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAAS--CDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~--aDivi~~~p~~~~~~  142 (359)
                      ++++||||||+|.||+. .+..+... +++|. ++|+++++..  .+. ++..+.+.++++.+  .|+|++|+|...+..
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   80 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYE   80 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            44578999999999997 78877765 67765 7899876532  222 56778899999986  899999998665554


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        81 ~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~  120 (362)
T 3fhl_A           81 YAG-------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS  120 (362)
T ss_dssp             HHH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHH-------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            443       345566655543  23466777888888877776543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.34  E-value=2e-06  Score=77.06  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      +.+||+|+|+ |+||+.+++.+.+.|+++. +..+|.+. +.  ..|+..+.+++|+..  ..|++++++| +.....++
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP-~~~~~~~~   81 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVP-APFCKDSI   81 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCC-GGGHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecC-HHHHHHHH
Confidence            3478999998 9999999999998898843 33334321 11  247778889999988  8999999998 55666665


Q ss_pred             cccccccccCCCC-CEEEeccCCC-hHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPG-KGYVDVSTVD-GDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~-~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  188 (359)
                         .+..+   .| ..+|..+.+. ..+.+++.+..++.++.+++
T Consensus        82 ---~ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG  120 (288)
T 2nu8_A           82 ---LEAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  120 (288)
T ss_dssp             ---HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             ---HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence               33333   33 2344455553 44566888888888887775

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.33  E-value=3.8e-07  Score=84.78  Aligned_cols=113  Identities=12%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHH---
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESA---  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~---  141 (359)
                      ..+.||+|||+| +|+..++.+.+.  ++++. ++|+++++.+.+.+ .|+..+++.++++.+.|++++++|.+.+.   
T Consensus         5 ~~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~   83 (372)
T 4gmf_A            5 SPKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAG   83 (372)
T ss_dssp             --CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHH
T ss_pred             CCCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhH
Confidence            345789999999 899988888765  56765 78999888777654 58888899999999999999999865431   


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ..+.      ...++.|..|+.-=-..+.+.+++.+..+++|+.+.-
T Consensus        84 ~~~a------~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v  124 (372)
T 4gmf_A           84 TQLA------RHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWI  124 (372)
T ss_dssp             HHHH------HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHH------HHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEE
Confidence            1222      2345567666544333566777888888887876543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.33  E-value=2.1e-06  Score=78.18  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----h------CC--CccCCCHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S------LG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~------~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+||+|||+|.||..+|..|+..|+ +|.++|+++++++...    +      ..  +..+.+. +.+++||+||+++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            4789999999999999999999998 9999999987654311    1      01  2333566 6789999999998

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.33  E-value=3.5e-06  Score=76.71  Aligned_cols=109  Identities=9%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhC--CCccCCCHHHHh-----------hcCCEEEEee
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVA-----------ASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~-----------~~aDivi~~~  135 (359)
                      +++|||||+ |.||...+..+...+.++. ++|+++++. .+.+.  +...+.+.++++           .+.|+|++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t   81 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS   81 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence            478999999 7899999999998887754 788887763 23222  566778999887           4689999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      |...+...+.       ..++.|+.|+.-  -...+.+.+++.+..++.++.+.
T Consensus        82 P~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~  128 (318)
T 3oa2_A           82 PNYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY  128 (318)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             CcHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence            8665555444       345566666543  23456777888888877776543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.33  E-value=3.7e-07  Score=81.31  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C----CccCCCHHHHhh-cCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAA-SCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~-~aDivi~~~p~~~~~~  142 (359)
                      ++++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. +    +. ..+++++.+ ++|+||.++|.+... 
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~DivIn~t~~~~~~-  194 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ-AVSMDSIPLQTYDLVINATSAGLSG-  194 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCCSCCSEEEECCCC-----
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeE-EeeHHHhccCCCCEEEECCCCCCCC-
Confidence            677999999999999999999999999999999998877666532 1    11 123344433 899999999865432 


Q ss_pred             HHhcccccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe-eec
Q 018213          143 DVACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE  188 (359)
Q Consensus       143 ~~~~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~-~~~  188 (359)
                      .+    ..+ ...++++.+++|++..+..++. +.+..++.|.. +++
T Consensus       195 ~~----~~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~  237 (272)
T 1p77_A          195 GT----ASVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD  237 (272)
T ss_dssp             -------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred             CC----CCCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence            21    111 1234678899999875544233 45556666665 543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.32  E-value=1.6e-06  Score=80.34  Aligned_cols=108  Identities=12%  Similarity=0.168  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhHHHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMD  143 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~  143 (359)
                      ++++|||||+|.||.. .+..+... +++|. ++|+++++..  .+. ++..+.+.++++.  +.|+|++|+|...+.+.
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   81 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEH   81 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence            4578999999999997 77777665 67764 7888875422  223 5677889999998  68999999997666555


Q ss_pred             HhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          144 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      +.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        82 ~~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  119 (358)
T 3gdo_A           82 TM-------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLL  119 (358)
T ss_dssp             HH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             HH-------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence            44       345567666543  1345677788888887776544

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.32  E-value=1.6e-06  Score=83.48  Aligned_cols=111  Identities=15%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcC----ChhhHHHHHHHHHC--CCcE-EEEcCCccchhHHHhC-CCc---cCCCHHHHhh--cCCEEEEee
Q 018213           69 ELPGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GAK---YQPSPDEVAA--SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~----G~iG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~---~~~~~~~~~~--~aDivi~~~  135 (359)
                      +++++|||||+    |.||...+..|...  +++| .++|+++++.+.+.+. |+.   .+.+.+++++  +.|+|++|+
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            55689999999    99999999999886  6775 4789998877766543 654   7789999996  589999999


Q ss_pred             CChhHHHHHhcccccccccCCCC------C-EEEec-cCCChHHHHHHHHHHHhcC-Cee
Q 018213          136 ADPESAMDVACGKHGAASGMGPG------K-GYVDV-STVDGDTSKLINGHIKATG-ASF  186 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~------~-~vi~~-s~~~~~~~~~l~~~l~~~~-~~~  186 (359)
                      |...+.+.++       ..++.|      + +++.- ......+.+++.+..++.+ +.+
T Consensus       117 p~~~H~~~~~-------~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          117 KVPEHYEVVK-------NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT  169 (479)
T ss_dssp             CHHHHHHHHH-------HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             CcHHHHHHHH-------HHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            8655544443       234445      4 55554 3445677788888887766 543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.32  E-value=3.6e-06  Score=76.41  Aligned_cols=109  Identities=10%  Similarity=0.102  Sum_probs=78.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcE-EEEcCCccchhHHHhC--CCccCCCHHHHh----------hcCCEEEEeeC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISL--GAKYQPSPDEVA----------ASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~--g~~~~~~~~~~~----------~~aDivi~~~p  136 (359)
                      ++||||||+ |.||...+..+...+.++ .++|+++++. .+.+.  +...+.+.++++          .+.|+|++|+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            478999999 789999999999888775 4789988763 23222  466778999987          46899999998


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      ...+...+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        82 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~  127 (312)
T 3o9z_A           82 NHLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRVY  127 (312)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             chhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            665554443       345567766643  23456777888888887776543

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.31  E-value=2.1e-07  Score=87.52  Aligned_cols=98  Identities=16%  Similarity=0.048  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCE-EEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV-TFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDi-vi~~~p~~~~~~~~~~  146 (359)
                      +++++|+|+|+|+||+.+|+.+.. +|++|+++++.....  ....|+    +++++++.+|. .++ +|. +++++ + 
T Consensus       210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~--~~~~gv----dl~~L~~~~d~~~~l-~~l-~~t~~-i-  279 (419)
T 1gtm_A          210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI--YNPDGL----NADEVLKWKNEHGSV-KDF-PGATN-I-  279 (419)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE--EEEEEE----CHHHHHHHHHHHSSS-TTC-TTSEE-E-
T ss_pred             cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc--cCccCC----CHHHHHHHHHhcCEe-ecC-ccCee-e-
Confidence            789999999999999999999999 999999885432211  111122    55666554332 111 344 34455 3 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI  179 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  179 (359)
                       +.+.+..|+. .++||++++..+++++ .++|
T Consensus       280 -~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL  309 (419)
T 1gtm_A          280 -TNEELLELEV-DVLAPAAIEEVITKKN-ADNI  309 (419)
T ss_dssp             -CHHHHHHSCC-SEEEECSCSCCBCTTG-GGGC
T ss_pred             -CHHHHHhCCC-CEEEECCCcccCCHHH-HHHh
Confidence             3444556776 6999999999998877 3555

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.30  E-value=1.6e-06  Score=76.97  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=78.8

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C---CccCCCHHHHh-hcCCEEEEeeCChhHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G---AKYQPSPDEVA-ASCDVTFAMLADPESA  141 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g---~~~~~~~~~~~-~~aDivi~~~p~~~~~  141 (359)
                      +++++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. +   +.. .+.+++- .++|+||.++|....-
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCC
Confidence            3678999999999999999999999996 899999999887776543 1   111 2334433 6899999999865431


Q ss_pred             HH-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe-eec
Q 018213          142 MD-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE  188 (359)
Q Consensus       142 ~~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~-~~~  188 (359)
                      .. .+  .   .+.++++.+++|+.-.+. .+ .+.+..++.|+. .++
T Consensus       196 ~~~~i--~---~~~l~~~~~V~DlvY~P~-~T-~ll~~A~~~G~~~~~~  237 (272)
T 3pwz_A          196 DLPPL--P---ADVLGEAALAYELAYGKG-LT-PFLRLAREQGQARLAD  237 (272)
T ss_dssp             CCCCC--C---GGGGTTCSEEEESSCSCC-SC-HHHHHHHHHSCCEEEC
T ss_pred             CCCCC--C---HHHhCcCCEEEEeecCCC-CC-HHHHHHHHCCCCEEEC
Confidence            11 11  1   235678999999976643 33 365666666765 443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.28  E-value=1.5e-06  Score=82.08  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHC---------CCcEE-EEcCCccchhHHHhC-CC-ccCCCHHHHhh--cCCEEEEeeC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKA---------GCDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~---------g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~~p  136 (359)
                      +.||||||+|.||+..+..+++.         +.+|. ++|+++++.+.+.+. |+ ..+++.+++++  +.|+|++|+|
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp  105 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP  105 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence            36899999999999999888764         34544 789999887776553 55 46789999996  4799999999


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ...+...++       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       106 ~~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  150 (412)
T 4gqa_A          106 NHLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT  150 (412)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cHHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence            666655554       345667766543  2335677788888887776544

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.28  E-value=3.1e-06  Score=77.48  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCChhhH-HHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~-~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~  142 (359)
                      ++++||||||+|.||. ..+..+... +.+|. ++|+++++      .|+..+.+.++++++   .|+|++++|...+.+
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~   96 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYE   96 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence            5567999999999999 789888875 56754 68888653      367778899999876   899999998544433


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeeec
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .+.       ..++.|+.|+..  -.....+.+++.+..++.++.+..
T Consensus        97 ~~~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v  137 (330)
T 4ew6_A           97 AAY-------KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFA  137 (330)
T ss_dssp             HHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHH-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence            332       345667766643  123566777888888777765443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.28  E-value=7.4e-07  Score=79.13  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHH---HH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAM---DV  144 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~---~~  144 (359)
                      .++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. +.....++.  +.++|+||.++|......   ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            45789999999999999999999997 799999998887776543 332222222  468999999998654211   01


Q ss_pred             hcccccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          145 ACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       145 ~~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .    .+ ...++++.+++|+.-.+ ..+ .+.+..++.|..+++.
T Consensus       196 ~----~~~~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~i~G  235 (271)
T 1npy_A          196 L----AFPKAFIDNASVAFDVVAMP-VET-PFIRYAQARGKQTISG  235 (271)
T ss_dssp             C----SSCHHHHHHCSEEEECCCSS-SSC-HHHHHHHHTTCEEECH
T ss_pred             C----CCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCCCEEECC
Confidence            0    01 12356788999997644 333 5767777777776653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.28  E-value=2.2e-06  Score=79.10  Aligned_cols=107  Identities=9%  Similarity=0.121  Sum_probs=75.1

Q ss_pred             CeEEEEcCChhhH-HHHHHHHHC-CCcEE-EEcCCccchhHHHh----CCCccCCCHHHHhhc--CCEEEEeeCChhHHH
Q 018213           72 GRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLIS----LGAKYQPSPDEVAAS--CDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~-~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~  142 (359)
                      +||||||+|.||. ..+..+... +++|. ++|++  +.+.+.+    .++..+.++++++.+  .|+|++|+|...+..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD   80 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence            6899999999999 577777664 57765 78887  3344432    367788899999976  899999998665554


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeee
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        81 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~  120 (349)
T 3i23_A           81 LAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVM  120 (349)
T ss_dssp             HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            443       345566665543  13356677788888877776543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.28  E-value=1.2e-06  Score=83.46  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=79.8

Q ss_pred             CCCeEEEEcC----ChhhHHHHHHHHHC--CCcE-EEEcCCccchhHHHhC-CCc---cCCCHHHHhh--cCCEEEEeeC
Q 018213           70 LPGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GAK---YQPSPDEVAA--SCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~----G~iG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~---~~~~~~~~~~--~aDivi~~~p  136 (359)
                      ++++|||||+    |.||..+++.|...  +++| .++|+++++.+.+.+. |+.   .+.+.++++.  +.|+|++|+|
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp   98 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ   98 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence            4579999999    99999999999886  6775 5789998877666543 554   6789999997  5899999998


Q ss_pred             ChhHHHHHhcccccccccCCCC------C-EEEec-cCCChHHHHHHHHHHHhcCCee
Q 018213          137 DPESAMDVACGKHGAASGMGPG------K-GYVDV-STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~------~-~vi~~-s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ...+...+.       ..++.|      + +++.- ......+.+++.+..++.++.+
T Consensus        99 ~~~H~~~~~-------~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~  149 (438)
T 3btv_A           99 VASHYEVVM-------PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT  149 (438)
T ss_dssp             HHHHHHHHH-------HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred             cHHHHHHHH-------HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence            555544443       223344      4 45542 3446677788888887766544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.27  E-value=1.4e-06  Score=74.85  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=53.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCcc----CCC---HHHH-hhcCCEEEEeeCChhH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPS---PDEV-AASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~---~~~~-~~~aDivi~~~p~~~~  140 (359)
                      |+|.|+|+|.+|+.+++.|...|++|+++|+++++.+.+.+ .+...    ..+   ++++ +.++|+|++++|.+..
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV   78 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence            57999999999999999999999999999999988777654 34322    112   2222 4679999999976543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.25  E-value=3.7e-06  Score=73.09  Aligned_cols=102  Identities=12%  Similarity=0.140  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcE-EEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      -..|||+++|+|+||+.+++.  . ++++ .+|+   ++..++   |+..++++++++.++|+|+.|.+ ...+++.+  
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~-~~av~e~~--   77 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECAS-PEAVKEYS--   77 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSC-HHHHHHHH--
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCC-HHHHHHHH--
Confidence            355999999999999999998  4 7876 4566   333333   67777889999889999999984 66665543  


Q ss_pred             cccccccCCCCCEEEeccCCC---hHHHHHHHHHHHhcCCee
Q 018213          148 KHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGASF  186 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~---~~~~~~l~~~l~~~~~~~  186 (359)
                          ...|+.|.-++.+|.+.   +...+.|.++.++.+..+
T Consensus        78 ----~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l  115 (253)
T 1j5p_A           78 ----LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV  115 (253)
T ss_dssp             ----HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred             ----HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence                34577899999888764   344466777777777665

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.21  E-value=6.3e-06  Score=74.67  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh---C-------C--CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS---L-------G--AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +||+|||+|.||..++..++..|+ +|.++|+++++.+....   .       .  +..+.+. +.+++||+||++++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999999997 99999998865543211   1       1  2223566 6689999999998543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.21  E-value=2.4e-06  Score=81.72  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhC-CCcc----CC---CHHHHhhcCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-GAKY----QP---SPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~----~~---~~~~~~~~aDivi~~~p~~~  139 (359)
                      +.+++|.|+|+|.+|+.++..|.+. |++|++++|++++.+.+.+. ++..    ..   ++.++++++|+||.++|...
T Consensus        21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~  100 (467)
T 2axq_A           21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTF  100 (467)
T ss_dssp             --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred             CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence            6678999999999999999999987 78999999998877766543 3321    11   34566789999999998543


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      . ..+.   .   ..+.++..+++.+-..+. ...+.+..++.|+.++.
T Consensus       101 ~-~~v~---~---a~l~~g~~vvd~~~~~p~-~~~Ll~~Ak~aGv~~i~  141 (467)
T 2axq_A          101 H-PNVV---K---SAIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMN  141 (467)
T ss_dssp             H-HHHH---H---HHHHHTCEEEECSCCCHH-HHHHHHHHHHHTCEEEC
T ss_pred             h-HHHH---H---HHHhcCCEEEEeecCCHH-HHHHHHHHHHcCCEEEe
Confidence            2 2233   2   234567788887654444 34666666677776665

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.20  E-value=9.3e-07  Score=79.69  Aligned_cols=92  Identities=11%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             cCCCCeEEEEcCChh-hHHHHHHHHHCCCcEEEEcCCccch----hHHHhCCCcc-----C--CCHHHHhhcCCEEEEee
Q 018213           68 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKY-----Q--PSPDEVAASCDVTFAML  135 (359)
Q Consensus        68 ~~~~~~igiiG~G~i-G~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~-----~--~~~~~~~~~aDivi~~~  135 (359)
                      ++.++++.|||.|.| |+.+|+.|...|.+|++++|+..+.    +.+...-...     +  .++++.++++||||.++
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt  253 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  253 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence            488899999999986 9999999999999999999974322    1111110111     2  46788899999999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +.+.   -++  ..   +.+++|+++||++..
T Consensus       254 g~p~---~vI--~~---e~vk~GavVIDVgi~  277 (320)
T 1edz_A          254 PSEN---YKF--PT---EYIKEGAVCINFACT  277 (320)
T ss_dssp             CCTT---CCB--CT---TTSCTTEEEEECSSS
T ss_pred             CCCc---cee--CH---HHcCCCeEEEEcCCC
Confidence            7542   124  22   346899999999764

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.20  E-value=3.7e-06  Score=73.72  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++.|||.|. +|+.+|..|...|.+|++++++.              .++++.+++|||||.+++.+.    ++  
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I--  207 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGRPG----FL--  207 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSCTT----CB--
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCCCc----cc--
Confidence            7889999999986 89999999999999999998642              467788999999999998643    34  


Q ss_pred             cccccccCCCCCEEEeccCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ..   +++++|+++||++...
T Consensus       208 ~~---~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          208 NR---EMVTPGSVVIDVGINY  225 (276)
T ss_dssp             CG---GGCCTTCEEEECCCEE
T ss_pred             cH---hhccCCcEEEEeccCc
Confidence            22   3479999999997643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.19  E-value=3.4e-06  Score=74.92  Aligned_cols=78  Identities=27%  Similarity=0.372  Sum_probs=63.3

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHH--HHhhcCCEEEEeeCChhHHHH
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~--~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+++++++.|||.|. +|+.+|..|...|.+|++++++..              +++  +.+++|||||.++|.+.    
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~----  222 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPG----  222 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTT----
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCC----
Confidence            348899999999987 799999999999999999987432              344  78899999999998642    


Q ss_pred             HhcccccccccCCCCCEEEeccCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ++  ..   +++++|+++||++..
T Consensus       223 ~I--~~---~~vk~GavVIDvgi~  241 (300)
T 4a26_A          223 YV--KG---EWIKEGAAVVDVGTT  241 (300)
T ss_dssp             CB--CG---GGSCTTCEEEECCCE
T ss_pred             CC--cH---HhcCCCcEEEEEecc
Confidence            34  22   357999999999654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.19  E-value=1.2e-06  Score=78.11  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhHHH--H
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAM--D  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~~p~~~~~~--~  143 (359)
                      ++++++.|+|+|.+|++++..|...|. +|++++|++++.+.+.+. +.  ...++++ + ++|+||.++|......  .
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~-~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE-FKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTT-SEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-cCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            678999999999999999999999998 899999999887766542 21  1122333 4 8999999998642211  0


Q ss_pred             -HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          144 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       .+     -...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       197 ~pi-----~~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~~  235 (282)
T 3fbt_A          197 SPV-----DKEVVAKFSSAVDLIYNPVET--LFLKYARESGVKAVN  235 (282)
T ss_dssp             CSS-----CHHHHTTCSEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             CCC-----CHHHcCCCCEEEEEeeCCCCC--HHHHHHHHCcCeEeC
Confidence             01     123467889999996544332  466666677766554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.19  E-value=4.6e-06  Score=75.85  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH-h--CC------CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI-S--LG------AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~-~--~g------~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +++||+|||+|.+|..++..|+..|+  +|.++|+++++.+... +  ..      ++...+..+.+++||+|+++.+.+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p   85 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   85 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            35789999999999999999999887  8999999876654311 1  11      112223356689999999999755


Q ss_pred             hH---------------HHHHhcccccccccCCCCCEEEecc
Q 018213          139 ES---------------AMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       139 ~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ..               ++.+.   +.+.+. .+++++++.+
T Consensus        86 ~k~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~t  123 (318)
T 1y6j_A           86 RKPGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVVS  123 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEECS
T ss_pred             CCCCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEec
Confidence            31               22333   333333 5788888863

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.18  E-value=6.4e-06  Score=74.50  Aligned_cols=115  Identities=13%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC---ccchhHHHhC-----CC--c--cCCC---HHHHhhcCCEE
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLISL-----GA--K--YQPS---PDEVAASCDVT  131 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~---~~~~~~~~~~-----g~--~--~~~~---~~~~~~~aDiv  131 (359)
                      +++++++.|+|+|.+|++++..|+..|. +|++++|+   .++.+.+.+.     +.  .  ..++   +.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            3778999999999999999999999998 89999999   5555554421     21  1  1223   34567799999


Q ss_pred             EEeeCChhHHH--H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          132 FAMLADPESAM--D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       132 i~~~p~~~~~~--~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |.++|....-.  . .+   . ....++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       231 INaTp~Gm~~~~~~~p~---~-~~~~l~~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~~  284 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLL---P-SADMLRPELIVSDVVYKPTKT--RLLEIAEEQGCQTLN  284 (315)
T ss_dssp             EECSSTTSTTSTTCCSC---C-CGGGCCTTCEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             EECccCCCCCCCCCCCC---C-cHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEeC
Confidence            99998542211  0 01   0 124567889999996654432  455666666765544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.18  E-value=5.3e-06  Score=75.44  Aligned_cols=70  Identities=10%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHH----Hh------CCCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS------LGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +.++||+|||+|.+|..++..|...|.  +|.++|+++++.+..    .+      .......+..+.+++||+|+++.+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAG   83 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCC
Confidence            456899999999999999999988774  899999987554421    11      112222244677899999999986


Q ss_pred             Ch
Q 018213          137 DP  138 (359)
Q Consensus       137 ~~  138 (359)
                      .+
T Consensus        84 ~~   85 (317)
T 3d0o_A           84 AA   85 (317)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.18  E-value=4.1e-06  Score=75.15  Aligned_cols=93  Identities=11%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHh----C--C--CccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----L--G--AKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~----~--g--~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+|.||.++|..|+..|+  +|.+||+++++.+.    +.+    .  .  +....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            689999999999999999999888  89999999876541    111    1  1  222345 7788999999999854


Q ss_pred             hh---H--------HHHHhcc-cccccccCCCCCEEEeccC
Q 018213          138 PE---S--------AMDVACG-KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       138 ~~---~--------~~~~~~~-~~~~~~~l~~~~~vi~~s~  166 (359)
                      +.   .        ...++.. -+.+.+ ..|++++++.++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~-~~p~a~iivvsN  119 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVE-NAPESKILVVTN  119 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHT-TSTTCEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeCC
Confidence            31   1        1112200 023333 368889988863

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.18  E-value=2.9e-06  Score=80.91  Aligned_cols=111  Identities=22%  Similarity=0.212  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C-Ccc----CC---CHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-AKY----QP---SPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g-~~~----~~---~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ++++|.|+|+|.||+.+++.|...|++|.+++|++++.+.+.+. + +..    ..   +++++++++|+|+.++|....
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence            35789999999999999999999999999999998766554432 1 111    12   344677889999999985432


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      . .+.   .   ..+.+|..+++.+...+. ...+.+..++.|+.++.
T Consensus        82 ~-~i~---~---a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~  121 (450)
T 1ff9_A           82 A-TVI---K---SAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMN  121 (450)
T ss_dssp             H-HHH---H---HHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEEC
T ss_pred             h-HHH---H---HHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEe
Confidence            2 222   1   223456677776544443 34666666677776654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.18  E-value=7e-06  Score=74.65  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH----HHh------CCCc--cCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LGAK--YQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~~--~~~~~~~~~~~aDivi~~~  135 (359)
                      ++.+||+|||+|.||..+|..|+..|+ +|.++|+++++.+.    +.+      ....  .+.+. +.+++||+||++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            556899999999999999999999998 99999999876532    111      1222  23455 7789999999997


Q ss_pred             C
Q 018213          136 A  136 (359)
Q Consensus       136 p  136 (359)
                      +
T Consensus        84 g   84 (324)
T 3gvi_A           84 G   84 (324)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.15  E-value=5.4e-06  Score=73.39  Aligned_cols=93  Identities=19%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHC-CCcEEE-EcCCccch-----hHHH--hCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTV-WNRTKSKC-----DPLI--SLGAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~-----~~~~--~~g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      ++++||+|+| +|+||+.+++.+... ++++.. +|+++...     ..+.  ..|+..++++++++.++|+||-+++ +
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p   83 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-P   83 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-H
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-H
Confidence            5568999999 899999999998765 577664 68764321     1111  1256678899999999999999985 6


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ..+...+   .   ..++.|..+|..+++.
T Consensus        84 ~a~~~~~---~---~al~~G~~vVigTTG~  107 (272)
T 4f3y_A           84 EGTLVHL---D---AALRHDVKLVIGTTGF  107 (272)
T ss_dssp             HHHHHHH---H---HHHHHTCEEEECCCCC
T ss_pred             HHHHHHH---H---HHHHcCCCEEEECCCC
Confidence            6665555   2   2345666666655654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.15  E-value=9.2e-06  Score=73.81  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH----HHh------CCCcc--CCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LGAKY--QPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~------~g~~~--~~~~~~~~~~aDivi~~~  135 (359)
                      ++.+||+|||+|.||..+|..|+..|+ +|.++|+++++.+.    +.+      .....  ..+ .+.+++||+||++.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~a   81 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTA   81 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcC
Confidence            456899999999999999999999888 99999999876542    211      12222  234 46789999999997


Q ss_pred             CC
Q 018213          136 AD  137 (359)
Q Consensus       136 p~  137 (359)
                      +.
T Consensus        82 g~   83 (321)
T 3p7m_A           82 GV   83 (321)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.15  E-value=7e-06  Score=72.45  Aligned_cols=78  Identities=23%  Similarity=0.313  Sum_probs=64.2

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||.|+ +|+.+|+.|...|.+|++++++.              .++.+.++++|+||.+++.+.    ++
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI  216 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FI  216 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CB
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cC
Confidence            348899999999997 59999999999999999998654              367788999999999998553    34


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        ..   +.+++|+++||++..
T Consensus       217 --~~---~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          217 --PG---DWIKEGAIVIDVGIN  233 (288)
T ss_dssp             --CT---TTSCTTCEEEECCCE
T ss_pred             --CH---HHcCCCcEEEEccCC
Confidence              22   346899999999764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.14  E-value=6.3e-06  Score=72.71  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||.|. +|+.+|..|...|.+|++++++.              .++++.++++|+||.+++.+.    ++
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----~I  218 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPN----FI  218 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTT----CB
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCCCC----CC
Confidence            348899999999988 69999999999999999998642              367788999999999998542    34


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        ..   +++++|+++||++..
T Consensus       219 --~~---~~vk~GavVIDvgi~  235 (285)
T 3l07_A          219 --TA---DMVKEGAVVIDVGIN  235 (285)
T ss_dssp             --CG---GGSCTTCEEEECCCE
T ss_pred             --CH---HHcCCCcEEEEeccc
Confidence              22   357999999999654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.14  E-value=7.1e-06  Score=66.18  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc-cchhHHH---hCCCccC----CC---HHHH-hhcCCEEEEeeCCh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLI---SLGAKYQ----PS---PDEV-AASCDVTFAMLADP  138 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~---~~g~~~~----~~---~~~~-~~~aDivi~~~p~~  138 (359)
                      .++|.|+|+|.+|+.+++.|.+.|++|+++++++ ++.+.+.   ..|+...    .+   ++++ +.++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            3679999999999999999999999999999974 4333332   2233221    12   2333 67899999999755


Q ss_pred             h
Q 018213          139 E  139 (359)
Q Consensus       139 ~  139 (359)
                      .
T Consensus        83 ~   83 (153)
T 1id1_A           83 A   83 (153)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.14  E-value=7e-06  Score=72.91  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=64.6

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++.++++.|||.|+ +|+.+|+.|...|.+|++++++.              .++.+.+++||+||.+++.+.    ++ 
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----~I-  222 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPE----MV-  222 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTT----CB-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------ccHHHHhccCCEEEECCCCcc----cC-
Confidence            48899999999996 69999999999999999997542              367888999999999998653    34 


Q ss_pred             ccccccccCCCCCEEEeccCCCh
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                       ..   +.+++|+++||++....
T Consensus       223 -~~---~~vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          223 -KG---EWIKPGAIVIDCGINYV  241 (301)
T ss_dssp             -CG---GGSCTTCEEEECCCBC-
T ss_pred             -CH---HHcCCCcEEEEccCCCc
Confidence             22   34689999999987543

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=98.14  E-value=9.9e-06  Score=72.47  Aligned_cols=110  Identities=21%  Similarity=0.184  Sum_probs=77.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~  145 (359)
                      +.++|+|+|+ |++|+.+++.+.+.|+++. .+++.....+   ..|+..+.+++|+..  .+|++++++| ++.+..++
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~Ii~vp-~~~~~~~~   81 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME---VLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAA   81 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce---ECCEEeeCCHHHHhhcCCCCEEEEecC-HHHHHHHH
Confidence            3478999998 9999999999998899843 4444321011   247888889999988  8999999997 66777777


Q ss_pred             cccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~  188 (359)
                         ++..+. .- ..+|..+.+.+ .+.+++.+..++.++.++.
T Consensus        82 ---~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig  120 (288)
T 1oi7_A           82 ---LEAAHA-GI-PLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (288)
T ss_dssp             ---HHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             ---HHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence               444332 11 22444555544 4567888888888887775

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.14  E-value=6e-06  Score=72.83  Aligned_cols=78  Identities=22%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||.|. +|+.+|..|...|.+|++++++.              .++++.+++|||||.+++.+.    ++
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I  217 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVN----LL  217 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTT----CB
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCC----cC
Confidence            348899999999988 69999999999999999998753              367788999999999998542    34


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        ..   +++++|+++||++..
T Consensus       218 --~~---~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          218 --RS---DMVKEGVIVVDVGIN  234 (285)
T ss_dssp             --CG---GGSCTTEEEEECCCE
T ss_pred             --CH---HHcCCCeEEEEeccC
Confidence              22   457999999999654

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.13  E-value=4.1e-06  Score=78.26  Aligned_cols=110  Identities=14%  Similarity=0.093  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC--------CcE-EEEcCCccchhHHHhC-CC-ccCCCHHHHhhc--CCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG--------CDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g--------~~V-~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~~  135 (359)
                      |++-+|||||+|.||+..+..+....        .+| .++|+++++.+.+.+. |+ ..+++.++++++  .|+|++|+
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT   83 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            45568999999999999888876532        244 4789998887776543 55 467899999964  79999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHH---HHhcCCe
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGH---IKATGAS  185 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~---l~~~~~~  185 (359)
                      |...+...++       ..++.|+.|+.-  -.....+.++|.+.   .++.++.
T Consensus        84 P~~~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~  131 (390)
T 4h3v_A           84 PGDSHAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIR  131 (390)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCc
Confidence            9766665554       345667766543  22345566667444   4444543

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.11  E-value=6e-06  Score=72.61  Aligned_cols=78  Identities=17%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             cCCCCeEEEEcCChh-hHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           68 DELPGRIGFLGMGIM-GTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~G~i-G~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++.++++.|||.|++ |+.+|+.|...  |.+|++++++.              .++.+.++++|+||.+++.+.    +
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~  216 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAH----L  216 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTT----C
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCc----c
Confidence            488999999999985 99999999998  89999997654              367788999999999998553    3


Q ss_pred             hcccccccccCCCCCEEEeccCCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +  ..   +.+++|+++||++...
T Consensus       217 I--~~---~~vk~GavVIDVgi~r  235 (281)
T 2c2x_A          217 L--TA---DMVRPGAAVIDVGVSR  235 (281)
T ss_dssp             B--CG---GGSCTTCEEEECCEEE
T ss_pred             c--CH---HHcCCCcEEEEccCCC
Confidence            4  22   3468999999997643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.11  E-value=5.3e-06  Score=75.44  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHH----HhC------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      ...+||+|||+|.||..++..++..|.  +|.++|+++++.+..    .+.      ..+...+..+.+++||+||++.|
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~   83 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCC
Confidence            345799999999999999999988774  899999987644321    111      11112234567899999999976


Q ss_pred             Ch
Q 018213          137 DP  138 (359)
Q Consensus       137 ~~  138 (359)
                      .+
T Consensus        84 ~~   85 (316)
T 1ldn_A           84 AN   85 (316)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.11  E-value=7.9e-06  Score=74.34  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHhC------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL------GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~------g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ..+||+|||+|.||..+|..|+..|+  +|.++|+++++.+.    +.+.      ++....+..+.+++||+||++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            45899999999999999999998887  89999998776543    3221      222233345678999999999854

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.10  E-value=8.8e-06  Score=73.22  Aligned_cols=109  Identities=14%  Similarity=0.064  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH----CCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK----AGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~----~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~  141 (359)
                      .++++|||||+|.||+..++.+..    .+.++. ++|++...    ...|+. ..+.+++++  +.|+|++++|...+.
T Consensus         5 ~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~   79 (294)
T 1lc0_A            5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHE   79 (294)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH
T ss_pred             CCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH
Confidence            445799999999999999998864    356654 67775421    122444 469999987  579999999866555


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCeeecC
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      +.+.       ..++.|+.|+.-  ......+.+++.+..+++|+.+..+
T Consensus        80 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~  122 (294)
T 1lc0_A           80 DYIR-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEE  122 (294)
T ss_dssp             HHHH-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence            4443       345567754433  3345677788888888877665443

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.10  E-value=7.9e-06  Score=76.36  Aligned_cols=111  Identities=13%  Similarity=0.128  Sum_probs=79.2

Q ss_pred             CCCCeEEEEc-CChhhHH-HH----HHHHHCC-CcE----------EEEcCCccchhHHHh-CCC-ccCCCHHHHhhc--
Q 018213           69 ELPGRIGFLG-MGIMGTP-MA----QNLLKAG-CDV----------TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--  127 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~-ia----~~l~~~g-~~V----------~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--  127 (359)
                      ++.+|||||| +|.||.. .+    ..+...+ ..+          .++|+++++.+.+.+ .|+ ..+.++++++++  
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~   83 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN   83 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence            4457899999 9999998 77    7776544 222          489999988777654 466 467899999975  


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .|+|++++|...+...+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        84 iD~V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~  137 (383)
T 3oqb_A           84 DTMFFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH  137 (383)
T ss_dssp             CCEEEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            799999998655544443       446677766632  2335667778888887776644

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.09  E-value=1.2e-05  Score=72.72  Aligned_cols=115  Identities=15%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC---ccchhHHHhC-----CCc----cCCCH---HHHhhcCCEE
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLISL-----GAK----YQPSP---DEVAASCDVT  131 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~---~~~~~~~~~~-----g~~----~~~~~---~~~~~~aDiv  131 (359)
                      +++++++.|+|+|.+|++++..|...|. +|++++|+   .++.+.+.+.     +..    ...++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            3678999999999999999999999998 89999999   5555554431     221    12343   4567899999


Q ss_pred             EEeeCChhHHHHHhcccccc---cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          132 FAMLADPESAMDVACGKHGA---ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~---~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |.++|....-..    +..+   ...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       225 INaTp~Gm~~~~----~~~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  278 (312)
T 3t4e_A          225 TNGTKVGMKPLE----NESLIGDVSLLRPELLVTECVYNPHMT--KLLQQAQQAGCKTID  278 (312)
T ss_dssp             EECSSTTSTTST----TCCSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             EECCcCCCCCCC----CCcccCCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEEC
Confidence            999986531110    0111   13567889999986654332  466666677766554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.09  E-value=9.3e-06  Score=71.60  Aligned_cols=79  Identities=27%  Similarity=0.329  Sum_probs=64.3

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .+++++++.|||.|. +|+.+|..|...|.+|+++.++.              .++++.+++|||||.+++.+.    ++
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~----~I  218 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPG----LV  218 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTT----CB
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCC----CC
Confidence            348899999999987 89999999999999999997643              267788999999999998542    34


Q ss_pred             cccccccccCCCCCEEEeccCCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                        ..   +++++|+++||++...
T Consensus       219 --~~---~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          219 --KG---EWIKEGAIVIDVGINR  236 (286)
T ss_dssp             --CG---GGSCTTCEEEECCSCS
T ss_pred             --CH---HHcCCCeEEEEecccc
Confidence              22   3579999999997654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.09  E-value=5.1e-06  Score=74.92  Aligned_cols=92  Identities=10%  Similarity=0.068  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccch---hHHHhC---CCccCCCHHHHhhcCCEEEEeeCC----
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKC---DPLISL---GAKYQPSPDEVAASCDVTFAMLAD----  137 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~---~~~~~~---g~~~~~~~~~~~~~aDivi~~~p~----  137 (359)
                      .++||+|||+|.||..++..+...|+  +|.++|++++..   ..+...   .+....+. +.+++||+||++...    
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG   91 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSS   91 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCC
Confidence            34789999999999999999998888  999999987421   112111   23444566 667999999999721    


Q ss_pred             ---------hhH-HHHHhcccccccccCCCCCEEEeccC
Q 018213          138 ---------PES-AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       138 ---------~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                               +.. .++++   +++.+. .+++++++.|+
T Consensus        92 ~tR~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~sN  126 (303)
T 2i6t_A           92 QSYLDVVQSNVDMFRALV---PALGHY-SQHSVLLVASQ  126 (303)
T ss_dssp             CCHHHHHHHHHHHHHHHH---HHHHHH-TTTCEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEcCC
Confidence                     111 22333   334333 48888888766

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.07  E-value=1.1e-05  Score=72.99  Aligned_cols=67  Identities=12%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHh------CCCccC-CCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS------LGAKYQ-PSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~------~g~~~~-~~~~~~~~~aDivi~~~p~~  138 (359)
                      |||+|||+|.||..+|..++..|+  +|.++|+++++.+.    +.+      ...... .+..+.+++||+||++.+.+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            689999999999999999998886  89999998876442    111      122222 24567789999999998654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.06  E-value=4.5e-06  Score=79.04  Aligned_cols=67  Identities=10%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCChh--hHHHHHHHHH----CCCcEEEEcCCccchhHHHhC---------CCccCCCHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIM--GTPMAQNLLK----AGCDVTVWNRTKSKCDPLISL---------GAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~i--G~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~aDivi~  133 (359)
                      ++++||+|||.|.+  |..++..+..    .| +|.+||+++++++.....         .+..+.++++++++||+||+
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~   81 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVII   81 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEe
Confidence            45589999999997  6899988876    46 999999998765443221         24456789999999999999


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +++
T Consensus        82 air   84 (450)
T 3fef_A           82 SIL   84 (450)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            996

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=98.05  E-value=2e-05  Score=70.75  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~~  147 (359)
                      .++.|+|+ |++|+.+++.+.+.|++ .++..+|.+. +.  -.|+..+.+++++..  ..|++++++| +..+..++  
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp-~~~~~~~v--   87 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVP-APFAKDAV--   87 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHH--
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccC-HHHHHHHH--
Confidence            56888898 99999999999999998 4455555432 11  147888889999988  8999999997 66777776  


Q ss_pred             cccccccCCCCC-EEEeccCCC-hHHHHHHHHHHHhcCCeeec
Q 018213          148 KHGAASGMGPGK-GYVDVSTVD-GDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       148 ~~~~~~~l~~~~-~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  188 (359)
                       ++..+   .|. .+|..+.+. ..+.+++.+..++.++.+++
T Consensus        88 -~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG  126 (294)
T 2yv1_A           88 -FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIG  126 (294)
T ss_dssp             -HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             -HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence             44433   232 244445554 44567888888888887775

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.04  E-value=7.7e-06  Score=78.08  Aligned_cols=67  Identities=19%  Similarity=0.329  Sum_probs=50.4

Q ss_pred             CCeEEEEcCChh--hHHHHHHHHHC----CCcEEEEcCCccchhHHHh--------C----CCccCCCHHHHhhcCCEEE
Q 018213           71 PGRIGFLGMGIM--GTPMAQNLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        71 ~~~igiiG~G~i--G~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi  132 (359)
                      ++||+|||+|.|  |.+++..|+..    |++|.+||+++++++....        .    .+..+.++++.+++||+||
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            479999999997  57677777643    8899999999876543221        1    1334567878899999999


Q ss_pred             EeeCC
Q 018213          133 AMLAD  137 (359)
Q Consensus       133 ~~~p~  137 (359)
                      +++|.
T Consensus        83 iaagv   87 (480)
T 1obb_A           83 NTAMV   87 (480)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99974

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.03  E-value=8.4e-06  Score=74.80  Aligned_cols=106  Identities=9%  Similarity=-0.044  Sum_probs=73.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCCc-cchhHHHh----CC--CccCCCHHHHhhc--CCEEEEeeCChhHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK-SKCDPLIS----LG--AKYQPSPDEVAAS--CDVTFAMLADPESA  141 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~~-~~~~~~~~----~g--~~~~~~~~~~~~~--aDivi~~~p~~~~~  141 (359)
                      +||||||+|.+|...++.+ ..+.+|. ++|+++ ++.+.+.+    .|  ...+++.++++.+  .|+|++++|...+.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~   81 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG   81 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence            6899999999999888777 5567765 688887 45444433    24  4678899999974  89999999855554


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCe
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      +.+.       ..++.|+.|+.-  -.....+.+++.+..++.+..
T Consensus        82 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  120 (337)
T 3ip3_A           82 KILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE  120 (337)
T ss_dssp             HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred             HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence            4443       345566665533  233456777888888777654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.03  E-value=1.1e-05  Score=76.34  Aligned_cols=119  Identities=23%  Similarity=0.312  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH----------CCCcE-EEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK----------AGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~----------~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~  135 (359)
                      ++..+|||||+|.||+.+++.+..          .+.+| .++|+++++.+.+. .+...++++++++.  +.|+|++++
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~t   86 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELI   86 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECC
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcC
Confidence            345789999999999999987764          24454 46788876655442 35667789999987  479999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCee-ecCCCCCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASF-LEAPVSGS  194 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~-~~~~~~~~  194 (359)
                      |........+      ...++.|..|+..... .....+++.+..+++++.+ +.+.+.+.
T Consensus        87 p~~~~h~~~~------~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g  141 (444)
T 3mtj_A           87 GGLEPARELV------MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG  141 (444)
T ss_dssp             CSSTTHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred             CCchHHHHHH------HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence            8532223332      2456788888854321 1223467777777778777 34444433

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.03  E-value=6e-06  Score=78.86  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCChh-hHHHHHHHHHC-----CCcEEEEcCCccchhHHHh--------C----CCccCCCHHHHhhcCCEE
Q 018213           70 LPGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        70 ~~~~igiiG~G~i-G~~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDiv  131 (359)
                      +.+||+|||+|.+ |.+++..|...     +.+|.+||+++++++...+        .    .+..+.+.++.+++||+|
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V  106 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV  106 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence            3469999999998 66788778776     6789999999876543221        1    133356788889999999


Q ss_pred             EEeeCC
Q 018213          132 FAMLAD  137 (359)
Q Consensus       132 i~~~p~  137 (359)
                      ++++|.
T Consensus       107 Viaag~  112 (472)
T 1u8x_X          107 MAHIRV  112 (472)
T ss_dssp             EECCCT
T ss_pred             EEcCCC
Confidence            999985

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.03  E-value=3.5e-06  Score=75.55  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C----------CccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G----------AKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g----------~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ++++++.|+|.|.+|++++..|.+.| +|++++|+.++.+.+.+. +          +.. .++.+.+.++|+||.++|.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCT
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECCCC
Confidence            67899999999999999999999999 999999998766555321 0          011 1224556789999999985


Q ss_pred             hhHHH--HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          138 PESAM--DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       138 ~~~~~--~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      .....  ....  . -...++++.+++|++.. |..+ .+.+..++.|..++
T Consensus       204 ~~~~~~~~~~~--~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~  250 (287)
T 1nvt_A          204 GMYPNIDVEPI--V-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI  250 (287)
T ss_dssp             TCTTCCSSCCS--S-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCC--C-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence            43210  0000  0 12457789999999874 3333 35555555565543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.00  E-value=8.5e-06  Score=73.99  Aligned_cols=92  Identities=10%  Similarity=-0.038  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHH----HhC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~-------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      ..+||+|||+|.||..+|..++..|+  +|.++|+++++.+..    .+.       .+....+.++ +++||+||++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            45899999999999999999998887  899999987654432    111       1223446665 899999999864


Q ss_pred             Chh---------------HHHHHhcccccccccCCCCCEEEeccC
Q 018213          137 DPE---------------SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       137 ~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+.               -.+.+.   +++.+. .+++++++.++
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~---~~I~k~-~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFII---PNIVKH-SPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHH---HHHHHH-CTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHH---HHHHhh-CCCceEEeCCC
Confidence            331               122222   333333 68888888864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.99  E-value=1.8e-05  Score=74.56  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHH---HH-hhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPD---EV-AASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~---~~-~~~aDivi~~~p~~~~~~  142 (359)
                      +++|.|+|+|++|+.+++.|.+.|++|+++|+++++++.+.+.|....    .+.+   ++ +.++|+||++++.+....
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            467999999999999999999999999999999999888887776432    1222   22 467999999998665544


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      .++    .....+.++..+|
T Consensus        84 ~i~----~~ar~~~p~~~Ii   99 (413)
T 3l9w_A           84 QLT----EMVKEHFPHLQII   99 (413)
T ss_dssp             HHH----HHHHHHCTTCEEE
T ss_pred             HHH----HHHHHhCCCCeEE
Confidence            443    2334455665555

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.98  E-value=1.5e-05  Score=72.45  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=72.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC---------CCcEE-EEcCCccchhH------HHh--CCCccCC--CHHHHhh--cCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA---------GCDVT-VWNRTKSKCDP------LIS--LGAKYQP--SPDEVAA--SCD  129 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~---------g~~V~-~~d~~~~~~~~------~~~--~g~~~~~--~~~~~~~--~aD  129 (359)
                      ++|||||+|.||+.+++.+...         +.+|. ++|+++...+.      +..  .....++  +.++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            6899999999999999999765         45554 57887654321      111  1123333  8999986  489


Q ss_pred             EEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee
Q 018213          130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL  187 (359)
Q Consensus       130 ivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~  187 (359)
                      +|+.|+|...+..+..   +-....++.|..|+..+..+. ...+++.+..++++..+.
T Consensus        83 vVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~  138 (327)
T 3do5_A           83 VLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLM  138 (327)
T ss_dssp             EEEECCCCC----CHH---HHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCcccchhHH---HHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEE
Confidence            9999998654311111   222456788998886644332 245677777777777654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.97  E-value=1.9e-05  Score=71.78  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC-----CCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-----GAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~-----g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      .+||+|||+|.+|..++..|...+.  ++.++|+++++.+...    +.     .++...+..+.+++||+|+++.+.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~   83 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP   83 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence            3799999999999999999988776  8999999876554311    11     1222234466789999999998654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.96  E-value=2.5e-05  Score=71.12  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh---C------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      .+++||+|||+|.+|..++..|...+.  ++.++|+++++.+....   .      .+....+..+.+++||+||++.+.
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~   86 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence            445899999999999999999988775  89999998765543211   1      122223456778999999999864


Q ss_pred             h
Q 018213          138 P  138 (359)
Q Consensus       138 ~  138 (359)
                      +
T Consensus        87 ~   87 (326)
T 2zqz_A           87 P   87 (326)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.95  E-value=1.6e-05  Score=61.31  Aligned_cols=103  Identities=14%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             CCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           71 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        71 ~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      .++|+|||+    +..|..+.+.|.+.|++|+.+++..+.+     .|...+.++.|+-. .|++++++| ++.+..++ 
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v-   75 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEY-   75 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGH-
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHH-
Confidence            477999998    6799999999999999999988765443     36677788888877 999999997 77888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                        ++..+. ....+++  +.|..  .+++.+.+++.|+++++
T Consensus        76 --~e~~~~-g~k~v~~--~~G~~--~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           76 --NYILSL-KPKRVIF--NPGTE--NEELEEILSENGIEPVI  110 (122)
T ss_dssp             --HHHHHH-CCSEEEE--CTTCC--CHHHHHHHHHTTCEEEE
T ss_pred             --HHHHhc-CCCEEEE--CCCCC--hHHHHHHHHHcCCeEEC
Confidence              555443 3334555  34432  35788888889999885

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.95  E-value=2.3e-05  Score=69.63  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHC-CCcEE-EEcCCccc-----hhHHH---hCCCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVT-VWNRTKSK-----CDPLI---SLGAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~-----~~~~~---~~g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ..++||+|+| +|+||+.+++.+... ++++. ++|+++..     ...+.   ..|+..++++++++.++|+||-+++ 
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-   97 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-   97 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-
Confidence            3457999999 899999999998754 67755 56776421     11121   2467788899999999999998884 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChH-HHHHHHHHH
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHI  179 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l  179 (359)
                      +..+...+   .   ..++.|.-+|..+++... ..+.+.++.
T Consensus        98 p~a~~~~~---~---~~l~~Gv~vViGTTG~~~e~~~~L~~aa  134 (288)
T 3ijp_A           98 PQASVLYA---N---YAAQKSLIHIIGTTGFSKTEEAQIADFA  134 (288)
T ss_dssp             HHHHHHHH---H---HHHHHTCEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHH---H---HHHHcCCCEEEECCCCCHHHHHHHHHHh
Confidence            55555444   2   335567767766666433 333444444

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.93  E-value=6.4e-06  Score=77.55  Aligned_cols=88  Identities=15%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCccchhHHHhC-------CCcc-------CCCHHHHhhc--CCEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-------GAKY-------QPSPDEVAAS--CDVTF  132 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~--aDivi  132 (359)
                      ++|+|+|+|.+|+.+++.|.+.|   .+|.+++|++++.+.+.+.       .+..       .+++++++++  +|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            68999999999999999999988   3899999998876665432       1211       1245567777  89999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .++|.. ....++   +   ..+..|..++|++.
T Consensus        82 n~ag~~-~~~~v~---~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPY-QDLTIM---E---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGG-GHHHHH---H---HHHHHTCCEEESSC
T ss_pred             ECCCcc-cChHHH---H---HHHHhCCCEEEecC
Confidence            998743 323333   1   22334555666533

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.92  E-value=2.7e-05  Score=70.74  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHH----HhC-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-----GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~~-----g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ..++||+|||+|.||..+|..|+..|+  ++.++|+++++.+..    .+.     .+....+..+.+++||+||++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            456899999999999999999998887  899999987655422    111     223333445678999999998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.92  E-value=3e-05  Score=70.17  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=49.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc--cchhHH----Hh------CC--CccCCCHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK--SKCDPL----IS------LG--AKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~--~~~~~~----~~------~g--~~~~~~~~~~~~~aDivi~  133 (359)
                      ++.+||+|||+|.||..+|..++..|+ +|.++|+++  ++.+..    .+      ..  +....+ .+.+++||+||+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIi   84 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVI   84 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEE
Confidence            455799999999999999999999999 999999983  332211    11      11  222334 456789999999


Q ss_pred             eeCC
Q 018213          134 MLAD  137 (359)
Q Consensus       134 ~~p~  137 (359)
                      +...
T Consensus        85 aag~   88 (315)
T 3tl2_A           85 TAGI   88 (315)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            9743

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.90  E-value=3.4e-05  Score=70.58  Aligned_cols=68  Identities=10%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCC--CcEEEEcCCccchhH----HHhC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +.++||+|||+ |.+|..+|..+...|  .+|.++|++.++.+.    +.+.     .+....+..+.+++||+||++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            55689999998 999999999999888  489999998765443    2221     23344677788999999999873

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.88  E-value=4.9e-05  Score=68.26  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhCCCccCCCHHHHhh--c-CCEEEEeeCChhHHHHHh
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--S-CDVTFAMLADPESAMDVA  145 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~--~-aDivi~~~p~~~~~~~~~  145 (359)
                      ..++.|+|+ |++|+.+++.+.+.|++ .++..+|.+. +.  -.|+..+.+++++..  . .|++++++| ++.+..++
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp-~~~~~~~v   88 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVP-APFAPDAV   88 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCC-GGGHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecC-HHHHHHHH
Confidence            356888898 99999999999988998 4444444431 11  147888899999987  5 999999998 66777776


Q ss_pred             cccccccccCCCCC-EEEeccCCC-hHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGK-GYVDVSTVD-GDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~-~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  188 (359)
                         ++..+   .|. .+|..+.+. ..+.+++.+..++.++.+++
T Consensus        89 ---~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG  127 (297)
T 2yv2_A           89 ---YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGATIIG  127 (297)
T ss_dssp             ---HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             ---HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence               44433   232 244445554 44567888888888887775

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.87  E-value=6e-05  Score=67.87  Aligned_cols=111  Identities=15%  Similarity=0.098  Sum_probs=79.7

Q ss_pred             CCCCeEEEE-cC-ChhhHHHHHHHHHCCCcEEEEcCCccchh-HHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFL-GM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igii-G~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~  143 (359)
                      ...++++|| |+ |++|..+++.+.+.|+++ +++.+|.+.. .  -.|+..+.+++|+.+  ..|++++++| ++....
T Consensus        11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~-v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP-~~~~~~   86 (305)
T 2fp4_A           11 VDKNTKVICQGFTGKQGTFHSQQALEYGTNL-VGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVP-PPFAAA   86 (305)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHH
T ss_pred             hCCCcEEEEECCCCCHHHHHHHHHHHCCCcE-EEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecC-HHHHHH
Confidence            455778999 98 999999999999999994 4444444311 1  247888889999988  8999999998 667777


Q ss_pred             HhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhc-CCeeec
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKAT-GASFLE  188 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~-~~~~~~  188 (359)
                      ++   ++..+. .- ..+++.+.+.+ .+..++.+.+++. ++.+++
T Consensus        87 ~~---~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG  128 (305)
T 2fp4_A           87 AI---NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG  128 (305)
T ss_dssp             HH---HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred             HH---HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence            76   444332 11 34455666654 4455788888888 888875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.85  E-value=7.1e-05  Score=68.86  Aligned_cols=95  Identities=12%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC----ccch--------hHHHhC--CCccCCCHHHHhhcCCEEE
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT----KSKC--------DPLISL--GAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~----~~~~--------~~~~~~--g~~~~~~~~~~~~~aDivi  132 (359)
                      .+++.||.|+|.|.+|..+|+.|...|. +|+++||+    .++.        +.+.+.  ......+++|+++++|++|
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI  268 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI  268 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence            3778999999999999999999999998 89999998    5442        223222  1122457999999999998


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      -+.. +    .++  +++....|+++.+|+++|+-.+
T Consensus       269 G~Sa-p----~l~--t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          269 GVSR-G----NIL--KPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             ECSC-S----SCS--CHHHHTTSCSSCEEEECCSSSC
T ss_pred             EeCC-C----Ccc--CHHHHHhcCCCCEEEEcCCCCC
Confidence            7763 2    344  3555566888999999988654

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.84  E-value=2.6e-05  Score=70.55  Aligned_cols=67  Identities=12%  Similarity=0.119  Sum_probs=49.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHH----hC-----CCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----SL-----GAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~~-----g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      |||+|||+|.+|..++..|...+  .++.++|+++++.+...    +.     ......+..+.+++||+|+++.+.+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~   78 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA   78 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence            58999999999999999999877  58999999876554311    11     1222223356789999999988644

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.82  E-value=9.9e-06  Score=69.06  Aligned_cols=68  Identities=10%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCChhhHHHHHH--HHHCCCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQN--LLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~--l~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      +.++|+|||+|++|+.+++.  +...|+++. ++|.++++...... .++...+++++++++.|++++|+|.
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            34789999999999999994  445678765 68988876543221 1233456788888666999999984

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.82  E-value=3.7e-05  Score=69.52  Aligned_cols=89  Identities=20%  Similarity=0.151  Sum_probs=60.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----h------CC--CccCCCHHHHhhcCCEEEEeeCChh
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S------LG--AKYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~------~g--~~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      ||+|||+|.||..++..+...|+ +|.++|+++++.+...    +      ..  +..+.+. +.+++||+||++.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            59999999999999999988787 6999999876654311    1      12  2222455 67899999999975442


Q ss_pred             ---------------HHHHHhcccccccccCCCCCEEEeccC
Q 018213          140 ---------------SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       140 ---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                                     -.+.++   +++.+. .+++.+++.++
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLA---EKIKAY-AKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEeCC
Confidence                           123333   333333 47888888755

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.77  E-value=4e-05  Score=72.82  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             CCeEEEEcCChh-hHHHHHHHHHC-----CCcEEEEcCCc--cchhHHH--------hCC----CccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTK--SKCDPLI--------SLG----AKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG~G~i-G~~ia~~l~~~-----g~~V~~~d~~~--~~~~~~~--------~~g----~~~~~~~~~~~~~aDi  130 (359)
                      .+||+|||+|.+ |.+++..|...     +.+|.+||+++  ++.+...        ..+    +..+.+.++.+++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            479999999999 88888888763     56899999988  6544311        111    2334677788999999


Q ss_pred             EEEeeCCh
Q 018213          131 TFAMLADP  138 (359)
Q Consensus       131 vi~~~p~~  138 (359)
                      |++++|.+
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99999853

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.77  E-value=6e-05  Score=68.60  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHhC-------CCccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL-------GAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~-------g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      ...+||+|||+|.||..+|..+...|.  +|.++|++.++.+.    +.+.       .+....+.+ .+++||+||++.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~a   95 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITA   95 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEcc
Confidence            456899999999999999999998887  89999998765443    2211       112234555 578999999987


Q ss_pred             CChh---HHH--------HHhcc-cccccccCCCCCEEEeccC
Q 018213          136 ADPE---SAM--------DVACG-KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       136 p~~~---~~~--------~~~~~-~~~~~~~l~~~~~vi~~s~  166 (359)
                      ..+.   +++        .++.. -+.+.+ ..|++++++.++
T Consensus        96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~-~~p~a~vlvvtN  137 (331)
T 4aj2_A           96 GARQQEGESRLNLVQRNVNIFKFIIPNVVK-YSPQCKLLIVSN  137 (331)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTCEEEECSS
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence            4321   111        11100 023333 368888888864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.77  E-value=3.2e-05  Score=68.63  Aligned_cols=93  Identities=26%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHH-CCCcEE-EEcCCccch--hHH------HhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPL------ISLGAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~------~~~g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      +++|||+|+|+ |.||+.+++.+.. .|+++. ++|++++..  ..+      ...++...+++++++.++|+||-+++ 
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-   81 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-   81 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-
Confidence            34589999998 9999999998764 577776 778765421  111      11244556678888889999996663 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +..+...+   .   ..++.|..+|..+++.
T Consensus        82 p~~~~~~~---~---~a~~~G~~vVigTtG~  106 (273)
T 1dih_A           82 PEGTLNHL---A---FCRQHGKGMVIGTTGF  106 (273)
T ss_dssp             HHHHHHHH---H---HHHHTTCEEEECCCCC
T ss_pred             hHHHHHHH---H---HHHhCCCCEEEECCCC
Confidence            55555554   2   3345566666544443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.75  E-value=0.00028  Score=61.33  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~  147 (359)
                      |||+|+|+ |.||+.+++.+... ++++. ++|+.               +++++++. .+|+||-+.+ +..+...+  
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~-p~a~~~~~--   62 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH-PDVVMGNL--   62 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC-TTTHHHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC-hHHHHHHH--
Confidence            57999996 99999999999865 89877 45553               24556554 7899997773 55555554  


Q ss_pred             cccccccCCCCCEEEeccCCChH-HHHHHHHHHHhc-CCeeecCCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKAT-GASFLEAPVS  192 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~-~~~~~~~~~~  192 (359)
                       .   ..++.|..+|-.+++... ..+.+.++.++. ++.++-.|.+
T Consensus        63 -~---~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~  105 (245)
T 1p9l_A           63 -E---FLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF  105 (245)
T ss_dssp             -H---HHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred             -H---HHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence             2   234456656655555333 334455554433 5544444433

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.74  E-value=4.1e-05  Score=69.26  Aligned_cols=89  Identities=12%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHH-C-CCcE-EEEcCCccc-hhHH-HhCCCcc-CCCHHHHhh-----cCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLK-A-GCDV-TVWNRTKSK-CDPL-ISLGAKY-QPSPDEVAA-----SCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~-~-g~~V-~~~d~~~~~-~~~~-~~~g~~~-~~~~~~~~~-----~aDivi~~~p~~~  139 (359)
                      +.+|||||+|.||+.+++.+.+ . +.++ .++|+++++ ...+ .+.|+.. .++.+++++     +.|+|++++|...
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~   83 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHH
Confidence            4789999999999999999965 3 4554 468998776 3443 3456643 456677764     4799999998333


Q ss_pred             HHHHHhcccccccccCCC--CCEEEeccC
Q 018213          140 SAMDVACGKHGAASGMGP--GKGYVDVST  166 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~--~~~vi~~s~  166 (359)
                      + ....   .   ..++.  |..+++.+.
T Consensus        84 h-~~~a---~---~al~a~~Gk~Vi~ekp  105 (312)
T 1nvm_B           84 H-VQNE---A---LLRQAKPGIRLIDLTP  105 (312)
T ss_dssp             H-HHHH---H---HHHHHCTTCEEEECST
T ss_pred             H-HHHH---H---HHHHhCCCCEEEEcCc
Confidence            3 3333   2   22344  888887643

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.74  E-value=4.5e-05  Score=69.63  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC------C--CcE-EEEcCCccchhH------HH----hCCCc-cCC---CHHHHhh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA------G--CDV-TVWNRTKSKCDP------LI----SLGAK-YQP---SPDEVAA  126 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~------g--~~V-~~~d~~~~~~~~------~~----~~g~~-~~~---~~~~~~~  126 (359)
                      +.++|||||+|.||+.+++.+...      |  ++| .++|+++++.+.      +.    ..++. .++   +.++++.
T Consensus         5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~   84 (331)
T 3c8m_A            5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA   84 (331)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred             cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence            347899999999999999998764      2  455 467887765433      11    11222 344   7888872


Q ss_pred             -cCCEEEEeeCCh---hHHHHHhcccccccccCCCCCEEEeccCCC-hHHHHHHHHHHHhcCCee
Q 018213          127 -SCDVTFAMLADP---ESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASF  186 (359)
Q Consensus       127 -~aDivi~~~p~~---~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~  186 (359)
                       +.|+|+.|+|..   ......+      ...++.|..|+...-.. ....+++.+..+++++.+
T Consensus        85 ~~iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~  143 (331)
T 3c8m_A           85 RDFDIVVDATPASADGKKELAFY------KETFENGKDVVTANKSGLANFWPEIMEYARSNNRRI  143 (331)
T ss_dssp             SSCSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEE
Confidence             579999999863   1222222      34577888888542211 134456777777777654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.72  E-value=8e-05  Score=64.31  Aligned_cols=68  Identities=18%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC-cc-----CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KY-----QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~~-----~~~~~~~~~~aDivi~~~p  136 (359)
                      +++|+|.|.|. |.+|+.+++.|.+.|++|++.+|++++.+.+...++ ..     .+++.+.+..+|+||.+..
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            77899999997 999999999999999999999999887776665454 22     1455667778888887764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.72  E-value=2.6e-05  Score=71.05  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---------CcE-EEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---------CDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---------~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ++|||||+|.||+.+++.+....         .+| .++|+++++.+.+.  ....+++.++++ +.|+|+.|+|.....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            68999999999999999998763         454 46788765433221  123456788888 999999999855333


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhc
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKAT  182 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~  182 (359)
                      ...+      ...++.|+.|+...-... ...+++.+..+++
T Consensus        81 ~~~~------~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 LRLV------LPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HHHH------HHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HHHH------HHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            3333      245677888875321111 2345555555544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.72  E-value=4.5e-05  Score=66.01  Aligned_cols=86  Identities=7%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc----CCCHH---HH-hhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPD---EV-AASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~----~~~~~---~~-~~~aDivi~~~p~~~~~~  142 (359)
                      .++|.|+|+|.+|+.+++.|...|+ |++++++++..+.+. .++..    ..+.+   ++ +.++|.|++++|.+....
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence            3679999999999999999999999 999999988776665 55432    12222   22 568999999997653333


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      .+    ......+.++..+|
T Consensus        87 ~~----~~~a~~~~~~~~ii  102 (234)
T 2aef_A           87 HC----ILGIRKIDESVRII  102 (234)
T ss_dssp             HH----HHHHHHHCSSSEEE
T ss_pred             HH----HHHHHHHCCCCeEE
Confidence            32    22334455663444

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.70  E-value=0.00011  Score=66.58  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCC--CcEEEEcCCccchh--HHHhCC----Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISLG----AKY---QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|||+ |.+|..++..|...|  .+|.++|+++.+..  .+.+..    +..   .++.+++++++|+|+++.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~   78 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence            58999998 999999999999888  68999999862111  111111    111   13677789999999999853

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.69  E-value=0.0001  Score=67.24  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCC--CcEEEEcCCccch--hHHHhCCC----cc---CCCHHHHhhcCCEEEEeeCC
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAG--CDVTVWNRTKSKC--DPLISLGA----KY---QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~--~~~~~~g~----~~---~~~~~~~~~~aDivi~~~p~  137 (359)
                      .+|||+|+| +|.+|..++..|...|  .+|.++|++++..  ..+.+...    ..   .+++.++++++|+||++.+.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            447999999 7999999999999988  7899999876511  11222111    11   22556788999999999853

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.69  E-value=4.9e-05  Score=69.04  Aligned_cols=172  Identities=13%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC-------CCcEE-EEcCCccch------hH----HHhCC-Cc--cCCCHHHHhh-
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA-------GCDVT-VWNRTKSKC------DP----LISLG-AK--YQPSPDEVAA-  126 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~-------g~~V~-~~d~~~~~~------~~----~~~~g-~~--~~~~~~~~~~-  126 (359)
                      ++..+|+|||+|.||+.+++.+...       +.+|. ++|+++...      +.    ..+.+ +.  .. +.++++. 
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~   80 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG   80 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence            3457899999999999999999763       34544 567765421      11    11223 21  12 5667765 


Q ss_pred             -cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee-cCCCCCCCccccCCce
Q 018213          127 -SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQL  203 (359)
Q Consensus       127 -~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~  203 (359)
                       +.|+|+.|+|.....+...   +.....++.|..||....... ...+++.+..++++..+. .+.+.++.|       
T Consensus        81 ~~iDvVVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giP-------  150 (325)
T 3ing_A           81 EAADLLVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVP-------  150 (325)
T ss_dssp             SCCSEEEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSC-------
T ss_pred             CCCCEEEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCH-------
Confidence             4799999998542211111   222356778888886544322 345667777777777554 344433322       


Q ss_pred             EEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC
Q 018213          204 IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--MATFSEGLLHSEKVGL  267 (359)
Q Consensus       204 ~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~--~~~~~Ea~~l~~~~Gi  267 (359)
                               ..+.+++++  .|.++..+..+-++.     .|++..-+  -..+.|++.-|++.|.
T Consensus       151 ---------ii~~l~~~l--~g~~I~~i~Gi~nGT-----~nyil~~m~~g~~f~~~l~~Aq~~Gy  200 (325)
T 3ing_A          151 ---------LFSVLDYSI--LPSKVKRFRGIVSST-----INYVIRNMANGRSLRDVVDDAIKKGI  200 (325)
T ss_dssp             ---------CHHHHHHTC--TTCCEEEEEEECCHH-----HHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred             ---------HHHHHHHHh--hCCCeeEEEEEEEee-----eeEEeecccCCCCHHHHHHHHHHcCC
Confidence                     124566655  345554444332232     22222222  1245566666677675

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.68  E-value=7.8e-05  Score=68.17  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-CC------------------CccCCCHHHHhhcCCE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LG------------------AKYQPSPDEVAASCDV  130 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g------------------~~~~~~~~~~~~~aDi  130 (359)
                      .||||+|+|.||+.+++.+... ++++. ++|++++....+.+ .|                  +....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            5899999999999999999875 35654 56777665544332 22                  2345688898889999


Q ss_pred             EEEeeCChhHH
Q 018213          131 TFAMLADPESA  141 (359)
Q Consensus       131 vi~~~p~~~~~  141 (359)
                      |++|+|...+.
T Consensus        83 V~~aTp~~~h~   93 (334)
T 2czc_A           83 IVDATPGGIGA   93 (334)
T ss_dssp             EEECCSTTHHH
T ss_pred             EEECCCccccH
Confidence            99999865433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.60  E-value=2.4e-05  Score=67.78  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      +.+|+|.|.| .|.||+.+++.|.+.| ++|++++|++++...+...++..       .++++++++.+|+||.+.+
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~   97 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT   97 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence            4457899999 5999999999999999 89999999876654322222211       1234456778898887774

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.60  E-value=0.0001  Score=65.53  Aligned_cols=65  Identities=15%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHHHhhcCCEEEEeeCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~~~~aDivi~~~p~  137 (359)
                      +|+|.|.|+|.+|+.+++.|.+.|++|++.+|++.+...+...++...    .+++  +.++|+||.+...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            489999999999999999999999999999999877666655444321    1233  6789999988753

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.57  E-value=9.7e-05  Score=67.55  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=46.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV  130 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi  130 (359)
                      +||||+|+|.||+.+++.|... ++++. +.++++........                   .++....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            5799999999999999999873 56764 45665443222211                   122222356777789999


Q ss_pred             EEEeeCChh
Q 018213          131 TFAMLADPE  139 (359)
Q Consensus       131 vi~~~p~~~  139 (359)
                      |+.|+|...
T Consensus        82 V~~atp~~~   90 (337)
T 1cf2_P           82 VIDCTPEGI   90 (337)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCchh
Confidence            999998543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.57  E-value=0.00023  Score=65.61  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh-----CCC---c-cCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-----LGA---K-YQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~-----~g~---~-~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ++++||+|+| +|.+|+.+.+.|.... +++.......+....+..     .+.   . ...+ ++.+.++|+|++|+|.
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~   92 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPH   92 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCT
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCc
Confidence            3457999999 8999999999998765 477666543322222221     111   0 1112 4455689999999985


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ... .+..   .   .. +.|..+||.|...
T Consensus        93 ~~s-~~~a---~---~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           93 GTT-QEII---K---EL-PTALKIVDLSADF  115 (359)
T ss_dssp             TTH-HHHH---H---TS-CTTCEEEECSSTT
T ss_pred             hhH-HHHH---H---HH-hCCCEEEECCccc
Confidence            543 3333   2   23 6788999998754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.56  E-value=0.00017  Score=68.76  Aligned_cols=116  Identities=18%  Similarity=0.074  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc----chhHHHhCCCccC--CCHHHHhhc-CCEEEEee--CC-h
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQ--PSPDEVAAS-CDVTFAML--AD-P  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~--~~~~~~~~~-aDivi~~~--p~-~  138 (359)
                      +++++|.|||.|..|.+.|+.|.+.|++|+++|+++.    ..+.+.+.|+...  ...++++.+ +|+||++.  |. .
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~   86 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNN   86 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTS
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCC
Confidence            5678999999999999999999999999999998652    2345666677543  234455566 89999863  32 2


Q ss_pred             hHHHHHh------cccccccccCCCCCEEEec-cCCChHHHHHHHHHHHhcCC
Q 018213          139 ESAMDVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       139 ~~~~~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  184 (359)
                      +.+....      .+..+++..+.+..+|--+ |.|+..+..-+...|+..|.
T Consensus        87 p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           87 PMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             HHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            2332221      0111233233334444444 45556666666667776654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.56  E-value=0.0003  Score=59.74  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-----CCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||.|+|. |.+|+.+++.|.+.|++|++.+|++++.+.+. .++..     .+...+.+..+|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            67999995 99999999999999999999999987655443 23321     11111667889999988854

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.54  E-value=5.2e-05  Score=70.12  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC---cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ...+|.|||. |+.|..-++.+...|.   +|.++|+++...      |..    . +.+.++|+||-|+.-......++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~----~-~~i~~aDivIn~vlig~~aP~Lv  281 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP----F-DEIPQADIFINCIYLSKPIAPFT  281 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC----C-THHHHSSEEEECCCCCSSCCCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc----h-hhHhhCCEEEECcCcCCCCCccc
Confidence            3568999999 9999999999999998   999999875221      222    1 34569999999997544444455


Q ss_pred             cccccccccC-CCCCEEEeccCC
Q 018213          146 CGKHGAASGM-GPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l-~~~~~vi~~s~~  167 (359)
                        .++.++.| +++.+|||++--
T Consensus       282 --t~e~v~~m~k~gsVIVDVA~D  302 (394)
T 2qrj_A          282 --NMEKLNNPNRRLRTVVDVSAD  302 (394)
T ss_dssp             --CHHHHCCTTCCCCEEEETTCC
T ss_pred             --CHHHHhcCcCCCeEEEEEecC
Confidence              56667789 999999999643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.48  E-value=0.00033  Score=63.80  Aligned_cols=115  Identities=13%  Similarity=0.021  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc--chhHHHhCCCccC--CCHHHHh-hcCCEEEEe--eC-ChhH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS--KCDPLISLGAKYQ--PSPDEVA-ASCDVTFAM--LA-DPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~--~~~~~~~-~~aDivi~~--~p-~~~~  140 (359)
                      .+++|.|||.|.+|.+ +|+.|.+.|++|+++|+++.  ..+.+.+.|+...  .+.+++. .++|+||..  +| ..+.
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHH
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHH
Confidence            3578999999999995 99999999999999998643  3455667777653  3455554 479999985  33 2334


Q ss_pred             HHHHhc------cccccccc-C-CCCCEEEec-cCCChHHHHHHHHHHHhcCC
Q 018213          141 AMDVAC------GKHGAASG-M-GPGKGYVDV-STVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       141 ~~~~~~------~~~~~~~~-l-~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  184 (359)
                      +.....      +..+++.. + +...+|--+ |.|+..+..-+...|+..|.
T Consensus        83 ~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           83 VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            333321      11122222 2 222344333 55566666666677777664

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.47  E-value=0.00036  Score=61.81  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      .++.++++.|||-++ +|+.+|..|...+..|+++....              .++.+.+++|||||.++..+.    ++
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p~----~i  236 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKAE----LI  236 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCSTT----CB
T ss_pred             CCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCCC----cc
Confidence            348899999999755 79999999999999999987543              267788999999999997653    33


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        .   .+++|+|+++||++..
T Consensus       237 --~---~d~vk~GavVIDVGin  253 (303)
T 4b4u_A          237 --Q---KDWIKQGAVVVDAGFH  253 (303)
T ss_dssp             --C---GGGSCTTCEEEECCCB
T ss_pred             --c---cccccCCCEEEEecee
Confidence              1   2468999999999754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.46  E-value=0.00017  Score=60.52  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|.|+|. |.+|+.+++.|.+.|++|++.+|++++.......++..       .+++.++++++|+||.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            78999997 99999999999999999999999876543221112211       1133455667888887764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.45  E-value=0.0011  Score=56.69  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCC-CccCC--CHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLG-AKYQP--SPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~~~--~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +++++|.|||.|.+|..-++.|.+.|.+|++++++.. ..+.+.+.+ +....  -.++.+.++|+||.++. .+++...
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~~N~~  107 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQAVNKF  107 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHHHHHH
Confidence            7889999999999999999999999999999997653 233344332 32211  11244678999998885 4455444


Q ss_pred             h
Q 018213          145 A  145 (359)
Q Consensus       145 ~  145 (359)
                      +
T Consensus       108 I  108 (223)
T 3dfz_A          108 V  108 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.45  E-value=0.00012  Score=64.06  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++.++|.|||+|.+|+.+++.|+..|. +|+++|++.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            556889999999999999999999997 899999986

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.44  E-value=0.00021  Score=63.85  Aligned_cols=64  Identities=13%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHh----CC--C--ccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----LG--A--KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~----~g--~--~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||+|.+|+.+|..|...+.  ++.++|.++++.+.    +.+    .+  .  ....+. +.+++||+|+++.-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecC
Confidence            789999999999999999987764  79999998754332    111    11  1  112334 56789999999873

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.44  E-value=0.00014  Score=66.94  Aligned_cols=164  Identities=15%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC----CcEE-EEcCCccchhHHHhC--CCccCCCHHHHhhcC---------------
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAASC---------------  128 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g----~~V~-~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~a---------------  128 (359)
                      +++|||||+|.||+.+++.+....    .+|. ++|++...   +.+.  |+..+++.++++.+.               
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~   80 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhh
Confidence            368999999999999999998853    4553 45654321   2222  444445566655433               


Q ss_pred             -----CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCC----ChHHHHHHHHHHHhcCCeee-cCCCCCCCccc
Q 018213          129 -----DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV----DGDTSKLINGHIKATGASFL-EAPVSGSKKPA  198 (359)
Q Consensus       129 -----Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~----~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~  198 (359)
                           |+|+.|+|......       .....++.|..|+...-.    .....++|. ..+++|+.+. .+.+.++    
T Consensus        81 ~~~~~DvVV~~t~~~~~a~-------~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~g----  148 (358)
T 1ebf_A           81 TSPKPVILVDNTSSAYIAG-------FYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAG----  148 (358)
T ss_dssp             TCSSCEEEEECSCCHHHHT-------THHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTT----
T ss_pred             hccCCcEEEEcCCChHHHH-------HHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccC----
Confidence                 78999998553322       223567788888853222    123344555 4444454432 2222211    


Q ss_pred             cCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Q 018213          199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM------ATFSEGLLHSEKVGL  267 (359)
Q Consensus       199 ~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~------~~~~Ea~~l~~~~Gi  267 (359)
                                  -..++.+++++.. |.++..+..+-++.     .|++..-+.      ..+.|++.-+++.|.
T Consensus       149 ------------iPii~~l~~~l~~-G~~I~~I~GIlnGT-----~nyil~~m~~~~~~g~~f~~~l~eAq~~Gy  205 (358)
T 1ebf_A          149 ------------LPIISFLREIIQT-GDEVEKIEGIFSGT-----LSYIFNEFSTSQANDVKFSDVVKVAKKLGY  205 (358)
T ss_dssp             ------------SSCHHHHHHHHHH-TCCEEEEEEECCHH-----HHHHHHHHSCSSCCCCCHHHHHHHHHHHTC
T ss_pred             ------------CcHHHHHHHHHHc-CCCeEEEEEEEeec-----ceeeecccccccccCCCHHHHHHHHHHcCC
Confidence                        1245667776643 33444443322222     233333332      357788888889886

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.42  E-value=8.3e-05  Score=63.50  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=47.5

Q ss_pred             CeEEEEc-CChhhHHHHHHHH-HCCCcEEEEcCCcc-chhHHHhC--CCc-----c--CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLL-KAGCDVTVWNRTKS-KCDPLISL--GAK-----Y--QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~-~~g~~V~~~d~~~~-~~~~~~~~--g~~-----~--~~~~~~~~~~aDivi~~~p  136 (359)
                      ++|.|.| .|.||+.+++.|. +.|++|++.+|+++ +.+.+...  ++.     .  .++++++++.+|+||.+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            4599999 5999999999999 89999999999987 66555311  111     1  1234456677888888775

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.40  E-value=0.00046  Score=63.15  Aligned_cols=67  Identities=12%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEE-EEcCCccchhHHH-hCCCc-----------------cCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVT-VWNRTKSKCDPLI-SLGAK-----------------YQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~-~~d~~~~~~~~~~-~~g~~-----------------~~~~~~~~~~~aDiv  131 (359)
                      .||||+|+|+||+.+++.+.... +++. ++|++++...... ..|+.                 ...+.++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            47999999999999999998653 5654 5677654332222 22332                 233455666689999


Q ss_pred             EEeeCCh
Q 018213          132 FAMLADP  138 (359)
Q Consensus       132 i~~~p~~  138 (359)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999854

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.39  E-value=0.00024  Score=64.75  Aligned_cols=67  Identities=13%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCC----ccchhH----HHhC------CCccCCCHHHHhhc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT----KSKCDP----LISL------GAKYQPSPDEVAAS  127 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~----~~~~~~----~~~~------g~~~~~~~~~~~~~  127 (359)
                      +.|||+|+|+ |.+|..++..|...|+       +|.++|++    .++.+.    +.+.      .+....+..+.+++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~   83 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD   83 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence            3479999997 9999999999998885       79999998    432321    2221      11223577888999


Q ss_pred             CCEEEEeeC
Q 018213          128 CDVTFAMLA  136 (359)
Q Consensus       128 aDivi~~~p  136 (359)
                      +|+|+++..
T Consensus        84 aD~Vi~~ag   92 (329)
T 1b8p_A           84 ADVALLVGA   92 (329)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEeCC
Confidence            999998864

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.37  E-value=0.00058  Score=61.48  Aligned_cols=66  Identities=14%  Similarity=0.134  Sum_probs=46.5

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCC--cEEEEcC--CccchhH----HHhC-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNR--TKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~--~V~~~d~--~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+|+| +|.+|..++..|...|+  ++.++|+  ++++.+.    +.+.     .+....+..+.++++|+||++.+.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            5899999 99999999999988875  6888998  6544322    1111     112211235678999999998753

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.34  E-value=0.00048  Score=63.18  Aligned_cols=89  Identities=15%  Similarity=0.099  Sum_probs=56.2

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh--------CCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ++||+|+| +|.+|+.+.+.|.... +++....+..+....+.+        ..+. +.+.++ +.++|+|++|+|... 
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~-   80 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGV-   80 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHH-
Confidence            47899999 7999999999998765 376665543222111111        1111 223334 478999999998543 


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .....   +   ..++.|..+|+.|...
T Consensus        81 s~~~a---~---~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           81 FAREF---D---RYSALAPVLVDLSADF  102 (345)
T ss_dssp             HHHTH---H---HHHTTCSEEEECSSTT
T ss_pred             HHHHH---H---HHHHCCCEEEEcCccc
Confidence            33333   2   2346788899997753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.31  E-value=9e-05  Score=70.82  Aligned_cols=68  Identities=24%  Similarity=0.374  Sum_probs=52.1

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCcc----CCCH---HHH-hhcCCEEEEeeCCh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPSP---DEV-AASCDVTFAMLADP  138 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~----~~~~---~~~-~~~aDivi~~~p~~  138 (359)
                      .|+|-|+|+|.+|..+|+.|...|++|++.|+++++.+.+.+ .++..    ..++   +++ +++||+++.+++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            489999999999999999999999999999999988877664 34432    1122   222 45799998887543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.30  E-value=0.00084  Score=57.10  Aligned_cols=66  Identities=18%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-----CCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivi~~~p~  137 (359)
                      |||.|.|. |.+|+.+++.|.+.|++|++.+|++++...+...++..     .+...+.+..+|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            57999997 99999999999999999999999987665543333322     11111667889999988743

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.30  E-value=5.9e-05  Score=64.09  Aligned_cols=68  Identities=9%  Similarity=0.129  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCChhhHHHHHH--HHHCCCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhh-cCCEEEEeeCCh
Q 018213           70 LPGRIGFLGMGIMGTPMAQN--LLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA-SCDVTFAMLADP  138 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~--l~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aDivi~~~p~~  138 (359)
                      +.++|+|||+|++|..+++.  ... |+++. ++|.++++...... .++...++++++++ +.|+|++|+|..
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            34789999999999999995  333 77654 67888876543221 12333567788876 489999999843

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.29  E-value=0.00032  Score=64.34  Aligned_cols=93  Identities=14%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCC------CcEEEEc-C-Cccc-hhH----HHh-CCCccC-CCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAG------CDVTVWN-R-TKSK-CDP----LIS-LGAKYQ-PSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g------~~V~~~d-~-~~~~-~~~----~~~-~g~~~~-~~~~~~~~~aDivi  132 (359)
                      ++++||+|+| +|.+|+.+.+.|...+      +++.... + +..+ ...    +.. ..+... .+.+ .+.++|+|+
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~-~~~~~DvVf   85 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAA-VLGGHDAVF   85 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHH-HHTTCSEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHH-HhcCCCEEE
Confidence            3457999999 8999999999999877      3666554 2 2211 211    111 111111 1333 356899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      +|+|.. ....++   +.+    +.|..+||.|...-.
T Consensus        86 ~alg~~-~s~~~~---~~~----~~G~~vIDlSa~~R~  115 (352)
T 2nqt_A           86 LALPHG-HSAVLA---QQL----SPETLIIDCGADFRL  115 (352)
T ss_dssp             ECCTTS-CCHHHH---HHS----CTTSEEEECSSTTTC
T ss_pred             ECCCCc-chHHHH---HHH----hCCCEEEEECCCccC
Confidence            999854 344444   222    568899999876543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.28  E-value=0.0005  Score=63.30  Aligned_cols=94  Identities=19%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc-------cchhHHHh----C--CCccCCCHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK-------SKCDPLIS----L--GAKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~-------~~~~~~~~----~--g~~~~~~~~~~~~~aDivi~~  134 (359)
                      +++.||.|+|.|..|..+|+.+...|. +|+++|++.       +.+..+.+    .  ......+++|+++.+|++|=+
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~  265 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGV  265 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEEC
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEec
Confidence            677899999999999999999999998 999999873       12222211    1  111245789999999998766


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCCCh
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      ..     ..++  .+++...|+++.+|+.+|+-.+
T Consensus       266 Sa-----pgl~--T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          266 SA-----PGVL--KAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             CS-----TTCC--CHHHHHTSCSSCEEEECCSSSC
T ss_pred             CC-----CCCC--CHHHHHhhCCCCEEEECCCCCc
Confidence            42     2444  4566678999999999998765

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.28  E-value=0.0012  Score=59.51  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHC-C--CcEEEEcCCccchh----HHHhCCC--ccC----CCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKA-G--CDVTVWNRTKSKCD----PLISLGA--KYQ----PSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~-g--~~V~~~d~~~~~~~----~~~~~g~--~~~----~~~~~~~~~aDivi~~~p~  137 (359)
                      |||+||| +|.+|..++..|... +  .++.++|+++ +.+    .+.+...  ...    ++..+.+++||+|+++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            6899999 899999999999764 4  5899999976 222    1222211  111    2456778999999998854


Q ss_pred             h
Q 018213          138 P  138 (359)
Q Consensus       138 ~  138 (359)
                      +
T Consensus        80 ~   80 (312)
T 3hhp_A           80 A   80 (312)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.26  E-value=0.00035  Score=65.76  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC---cEEEEc----CC--ccchhH---HH-------hC-CCc-cCCCHHHHhhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWN----RT--KSKCDP---LI-------SL-GAK-YQPSPDEVAAS  127 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d----~~--~~~~~~---~~-------~~-g~~-~~~~~~~~~~~  127 (359)
                      +++++|.|+|+|..|++++..|...|.   +|+++|    |+  ..+.+.   +.       .. +.. ...++.+.+++
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~  263 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKD  263 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhcc
Confidence            677899999999999999999999998   899999    86  222111   21       11 111 23568888999


Q ss_pred             CCEEEEeeCC--hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          128 CDVTFAMLAD--PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       128 aDivi~~~p~--~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                      +|++|-++|.  ...++..+       ..|.++.+++++++-.  .+ .+.+..++.|...+
T Consensus       264 aDVlInaT~~~~G~~~~e~v-------~~m~~~~iVfDLynP~--~t-~~~~~A~~~G~~iv  315 (439)
T 2dvm_A          264 ADVLISFTRPGPGVIKPQWI-------EKMNEDAIVFPLANPV--PE-ILPEEAKKAGARIV  315 (439)
T ss_dssp             CSEEEECSCCCSSSSCHHHH-------TTSCTTCEEEECCSSS--CS-SCHHHHHHHTCSEE
T ss_pred             CCEEEEcCCCccCCCChHHH-------HhcCCCCEEEECCCCC--Cc-chHHHHHHcCCeEE
Confidence            9999999986  22222233       4577888999994432  22 23333444466655

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.25  E-value=0.00098  Score=62.52  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=70.0

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHHhC-C-------CccCCCHHHHhh-c
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-G-------AKYQPSPDEVAA-S  127 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~~~~~-~  127 (359)
                      ++++++|+|.|+|++|+..++.|.+.|.+|+ +.|++          .+.+..+.+. |       .+.. +.++++. +
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~  310 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLP  310 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCC
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCC
Confidence            4788999999999999999999999999987 55652          2233333322 1       1222 4556553 7


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |||++-|.+.+     .+  +.+-...+ +-.+|+..++++. + .+..+.|.++|+.++.
T Consensus       311 ~DIlvPcA~~n-----~i--~~~na~~l-~ak~VvEgAN~p~-t-~eA~~iL~~~GI~~~P  361 (440)
T 3aog_A          311 VEFLVPAALEK-----QI--TEQNAWRI-RARIVAEGANGPT-T-PAADDILLEKGVLVVP  361 (440)
T ss_dssp             CSEEEECSSSS-----CB--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHHTCEEEC
T ss_pred             CcEEEecCCcC-----cc--chhhHHHc-CCcEEEecCcccc-C-HHHHHHHHHCCCEEEC
Confidence            99999987532     22  23333344 3456666655543 3 3455677788877653

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.19  E-value=0.00055  Score=63.06  Aligned_cols=89  Identities=18%  Similarity=0.219  Sum_probs=55.2

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCc-cchhHHHh-C-------------CCccC-CCHHHHhh-cCCEEE
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTK-SKCDPLIS-L-------------GAKYQ-PSPDEVAA-SCDVTF  132 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~-~~~~~~~~-~-------------g~~~~-~~~~~~~~-~aDivi  132 (359)
                      +||+|+| +|.+|+.+++.|...+ ++|....+++ ...+.+.+ .             .+... .+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            6899999 8999999999998764 5776654221 11111110 0             11111 14455556 899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +|+|. .......   +.+   ++.|..+|+.+..
T Consensus        89 ~atp~-~~~~~~a---~~~---~~aG~~VId~s~~  116 (354)
T 1ys4_A           89 SALPS-DLAKKFE---PEF---AKEGKLIFSNASA  116 (354)
T ss_dssp             ECCCH-HHHHHHH---HHH---HHTTCEEEECCST
T ss_pred             ECCCc-hHHHHHH---HHH---HHCCCEEEECCch
Confidence            99984 3444444   322   3467889998764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.18  E-value=0.00018  Score=64.10  Aligned_cols=66  Identities=17%  Similarity=0.036  Sum_probs=49.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p~  137 (359)
                      |+|.|.|. |.+|+.+++.|.+. |++|.+.+|++++...+...++..       .+++.++++++|+||.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            57999995 99999999999987 999999999987655443333322       12345677889999887753

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.18  E-value=9.5e-05  Score=62.59  Aligned_cols=68  Identities=6%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHH--HHCCCcEE-EEcCCcc-chhH-HHhCCCcc--CCCHHHHhh--cCCEEEEeeCCh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKS-KCDP-LISLGAKY--QPSPDEVAA--SCDVTFAMLADP  138 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l--~~~g~~V~-~~d~~~~-~~~~-~~~~g~~~--~~~~~~~~~--~aDivi~~~p~~  138 (359)
                      +..+++|+|+|++|+++++.+  ...|+++. ++|.+++ +... .. .|+.+  .++++++++  +.|++++|+|..
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            446899999999999999984  45577755 6788887 5433 11 24433  456677776  489999999843

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.18  E-value=0.00032  Score=62.35  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-------cCCCHHHHhhc-CCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAAS-CDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~-aDivi~~~p  136 (359)
                      ++|+|.|.|+|.+|+.+++.|.+.|++|++.+|+++...    .++.       -..+++++++. +|+||.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            357899999999999999999999999999999876532    1221       11233455666 999988763

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=97.17  E-value=0.00069  Score=64.56  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCC----hhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMG----IMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G----~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+.++|+|||.+    ++|..+.+.|.+.| ..|+.+++.....     .|...+.++.|+....|++++++| ++.+..
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp-~~~~~~   79 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD   79 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecC-HHHHHH
Confidence            445889999998    88999999999885 6777777653322     377888889998888999999998 677777


Q ss_pred             HhcccccccccCCCCCEEEeccCCCh--H-----HHHHHHHHHHhcCCeeec
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDG--D-----TSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~--~-----~~~~l~~~l~~~~~~~~~  188 (359)
                      ++   ++..+. .-. .++..+.+-+  .     ..+++.+.+++.|+++++
T Consensus        80 ~v---~e~~~~-Gi~-~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG  126 (457)
T 2csu_A           80 TL---IQCGEK-GVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (457)
T ss_dssp             HH---HHHHHH-TCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             HH---HHHHHc-CCC-EEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence            77   554432 222 3444444432  2     266777888888888885

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.16  E-value=0.0012  Score=60.36  Aligned_cols=67  Identities=10%  Similarity=0.101  Sum_probs=45.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEEE-EcCCccchhH---------------------HHhCCCccCCCHHHHhhcC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDP---------------------LISLGAKYQPSPDEVAASC  128 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~---------------------~~~~g~~~~~~~~~~~~~a  128 (359)
                      +||||+|+|.||+.+++.|... +++|.+ .|++++....                     +.+.++....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            5899999999999999999876 477654 4443332211                     2222333333455666789


Q ss_pred             CEEEEeeCCh
Q 018213          129 DVTFAMLADP  138 (359)
Q Consensus       129 Divi~~~p~~  138 (359)
                      |+|+.|+|..
T Consensus        83 DiV~eatg~~   92 (343)
T 2yyy_A           83 DIVVDGAPKK   92 (343)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEECCCcc
Confidence            9999999754

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.16  E-value=0.0005  Score=62.63  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHC-CCcEEEEcCCc---cchhHHHh-----CC---CccCC--CHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTK---SKCDPLIS-----LG---AKYQP--SPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~-g~~V~~~d~~~---~~~~~~~~-----~g---~~~~~--~~~~~~~~aDivi~~~  135 (359)
                      ++||+|+| +|.+|+.+.+.|... .+++.....+.   ..-+.+.+     .+   .....  +.++++.++|+|++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~   83 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLAT   83 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECC
Confidence            37899999 599999999999884 45776553322   21121211     11   22221  3455548999999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      |. ....+..   +.+   ++.|..+||.|...
T Consensus        84 p~-~~s~~~~---~~~---~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           84 AH-EVSHDLA---PQF---LEAGCVVFDLSGAF  109 (337)
T ss_dssp             CH-HHHHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             Ch-HHHHHHH---HHH---HHCCCEEEEcCCcc
Confidence            83 4445554   332   45789999998764

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.11  E-value=0.0013  Score=61.28  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcC----------CccchhHHHhC-C-Cc--cCCCHHHHh-hcCCEE
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-AK--YQPSPDEVA-ASCDVT  131 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-~~--~~~~~~~~~-~~aDiv  131 (359)
                      ++++++|.|.|+|++|+..|+.|.+.|.+|+ +.|+          +.+.+..+.+. + +.  .. +.++++ -+|||+
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DVl  293 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEVL  293 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSEE
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceEE
Confidence            4788999999999999999999999999987 6666          33334333332 2 11  11 223333 379999


Q ss_pred             EEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +-|.....-+..-       .+.+ +=.+|+.-++.+. + .+..+.|.++|+.++.
T Consensus       294 iP~A~~n~i~~~~-------A~~l-~ak~V~EgAN~p~-t-~~A~~~L~~~Gi~~~P  340 (419)
T 3aoe_E          294 VLAAREGALDGDR-------ARQV-QAQAVVEVANFGL-N-PEAEAYLLGKGALVVP  340 (419)
T ss_dssp             EECSCTTCBCHHH-------HTTC-CCSEEEECSTTCB-C-HHHHHHHHHHTCEEEC
T ss_pred             Eecccccccccch-------HhhC-CceEEEECCCCcC-C-HHHHHHHHHCCCEEEC
Confidence            9887433222222       2233 2346776666554 3 3455778888887764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.04  E-value=0.001  Score=60.97  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-CCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ..+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|.... .+.+++.+..|+|+-++..+......+  
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~--  252 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL--  252 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH--
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH--
Confidence            45689999999999999999999999999999999988887777775432 233333336788888886443444443  


Q ss_pred             cccccccCCCCCEEEeccCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~  168 (359)
                           ..++++..++.++...
T Consensus       253 -----~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          253 -----KLLTYNGDLALVGLPP  268 (348)
T ss_dssp             -----TTEEEEEEEEECCCCC
T ss_pred             -----HHHhcCCEEEEECCCC
Confidence                 4566677777665433

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.00042  Score=59.17  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=47.7

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~~p  136 (359)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|++++...+. .++.       -.+++.++++++|+||.+..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            47899999 599999999999999999999999876543221 1111       11234566778898887764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.03  E-value=0.0007  Score=60.39  Aligned_cols=43  Identities=21%  Similarity=0.208  Sum_probs=37.4

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++.|+| .|.+|++++..|.+.|++|++++|++++.+.+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~  160 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA  160 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence            6678999999 899999999999999999999999876655443

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.01  E-value=0.0029  Score=57.76  Aligned_cols=91  Identities=20%  Similarity=0.280  Sum_probs=58.0

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh------CCCccC-CCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS------LGAKYQ-PSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~------~g~~~~-~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      .+.||||||. |..|+.+.+.|.... .++.........-+.+.+      ...... .+.+++..++|++++|+|. ..
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~-~~   90 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPA-GA   90 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCST-TH
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCc-HH
Confidence            3468999985 999999999999875 355554322211112221      122221 2455665789999999984 44


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCCh
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      .+++.   +.+     .|..|||.|...-
T Consensus        91 s~~~~---~~~-----~g~~VIDlSsdfR  111 (351)
T 1vkn_A           91 SYDLV---REL-----KGVKIIDLGADFR  111 (351)
T ss_dssp             HHHHH---TTC-----CSCEEEESSSTTT
T ss_pred             HHHHH---HHh-----CCCEEEECChhhh
Confidence            55554   333     7899999987643

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.00  E-value=0.00026  Score=64.64  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCC---CcEEEEc-C-CccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAG---CDVTVWN-R-TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g---~~V~~~d-~-~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++||+|+| +|.+|+.+.+.|...+   +++.... + +..+.-.+....+...+...+.+.++|+|+.|+|.. .....
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~-~s~~~   81 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGE-LSAKW   81 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHH-HHHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCch-HHHHH
Confidence            47899999 9999999999998873   4565544 2 221100011111111110112346899999999743 44444


Q ss_pred             hcccccccccCCCCCEEEeccCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .   +.   .++.|..+|+.|..
T Consensus        82 a---~~---~~~~G~~vId~s~~   98 (336)
T 2r00_A           82 A---PI---AAEAGVVVIDNTSH   98 (336)
T ss_dssp             H---HH---HHHTTCEEEECSST
T ss_pred             H---HH---HHHcCCEEEEcCCc
Confidence            3   22   34568889988765

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.00  E-value=0.00058  Score=62.37  Aligned_cols=86  Identities=6%  Similarity=0.063  Sum_probs=59.8

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHH---HH-hhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPD---EV-AASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~---~~-~~~aDivi~~~p~~~~~~  142 (359)
                      .++|.|+|+|.+|+.+++.|.+.|+ |++.|+++++.+ +.+.+....    .+.+   ++ ++++|.++++++.+....
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            3579999999999999999999999 999999998887 766655321    1222   22 467899999997554333


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      .+.    .....+.++..++
T Consensus       193 ~~~----~~ar~~~~~~~ii  208 (336)
T 1lnq_A          193 HCI----LGIRKIDESVRII  208 (336)
T ss_dssp             HHH----HHHHTTCTTSEEE
T ss_pred             HHH----HHHHHHCCCCeEE
Confidence            332    2334455654444

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.99  E-value=0.0024  Score=59.59  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHH-CCCcEE-EEcC----------CccchhHHHhC-C-------CccCCCHHHHhh-
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVAA-  126 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~-~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~~-  126 (359)
                      ++++++|.|.|+|++|+..++.|.+ .|.+|+ +.|+          +++.+..+.+. +       .+.. +.++++. 
T Consensus       206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~  284 (415)
T 2tmg_A          206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL  284 (415)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcC
Confidence            4788999999999999999999999 999887 5555          33333333332 1       1222 4456553 


Q ss_pred             cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +|||++-|.+.+.-+..-.       ..+ +-.+|+..++++. + .+..+.+.++|+.++.
T Consensus       285 ~~DIliP~A~~n~i~~~~a-------~~l-~ak~V~EgAN~p~-t-~~a~~~l~~~Gi~~~P  336 (415)
T 2tmg_A          285 DVDILVPAALEGAIHAGNA-------ERI-KAKAVVEGANGPT-T-PEADEILSRRGILVVP  336 (415)
T ss_dssp             SCSEEEECSSTTSBCHHHH-------TTC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEEC
T ss_pred             CCcEEEecCCcCccCcccH-------HHc-CCeEEEeCCCccc-C-HHHHHHHHHCCCEEEC
Confidence            7999999885433322222       233 3456665555543 3 3455677788877654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.96  E-value=0.0059  Score=56.49  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHhh-----cCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|+..+       .+..+.+.     ..|+|+-++
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~  270 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  270 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECC
Confidence            346799999999999999999999998 79999999888877777665321       12333222     367777777


Q ss_pred             CChhHHHHHhcccccccccCCCC-CEEEecc
Q 018213          136 ADPESAMDVACGKHGAASGMGPG-KGYVDVS  165 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  165 (359)
                      ..+..+...+       ..++++ ..++.++
T Consensus       271 g~~~~~~~~~-------~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          271 GNVGVMRNAL-------ESCLKGWGVSVLVG  294 (374)
T ss_dssp             CCHHHHHHHH-------HTBCTTTCEEEECS
T ss_pred             CCHHHHHHHH-------HHhhcCCcEEEEEc
Confidence            5433333333       445565 5565554

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.96  E-value=0.0048  Score=57.10  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|+.
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  238 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT  238 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence            346799999999999999999999998 799999998887777666653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.96  E-value=0.00039  Score=59.14  Aligned_cols=65  Identities=11%  Similarity=0.122  Sum_probs=44.8

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC---CCccC---CCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---GAKYQ---PSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g~~~~---~~~~~~~~~aDivi~~~p  136 (359)
                      |+|.|.| .|.+|+.+++.|.+.|++|++.+|++++.+.....   .....   .++.++++++|+||.+..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence            5799998 69999999999999999999999987654322000   01111   123345566777777664

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.96  E-value=0.0045  Score=57.25  Aligned_cols=89  Identities=20%  Similarity=0.143  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~~p  136 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|+..+       .+..+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            46799999999999999999999998 79999999888877777675421       12222222     3688887775


Q ss_pred             ChhHHHHHhcccccccccCCCC-CEEEecc
Q 018213          137 DPESAMDVACGKHGAASGMGPG-KGYVDVS  165 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  165 (359)
                      .+......+       ..++++ ..++.++
T Consensus       271 ~~~~~~~~~-------~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          271 RIETMMNAL-------QSTYCGSGVTVVLG  293 (373)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECC
T ss_pred             CHHHHHHHH-------HHHhcCCCEEEEEc
Confidence            433333333       445665 5666554

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=96.96  E-value=0.00035  Score=66.84  Aligned_cols=64  Identities=13%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             CeEEEEcCChhhHH--HHHHHHH------CCCcEEEEcCCccchhHHH--------hCC----CccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTP--MAQNLLK------AGCDVTVWNRTKSKCDPLI--------SLG----AKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~--ia~~l~~------~g~~V~~~d~~~~~~~~~~--------~~g----~~~~~~~~~~~~~aDiv  131 (359)
                      |||+|||.|.+|..  +...+..      .+.+|.++|.++++.+...        ..+    +..+.+.++++++||+|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            68999999998855  2222332      1347999999987654321        112    33467889999999999


Q ss_pred             EEee
Q 018213          132 FAML  135 (359)
Q Consensus       132 i~~~  135 (359)
                      |++.
T Consensus        81 i~~~   84 (477)
T 3u95_A           81 INTA   84 (477)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            9986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.96  E-value=0.0015  Score=59.95  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-----CCHHHHhh------cCCEEEEeeCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivi~~~p~  137 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+...     .+..+.+.      ..|+|+.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            66899999999999999999999999 99999999877766666564321     12222221      36777777754


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +..+...+       +.++++..++.++.
T Consensus       247 ~~~~~~~~-------~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKALEQGL-------QAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHHHHHH-------HHEEEEEEEEECCC
T ss_pred             HHHHHHHH-------HHHhcCCEEEEEcc
Confidence            33333333       34455556665543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0039  Score=57.81  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHhh-----cCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+|+-++
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            356789999999999999999999998 89999999988877776665421       12222222     367777777


Q ss_pred             CChhHHHHHhcccccccccCCCC-CEEEecc
Q 018213          136 ADPESAMDVACGKHGAASGMGPG-KGYVDVS  165 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  165 (359)
                      ..+......+       ..++++ ..++.++
T Consensus       272 g~~~~~~~~~-------~~l~~g~G~iv~~G  295 (378)
T 3uko_A          272 GNVSVMRAAL-------ECCHKGWGTSVIVG  295 (378)
T ss_dssp             CCHHHHHHHH-------HTBCTTTCEEEECS
T ss_pred             CCHHHHHHHH-------HHhhccCCEEEEEc
Confidence            5433333333       345554 5555554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.95  E-value=0.0052  Score=56.86  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~~p  136 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            46799999999999999999999998 79999999888777776665321       12222222     3677777764


Q ss_pred             ChhHHHHHhcccccccccCCCC-CEEEecc
Q 018213          137 DPESAMDVACGKHGAASGMGPG-KGYVDVS  165 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  165 (359)
                      .+......+       ..++++ ..++.++
T Consensus       275 ~~~~~~~~~-------~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          275 TAQTLKAAV-------DCTVLGWGSCTVVG  297 (376)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECC
T ss_pred             CHHHHHHHH-------HHhhcCCCEEEEEC
Confidence            333333332       345555 5555443

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.94  E-value=0.0011  Score=61.01  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEc-CCccchhHHHh--------------CCCccCC-CHHHHhhcCCEEE
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWN-RTKSKCDPLIS--------------LGAKYQP-SPDEVAASCDVTF  132 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d-~~~~~~~~~~~--------------~g~~~~~-~~~~~~~~aDivi  132 (359)
                      ++||+|+| +|.+|+.+.+.|.... +++.... .+....+.+.+              ..+...+ +.++ +.++|+|+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf   82 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVL   82 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEE
Confidence            47899999 8999999999998754 4666553 22111111210              1122211 3344 47899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +|+|.. ......   ..   .++.|..+|+.+..
T Consensus        83 ~atp~~-~s~~~a---~~---~~~aG~~VId~s~~  110 (350)
T 2ep5_A           83 SALPNE-LAESIE---LE---LVKNGKIVVSNASP  110 (350)
T ss_dssp             ECCCHH-HHHHHH---HH---HHHTTCEEEECSST
T ss_pred             ECCChH-HHHHHH---HH---HHHCCCEEEECCcc
Confidence            999843 344444   22   34567789988754

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.93  E-value=0.0015  Score=61.09  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCCc---------------cchhHHHhC-C-------CccCCCHHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK---------------SKCDPLISL-G-------AKYQPSPDE  123 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~~---------------~~~~~~~~~-g-------~~~~~~~~~  123 (359)
                      ++++++|.|.|+|++|+..++.|.+.|.+|+ +.|+++               +.+..+.+. |       .+.. +.++
T Consensus       209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~  287 (421)
T 2yfq_A          209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEE  287 (421)
T ss_dssp             CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---------------
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccc
Confidence            4678999999999999999999999999988 566662               222222221 1       1212 2233


Q ss_pred             Hh-hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          124 VA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       124 ~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++ .+|||++-|.+.+.-+.+-.       ..+ +..+|+..++++. + .+..+.+.++|+.+++
T Consensus       288 ~~~~~~DIliP~A~~n~i~~~~A-------~~l-~ak~VvEgAN~P~-t-~ea~~il~~~GI~~~P  343 (421)
T 2yfq_A          288 FWTKEYDIIVPAALENVITGERA-------KTI-NAKLVCEAANGPT-T-PEGDKVLTERGINLTP  343 (421)
T ss_dssp             -------CEEECSCSSCSCHHHH-------TTC-CCSEEECCSSSCS-C-HHHHHHHHHHTCEEEC
T ss_pred             hhcCCccEEEEcCCcCcCCcccH-------HHc-CCeEEEeCCcccc-C-HHHHHHHHHCCCEEEC
Confidence            33 37999998875433222222       233 4566776666554 3 3455677788877653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.93  E-value=0.0011  Score=57.84  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++..+|.|||+|.+|+.+++.|+..|. +++++|++.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            566899999999999999999999997 788998764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.91  E-value=0.0008  Score=62.24  Aligned_cols=67  Identities=22%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-hCCCccC---CCHH---HHhhcCCEEEEeeC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ---PSPD---EVAASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~~---~~~~~aDivi~~~p  136 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|....   .+.+   ++....|+|+.++.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g  260 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVS  260 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCC
Confidence            578999999999999999999999999999999888776655 4454321   1111   12234577776664

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.87  E-value=0.0023  Score=56.04  Aligned_cols=88  Identities=11%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEE--eeCChhHH
Q 018213           67 ADELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA--MLADPESA  141 (359)
Q Consensus        67 ~~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~--~~p~~~~~  141 (359)
                      .++++|++-|-|.+   .||.++|+.|++.|++|.+.+|+.+..+++.+.       +++ ....++..+  -+...+++
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~Dv~~~~~v   73 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKL-------LEQ-LNQPEAHLYQIDVQSDEEV   73 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-------HGG-GTCSSCEEEECCTTCHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh-cCCCcEEEEEccCCCHHHH
Confidence            34888999999974   699999999999999999999987665544321       111 112223333  23456677


Q ss_pred             HHHhcccccccccCCCCCEEEecc
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +.++   +++.+...+=.++||..
T Consensus        74 ~~~~---~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           74 INGF---EQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             HHHH---HHHHHHHCCCSEEEECC
T ss_pred             HHHH---HHHHHHhCCCCEEEecc
Confidence            7776   55555544445666653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.86  E-value=0.002  Score=58.85  Aligned_cols=47  Identities=21%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa  209 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA  209 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC
Confidence            35689999999999999999999999999999999887776666564

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.84  E-value=0.0013  Score=60.75  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=49.5

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHh-CCCcc-----C---CCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAKY-----Q---PSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~-~g~~~-----~---~~~~~~~~~aDivi~~~  135 (359)
                      +.+|+|.|.| .|.+|+.+++.|.+. |++|++.+|+++....+.. .++..     .   .+++++++++|+||.+.
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A   99 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV   99 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence            6778999999 599999999999987 9999999998776554433 12211     1   23445677899999765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.84  E-value=0.006  Score=56.39  Aligned_cols=90  Identities=19%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHhh-----cCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+|+-++
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~  268 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  268 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECC
Confidence            346789999999999999999999998 79999999888777666665321       12222222     367777777


Q ss_pred             CChhHHHHHhcccccccccCCCC-CEEEecc
Q 018213          136 ADPESAMDVACGKHGAASGMGPG-KGYVDVS  165 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  165 (359)
                      ..+......+       ..++++ ..++.++
T Consensus       269 g~~~~~~~~~-------~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          269 GNVKVMRAAL-------EACHKGWGVSVVVG  292 (373)
T ss_dssp             CCHHHHHHHH-------HTBCTTTCEEEECS
T ss_pred             CcHHHHHHHH-------HhhccCCcEEEEEe
Confidence            5433333333       445555 5555554

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.83  E-value=0.002  Score=60.10  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcC----------CccchhHHHhC-CC------------ccCCCHHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-GA------------KYQPSPDE  123 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g~------------~~~~~~~~  123 (359)
                      ++++++|.|.|+|++|+..++.|.+.|.+|+ +.|.          +.+.+..+.+. +.            ....+.++
T Consensus       207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~  286 (421)
T 1v9l_A          207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  286 (421)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchh
Confidence            4788999999999999999999999999887 5555          22222222211 11            11213345


Q ss_pred             Hhh-cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       124 ~~~-~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++. +|||++-|.- .    ..+  +.+-.+.++ =.+|+.-++.+. + .+..+.|.++|+.++.
T Consensus       287 ~~~~~~Dil~P~A~-~----~~I--~~~~a~~l~-ak~V~EgAN~p~-t-~~a~~~l~~~Gi~~~P  342 (421)
T 1v9l_A          287 IFKLDVDIFVPAAI-E----NVI--RGDNAGLVK-ARLVVEGANGPT-T-PEAERILYERGVVVVP  342 (421)
T ss_dssp             GGGCCCSEEEECSC-S----SCB--CTTTTTTCC-CSEEECCSSSCB-C-HHHHHHHHTTTCEEEC
T ss_pred             hhcCCccEEEecCc-C----Ccc--chhhHHHcC-ceEEEecCCCcC-C-HHHHHHHHHCCCEEeC
Confidence            443 7999988773 2    233  233334442 245665555543 3 3455778888887764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.82  E-value=0.0026  Score=56.81  Aligned_cols=66  Identities=23%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch------h---HHHhCCCccC-------CCHHHHhhcCCEEEE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC------D---PLISLGAKYQ-------PSPDEVAASCDVTFA  133 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~------~---~~~~~g~~~~-------~~~~~~~~~aDivi~  133 (359)
                      +|+|.|+|. |.+|+.+++.|.+.|++|++.+|++...      +   .+...++...       +++.++++++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999996 9999999999999999999999975321      1   1222344321       234566778999998


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +.+
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            875

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.82  E-value=0.0011  Score=62.60  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CC---cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~---~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +||.|||+|.||+.++..+++. ++   +|++.|+.....            ++.+.. ...++...+ +...+..++  
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~------------~~~~~~-g~~~~~~~V-dadnv~~~l--   77 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV------------DVAQQY-GVSFKLQQI-TPQNYLEVI--   77 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC------------CHHHHH-TCEEEECCC-CTTTHHHHT--
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh------------hHHhhc-CCceeEEec-cchhHHHHH--
Confidence            6799999999999999999875 45   688888765432            222222 223444444 344454554  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  191 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  191 (359)
                       ++++   +++.++||++  .+.....+.+++.+.|++|++...
T Consensus        78 -~aLl---~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           78 -GSTL---EENDFLIDVS--IGISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -GGGC---CTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -HHHh---cCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence             3333   3457888865  333445677788888999998654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.81  E-value=0.00098  Score=57.44  Aligned_cols=68  Identities=22%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~~p  136 (359)
                      +.+|+|.|.| .|.||+.+++.|.+.|+  +|++.+|++++.+.....++.       -.++++++++..|+||.+..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            4568999998 59999999999999999  999999987654322111111       11233445556677766653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.79  E-value=0.0055  Score=56.18  Aligned_cols=91  Identities=14%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC------CC-HHHH---h-----hcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------PS-PDEV---A-----ASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------~~-~~~~---~-----~~aDivi~  133 (359)
                      ..+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|+..+      .+ .+++   .     ...|+|+-
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid  246 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  246 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEE
Confidence            35689999999999999999999999999999998887777766665321      11 1122   1     24788888


Q ss_pred             eeCChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          134 MLADPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       134 ~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ++..+..+...+       ..++++..++.++.
T Consensus       247 ~~g~~~~~~~~~-------~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          247 CSGNEKCITIGI-------NITRTGGTLMLVGM  272 (352)
T ss_dssp             CSCCHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             CCCCHHHHHHHH-------HHHhcCCEEEEEec
Confidence            775433333333       45566666666643

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.79  E-value=0.003  Score=57.57  Aligned_cols=30  Identities=20%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEEEEc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  101 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d  101 (359)
                      .||||+|+|+||+.+++.+... +.+|...+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            6899999999999999998764 57766543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.0051  Score=56.28  Aligned_cols=91  Identities=12%  Similarity=0.040  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc------CCCHHHHhh-----cCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------QPSPDEVAA-----SCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------~~~~~~~~~-----~aDivi~~~p  136 (359)
                      ..+++|.|+|. |.+|..+++.++..|.+|++.++++++.+.+.+.|...      ..+..+.+.     ..|+|+.++.
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            35688999999 99999999999999999999999887776665555421      122333332     3577777765


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+..+...+       ..++++..++.++.
T Consensus       248 ~~~~~~~~~-------~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          248 SEAAIEAST-------RYVRANGTTVLVGM  270 (347)
T ss_dssp             CHHHHHHHT-------TSEEEEEEEEECCC
T ss_pred             cHHHHHHHH-------HHHhcCCEEEEEeC
Confidence            333333332       34455555665543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.74  E-value=0.0021  Score=58.43  Aligned_cols=67  Identities=19%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      .+|+|.|.|. |.+|+.+++.|.+.|++|++.+|++...+.+.+.++..       .+++.++++.+|+||.+..
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            3479999995 99999999999999999999999877655443323321       1134566778999988764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.72  E-value=0.002  Score=58.79  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc----chh---HHHhCCCcc-------CCCHHHHhh--cCCEE
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS----KCD---PLISLGAKY-------QPSPDEVAA--SCDVT  131 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~----~~~---~~~~~g~~~-------~~~~~~~~~--~aDiv  131 (359)
                      +.+|+|.|.|. |.+|+.+++.|.+.|++|++.+|++.    +.+   .+...++..       .+++.++++  ++|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            44678999997 99999999999999999999999762    222   122234332       123556777  89999


Q ss_pred             EEeeCC
Q 018213          132 FAMLAD  137 (359)
Q Consensus       132 i~~~p~  137 (359)
                      |.+.+.
T Consensus        88 i~~a~~   93 (346)
T 3i6i_A           88 VSTVGG   93 (346)
T ss_dssp             EECCCG
T ss_pred             EECCch
Confidence            988853

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.72  E-value=0.0017  Score=60.01  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=59.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc---cchhHHHhCCCccCC--CHHHHh----hcCCEEEEeeCChhHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK---SKCDPLISLGAKYQP--SPDEVA----ASCDVTFAMLADPESA  141 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~---~~~~~~~~~g~~~~~--~~~~~~----~~aDivi~~~p~~~~~  141 (359)
                      +.+|.|+|.|.+|...++.++..|.+|++.++++   ++.+.+.+.|+...+  +..+.+    ...|+|+.++..+..+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            7899999999999999999999999999999987   666655555654331  111111    2468888877543344


Q ss_pred             -HHHhcccccccccCCCCCEEEeccC
Q 018213          142 -MDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       142 -~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                       ...+       ..++++..++.++.
T Consensus       261 ~~~~~-------~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          261 LGNVI-------PLLGRNGVLGLFGF  279 (366)
T ss_dssp             HHHHG-------GGEEEEEEEEECSC
T ss_pred             HHHHH-------HHHhcCCEEEEEec
Confidence             4443       33455556665543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.71  E-value=0.0017  Score=60.14  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCH---HHHhhcCCEEEEeeCChhHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSP---DEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~---~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+   .+.   +++....|+|+-++..+..+..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~  273 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  273 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHH
Confidence            4679999999999999999999999999999999888777766665321   111   1122356888888754333333


Q ss_pred             HhcccccccccCCCCCEEEeccC
Q 018213          144 VACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+       ..++++..++.++.
T Consensus       274 ~~-------~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          274 FT-------TLLKRDGTMTLVGA  289 (369)
T ss_dssp             HH-------TTEEEEEEEEECCC
T ss_pred             HH-------HHhccCCEEEEecc
Confidence            33       34556666666644

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.71  E-value=0.0058  Score=56.11  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-C-C---HHHH---h-----hcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-P-S---PDEV---A-----ASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~~---~-----~~aDivi~~  134 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+ + +   .++.   +     ...|+|+-+
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~  249 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  249 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEEC
Confidence            356899999999999999999999998 89999998887777766665321 1 1   1111   1     247888888


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +..+..+...+       ..++++..++.++.
T Consensus       250 ~g~~~~~~~~~-------~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          250 TGAEASIQAGI-------YATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             CCChHHHHHHH-------HHhcCCCEEEEEec
Confidence            75433333333       45666666666643

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.71  E-value=0.0039  Score=56.92  Aligned_cols=67  Identities=7%  Similarity=0.094  Sum_probs=48.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccch--h----HHHhC------CCccCCCHHHHhhcC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSKC--D----PLISL------GAKYQPSPDEVAASC  128 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~~--~----~~~~~------g~~~~~~~~~~~~~a  128 (359)
                      ++..||+|+|+ |.||..++..|+....       ++.++|..+...  +    ++...      .+...++..+.+++|
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a  101 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV  101 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence            45569999996 9999999999987543       789999865321  1    12221      123456788889999


Q ss_pred             CEEEEee
Q 018213          129 DVTFAML  135 (359)
Q Consensus       129 Divi~~~  135 (359)
                      |+||++.
T Consensus       102 dvVvi~a  108 (345)
T 4h7p_A          102 AIAIMCG  108 (345)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9999976

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.70  E-value=0.0034  Score=58.53  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=70.6

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHHhC-C------CccCCCHHHHh-hcC
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-G------AKYQPSPDEVA-ASC  128 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~-g------~~~~~~~~~~~-~~a  128 (359)
                      +++++||.|-|+|++|+..|+.|.+.|.+|+ +.|.+          .+.+..+++. |      .+.. +.++++ .+|
T Consensus       218 ~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~  296 (424)
T 3k92_A          218 KLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDC  296 (424)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCC
T ss_pred             CcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccc
Confidence            4788999999999999999999999999874 66665          2222222222 2      1222 445554 379


Q ss_pred             CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ||++-|...     +.+  +.+-.+.+ +-.+|+..++++. + .+..+.|.++|+.+++
T Consensus       297 DIliPcA~~-----n~I--~~~~a~~l-~ak~V~EgAN~p~-t-~eA~~iL~~rGI~~~P  346 (424)
T 3k92_A          297 DILVPAAIS-----NQI--TAKNAHNI-QASIVVERANGPT-T-IDATKILNERGVLLVP  346 (424)
T ss_dssp             SEEEECSCS-----SCB--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEEC
T ss_pred             cEEeecCcc-----ccc--ChhhHhhc-CceEEEcCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence            999887743     333  33334445 3456666666553 3 3456788888887764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.70  E-value=0.0043  Score=54.88  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=54.8

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~  144 (359)
                      +++++++.|.|. |.||+++++.|++.|++|++.+|+.+..+.+.+.       +.+.  ..++.++.  +.+..+++.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dl~d~~~v~~~   99 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE-------IAGV--GGKALPIRCDVTQPDQVRGM   99 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHHT--TCCCEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhc--CCeEEEEEcCCCCHHHHHHH
Confidence            477889989985 8999999999999999999999987766554321       1111  12233322  3344556666


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||.+
T Consensus       100 ~---~~~~~~~g~iD~lvnnA  117 (276)
T 3r1i_A          100 L---DQMTGELGGIDIAVCNA  117 (276)
T ss_dssp             H---HHHHHHHSCCSEEEECC
T ss_pred             H---HHHHHHcCCCCEEEECC
Confidence            6   44444443445666654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.69  E-value=0.0036  Score=54.66  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      .++++++.|.|. |.||+++++.|.+.|++|++.+|+.++.+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   48 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQA   48 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367788989985 8999999999999999999999987655443

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.67  E-value=0.0028  Score=57.72  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCC--c-----EEEEcCCcc--chh----HHHhCC------CccCCCHHHHhhcCCE
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGC--D-----VTVWNRTKS--KCD----PLISLG------AKYQPSPDEVAASCDV  130 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~--~-----V~~~d~~~~--~~~----~~~~~g------~~~~~~~~~~~~~aDi  130 (359)
                      .+||.|+| +|.+|..++..|...|.  +     +.++|+++.  +.+    .+.+..      +....+..+.+++||+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv   82 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence            37899999 79999999999998775  5     999999642  221    122211      2234567788899999


Q ss_pred             EEEee
Q 018213          131 TFAML  135 (359)
Q Consensus       131 vi~~~  135 (359)
                      |+++.
T Consensus        83 VvitA   87 (333)
T 5mdh_A           83 AILVG   87 (333)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99876

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.66  E-value=0.0019  Score=57.69  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCc-------cchhH---HHhCCCcc-------CCCHHHHhhcCCEEE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-------SKCDP---LISLGAKY-------QPSPDEVAASCDVTF  132 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~-------~~~~~---~~~~g~~~-------~~~~~~~~~~aDivi  132 (359)
                      +|+|.|.|. |.+|+.+++.|.+.|++|++.+|++       ++.+.   +...++..       .+++.++++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            478999996 9999999999999999999999986       32222   22334432       123456778899999


Q ss_pred             EeeCC
Q 018213          133 AMLAD  137 (359)
Q Consensus       133 ~~~p~  137 (359)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            88753

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.64  E-value=0.0013  Score=60.13  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCC---cEEEE-cCC-ccchhHHHhCCCccCC-CHHHHhhcCCEEEEeeCChhHHHH
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGC---DVTVW-NRT-KSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~---~V~~~-d~~-~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ++||+|+| +|.+|+.+.+.|.+.++   ++... +++ ..+.-.+....+...+ +.++ +.++|+|++|+|. .....
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~~~DvV~~a~g~-~~s~~   83 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FSSVGLAFFAAAA-EVSRA   83 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GGGCSEEEECSCH-HHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hcCCCEEEEcCCc-HHHHH
Confidence            37899999 89999999999986654   44544 432 2111001000111111 1222 5689999999974 33444


Q ss_pred             HhcccccccccCCCCCEEEeccCCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      ..   +.   .++.|..+|+.|...
T Consensus        84 ~a---~~---~~~aG~kvId~Sa~~  102 (340)
T 2hjs_A           84 HA---ER---ARAAGCSVIDLSGAL  102 (340)
T ss_dssp             HH---HH---HHHTTCEEEETTCTT
T ss_pred             HH---HH---HHHCCCEEEEeCCCC
Confidence            43   22   234577788876543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.63  E-value=0.0044  Score=56.59  Aligned_cols=32  Identities=22%  Similarity=0.445  Sum_probs=25.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-CCcEEEEc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  101 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d  101 (359)
                      .++||||+|+|.+|+.+.+.|... .++|...+
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            346999999999999999999876 57776554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.62  E-value=0.0031  Score=56.72  Aligned_cols=65  Identities=32%  Similarity=0.412  Sum_probs=48.5

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc-chhH---HHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS-KCDP---LISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~---~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      ++|.|+|. |.+|+.+++.|.+.|++|++.+|++. +.+.   +...++..       .+++.++++++|+||.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            48999995 99999999999999999999999875 3222   22334432       1234567788999998875

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.61  E-value=0.0029  Score=55.25  Aligned_cols=85  Identities=6%  Similarity=-0.006  Sum_probs=57.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      +++|++-|-|. +.||+++|+.|++.|.+|.+++|++++.+...++       +++.  ..+++.+.  +.+..+++.++
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~--g~~~~~~~~Dvt~~~~v~~~~   75 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGM--GKEVLGVKADVSKKKDVEEFV   75 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHH
Confidence            77788877776 7799999999999999999999988766554321       1111  22343333  34566777777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         ++..+...+=.++||.+
T Consensus        76 ---~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           76 ---RRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHcCCCCEEEECC
Confidence               55555555556777764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.61  E-value=0.0023  Score=56.05  Aligned_cols=44  Identities=18%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ..++++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+..
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV   69 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3377788888875 9999999999999999999999987665443

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.60  E-value=0.005  Score=58.35  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch--hHHHhCCCccC--CCHHHHhhcCCEEEEeeC---ChhHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGAKYQ--PSPDEVAASCDVTFAMLA---DPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~--~~~~~~g~~~~--~~~~~~~~~aDivi~~~p---~~~~~  141 (359)
                      .++++|.|||.|..|.+.|+.|.+.|++|+++|......  ..+. .|+...  ....+.+..+|.|++...   ..+.+
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSL   81 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHH
Confidence            456889999999999999999999999999999764332  2344 566542  212455668999988642   22333


Q ss_pred             HHHh------ccccccc-ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe
Q 018213          142 MDVA------CGKHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       142 ~~~~------~~~~~~~-~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      ....      .+..+++ ..++...+-|.-|+|+..+..-+...|+..|..
T Consensus        82 ~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~  132 (439)
T 2x5o_A           82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN  132 (439)
T ss_dssp             HHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence            3211      0111111 123322333444556666666677777776543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.58  E-value=0.0017  Score=59.79  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC------CHHHHh-hcCCEEEEeeCC--hh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVA-ASCDVTFAMLAD--PE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~-~~aDivi~~~p~--~~  139 (359)
                      ..+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+-      +..+.+ ...|+|+.+++.  +.
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~  257 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI  257 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHH
Confidence            356899999999999999999999999999999998887777766654221      222222 357999998864  22


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .    +   +..++.++++..++.++.
T Consensus       258 ~----~---~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          258 D----F---NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             C----T---TTGGGGEEEEEEEEECCC
T ss_pred             H----H---HHHHHHhcCCCEEEEecC
Confidence            2    2   334456677777776654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.58  E-value=0.0034  Score=55.88  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-------CCccCCCHHHHhh--cCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAA--SCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~--~aDivi~~~p~~  138 (359)
                      ++..+|.|||+|.+|+.++..|+..|. +++++|.+.-....+...       |...+....+.+.  +.++-+...+..
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~  113 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN  113 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence            666899999999999999999999996 788999865322222211       1111111222222  356655555321


Q ss_pred             ----hHHHHHhcccccc----cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          139 ----ESAMDVACGKHGA----ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       139 ----~~~~~~~~~~~~~----~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                          .....++   +.+    +...+.-.+|||++- ....-..+.+.+...++.++.+.+.+
T Consensus       114 l~~~~~~~~~~---~~~~~~~l~~~~~~DlVid~~D-n~~~R~~in~~c~~~~~Pli~~gv~~  172 (292)
T 3h8v_A          114 ITTVENFQHFM---DRISNGGLEEGKPVDLVLSCVD-NFEARMTINTACNELGQTWMESGVSE  172 (292)
T ss_dssp             TTSHHHHHHHH---HHHHHBSSSTTBCCSEEEECCS-SHHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred             CCcHHHHHHHh---hhhcccccccCCCCCEEEECCc-chhhhhHHHHHHHHhCCCEEEeeeec
Confidence                1222222   100    001134467887754 33344566677777788887765543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.58  E-value=0.01  Score=55.53  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-----CCHHHHhh------cCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivi~~~p  136 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+     .+..+.+.      ..|+|+-++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            456799999999999999999999999 89999998888776666665321     12222211      3677777775


Q ss_pred             Ch
Q 018213          137 DP  138 (359)
Q Consensus       137 ~~  138 (359)
                      .+
T Consensus       292 ~~  293 (404)
T 3ip1_A          292 VP  293 (404)
T ss_dssp             CH
T ss_pred             Cc
Confidence            44

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.57  E-value=0.0018  Score=59.47  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCC-CcEEEE-cCCc--cchhHHH-----------hCCCccC-CCHHHHhhcCCEEE
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVW-NRTK--SKCDPLI-----------SLGAKYQ-PSPDEVAASCDVTF  132 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~-d~~~--~~~~~~~-----------~~g~~~~-~~~~~~~~~aDivi  132 (359)
                      +++|||||| +|.+|+.+.+.|.... .++... +++.  ++....-           ....... .+.+ .+.++|+||
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf   84 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIF   84 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEE
Confidence            347899999 6999999999998765 355433 3332  1222110           0011111 1333 347899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +|+|.. ..+...   +.+   ++.|..+||.|...
T Consensus        85 ~a~p~~-~s~~~a---~~~---~~~G~~vIDlSa~~  113 (359)
T 4dpk_A           85 SPLPQG-AAGPVE---EQF---AKEGFPVISNSPDH  113 (359)
T ss_dssp             ECCCTT-THHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             ECCChH-HHHHHH---HHH---HHCCCEEEEcCCCc
Confidence            999854 334443   222   45788999997653

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.57  E-value=0.0018  Score=59.47  Aligned_cols=91  Identities=14%  Similarity=0.182  Sum_probs=54.9

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCC-CcEEEE-cCCc--cchhHHH-----------hCCCccC-CCHHHHhhcCCEEE
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVW-NRTK--SKCDPLI-----------SLGAKYQ-PSPDEVAASCDVTF  132 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~-d~~~--~~~~~~~-----------~~g~~~~-~~~~~~~~~aDivi  132 (359)
                      +++|||||| +|.+|+.+.+.|.... .++... +++.  ++....-           ....... .+.+ .+.++|+||
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf   84 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIF   84 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEE
Confidence            347899999 6999999999998765 355433 3332  1222110           0011111 1333 347899999


Q ss_pred             EeeCChhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +|+|.. ..+...   +.+   ++.|..+||.|...
T Consensus        85 ~a~p~~-~s~~~a---~~~---~~~G~~vIDlSa~~  113 (359)
T 4dpl_A           85 SPLPQG-AAGPVE---EQF---AKEGFPVISNSPDH  113 (359)
T ss_dssp             ECCCTT-THHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             ECCChH-HHHHHH---HHH---HHCCCEEEEcCCCc
Confidence            999854 334443   222   45788999998653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.57  E-value=0.0023  Score=56.15  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             cccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           66 EADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        66 ~~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      |.+++++++.|.|. |.||.++|+.|++.|++|++.+|++++.+..
T Consensus         5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDAC   50 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            33477788888875 8999999999999999999999987665443

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.56  E-value=0.0035  Score=55.86  Aligned_cols=66  Identities=26%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccch--hHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKC--DPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~--~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      +|+|.|.|. |.+|+.+++.|.+.| ++|.+.+|++++.  +.+...++..       .+++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            478999997 999999999999988 9999999987653  2233334432       1234566788999998874

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.56  E-value=0.0087  Score=58.03  Aligned_cols=115  Identities=12%  Similarity=-0.020  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc--chhHHHhCCCccC--CCHHHHhhcCCEEEEe--eC-ChhHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS--KCDPLISLGAKYQ--PSPDEVAASCDVTFAM--LA-DPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~--~~~~~~~~~aDivi~~--~p-~~~~~  141 (359)
                      +.++|.|||.|..|.+ +|+.|.+.|++|+++|....  ..+.+.+.|+.+.  .+.+++..++|+||..  +| ..+.+
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHH
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHH
Confidence            4588999999999996 79999999999999998642  3355667777653  3445555678999985  33 23344


Q ss_pred             HHHh------ccccccccc-C-CCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213          142 MDVA------CGKHGAASG-M-GPGKGY-VDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       142 ~~~~------~~~~~~~~~-l-~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ....      .+..+++.. + ++..+| |.-|.|+..++.-+...|+..|.
T Consensus        98 ~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~  149 (524)
T 3hn7_A           98 EYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI  149 (524)
T ss_dssp             HHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            3322      111233322 2 222334 43355666666666677776654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.56  E-value=0.0032  Score=52.50  Aligned_cols=43  Identities=14%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~  112 (359)
                      .+++|.|+| .|.+|..+++.++..|.+|++.++++++.+.+.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            457899999 6999999999999999999999998766554443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.55  E-value=0.004  Score=54.58  Aligned_cols=85  Identities=12%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|+.++.+...+.       +.+  ...++.++.+  .+..+++.++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~~   79 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ-------VTD--TGRRALSVGTDITDDAQVAHLV   79 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCHHHHHHHH
Confidence            67788888886 7899999999999999999999987665543321       111  1233444433  3455666666


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        80 ---~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           80 ---DETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ---HHHHHHTSCCSEEEECC
T ss_pred             ---HHHHHHcCCCcEEEECC
Confidence               55544444445677765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.55  E-value=0.0055  Score=58.04  Aligned_cols=108  Identities=12%  Similarity=0.178  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcCC----------hhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--CCCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G----------~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +++++|+|+|+-          .-...+++.|.+.|.+|.+||+...  +...+  .++..+.+++++++++|.|+++++
T Consensus       320 ~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~  397 (446)
T 4a7p_A          320 VRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKMLTDVEFVENPYAAADGADALVIVTE  397 (446)
T ss_dssp             CTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred             CCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence            678999999987          5689999999999999999998653  22222  256777889999999999999996


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .+ +.+.+=+  +.+...|+ +.+|+|+-+....      +.+++.|..|..
T Consensus       398 ~~-~f~~~d~--~~~~~~~~-~~~i~D~r~~~~~------~~~~~~g~~y~~  439 (446)
T 4a7p_A          398 WD-AFRALDL--TRIKNSLK-SPVLVDLRNIYPP------AELERAGLQYTG  439 (446)
T ss_dssp             CT-TTTSCCH--HHHHTTBS-SCBEECSSCCSCH------HHHHHTTCBCCC
T ss_pred             CH-HhhcCCH--HHHHHhcC-CCEEEECCCCCCH------HHHHhcCCEEEE
Confidence            44 3222110  22333443 4678887444321      233456666654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.54  E-value=0.0025  Score=55.03  Aligned_cols=67  Identities=12%  Similarity=0.024  Sum_probs=48.1

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      +.+|+|.|.| .|.+|+.+++.|.+.  |++|++.+|++++.+.+ ..++..       .+++++++++.|+||.+..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            3468899998 599999999999999  89999999987554332 112211       1234566778898888764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.54  E-value=0.0072  Score=52.54  Aligned_cols=88  Identities=17%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~--p~~~~~~~~  144 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|++++.+...+       .+.+.-. .+.++..-+  ......+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~~~   82 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVAS-------HINEETGRQPQWFILDLLTCTSENCQQL   82 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------HHHhhcCCCceEEEEecccCCHHHHHHH
Confidence            66788888886 889999999999999999999998766554332       1111111 222232222  334556666


Q ss_pred             hcccccccccCCCCCEEEeccC
Q 018213          145 ACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +   +++.....+=.++||.+.
T Consensus        83 ~---~~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           83 A---QRIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             H---HHHHHHCSCCSEEEECCC
T ss_pred             H---HHHHHhCCCCCEEEECCc
Confidence            6   444444444456666643

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.53  E-value=0.0012  Score=60.85  Aligned_cols=88  Identities=14%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCc---EEEEc-CCc-cchhHHHhCCCccC-CCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCD---VTVWN-RTK-SKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~---V~~~d-~~~-~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +||+||| .|.+|+.+.+.|...++.   +.... ++. .+.-.+........ .+. +.+.++|+|+.|+| ....+..
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~-~~~~~~Dvvf~a~~-~~~s~~~   80 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE-TAFEGVDIALFSAG-SSTSAKY   80 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCT-TTTTTCSEEEECSC-HHHHHHH
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCH-HHhcCCCEEEECCC-hHhHHHH
Confidence            6899999 699999999999987663   33332 221 11100110011111 122 23578999999997 4444444


Q ss_pred             hcccccccccCCCCCEEEeccCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .   +.+   ++.|..+||.|..
T Consensus        81 a---~~~---~~~G~~vIDlSa~   97 (366)
T 3pwk_A           81 A---PYA---VKAGVVVVDNTSY   97 (366)
T ss_dssp             H---HHH---HHTTCEEEECSST
T ss_pred             H---HHH---HHCCCEEEEcCCc
Confidence            4   322   4578899999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.53  E-value=0.0048  Score=56.26  Aligned_cols=47  Identities=21%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa  211 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA  211 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC
Confidence            35688999999999999999999999999999999888777766664

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.51  E-value=0.0058  Score=56.49  Aligned_cols=48  Identities=25%  Similarity=0.292  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+..++.|+.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  229 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT  229 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC
Confidence            356899999999999999999999998 899999988777666655653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.51  E-value=0.0015  Score=56.59  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ++|.|.|. |.||+.+++.|.+.|++|++.+|++++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~   38 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI   38 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc
Confidence            56889986 9999999999999999999999987653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.51  E-value=0.0039  Score=56.44  Aligned_cols=67  Identities=21%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------CCCcc--------CCCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------LGAKY--------QPSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~g~~~--------~~~~~~~~~~aDivi  132 (359)
                      +++|+|.|.|. |.||+.+++.|.+.|++|++.+|++++.+.+.+       .++..        ..+++++++..|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            56789999987 999999999999999999999998655433221       11111        123445556778887


Q ss_pred             Eee
Q 018213          133 AML  135 (359)
Q Consensus       133 ~~~  135 (359)
                      .+.
T Consensus        89 h~A   91 (342)
T 1y1p_A           89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            765

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.50  E-value=0.0034  Score=56.52  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCc-c-----chhH---HHhCCCcc-------CCCHHHHhhcCCEEEE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-S-----KCDP---LISLGAKY-------QPSPDEVAASCDVTFA  133 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~-~-----~~~~---~~~~g~~~-------~~~~~~~~~~aDivi~  133 (359)
                      +|+|.|+|. |.+|+.+++.|.+.|++|++.+|++ .     +.+.   +...++..       .+++.++++++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            478999995 9999999999999999999999986 2     2221   22334432       1235567788999998


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.50  E-value=0.0033  Score=56.34  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=45.7

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----CCCccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|.|.| .|.+|+.+++.|.+.|++|++.+|++...+ +..     ..+. ..++.++++++|+||.+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            7899999 599999999999999999999999854433 221     1122 3345667788999988764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.50  E-value=0.0026  Score=55.73  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcC-C-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLGM-G-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~  144 (359)
                      ++++++.|.|. | .||.++++.|.+.|++|++.+|+.++.+...+.       +.+. ...++.++.+  .+..+++.+
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dl~~~~~v~~~   91 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ-------LADL-GLGRVEAVVCDVTSTEAVDAL   91 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTT-CSSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHhc-CCCceEEEEeCCCCHHHHHHH
Confidence            77889999998 8 599999999999999999999987655443321       1000 1123444433  344556666


Q ss_pred             hcccccccccCCCCCEEEeccC
Q 018213          145 ACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +   +++.+...+=.++||.+.
T Consensus        92 ~---~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           92 I---TQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHhCCCcEEEECCC
Confidence            5   444444434456666643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.50  E-value=0.0043  Score=54.00  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+...
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV   48 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            66788888885 78999999999999999999999887765543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.50  E-value=0.0039  Score=54.12  Aligned_cols=42  Identities=19%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|+.+..+.+
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAV   49 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            66788888886 8999999999999999999999987665544

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.48  E-value=0.0031  Score=57.63  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=40.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      .+.+|.|+|.|.+|...++.++..  |.+|++.++++++.+.+.+.|..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~  218 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD  218 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence            578999999999999999999988  99999999988777666655543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.47  E-value=0.0039  Score=57.47  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+.+.|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa  234 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA  234 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence            35689999999999999999999999999999998877666655554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.47  E-value=0.0022  Score=56.75  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|.|.|. |.+|+.+++.|.+.  |++|++.+|++++.+.+...++..       .+++.++++++|+|+.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            46889986 99999999999998  999999999887666554444322       1234466778899887764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.47  E-value=0.0034  Score=56.24  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCC------HHHHhhcCCEEEEeeCChhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~------~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ..+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+.+.|....-+      ..+.+...|+++. +.. ..+
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~  201 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEV  201 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHH
Confidence            35688999998 99999999999999999999999888877776666542211      1122245677777 643 333


Q ss_pred             HHHhcccccccccCCCCCEEEecc
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ...       +..++++..++.++
T Consensus       202 ~~~-------~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          202 EES-------LGLLAHGGRLVYIG  218 (302)
T ss_dssp             HHH-------HTTEEEEEEEEEC-
T ss_pred             HHH-------HHhhccCCEEEEEe
Confidence            333       34455555666553

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.47  E-value=0.0087  Score=52.12  Aligned_cols=85  Identities=14%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|+++..+...+.          +-.+..++..-+.+..+++.++  
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~--   72 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE----------LGAAVRFRNADVTNEADATAAL--   72 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------------CEEEECCTTCHHHHHHHH--
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----------hCCceEEEEccCCCHHHHHHHH--
Confidence            66788888876 8999999999999999999999987655433221          1112222222333455666666  


Q ss_pred             cccccccCCCCCEEEeccC
Q 018213          148 KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~  166 (359)
                       +++.+...+=.++||.+.
T Consensus        73 -~~~~~~~g~id~lv~nAg   90 (257)
T 3tpc_A           73 -AFAKQEFGHVHGLVNCAG   90 (257)
T ss_dssp             -HHHHHHHSCCCEEEECCC
T ss_pred             -HHHHHHcCCCCEEEECCC
Confidence             444444434456666643

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.46  E-value=0.0028  Score=57.47  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      ++..+|.|||+|.+|+.+++.|+..|. +++++|++.
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            667899999999999999999999996 788998864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.46  E-value=0.0044  Score=53.61  Aligned_cols=86  Identities=14%  Similarity=-0.001  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|+++..+.+.+.       +.+.  ..++.++.+  .+..+++.++
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~D~~~~~~~~~~~   73 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS-------MKEK--GFKARGLVLNISDIESIQNFF   73 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhc--CCceEEEEecCCCHHHHHHHH
Confidence            56688888875 8999999999999999999999987655443321       1111  223433333  3445666666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.+...+=.++||.+.
T Consensus        74 ---~~~~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           74 ---AEIKAENLAIDILVNNAG   91 (247)
T ss_dssp             ---HHHHHTTCCCSEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCC
Confidence               444444444456776643

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.45  E-value=0.0056  Score=58.94  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC--CHHHHhhcCCEEEEe--eCC-hhHHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP--SPDEVAASCDVTFAM--LAD-PESAM  142 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~--~~~~~~~~aDivi~~--~p~-~~~~~  142 (359)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|.... ..+.+.+.|+.+..  +. +.+.++|+||+.  +|. .+.+.
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~~d~vV~Spgi~~~~p~~~   99 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRP-ENVLDASVVVVSTAISADNPEIV   99 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTSCTTCHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHH
Confidence            3478999999999995 99999999999999997643 23456666776532  33 345689999986  332 23333


Q ss_pred             HHh------ccccccccc-CCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213          143 DVA------CGKHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       143 ~~~------~~~~~~~~~-l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ...      .+..+++.. ++...+| |.-|.|+..+..-+...|+..|.
T Consensus       100 ~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  149 (494)
T 4hv4_A          100 AAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL  149 (494)
T ss_dssp             HHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence            221      011123322 2322233 43355666667667777777663

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.45  E-value=0.0053  Score=53.30  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++.|.|. |.||+++|+.|++.|++|++.+|+++..+...+.          +-.....+..-+.+..+++.++  
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~--   74 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY----------LGDNGKGMALNVTNPESIEAVL--   74 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceEEEEeCCCHHHHHHHH--
Confidence            66788888875 8899999999999999999999987655443321          1111122222233455666666  


Q ss_pred             cccccccCCCCCEEEeccC
Q 018213          148 KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~  166 (359)
                       +++.+...+=.++||.+.
T Consensus        75 -~~~~~~~g~iD~lv~nAg   92 (248)
T 3op4_A           75 -KAITDEFGGVDILVNNAG   92 (248)
T ss_dssp             -HHHHHHHCCCSEEEECCC
T ss_pred             -HHHHHHcCCCCEEEECCC
Confidence             444444434456666643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.44  E-value=0.0058  Score=53.97  Aligned_cols=41  Identities=22%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT   61 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            66788888875 899999999999999999999998765443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.44  E-value=0.0034  Score=55.38  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      ++ +++.|.|. |.||.++++.|.+.|++|++.+|++++.+.+.+.          +-...++.++.  +.+..+++.++
T Consensus        20 ~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~d~~~v~~~~   88 (272)
T 2nwq_A           20 MS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE----------LSAKTRVLPLTLDVRDRAAMSAAV   88 (272)
T ss_dssp             -C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             cC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hhcCCcEEEEEcCCCCHHHHHHHH
Confidence            44 66777775 8999999999999999999999987654443221          10112333333  33455666666


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||..
T Consensus        89 ---~~~~~~~g~iD~lvnnA  105 (272)
T 2nwq_A           89 ---DNLPEEFATLRGLINNA  105 (272)
T ss_dssp             ---HTCCGGGSSCCEEEECC
T ss_pred             ---HHHHHHhCCCCEEEECC
Confidence               55544444445667664

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.44  E-value=0.013  Score=49.66  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      -..|+.+|+|+ |+||+.+++.....|+++. .+|+...                ++ +.++|++|=.. .|..+...+ 
T Consensus        10 ~~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------------~~-l~~~DVvIDFT-~P~a~~~~~-   70 (228)
T 1vm6_A           10 HHHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------------EE-LDSPDVVIDFS-SPEALPKTV-   70 (228)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------------EE-CSCCSEEEECS-CGGGHHHHH-
T ss_pred             hccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------------cc-ccCCCEEEECC-CHHHHHHHH-
Confidence            34589999998 9999999988777888865 4565431                11 13689988444 355555554 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                        +   ..++.|.-+|..++|......+..+.+.++ +.++-+|.+
T Consensus        71 --~---~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNf  110 (228)
T 1vm6_A           71 --D---LCKKYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNF  110 (228)
T ss_dssp             --H---HHHHHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCC
T ss_pred             --H---HHHHcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEeccc
Confidence              2   223456666665666544443344444333 455555544

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=96.44  E-value=0.0075  Score=56.57  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             CCeEEEEcCChh-hHHHHHHHHH----C-CCcEEEEcCCccchhHHH---h----C--CCccCCCHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLGMGIM-GTPMAQNLLK----A-GCDVTVWNRTKSKCDPLI---S----L--GAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~G~i-G~~ia~~l~~----~-g~~V~~~d~~~~~~~~~~---~----~--g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+||+|||+|.. +..+...|..    . +.+|.++|.++++.+...   .    .  .+..+.+..+.+++||+|+++.
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita   81 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF   81 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence            478999999985 2222223343    2 568999999987644311   1    1  1223457778899999999998


Q ss_pred             C
Q 018213          136 A  136 (359)
Q Consensus       136 p  136 (359)
                      -
T Consensus        82 g   82 (417)
T 1up7_A           82 R   82 (417)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.44  E-value=0.0046  Score=55.40  Aligned_cols=45  Identities=9%  Similarity=0.027  Sum_probs=37.6

Q ss_pred             cccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           66 EADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        66 ~~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      |.++.++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+..
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA   71 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            33467788999986 8899999999999999999999987665543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.43  E-value=0.0028  Score=55.43  Aligned_cols=86  Identities=12%  Similarity=-0.023  Sum_probs=55.8

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~  144 (359)
                      +++++++-|-|. +.||+++|+.|++.|.+|.+.+|++++.++..+.       +.+  ...++..+.+  .+..+++.+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~~   76 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEAA   76 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHH
Confidence            377777766665 7899999999999999999999987665543321       111  0123333322  355677777


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||.+
T Consensus        77 ~---~~~~~~~G~iDiLVNNA   94 (255)
T 4g81_D           77 F---SKLDAEGIHVDILINNA   94 (255)
T ss_dssp             H---HHHHHTTCCCCEEEECC
T ss_pred             H---HHHHHHCCCCcEEEECC
Confidence            7   55555555556777764

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.43  E-value=0.0034  Score=58.08  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCC-CcEE-EE-cC-Cccc-hhHH-------------HhCCCccCCCHHHHhhcCC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVT-VW-NR-TKSK-CDPL-------------ISLGAKYQPSPDEVAASCD  129 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g-~~V~-~~-d~-~~~~-~~~~-------------~~~g~~~~~~~~~~~~~aD  129 (359)
                      ++++|||||| +|..|..+.+.|.... .++. ++ ++ +..+ ....             .+.-+... +.++.+.++|
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~-~~~~~~~~~D   95 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC-KPEGNFLECD   95 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES-SSCTTGGGCS
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC-chhhhcccCC
Confidence            5567899999 5999999999998765 3564 33 33 2211 1111             11111111 1221457899


Q ss_pred             EEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          130 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       130 ivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +||+|+| ....+...   +.+   .+.|..+||.|...
T Consensus        96 vvf~alp-~~~s~~~~---~~~---~~~G~~VIDlSa~f  127 (381)
T 3hsk_A           96 VVFSGLD-ADVAGDIE---KSF---VEAGLAVVSNAKNY  127 (381)
T ss_dssp             EEEECCC-HHHHHHHH---HHH---HHTTCEEEECCSTT
T ss_pred             EEEECCC-hhHHHHHH---HHH---HhCCCEEEEcCCcc
Confidence            9999997 44445554   333   45788999997653

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.42  E-value=0.0036  Score=57.72  Aligned_cols=88  Identities=10%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             CeEEEEc-CChhhHHHHH-HHHHCCC---cEEEEcC-Cccc-hhHHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLG-MGIMGTPMAQ-NLLKAGC---DVTVWNR-TKSK-CDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~-~l~~~g~---~V~~~d~-~~~~-~~~~~~~g~~~--~~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +||+|+| +|.+|+.+.+ .|...++   ++..... +..+ ...+....+..  ..+.++ +.++|+|+.|+| .....
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g-~~~s~   79 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQG-GDYTN   79 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSC-HHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCC-chhHH
Confidence            6899999 8999999999 5665554   3443332 2211 11111112222  223444 578999999997 44444


Q ss_pred             HHhcccccccccCCCCC--EEEeccCC
Q 018213          143 DVACGKHGAASGMGPGK--GYVDVSTV  167 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~--~vi~~s~~  167 (359)
                      ...   +.+   .+.|.  ++||.+..
T Consensus        80 ~~a---~~~---~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           80 EIY---PKL---RESGWQGYWIDAASS  100 (367)
T ss_dssp             HHH---HHH---HHTTCCCEEEECSST
T ss_pred             HHH---HHH---HHCCCCEEEEcCChh
Confidence            444   333   23454  89998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.41  E-value=0.009  Score=53.34  Aligned_cols=90  Identities=12%  Similarity=-0.009  Sum_probs=56.1

Q ss_pred             ccCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           67 ADELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        67 ~~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ..++++++.|.|.+   .||.++|+.|++.|++|++.+|+.+..+.+.+        ..+......++..-+.+..+++.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~~~~~~Dv~d~~~v~~   97 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDP--------LAESLGVKLTVPCDVSDAESVDN   97 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHHTCCEEEECCTTCHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--------HHHhcCCeEEEEcCCCCHHHHHH
Confidence            34778899999985   89999999999999999999998654332221        11111122222222334566667


Q ss_pred             HhcccccccccCCCCCEEEeccCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ++   +++.+...+=.++||.+..
T Consensus        98 ~~---~~~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A           98 MF---KVLAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             HH---HHHHHHHSCCSEEEECCCC
T ss_pred             HH---HHHHHHcCCCCEEEECCCc
Confidence            66   5554444444577776543

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.41  E-value=0.011  Score=52.97  Aligned_cols=67  Identities=22%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccchh-----HHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLI----SLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~----~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.+|+++|=|  ++..+++..+..+|++|.+..+..-...     .+.    +.|  +..+.+++++++++|+|..-+
T Consensus       146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence            788999999985  9999999999999999999887432111     111    335  456889999999999999855

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.40  E-value=0.01  Score=52.14  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=36.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|+.++.+..
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   51 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA   51 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            67788888886 8999999999999999999999988766544

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.40  E-value=0.0045  Score=54.40  Aligned_cols=88  Identities=17%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             cccccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhH
Q 018213           64 SAEADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPES  140 (359)
Q Consensus        64 ~~~~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~  140 (359)
                      ..|.+++++++.|.|. |.||+++|+.|++.|++|.+.+|+.++.+.+.+          ++  ..++.++.+  .+..+
T Consensus        20 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~----------~~--~~~~~~~~~Dv~d~~~   87 (266)
T 3grp_A           20 GSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAA----------DL--GKDVFVFSANLSDRKS   87 (266)
T ss_dssp             -CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HH--CSSEEEEECCTTSHHH
T ss_pred             cchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------Hh--CCceEEEEeecCCHHH
Confidence            3344577888888875 889999999999999999999998765544322          11  223333333  34455


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ++.++   +++.+...+=.++||.+.
T Consensus        88 v~~~~---~~~~~~~g~iD~lvnnAg  110 (266)
T 3grp_A           88 IKQLA---EVAEREMEGIDILVNNAG  110 (266)
T ss_dssp             HHHHH---HHHHHHHTSCCEEEECCC
T ss_pred             HHHHH---HHHHHHcCCCCEEEECCC
Confidence            55555   444333333346666643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.40  E-value=0.0039  Score=56.74  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh-HHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-~~~~~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .++|+|.|.|. |.||+.+++.|.+.|++|++.+|++.... ......+.-..++.++++++|+||.+..
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            67789999997 99999999999999999999999875400 0000011111234567788999987653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.40  E-value=0.0053  Score=54.93  Aligned_cols=67  Identities=24%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc-----chhH---HHhCCCccC-------CCHHHHhhcCCEEEEe
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS-----KCDP---LISLGAKYQ-------PSPDEVAASCDVTFAM  134 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~-----~~~~---~~~~g~~~~-------~~~~~~~~~aDivi~~  134 (359)
                      +|+|.|+|. |.+|+.+++.|.+.|++|++.+|++.     +.+.   +...++...       +++.++++++|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            478999995 99999999999999999999999843     2221   222344321       2345677889999988


Q ss_pred             eCC
Q 018213          135 LAD  137 (359)
Q Consensus       135 ~p~  137 (359)
                      .+.
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            753

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.40  E-value=0.0055  Score=56.79  Aligned_cols=65  Identities=23%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-HHhCCC-ccCC---CHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGA-KYQP---SPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~-~~~~---~~~~~~~~aDivi~  133 (359)
                      +.+++|+|+|.|.+|+.+++.+.+.|++|+++|+++..... +.+.-+ ....   .+.++++.+|+|+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            56789999999999999999999999999999987653211 111100 0111   24566778998755

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.39  E-value=0.014  Score=52.57  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             cCCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccch-----hHHH----hCC--CccCCCHHHHhhcCCEEEEe
Q 018213           68 DELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        68 ~~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivi~~  134 (359)
                      .+++.+|+++|=|  ++..+++..+..+|++|.++.+..-..     +.+.    +.|  +..+.+++++++++|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            3788999999985  999999999999999999998742211     1111    335  45588999999999999985


Q ss_pred             e
Q 018213          135 L  135 (359)
Q Consensus       135 ~  135 (359)
                      +
T Consensus       244 ~  244 (325)
T 1vlv_A          244 V  244 (325)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.39  E-value=0.0041  Score=56.59  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=24.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEEEEc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  101 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d  101 (359)
                      +||||+|+|+||+.+++.|... +++|...+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            5899999999999999999875 46665443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.37  E-value=0.0065  Score=53.43  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      +.+++|.|.|. |.||..+++.|.+.|++|++.+|+++..+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~   70 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE   70 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHH
Confidence            66788999975 899999999999999999999998765443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.37  E-value=0.0047  Score=53.56  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC-ccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT-KSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~-~~~~~~  109 (359)
                      +++++|.|.|. |.||+.+++.|.+.|++|++.+|+ +++.+.
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   47 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDE   47 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHH
Confidence            66788888875 999999999999999999999998 655443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.37  E-value=0.0043  Score=57.45  Aligned_cols=68  Identities=18%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      ..+|+|.|.|. |.+|+.+++.|.+.|++|++.+|++.........++..       ..+++++++.+|+||.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            35689999987 99999999999999999999999865433222222221       1134566778999987763

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.37  E-value=0.0069  Score=53.09  Aligned_cols=42  Identities=12%  Similarity=0.083  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+..
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   46 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   46 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            66788888875 8999999999999999999999987655544

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.37  E-value=0.0052  Score=54.15  Aligned_cols=87  Identities=11%  Similarity=0.027  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++.|.|. |.||.++|+.|++.|++|++.+|+.+..+...+.       +.+.-.+...+..-+.+..+++.++  
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~--   96 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALV--   96 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHH--
Confidence            66677777775 8999999999999999999999987655443321       1111112222222333455666666  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.+...+=.++||.+
T Consensus        97 -~~~~~~~g~iD~lvnnA  113 (270)
T 3ftp_A           97 -ESTLKEFGALNVLVNNA  113 (270)
T ss_dssp             -HHHHHHHSCCCEEEECC
T ss_pred             -HHHHHHcCCCCEEEECC
Confidence             44444443445666664

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.34  E-value=0.0068  Score=52.83  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.+.
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   50 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVA   50 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            67788999986 78999999999999999999999877655443

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.34  E-value=0.0023  Score=57.03  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      |||.|.|. |-||+.+++.|.+.||+|++..|++....      +.......+.++++|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence            78999987 99999999999999999999999875421      111111223456788887654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.33  E-value=0.0031  Score=57.15  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--CCCc-----c--CCCHHHHhh--cCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAK-----Y--QPSPDEVAA--SCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~-----~--~~~~~~~~~--~aDivi~~~p  136 (359)
                      +++|+|.|.|. |.||+.+++.|.+.|++|++.+|+........+  .++.     .  ..+++++++  ..|+||.+..
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            67799999987 999999999999999999999996543221101  0111     1  112445566  7888887763

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.33  E-value=0.006  Score=53.18  Aligned_cols=43  Identities=19%  Similarity=0.249  Sum_probs=36.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~   48 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARI   48 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367788988875 8899999999999999999999987665544

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.32  E-value=0.0085  Score=54.37  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+++|.|+|+ |.+|..+++.++..|.+|++.++++++.+.+.+.|.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~  191 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF  191 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence            34688999998 999999999999999999999998777666554443

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.31  E-value=0.0049  Score=55.02  Aligned_cols=88  Identities=20%  Similarity=0.199  Sum_probs=55.0

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHH
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  143 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~  143 (359)
                      .+++++++.|.|. |.||.++++.|++.|++|++.+|+.++.+...+.       +.+. ...++.++.+  .+..+++.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dv~d~~~v~~  108 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAE-------LGEL-GAGNVIGVRLDVSDPGSCAD  108 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HTTS-SSSCEEEEECCTTCHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhh-CCCcEEEEEEeCCCHHHHHH
Confidence            3467788888875 8899999999999999999999998766544321       0000 0123333333  34455666


Q ss_pred             HhcccccccccCCCCCEEEecc
Q 018213          144 VACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ++   +++.+...+=.++||.+
T Consensus       109 ~~---~~~~~~~g~iD~lvnnA  127 (293)
T 3rih_A          109 AA---RTVVDAFGALDVVCANA  127 (293)
T ss_dssp             HH---HHHHHHHSCCCEEEECC
T ss_pred             HH---HHHHHHcCCCCEEEECC
Confidence            65   44444444445666664

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.31  E-value=0.0035  Score=60.68  Aligned_cols=63  Identities=17%  Similarity=0.275  Sum_probs=48.2

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|++.+.+...   ....+...+++.++|+||.+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence            78999999 599999999999999999999999876532211   1112344566788999998764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.30  E-value=0.003  Score=58.13  Aligned_cols=89  Identities=20%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-hCCCccC---CCHHH---HhhcCCEEEEeeCChhHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ---PSPDE---VAASCDVTFAMLADPESAM  142 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~---~~~~~---~~~~aDivi~~~p~~~~~~  142 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|...+   .+.+.   +....|+|+-++..+....
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~  259 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE  259 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHH
Confidence            568999999999999999999999999999999887766665 5564321   12221   1234688888775332333


Q ss_pred             HHhcccccccccCCCCCEEEecc
Q 018213          143 DVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ..+       ..++++..++.++
T Consensus       260 ~~~-------~~l~~~G~iv~~G  275 (357)
T 2cf5_A          260 PYL-------SLLKLDGKLILMG  275 (357)
T ss_dssp             HHH-------TTEEEEEEEEECS
T ss_pred             HHH-------HHhccCCEEEEeC
Confidence            333       3455666666554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.30  E-value=0.0047  Score=57.51  Aligned_cols=66  Identities=21%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh-HHHhCCC-ccCCC---HHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~~  134 (359)
                      +.+++|+|||.|.+|+.+++.+.+.|++|+++|+++.... ...+..+ ....+   +.++++.+|+|...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            5678999999999999999999999999999998754311 1111000 01122   55677889988553

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.29  E-value=0.0032  Score=54.97  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+...+. +      .+  ...++.++.+  .+..+++.++
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~------~~--~~~~~~~~~~Dv~~~~~v~~~~   74 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLE-I------EQ--FPGQILTVQMDVRNTDDIQKMI   74 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-H------CC--STTCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-H------Hh--cCCcEEEEEccCCCHHHHHHHH
Confidence            66788888875 8999999999999999999999987765544321 0      00  0123333333  3445566666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.+...+=.++||.+.
T Consensus        75 ---~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           75 ---EQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             ---HHHHHHHSCCCEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCC
Confidence               444444434456666643

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.29  E-value=0.0025  Score=55.43  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=31.0

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ++|.|.|. |.||+++++.|.+.|++|++.+|++++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~   38 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV   38 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            46777775 8999999999999999999999987653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.28  E-value=0.0034  Score=55.30  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      +++++|.|||.|.+|..-++.|.+.|++|++++++.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            788999999999999999999999999999998754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.28  E-value=0.0076  Score=53.32  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=33.3

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      ..++++++.|.|. |.||.++|+.|++.|++|++.+|+.
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~   44 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICH   44 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccc
Confidence            3477888989986 8899999999999999999999873

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.28  E-value=0.0058  Score=56.44  Aligned_cols=46  Identities=17%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  236 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA  236 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            45799999999999999999999998 69999998877766665554

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.27  E-value=0.0082  Score=53.18  Aligned_cols=68  Identities=15%  Similarity=0.002  Sum_probs=55.2

Q ss_pred             cCCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018213           68 DELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        68 ~~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .+++.+|+++|=   +++..+++..+..+|++|.++.+..-..+.+.+.|+..+.+++++++++|+|.. +.
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eC
Confidence            378899999997   899999999999999999998874322222334477778899999999999998 64

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.27  E-value=0.017  Score=51.84  Aligned_cols=99  Identities=13%  Similarity=0.084  Sum_probs=67.0

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh-----HHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLI----SLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~----~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+++.+|+++|= +++..+++..+..+|++|.++.+..-...     .+.    +.|  +..+.+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378899999997 89999999999999999999887432111     111    335  456889999999999999854


Q ss_pred             CC-------hhHHHHHh--c-ccccccccCCCCCEEEeccC
Q 018213          136 AD-------PESAMDVA--C-GKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       136 p~-------~~~~~~~~--~-~~~~~~~~l~~~~~vi~~s~  166 (359)
                      --       ..+....+  + -+.++++..+++++|+++..
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP  272 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP  272 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSC
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCC
Confidence            21       11111111  1 14555666677777777743

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.25  E-value=0.012  Score=51.88  Aligned_cols=87  Identities=9%  Similarity=0.020  Sum_probs=53.4

Q ss_pred             cccCCCCeEEEEcC-Ch--hhHHHHHHHHHCCCcEEEEcCCc--cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           66 EADELPGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTK--SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        66 ~~~~~~~~igiiG~-G~--iG~~ia~~l~~~g~~V~~~d~~~--~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      |..++++++.|.|. |.  ||.++|+.|.+.|++|++.+|+.  +..+.+.+.           .....++..-+....+
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~-----------~~~~~~~~~Dl~~~~~   89 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE-----------FNPAAVLPCDVISDQE   89 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG-----------GCCSEEEECCTTCHHH
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh-----------cCCceEEEeecCCHHH
Confidence            34477888989986 55  99999999999999999999986  222222211           1112222222334556


Q ss_pred             HHHHhcccccccccCCCCCEEEeccC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ++.++   +++.+...+=.++||.+.
T Consensus        90 v~~~~---~~~~~~~g~id~li~nAg  112 (280)
T 3nrc_A           90 IKDLF---VELGKVWDGLDAIVHSIA  112 (280)
T ss_dssp             HHHHH---HHHHHHCSSCCEEEECCC
T ss_pred             HHHHH---HHHHHHcCCCCEEEECCc
Confidence            66666   555444444456666644

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.25  E-value=0.0074  Score=52.44  Aligned_cols=40  Identities=15%  Similarity=0.052  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++++|.|.|. |.||+.+++.|.+.|++|++.+|++++.+
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~   51 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT   51 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            56788999975 99999999999999999999999875543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.24  E-value=0.0073  Score=52.12  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+..
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHH
Confidence            67788888886 8999999999999999999999987665543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.24  E-value=0.0098  Score=51.11  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=33.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++.|.|. |.||+++++.|.+.|++|++.+|+.++.+..
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~   43 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQ   43 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467888885 8999999999999999999999987665543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.24  E-value=0.007  Score=53.51  Aligned_cols=39  Identities=28%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .+++++++.|.|. |.||.++|+.|++.|++|++.+|++.
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~   45 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCEN   45 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            3477888989875 88999999999999999999999743

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.23  E-value=0.0042  Score=51.84  Aligned_cols=59  Identities=15%  Similarity=0.224  Sum_probs=40.5

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEee
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~  135 (359)
                      |+|.|.|. |.||+.+++.|. .|++|++.+|+++...    ..+.-.++.+++++.   .|+||.+.
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~----~D~~~~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVT----VDITNIDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEE----CCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcccee----eecCCHHHHHHHHHHhCCCCEEEECC
Confidence            58999985 999999999999 9999999999864110    011111233344443   68888765

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.23  E-value=0.0057  Score=55.73  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH----HHh-------CCCcc-------CCCHHHHhhcCC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP----LIS-------LGAKY-------QPSPDEVAASCD  129 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~----~~~-------~g~~~-------~~~~~~~~~~aD  129 (359)
                      +.+|+|.|.|. |.+|+.+++.|.+.|++|++.+|++.....    +..       .++..       ..+++++++++|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            56789999995 999999999999999999999997653222    111       12211       123455667889


Q ss_pred             EEEEeeC
Q 018213          130 VTFAMLA  136 (359)
Q Consensus       130 ivi~~~p  136 (359)
                      +||.+..
T Consensus       103 ~Vih~A~  109 (351)
T 3ruf_A          103 HVLHQAA  109 (351)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            8887764

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.23  E-value=0.016  Score=52.42  Aligned_cols=99  Identities=9%  Similarity=0.021  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccchh-----HHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLI----SLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~----~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.+|+++|=|  ++..+++..++.+|++|.++.+..-...     .+.    +.|  +..+.+++++++++|+|..-+
T Consensus       153 l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (333)
T 1duv_G          153 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV  232 (333)
T ss_dssp             GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCC
Confidence            677999999986  9999999999999999999887422111     111    345  455889999999999999855


Q ss_pred             CC--------hhHHHHHh--c-ccccccccC-CCCCEEEeccCC
Q 018213          136 AD--------PESAMDVA--C-GKHGAASGM-GPGKGYVDVSTV  167 (359)
Q Consensus       136 p~--------~~~~~~~~--~-~~~~~~~~l-~~~~~vi~~s~~  167 (359)
                      --        ..+-...+  + -+.++++.. +++.+|+.+...
T Consensus       233 w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (333)
T 1duv_G          233 WVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  276 (333)
T ss_dssp             SSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             ccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCC
Confidence            21        11111111  1 145666667 778888877443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.22  E-value=0.0089  Score=52.13  Aligned_cols=41  Identities=15%  Similarity=0.094  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   48 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND   48 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            56788888875 899999999999999999999998765443

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.22  E-value=0.0075  Score=52.23  Aligned_cols=41  Identities=20%  Similarity=0.137  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   46 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRA   46 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            56688888875 899999999999999999999998765443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.22  E-value=0.0049  Score=53.79  Aligned_cols=85  Identities=16%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|+.+..+...+.       +.+  ...++.++.+  .+..+++.++
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~d~~~v~~~~   80 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA-------IRQ--AGGKAIGLECNVTDEQHREAVI   80 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHHHH
Confidence            66788888875 8899999999999999999999987655443321       111  1233433333  3345555555


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        81 ---~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           81 ---KAALDQFGKITVLVNNA   97 (256)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHcCCCCEEEECC
Confidence               44444443445666654

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.21  E-value=0.0048  Score=54.36  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             eEEEEcC-ChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           73 RIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        73 ~igiiG~-G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      +|.|.|. |.+|+.+++.|.+.  |++|++.+|++++.+.+...++..       .+++.++++++|+||.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4788986 99999999999998  999999999887665554444322       1234456778898887664

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.20  E-value=0.0055  Score=54.36  Aligned_cols=86  Identities=14%  Similarity=0.048  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      +.++++.|.|. |.||.++|+.|++.|++|++.+|+.+..+...+.       +.+  ...++.++.+  .+..+++.++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~~~   96 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADE-------IVG--AGGQAIALEADVSDELQMRNAV   96 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HTT--TTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH
Confidence            66778888875 8899999999999999999999987665544321       000  1223443333  3445566666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.+...+=.++||.+.
T Consensus        97 ---~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           97 ---RDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             ---HHHHHHHSCCCEEEECCC
T ss_pred             ---HHHHHHhCCCCEEEECCC
Confidence               444444444456666543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.20  E-value=0.0051  Score=54.04  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +.++++.|.|. |.||.++|+.|++.|++|++.+|+.++.+..
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   44 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAI   44 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34577878875 8899999999999999999999987665543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.20  E-value=0.0077  Score=52.20  Aligned_cols=42  Identities=17%  Similarity=0.104  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|++++.+..
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~   46 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAA   46 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            67788989986 8899999999999999999999987655543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.20  E-value=0.0027  Score=56.10  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      ++++++.|.|. |.||.++|+.|.+.|++|++.+|+.++.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~   43 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVAN   43 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhh
Confidence            66788888885 8899999999999999999999987653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.20  E-value=0.0093  Score=54.67  Aligned_cols=67  Identities=15%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch--hHHHhC-CCcc--CC---C---HHHHhhcCCEEEEeeC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISL-GAKY--QP---S---PDEVAASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~--~~~~~~-g~~~--~~---~---~~~~~~~aDivi~~~p  136 (359)
                      .+|+|.|.|. |.+|+.+++.|.+.|++|++.+|++++.  +.+... ++..  .+   +   +.++++.+|+||.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~   82 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   82 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence            3578999985 9999999999999999999999987654  233321 2211  11   2   4566788999997764

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.19  E-value=0.018  Score=51.54  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             cCCCCeEEEEcC---ChhhHHHHHHHHHC-CCcEEEEcCCccch-----hHHHhCCC--ccCCCHHHHhhcCCEEEEeeC
Q 018213           68 DELPGRIGFLGM---GIMGTPMAQNLLKA-GCDVTVWNRTKSKC-----DPLISLGA--KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        68 ~~~~~~igiiG~---G~iG~~ia~~l~~~-g~~V~~~d~~~~~~-----~~~~~~g~--~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .+++.+|+++|=   +++..+++..+..+ |++|.+..+..-..     +.+.+.|.  ..+.+++++++++|+|..-.-
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            378899999998   59999999999999 99999988742211     22233454  356899999999999988652


Q ss_pred             Chh-----HHHHH--hc-ccccccccCCCCCEEEeccC
Q 018213          137 DPE-----SAMDV--AC-GKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       137 ~~~-----~~~~~--~~-~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ..+     +....  -+ -+++++...+++++|+++..
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  268 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  268 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence            111     11110  01 14566666777777777643

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.19  E-value=0.0059  Score=54.00  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|+++..+..
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   51 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGA   51 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            67788888875 8999999999999999999999987665443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.19  E-value=0.012  Score=51.85  Aligned_cols=87  Identities=11%  Similarity=0.015  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++++++.|.|.   |.||.++++.|.+.|++|++.+|+++ .+...+       .+.+......++..-+.+..+++.++
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~-------~l~~~~~~~~~~~~D~~~~~~v~~~~   75 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVR-------PIAQELNSPYVYELDVSKEEHFKSLY   75 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHH-------HHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHH-------HHHHhcCCcEEEEcCCCCHHHHHHHH
Confidence            66788999997   69999999999999999999999875 221111       01111112233333344455666666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.....+=.++||.+.
T Consensus        76 ---~~~~~~~g~id~lv~nAg   93 (275)
T 2pd4_A           76 ---NSVKKDLGSLDFIVHSVA   93 (275)
T ss_dssp             ---HHHHHHTSCEEEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCc
Confidence               444443333346666643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.18  E-value=0.0072  Score=56.05  Aligned_cols=46  Identities=17%  Similarity=0.113  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|+|.|.+|...++.++..| .+|++.++++++.+.+.+.|+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa  241 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA  241 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence            4678999999999999999999999 699999998877776665554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.18  E-value=0.0071  Score=52.87  Aligned_cols=41  Identities=15%  Similarity=0.154  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   46 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEK   46 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            56788888875 899999999999999999999998765443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.17  E-value=0.0056  Score=54.14  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||.++|+.|++.|++|++.+|++++.+...+.       +.+  ...++.++.+  .+..+++.++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~~~   92 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG-------LRA--AGHDVDGSSCDVTSTDEVHAAV   92 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHHHH
Confidence            45677888875 8999999999999999999999987655443321       100  0223433333  3445566665


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        93 ---~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           93 ---AAAVERFGPIGILVNSA  109 (279)
T ss_dssp             ---HHHHHHHCSCCEEEECC
T ss_pred             ---HHHHHHcCCCcEEEECC
Confidence               44444443435666664

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.17  E-value=0.0085  Score=52.48  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   52 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA   52 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            66788888875 899999999999999999999998765443

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.17  E-value=0.018  Score=50.30  Aligned_cols=88  Identities=15%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. |.||.++++.|++.|++|++.+|++++.+...+.       +.+......+.++.+  .+..+++.++
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~~~   78 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESA-------LRQRFPGARLFASVCDVLDALQVRAFA   78 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHhcCCceEEEEeCCCCCHHHHHHHH
Confidence            66788888875 8899999999999999999999987665443321       111111222444333  3445666666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.+...+=.++||.+.
T Consensus        79 ---~~~~~~~g~id~lvnnAg   96 (265)
T 3lf2_A           79 ---EACERTLGCASILVNNAG   96 (265)
T ss_dssp             ---HHHHHHHCSCSEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCC
Confidence               444444444456777643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.17  E-value=0.0069  Score=55.50  Aligned_cols=47  Identities=21%  Similarity=0.349  Sum_probs=39.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~  115 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa  212 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA  212 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC
Confidence            356789999999999999999999998 89999998877666655554

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.17  E-value=0.017  Score=52.24  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccchh-----HHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLI----SLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~----~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.+|+++|=|  +++.+++..+..+|++|.++.+..-...     .+.    +.|  +..+.+++++++++|+|..-+
T Consensus       153 l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (335)
T 1dxh_A          153 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV  232 (335)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             cCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCC
Confidence            677999999986  9999999999999999999887432111     111    335  456889999999999999855


Q ss_pred             CC--------hhHHHHHh--c-ccccccccC-CCCCEEEeccCC
Q 018213          136 AD--------PESAMDVA--C-GKHGAASGM-GPGKGYVDVSTV  167 (359)
Q Consensus       136 p~--------~~~~~~~~--~-~~~~~~~~l-~~~~~vi~~s~~  167 (359)
                      --        ..+-...+  + -+.++++.. +++.+|+.+...
T Consensus       233 w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (335)
T 1dxh_A          233 WVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  276 (335)
T ss_dssp             CSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             ccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCC
Confidence            20        01111111  1 145666667 778888887543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.16  E-value=0.0088  Score=52.24  Aligned_cols=41  Identities=15%  Similarity=0.168  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   46 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHE   46 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            56788888875 899999999999999999999998765443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.16  E-value=0.0041  Score=54.85  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=36.1

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      +++++++.|.|. |.||.++|+.|++.|++|++.+|++++.+..
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQT   66 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            377788888875 8999999999999999999999987665443

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.16  E-value=0.0026  Score=58.09  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCC---cEEEEc-CCc-cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGC---DVTVWN-RTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~---~V~~~d-~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++|+||| .|..|..+.+.|....|   ++.... ++. .+.-.+........+...+.+.++|+|+.|+| ....+...
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~s~~~a   80 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAG-SAMSKVQA   80 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSC-HHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCC-hHHHHHHH
Confidence            6899999 69999999999998754   344443 221 11000110001111011133478999999998 44444444


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         +.+   ++.|..+||.|..
T Consensus        81 ---~~~---~~~G~~vID~Sa~   96 (344)
T 3tz6_A           81 ---PRF---AAAGVTVIDNSSA   96 (344)
T ss_dssp             ---HHH---HHTTCEEEECSST
T ss_pred             ---HHH---HhCCCEEEECCCc
Confidence               332   4578899999874

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.16  E-value=0.011  Score=51.74  Aligned_cols=41  Identities=12%  Similarity=0.035  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   46 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA   46 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            56788988885 899999999999999999999998765444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.15  E-value=0.014  Score=55.70  Aligned_cols=113  Identities=10%  Similarity=0.105  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCh----------hhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------CCCccCCCHHHHh
Q 018213           69 ELPGRIGFLGMGI----------MGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------LGAKYQPSPDEVA  125 (359)
Q Consensus        69 ~~~~~igiiG~G~----------iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------~g~~~~~~~~~~~  125 (359)
                      +++++|+|+|+--          -...+++.|.+.|.+|.+||+.....+....             .++..+.+..+.+
T Consensus       327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (467)
T 2q3e_A          327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEAC  406 (467)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHH
T ss_pred             cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHH
Confidence            6789999999864          6889999999999999999996432211010             0244556888899


Q ss_pred             hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +++|+|++++..+ +.+.+=  -+.+...|+...+|+|.-+....    ..+.+...|..|..
T Consensus       407 ~~ad~~vi~t~~~-~f~~~~--~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~  462 (467)
T 2q3e_A          407 DGAHAVVICTEWD-MFKELD--YERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIET  462 (467)
T ss_dssp             TTCSEEEECSCCG-GGGGSC--HHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEE
T ss_pred             hCCcEEEEecCCh-hhhcCC--HHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEE
Confidence            9999999999643 443321  02334456666668887444321    11234455666655

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.15  E-value=0.01  Score=51.61  Aligned_cols=43  Identities=12%  Similarity=0.140  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      +++++|.|.|. |.||+.+++.|.+.|++|++.+|+++..+...
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETV   48 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            56688989975 99999999999999999999999876655443

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.14  E-value=0.02  Score=50.93  Aligned_cols=97  Identities=14%  Similarity=-0.009  Sum_probs=65.4

Q ss_pred             cCCCCeEEEEcC---ChhhHHHHHHHHHC-CCcEEEEcCCccchhH--HHhCCC--ccCCCHHHHhhcCCEEEEeeCCh-
Q 018213           68 DELPGRIGFLGM---GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDP--LISLGA--KYQPSPDEVAASCDVTFAMLADP-  138 (359)
Q Consensus        68 ~~~~~~igiiG~---G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~--~~~~g~--~~~~~~~~~~~~aDivi~~~p~~-  138 (359)
                      .+++.+|+++|=   +++..+++..+..+ |++|.+..+..-....  +.+.|.  ..+.+++++++++|+|..-.--. 
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            378899999997   59999999999999 9999999874322221  223354  35679999999999998866322 


Q ss_pred             -----hHHHHHh--c-ccccccccCCCCCEEEec
Q 018213          139 -----ESAMDVA--C-GKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       139 -----~~~~~~~--~-~~~~~~~~l~~~~~vi~~  164 (359)
                           .+.....  + -++++++..+++++|+++
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~  259 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP  259 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECC
Confidence                 1111111  1 144555556666666666

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.13  E-value=0.0069  Score=54.25  Aligned_cols=65  Identities=9%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p  136 (359)
                      +|+|.|.|. |.+|+.+++.|.+.|++|++.+|+++... .....+.-..++.++++.  .|+||.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            378999987 99999999999999999999998654311 111112222345566664  899988763

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.13  E-value=0.014  Score=50.93  Aligned_cols=42  Identities=19%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||+++++.|.+.|++|++.+|++++.+..
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   52 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAV   52 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56788988875 8999999999999999999999987655443

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.12  E-value=0.021  Score=49.82  Aligned_cols=87  Identities=15%  Similarity=0.032  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      ++++++.|.|.   |.||.++++.|.+.|++|++.+|++ +.+...+       .+.+......++..-+.+..+++.++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~-------~l~~~~~~~~~~~~D~~~~~~v~~~~   78 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVE-------EFAAQLGSDIVLQCDVAEDASIDTMF   78 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHH-------HHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHH-------HHHHhcCCcEEEEccCCCHHHHHHHH
Confidence            56688888887   6999999999999999999999986 2221111       01111112223333334455666666


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +++.+...+=.++||.+.
T Consensus        79 ---~~~~~~~g~iD~lv~~Ag   96 (265)
T 1qsg_A           79 ---AELGKVWPKFDGFVHSIG   96 (265)
T ss_dssp             ---HHHHTTCSSEEEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCC
Confidence               444444433346777654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.12  E-value=0.015  Score=50.59  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      ++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+..
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHH
Confidence            56788989975 9999999999999999999999987665543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.12  E-value=0.0077  Score=54.97  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPL  110 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~  110 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  205 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFA  205 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            56889999999999999999999999 999999987665543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.12  E-value=0.0078  Score=53.16  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=32.5

Q ss_pred             ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ..++++++.|.|. |.||.++|+.|++.|++|++.+|+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~   48 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDIC   48 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecc
Confidence            3477788888885 889999999999999999999985

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.11  E-value=0.014  Score=52.54  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=45.2

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcC--CccchhH----HHhC------CCccC--C-CHHHHhhcCCEEEE
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNR--TKSKCDP----LISL------GAKYQ--P-SPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~--~~~~~~~----~~~~------g~~~~--~-~~~~~~~~aDivi~  133 (359)
                      |||.|+|+ |.+|+.++..|...|+  ++.++|+  ++++.+.    +.+.      .....  + ++.+.++++|+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            58999999 9999999999988775  6888998  5433221    1110      11221  1 24778899999999


Q ss_pred             ee
Q 018213          134 ML  135 (359)
Q Consensus       134 ~~  135 (359)
                      +.
T Consensus        81 ~A   82 (313)
T 1hye_A           81 TS   82 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	2e-39
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	6e-36
d1vpda1	133	a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge	2e-28
d3cuma1	134	a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge	2e-26
d2cvza2	156	c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase	3e-26
d2cvza1	132	a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge	4e-26
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	2e-23
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	1e-22
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	3e-22
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	7e-19
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	5e-10
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	1e-09
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	4e-09
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	1e-07
d2ahra2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	3e-07
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	3e-07
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	2e-06
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	2e-06
d1yqga2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	2e-05
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	1e-04
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	0.001
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	0.003

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  135 bits (341), Expect = 2e-39
 Identities = 57/160 (35%), Positives = 90/160 (56%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++GF+G+GIMG PM++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            ML +     +VA G++G   G  PG   +D+S++    S+ I+  +KA G   L+APVS
Sbjct: 62  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 121

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
           G +  A DG L  +  GDK++++    L+  M  S  + G
Sbjct: 122 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  126 bits (316), Expect = 6e-36
 Identities = 51/160 (31%), Positives = 81/160 (50%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I F+G+G MG PMA NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 3   QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 62

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           +ML   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 63  SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS 122

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
           G    A  G L F+  GD        PL + MG++ F+ G
Sbjct: 123 GGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 31/124 (25%), Positives = 60/124 (48%)

Query: 233 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS 292
           D+G G   KL   +I+   +A  SE L  + K G++P+++ + +  G   + +   K P 
Sbjct: 1   DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60

Query: 293 MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 352
           +++  +   F +    KDL  AL  +  V    P+ AA  E+ +  ++ G  ++D SA+ 
Sbjct: 61  VMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALA 120

Query: 353 EALK 356
              +
Sbjct: 121 CYYE 124

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  100 bits (249), Expect = 2e-26
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 234 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-------PMY 286
            G G   K+  N ++  +M   +E +      GL+  VL E++ + +          P  
Sbjct: 2   DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61

Query: 287 SLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 346
            +   +     Y   F  +   KDL LA   A++ + STP+ + A  LY++    G ++ 
Sbjct: 62  GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121

Query: 347 DFSAVIEALKAKK 359
           DFS V +     +
Sbjct: 122 DFSVVQKLFDPTQ 134

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           ++ F+G+G MG PMA +L +      VWNRT  K               + VA +  +  
Sbjct: 2   KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFT 60

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            +     +  +V          +  G  +VD ++ + + S+ +   ++  G ++L+APVS
Sbjct: 61  CL----PTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 116

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232
           G    AE G L  +  G +     V P L    K   ++G
Sbjct: 117 GGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVG 155

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 99.0 bits (246), Expect = 4e-26
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 1/124 (0%)

Query: 234 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV-SQGAISAPMYSLKGPS 292
           VG G A+K + N ++   +    EGLL   K G+     +EV+ +    S    +L    
Sbjct: 1   VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR 60

Query: 293 MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 352
           ++   +P  F L    KDL +A+G+ +     +P+   A E+Y++AK     D D    +
Sbjct: 61  VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEAL 120

Query: 353 EALK 356
             L+
Sbjct: 121 RLLE 124

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 93.5 bits (231), Expect = 2e-23
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 13/177 (7%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            +G +G+G+MG  +A N+ + G  V V+NRT SK +  +   A    + +  A      F
Sbjct: 3   DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62

Query: 133 AMLADPESAM--------DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 184
           A                                G   VD               ++A G 
Sbjct: 63  AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122

Query: 185 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK----SRFYLGDVGNG 237
            FL   +SG ++ A  G   F   G  S++  + P+++         R  +   G+G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFP-GGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 91.2 bits (225), Expect = 1e-22
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
            I  +G+ +MG  +  N+   G  V  +NRT SK D  ++  AK        +    V+ 
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63

Query: 133 AMLADPESAMDVAC-----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187
                    +  A              +  G   +D    +   +      +K  G  F+
Sbjct: 64  LKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV 123

Query: 188 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226
            + VSG +  A  G  +    G+K  +  +  +   +  
Sbjct: 124 GSGVSGGEDGARYGPSLMP-GGNKEAWPHIKAIFQGIAA 161

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 89.5 bits (221), Expect = 3e-22
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 12/161 (7%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           R+GF+G G +   +A  L   G +V      +S      +       + +E   SC V  
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
           + +    +             G      YVD++ +  +T ++ +  I+  G     A + 
Sbjct: 62  SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLIEKGGFVD--AAIM 113

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
           GS +       I  +  D          L+  G +    G 
Sbjct: 114 GSVRRKGADIRIIASGRDA----EEFMKLNRYGLNIEVRGR 150

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.4 bits (197), Expect = 7e-19
 Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 10/160 (6%)

Query: 74  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
           + F+G G +     + L        + +R+  +   L  +      + ++      V F 
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61

Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
           +       +     K  A          V  S      S  I             +  S 
Sbjct: 62  I-------VPDRYIKTVANHLNLGDAVLVHCSGF---LSSEIFKKSGRASIHPNFSFSSL 111

Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
            K      Q++F   GD+     V  + + +    F +  
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 17/158 (10%), Positives = 41/158 (25%), Gaps = 23/158 (14%)

Query: 72  GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
            +I  +G  G +G   A+ L  +G  +++ +R        I   A        +  + + 
Sbjct: 10  HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 69

Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE 188
              +                    +       D+++V  +    +         G   + 
Sbjct: 70  IERLKPY-----------------LTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMF 112

Query: 189 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226
                S        ++         Y  +   + I G 
Sbjct: 113 GADIASMAKQV---VVRCDGRFPERYEWLLEQIQIWGA 147

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IG +G+G++G  +A +L + G  +   +R +S C+  +      +   D          
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLS-LLQTAKI 60

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATGASFLEAPV 191
             L  P   +     K      + P     DV++V    ++  +       G   +    
Sbjct: 61  IFLCTPIQLILPTLEKLIPH--LSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTA 118

Query: 192 SGSKKPAEDGQ-------LIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
           +     AE+         L      D      +  +L+ +G  + YL
Sbjct: 119 AQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLG-VKIYL 164

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDV 130
            +  LG G +  P    L  +G  VTV  RT      L +    +          A+ D 
Sbjct: 4   SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA 63

Query: 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 174
             A      S +          S +   K  V  S V     +L
Sbjct: 64  EVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMEL 107

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 24/200 (12%), Positives = 56/200 (28%), Gaps = 19/200 (9%)

Query: 73  RIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
           R+  L G G +G  +A  L   G ++ V +R + K +   +   +            +  
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61

Query: 132 FAMLADPESAMDVACGKHGAASGM------------------GPGKGYVDVSTVDGDTSK 173
                     +        A                        G  Y    +     ++
Sbjct: 62  AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121

Query: 174 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
           ++      +    + A    +     D  +      D+S    ++ + +I G      G 
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181

Query: 234 VGNGAAMKLVVNMIMGSMMA 253
           + N   ++ +  +I+  M  
Sbjct: 182 LSNSRLVESLTPLILNIMRF 201

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 9/155 (5%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +IG +G+G M + + + L +   ++ +   +  +   +    A       +         
Sbjct: 2   KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 61

Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
            +   P+    V    H     +    G             L    I     + +    +
Sbjct: 62  ILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSST 121

Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227
                     L   A   + L   V  L D  G +
Sbjct: 122 A---------LTGNALVSQELQARVRDLTDSFGST 147

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 4/117 (3%)

Query: 113 LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172
           +G K      E     D+    L       D+       A  +  G       T+     
Sbjct: 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKF 183

Query: 173 KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229
             I   +     +   +   G     +    I      +   N +  +  I     F
Sbjct: 184 AKIFKDLGREDLNIT-SYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAF 239

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114
               LG+G  G   A  L   G  V  W+    +   +   G
Sbjct: 3   TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG 44

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +I  LG G +G      L K G +V  W R       +  +        + + A+     
Sbjct: 2   KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61

Query: 133 AM 134
           A 
Sbjct: 62  AT 63

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 131
            + FLG G M   +A  L+K G   + + NR   K + L         +      S DV 
Sbjct: 2   NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVL 61

Query: 132 FAMLADPESAMDVACGKHGAASGMGPGKGY 161
              +   +        +   A  +    G 
Sbjct: 62  ILAVKPQDMEAACKNIRTNGALVLSVAAGL 91

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107
            +  LG G MG+ ++  L+  G +V +W       
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
           +    G G  GT +A  L K   +V VW+  + +   +               AS     
Sbjct: 9   KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT 68

Query: 133 AMLADPESAMDV 144
           + +    +  ++
Sbjct: 69  SDVEKAYNGAEI 80

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 73  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107
            +  +G G+MG  +AQ     G  V + ++T+   
Sbjct: 6   HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.96
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.95
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.93
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.93
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.93
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.92
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.92
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.9
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.88
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.86
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.84
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.82
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.81
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.8
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.76
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.73
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.73
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.55
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.53
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.48
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.47
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.45
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.42
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.41
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.21
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.16
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.94
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.83
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.78
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.74
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.6
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.58
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.56
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.55
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.54
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.52
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.51
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.47
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.34
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.28
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.26
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.23
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.15
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.13
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.12
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.12
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.1
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.08
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.08
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.07
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.05
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.03
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.03
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.0
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.99
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.99
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.98
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.98
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.97
d1mv8a1	98	GDP-mannose 6-dehydrogenase, middle domain {Pseudo	97.96
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.95
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.92
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.91
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.85
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.85
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.83
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.82
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.82
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.81
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.8
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.76
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.73
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.72
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.69
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.69
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.66
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.64
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.61
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.58
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.53
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.49
d1dlja1	98	UDP-glucose dehydrogenase (UDPGDH), middle domain	97.49
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.46
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.46
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.45
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.43
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.43
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.32
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.32
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.31
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.31
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.3
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.28
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.27
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	97.26
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.25
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.19
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.17
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.11
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.09
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.07
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.01
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.0
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	96.98
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.95
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.92
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.9
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.87
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.86
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.83
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.83
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.82
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.79
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	96.79
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.76
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.74
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.74
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.72
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.71
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.68
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.68
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.65
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.64
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.61
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.6
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.58
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.56
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.56
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.55
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.53
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.53
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.5
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.5
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.5
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.49
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.49
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.48
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.48
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.48
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.48
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.48
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.47
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.47
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.43
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.42
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.41
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.41
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.37
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.36
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.33
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.31
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.24
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.24
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.2
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.18
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.15
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.15
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.15
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.1
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.06
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.04
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.99
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.97
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.96
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	95.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.91
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.9
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.9
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.85
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.82
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.82
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.8
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.79
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.76
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.69
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	95.69
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	95.69
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.69
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.68
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.68
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.68
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.61
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.55
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.52
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.5
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.48
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.47
d1i36a1	112	Conserved hypothetical protein MTH1747 {Archaeon M	95.45
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.41
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.38
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.37
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.3
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.21
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.21
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.18
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.11
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	95.07
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	95.07
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.05
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.04
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.98
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.95
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.95
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.93
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	94.89
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.85
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.78
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.76
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.73
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.7
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.64
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.53
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.52
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.48
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.47
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.47
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.45
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.44
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.3
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.25
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.13
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.11
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.09
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.04
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.03
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.03
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.91
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.8
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.72
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.7
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.69
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.69
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.65
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.58
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.58
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.5
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	93.47
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.44
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.39
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	93.38
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.3
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.15
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.09
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	92.96
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.91
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.86
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	92.65
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.6
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	92.5
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.43
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.41
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.38
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.35
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.19
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.04
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.73
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.68
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	91.65
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.63
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	91.6
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.54
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.49
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.45
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.4
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.3
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.22
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.12
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	91.1
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.85
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.8
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.77
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.7
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.61
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.6
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.53
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.39
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.37
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.19
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.1
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.71
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.23
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.14
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	89.07
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.94
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	88.81
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.69
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.55
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.44
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.42
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.4
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	88.38
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	88.27
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	87.94
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.75
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	87.69
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.6
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.52
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.41
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	87.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.3
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	87.19
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	87.04
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.67
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.62
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	86.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	86.54
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.23
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.01
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.91
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.86
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	85.81
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.8
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	85.76
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	85.67
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	85.42
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	85.29
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.89
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	84.69
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	84.52
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.43
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.28
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	84.08
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.92
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	83.77
d1bg6a1	172	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.58
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.44
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.02
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	82.87
d2fzva1	233	Putative arsenical resistance protein {Shigella fl	82.86
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.12
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	82.07
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	81.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.3
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	81.07
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	80.87
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.7
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	80.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	80.64
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	80.6
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.42

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=3.3e-29  Score=205.62  Aligned_cols=161  Identities=35%  Similarity=0.620  Sum_probs=152.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |||||||+|+||..+|++|.+.|++|++|||++++.+.+.+.+.....++.|+++++|+|++|+|.+++++.++++...+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999998665678


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      ...+++++++||+++..|.....+.+.+++++++|+++|+++++..+..+.+.++++|+++.+++++++|+.++.+++++
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~  160 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  160 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence            88899999999999999999999999999999999999999999998899999999999999999999999999999887


Q ss_pred             C
Q 018213          232 G  232 (359)
Q Consensus       232 g  232 (359)
                      |
T Consensus       161 G  161 (161)
T d1vpda2         161 G  161 (161)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.4e-27  Score=196.02  Aligned_cols=162  Identities=31%  Similarity=0.547  Sum_probs=151.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      +++|||||+|.||.++|++|.+.||+|.+|||++++.+.+...+.....++.|++..+|+|++|+|.++..+.++.....
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            36899999999999999999999999999999999988888888888899999999999999999999888888744455


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +...+.+++++||+++..|.....+.+.++++++.|+++|++|++..+..+++.++++|+++.+++++++|+.++.++++
T Consensus        81 ~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~  160 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH  160 (162)
T ss_dssp             HHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEE
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eC
Q 018213          231 LG  232 (359)
Q Consensus       231 ~g  232 (359)
                      +|
T Consensus       161 ~G  162 (162)
T d3cuma2         161 AG  162 (162)
T ss_dssp             EE
T ss_pred             Cc
Confidence            75

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.95  E-value=3.1e-29  Score=210.10  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=146.6

Q ss_pred             cCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHC
Q 018213           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA   93 (359)
Q Consensus        14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~   93 (359)
                      +|+||++++++|+++|++..+++.++.+.|..+....+..+             ++.+++|||||+|+||+.+|+++..+
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~-------------~l~g~tvgIiG~G~IG~~va~~l~~f   69 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGE-------------KLDNKTLGIYGFGSIGQALAKRAQGF   69 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBC-------------CCTTCEEEEECCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccc-------------eecccceEEeecccchHHHHHHHHhh
Confidence            57899999999999999999999999999975432222111             27889999999999999999999999


Q ss_pred             CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHH
Q 018213           94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK  173 (359)
Q Consensus        94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~  173 (359)
                      |++|.+||++..........+.....++++++++||+|++|+|.+++|++++  +++.+..||+++++||++||..++++
T Consensus        70 g~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~  147 (191)
T d1gdha1          70 DMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAIVVNTARGDLVDNE  147 (191)
T ss_dssp             TCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             ccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhhee--cHHHhhCcCCccEEEecCCccchhhH
Confidence            9999999987665444444456667799999999999999999999999999  89999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeecCCCCCCCc
Q 018213          174 LINGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       174 ~l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      +|.++|+++.+.....+++..+|
T Consensus       148 aL~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1         148 LVVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTTT
T ss_pred             HHHHHHHcCCceEEEEECCCCCC
Confidence            99999999988888888887776

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=4.1e-28  Score=202.47  Aligned_cols=163  Identities=16%  Similarity=0.161  Sum_probs=141.5

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      |+||++++++|+++|++..+.+.++++.|.......   +             ++.++++||||+|+||+.+|+.+..+|
T Consensus         4 sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~---~-------------~l~~k~vgiiG~G~IG~~va~~~~~fg   67 (184)
T d1ygya1           4 SAAEHALALLLAASRQIPAADASLREHTWKRSSFSG---T-------------EIFGKTVGVVGLGRIGQLVAQRIAAFG   67 (184)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCB---C-------------CCTTCEEEEECCSHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccc---c-------------cccceeeeeccccchhHHHHHHhhhcc
Confidence            689999999999999999999999999997322111   1             177899999999999999999999999


Q ss_pred             CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHH
Q 018213           95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  174 (359)
Q Consensus        95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  174 (359)
                      ++|.+||++..... ....++.. .+++|++++||+|++|+|.+++|++++  +++.+..|++++++||++||..+++++
T Consensus        68 ~~v~~~d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~li--n~~~l~~mk~~a~lIN~sRG~iVde~a  143 (184)
T d1ygya1          68 AYVVAYDPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVIIVNAARGGLVDEAA  143 (184)
T ss_dssp             CEEEEECTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred             ceEEeecCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhh--hHHHHhhhCCCceEEEecchhhhhhHH
Confidence            99999999765433 33334544 589999999999999999999999999  889999999999999999999999999


Q ss_pred             HHHHHHhcCCeeecCCCCCCCcc
Q 018213          175 INGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       175 l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |.++|+++.+.....+++..+|.
T Consensus       144 L~~aL~~~~i~~a~lDV~~~EP~  166 (184)
T d1ygya1         144 LADAITGGHVRAAGLDVFATEPC  166 (184)
T ss_dssp             HHHHHHTSSEEEEEESSCSSSSC
T ss_pred             HHHHHhcCcEeEEEEeCCCCCCC
Confidence            99999999888888888877764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.93  E-value=2.7e-28  Score=204.51  Aligned_cols=171  Identities=13%  Similarity=0.051  Sum_probs=144.0

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      ++||++++++|+++|++..+++.+++|.|........  +.       .....++.+++|||||+|+||+.+|+.+..+|
T Consensus         2 ~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~--~~-------~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg   72 (193)
T d1mx3a1           2 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIR--EV-------ASGAARIRGETLGIIGLGRVGQAVALRAKAFG   72 (193)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHH--HH-------TTTCCCCTTCEEEEECCSHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHcCCccccccccc--cc-------ccCceeeeCceEEEeccccccccceeeeeccc
Confidence            4689999999999999999999999999975321100  00       01122388999999999999999999999999


Q ss_pred             CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHH
Q 018213           95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  174 (359)
Q Consensus        95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  174 (359)
                      ++|.+||+.... ......++....++++++++||+|++|+|.+++|++++  +++.+..|++++++||++||..+++++
T Consensus        73 ~~v~~~d~~~~~-~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~a  149 (193)
T d1mx3a1          73 FNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQGAFLVNTARGGLVDEKA  149 (193)
T ss_dssp             CEEEEECTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred             cceeeccCcccc-cchhhhccccccchhhccccCCEEEEeecccccchhhh--hHHHHhccCCCCeEEecCCceEEcHHH
Confidence            999999997654 33334467778899999999999999999999999999  889999999999999999999999999


Q ss_pred             HHHHHHhcCCeeecCCCCCCCcc
Q 018213          175 INGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       175 l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      |.++++++.+.....+++..+|.
T Consensus       150 L~~aL~~~~i~~a~lDV~~~EP~  172 (193)
T d1mx3a1         150 LAQALKEGRIRGAALDVHESEPF  172 (193)
T ss_dssp             HHHHHHHTSEEEEEESCCSSSSC
T ss_pred             HHHHHHcCCceEEEEEcCCCCCC
Confidence            99999999888777777776653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.93  E-value=5e-28  Score=203.00  Aligned_cols=170  Identities=9%  Similarity=0.036  Sum_probs=146.3

Q ss_pred             cCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHC
Q 018213           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA   93 (359)
Q Consensus        14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~   93 (359)
                      +++||++++++|++.|++..+...++.+.|......       ..       ..++.+++|||||+|+||+.+|+.+..+
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~-------~~-------~~~l~~~~vgiiG~G~IG~~va~~l~~f   66 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCV-------SH-------AYDLEAMHVGTVAAGRIGLAVLRRLAPF   66 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH-------TT-------CCCCTTCEEEEECCSHHHHHHHHHHGGG
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccC-------Cc-------ceeccccceeeccccccchhhhhhhhcc
Confidence            468899999999999999999999999999632111       01       1127889999999999999999999999


Q ss_pred             CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHH
Q 018213           94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK  173 (359)
Q Consensus        94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~  173 (359)
                      |++|.+||+...........++....++++++++||+|++|+|.+++|++++  +++.++.|++|+++||++||..++++
T Consensus        67 g~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li--~~~~l~~mk~ga~lIN~aRG~ivd~~  144 (188)
T d2naca1          67 DVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIVNTARGKLCDRD  144 (188)
T ss_dssp             TCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             CceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh--HHHHHHhCCCCCEEEecCchhhhhHH
Confidence            9999999997655555555577788899999999999999999999999999  89999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeecCCCCCCCcccc
Q 018213          174 LINGHIKATGASFLEAPVSGSKKPAE  199 (359)
Q Consensus       174 ~l~~~l~~~~~~~~~~~~~~~~~~~~  199 (359)
                      +|.++++++.+.....+++..+|...
T Consensus       145 aL~~aL~~g~i~ga~lDV~~~EP~~~  170 (188)
T d2naca1         145 AVARALESGRLAGYAGDVWFPQPAPK  170 (188)
T ss_dssp             HHHHHHHTTSEEEEEESCCSSSSCCT
T ss_pred             HHHHHHhCCCceeEEEeCCCCCCCCC
Confidence            99999999988877777877665433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.93  E-value=2.5e-27  Score=196.67  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=136.6

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      +++|++++++|+++|++..+.+.++.++|.......    .             +.+++|||||+|+||+.+|+.+..+|
T Consensus         3 aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~----~-------------l~gk~vgIiG~G~IG~~va~~l~~~g   65 (181)
T d1qp8a1           3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIP----L-------------IQGEKVAVLGLGEIGTRVGKILAALG   65 (181)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCC----C-------------CTTCEEEEESCSTHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCC----c-------------ccCceEEEeccccccccceeeeeccc
Confidence            578999999999999999999999999997443221    1             77899999999999999999999999


Q ss_pred             CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHH
Q 018213           95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  174 (359)
Q Consensus        95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  174 (359)
                      ++|.+|||++...      ......++++++++||+|++++|.+++|++++  +++.+..|++++++||++|+..+++++
T Consensus        66 ~~v~~~d~~~~~~------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li--~~~~l~~mk~~ailIN~~RG~ivd~~a  137 (181)
T d1qp8a1          66 AQVRGFSRTPKEG------PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVFVNVGRAEVLDRDG  137 (181)
T ss_dssp             CEEEEECSSCCCS------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEEEECSCGGGBCHHH
T ss_pred             ccccccccccccc------ceeeeechhhhhhccchhhccccccccccccc--ccceeeeccccceEEeccccccccchh
Confidence            9999999986532      23345689999999999999999999999999  899999999999999999999999999


Q ss_pred             HHHHHHhcCCeeecCCCCCCC
Q 018213          175 INGHIKATGASFLEAPVSGSK  195 (359)
Q Consensus       175 l~~~l~~~~~~~~~~~~~~~~  195 (359)
                      |.++++++.+.....+++..+
T Consensus       138 L~~aL~~~~i~~aalDV~~~e  158 (181)
T d1qp8a1         138 VLRILKERPQFIFASDVWWGR  158 (181)
T ss_dssp             HHHHHHHCTTCEEEESCCTTT
T ss_pred             hhhhcccCcEEEEEEecCCCC
Confidence            999999988877777776443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.92  E-value=2.2e-27  Score=199.36  Aligned_cols=163  Identities=15%  Similarity=0.088  Sum_probs=140.4

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      |+||++++++|++.|+++.+.+.++.++|.+.+..+   +.             +.+++|||||+|+||+.+|+.+..+|
T Consensus         3 aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g---~e-------------l~gk~vgIiG~G~IG~~va~~l~~fg   66 (197)
T d1j4aa1           3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG---RE-------------VRDQVVGVVGTGHIGQVFMQIMEGFG   66 (197)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCB---CC-------------GGGSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcC---cc-------------ccCCeEEEecccccchhHHHhHhhhc
Confidence            678999999999999999999998889887543221   22             77899999999999999999999999


Q ss_pred             CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHH
Q 018213           95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  174 (359)
Q Consensus        95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  174 (359)
                      ++|.+||+.....  ....+. ...++++++++||+|++|+|.+++|++++  +++.+..|++++++||+|||..+++++
T Consensus        67 ~~V~~~d~~~~~~--~~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~a  141 (197)
T d1j4aa1          67 AKVITYDIFRNPE--LEKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVIVNVSRGPLVDTDA  141 (197)
T ss_dssp             CEEEEECSSCCHH--HHHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred             ccccccCcccccc--ccccee-eeccccccccccccccccCCccccccccc--cHHHHhhhCCccEEEecCchhhhhhHH
Confidence            9999999876432  223333 45689999999999999999999999999  889999999999999999999999999


Q ss_pred             HHHHHHhcCCeeecCCCCCCCccc
Q 018213          175 INGHIKATGASFLEAPVSGSKKPA  198 (359)
Q Consensus       175 l~~~l~~~~~~~~~~~~~~~~~~~  198 (359)
                      |.++|+++.+.....+++..++..
T Consensus       142 L~~aL~~~~i~~a~lDV~~~Ep~~  165 (197)
T d1j4aa1         142 VIRGLDSGKIFGYAMDVYEGEVGI  165 (197)
T ss_dssp             HHHHHHHTSEEEEEESCCTTCTTT
T ss_pred             HHHHHhcccchheeeeccccCCcc
Confidence            999999998888888888777543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.92  E-value=1.5e-27  Score=201.41  Aligned_cols=161  Identities=13%  Similarity=0.094  Sum_probs=138.6

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      |++|++++++|++.|++..+.+.++.|.|.....+ .. +             ++.+++|||||+|+||+.+|+.+..+|
T Consensus         4 aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~-~~-~-------------~l~~ktvgIiG~G~IG~~va~~l~~fg   68 (199)
T d1dxya1           4 AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IG-K-------------ELGQQTVGVMGTGHIGQVAIKLFKGFG   68 (199)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCC-CC-C-------------CGGGSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCc-cc-c-------------cccceeeeeeecccccccccccccccc
Confidence            78999999999999999999999999999633211 11 1             277899999999999999999999999


Q ss_pred             CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHH
Q 018213           95 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  174 (359)
Q Consensus        95 ~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  174 (359)
                      ++|++||+++.....   ... ...+++++++.||+|++++|.+++|++++  +++.+..|++++++||++||..+++++
T Consensus        69 ~~v~~~d~~~~~~~~---~~~-~~~~l~~l~~~~D~v~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~vvde~a  142 (199)
T d1dxya1          69 AKVIAYDPYPMKGDH---PDF-DYVSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAIVINTARPNLIDTQA  142 (199)
T ss_dssp             CEEEEECSSCCSSCC---TTC-EECCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred             eeeeccCCccchhhh---cch-hHHHHHHHHHhcccceeeecccccccccc--cHHHhhccCCceEEEecccHhhhhhHH
Confidence            999999997654221   122 34589999999999999999999999999  889999999999999999999999999


Q ss_pred             HHHHHHhcCCeeecCCCCCCCc
Q 018213          175 INGHIKATGASFLEAPVSGSKK  196 (359)
Q Consensus       175 l~~~l~~~~~~~~~~~~~~~~~  196 (359)
                      |.++|+++.+.....+++..++
T Consensus       143 L~~aL~~g~i~ga~lDV~~~EP  164 (199)
T d1dxya1         143 MLSNLKSGKLAGVGIDTYEYET  164 (199)
T ss_dssp             HHHHHHTTSEEEEEESSCTTHH
T ss_pred             HHHHHhcCCcceEeccccCCCC
Confidence            9999999988888888887665

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.3e-26  Score=192.80  Aligned_cols=162  Identities=12%  Similarity=0.033  Sum_probs=134.4

Q ss_pred             cCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHC
Q 018213           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA   93 (359)
Q Consensus        14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~   93 (359)
                      .|++|++++++|++.|+++.+.+.++.+.|.+......                ++.+++|||||+|+||+.+|+.+..+
T Consensus         3 ~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~----------------~l~~~~vgiiG~G~IG~~va~~l~~f   66 (188)
T d1sc6a1           3 RSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF----------------EARGKKLGIIGYGHIGTQLGILAESL   66 (188)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC----------------CSTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccc----------------cccceEEEEeecccchhhhhhhcccc
Confidence            36889999999999999999999999999974432211                17889999999999999999999999


Q ss_pred             CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHH
Q 018213           94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK  173 (359)
Q Consensus        94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~  173 (359)
                      |++|.+||+......    .......+++++++.||+|++|+|.+++|++++  +++.++.|++++++||++||..++++
T Consensus        67 g~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~lvde~  140 (188)
T d1sc6a1          67 GMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLINASRGTVVDIP  140 (188)
T ss_dssp             TCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             cceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhc--cHHHHhhCCCCCEEEEcCcHHhhhhH
Confidence            999999998754322    124455689999999999999999999999999  89999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeecCCCCCCCcc
Q 018213          174 LINGHIKATGASFLEAPVSGSKKP  197 (359)
Q Consensus       174 ~l~~~l~~~~~~~~~~~~~~~~~~  197 (359)
                      +|.++|+++.+.....+++..+|.
T Consensus       141 aL~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1         141 ALADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             HHHHHHHTTSEEEEEEEC------
T ss_pred             HHHHHHHcCCceEEEEecCCCCCC
Confidence            999999998888777777776654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.90  E-value=2.2e-24  Score=179.17  Aligned_cols=154  Identities=18%  Similarity=0.225  Sum_probs=137.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--------cCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------YQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+|||||+|+||..+|++|.+.|++|++|||++++.+.+.+.+..        ...++.+.+..+|++++++|.++.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            569999999999999999999999999999999998888776432        233445667789999999999999999


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++   .++.+.+++|+++||+|+..+.+...+.+.+.+.++.|+++|+.|++..+..+. .++++|+++.+++++++|+.
T Consensus        83 v~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~  158 (176)
T d2pgda2          83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG  158 (176)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred             HH---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHH
Confidence            88   788899999999999999999999999999999999999999999998888887 67889999999999999999


Q ss_pred             hCCCeE
Q 018213          224 MGKSRF  229 (359)
Q Consensus       224 lg~~~~  229 (359)
                      ++.++.
T Consensus       159 ~~~kv~  164 (176)
T d2pgda2         159 IAAKVG  164 (176)
T ss_dssp             HSCBCT
T ss_pred             HhcccC
Confidence            998763

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.6e-23  Score=169.17  Aligned_cols=155  Identities=28%  Similarity=0.427  Sum_probs=136.4

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccccc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA  152 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~  152 (359)
                      ||||||+|+||..+|++|.+.|+.+ +|+|++++...+.+.+...... .+.+.++|++++++|.+.++....   ..+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~---~~l~   76 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVA---EALY   76 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhh---cccc
Confidence            5999999999999999999988865 6788777666655544444434 455678999999999998888887   7888


Q ss_pred             ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeC
Q 018213          153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG  232 (359)
Q Consensus       153 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g  232 (359)
                      ..++++.++||+++..|....++.+.+++.++.|+++|++|++..+..+++.++++|+++.+++++++| .++.+++++|
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 4899999987


Q ss_pred             c
Q 018213          233 D  233 (359)
Q Consensus       233 ~  233 (359)
                      +
T Consensus       156 P  156 (156)
T d2cvza2         156 P  156 (156)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.86  E-value=1.3e-22  Score=168.73  Aligned_cols=161  Identities=20%  Similarity=0.321  Sum_probs=139.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--------cCCCHHH---HhhcCCEEEEeeCChhH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------YQPSPDE---VAASCDVTFAMLADPES  140 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------~~~~~~~---~~~~aDivi~~~p~~~~  140 (359)
                      |||||||+|+||..+|++|.+.|++|++|||++++.+.+.+.+..        ...+.++   .+..++.++++++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            789999999999999999999999999999999998888765432        2233333   34578899999988888


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL  220 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l  220 (359)
                      +..++   ......++++++++|+++..+.+...+.+.+...++.|+++|+++++..+..+. .++++|+++.+++++++
T Consensus        82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pi  157 (178)
T d1pgja2          82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI  157 (178)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred             hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHH
Confidence            88888   677788999999999999999999999999999999999999999988888887 67899999999999999


Q ss_pred             HHHhCCCeE----EeCccCh
Q 018213          221 LDIMGKSRF----YLGDVGN  236 (359)
Q Consensus       221 l~~lg~~~~----~~g~~~~  236 (359)
                      |+.++.++.    ++|..|.
T Consensus       158 l~~~~~~~~~~~~~~g~~G~  177 (178)
T d1pgja2         158 VEAAAAKADDGRPCVTMNGS  177 (178)
T ss_dssp             HHHHSCBCTTSCBSCCCCCS
T ss_pred             HHHHhccccCCCCccCCCCC
Confidence            999998877    7777663

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.3e-20  Score=148.37  Aligned_cols=125  Identities=25%  Similarity=0.441  Sum_probs=121.8

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHH
Q 018213          233 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR  312 (359)
Q Consensus       233 ~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  312 (359)
                      +.|++...|+++|.+....+.+++|++.++++.|++++++.+++..+.+.|++++.+.|.+..++|.|+|+++.+.||++
T Consensus         1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~   80 (133)
T d1vpda1           1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA   80 (133)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ++.+++++.|+|+|+.+.+.++|+.+.+.|+++.|+++++++|++
T Consensus        81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~  125 (133)
T d1vpda1          81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK  125 (133)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999976

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.84  E-value=2.5e-20  Score=152.86  Aligned_cols=152  Identities=15%  Similarity=0.244  Sum_probs=117.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC-ccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      |||||||+|.||+.+|+.|++.|++|++|||+++..+...+.+. ....+..+.++++|+||+++| +..+..++   ++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp-~~~~~~vl---~~   76 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP-IQLILPTL---EK   76 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC-HHHHHHHH---HH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc-Hhhhhhhh---hh
Confidence            78999999999999999999999999999999888887777764 233344567899999999997 67899999   88


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCcc--------ccCCceEEEe---cCCHHHHHHHH
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP--------AEDGQLIFLA---AGDKSLYNTVA  218 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~---~g~~~~~~~v~  218 (359)
                      +.+.++++.+|+++++........+.+...    .++ .+|+++.+..        ...+...+++   +++++.++.++
T Consensus        77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~----~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~  152 (165)
T d2f1ka2          77 LIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLR  152 (165)
T ss_dssp             HGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHH
T ss_pred             hhhhcccccceeeccccchHHHHHHHHhhc----ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHH
Confidence            889999999999999888766655544332    222 2444443211        1234444444   46899999999


Q ss_pred             HHHHHhCCCeEEe
Q 018213          219 PLLDIMGKSRFYL  231 (359)
Q Consensus       219 ~ll~~lg~~~~~~  231 (359)
                      ++++.+|.+++.+
T Consensus       153 ~l~~~lG~~v~~c  165 (165)
T d2f1ka2         153 SVLEPLGVKIYLC  165 (165)
T ss_dssp             HHHGGGTCEEEEC
T ss_pred             HHHHHhCCEEEeC
Confidence            9999999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.82  E-value=1.2e-20  Score=152.58  Aligned_cols=150  Identities=21%  Similarity=0.286  Sum_probs=119.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  151 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~  151 (359)
                      |||||||+|+||+++|+.|.+.|++|++|++++.+.......+.....+++|+++++|+|++|+|.+ +...++   ...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~-~~~~~~---~~~   76 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPG-VALGAA---RRA   76 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGG-GHHHHH---HHH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCc-hHHHHH---Hhh
Confidence            7899999999999999999999999999998877666555555666778999999999999999854 555555   333


Q ss_pred             cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      ...  .+.++|++++..|.....+.+.+++.  .|+++|++++++....+..+++.+++.+.+++    |+.+|.++.++
T Consensus        77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~g~~i~~~  148 (152)
T d1i36a2          77 GRH--VRGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRYGLNIEVR  148 (152)
T ss_dssp             HTT--CCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGGTCEEEEC
T ss_pred             ccc--CCceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHcCCeeeEc
Confidence            333  36799999999999999998887644  58999999988777777776655556554443    67889988888


Q ss_pred             Cc
Q 018213          232 GD  233 (359)
Q Consensus       232 g~  233 (359)
                      |+
T Consensus       149 G~  150 (152)
T d1i36a2         149 GR  150 (152)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=1.7e-19  Score=141.84  Aligned_cols=124  Identities=26%  Similarity=0.385  Sum_probs=118.9

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-ccccCCCCCCcchhHHHHHHH
Q 018213          234 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKDLR  312 (359)
Q Consensus       234 ~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~  312 (359)
                      .|+++..|+++|.+.+..+.+++|++.++++.|++++.+.++++.+.+.|+.+..+.| .+..++|.++|+++.+.||++
T Consensus         1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~   80 (132)
T d2cvza1           1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG   80 (132)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence            4789999999999999999999999999999999999999999999999999988877 578899999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      ++.+++++.|+|+|+.+.+.++|+.+.+.|++++|+++++++|++
T Consensus        81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~  125 (132)
T d2cvza1          81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER  125 (132)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=6e-19  Score=139.02  Aligned_cols=126  Identities=24%  Similarity=0.335  Sum_probs=117.5

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcc-------cccccCCCCCCcchh
Q 018213          233 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLK  305 (359)
Q Consensus       233 ~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~  305 (359)
                      +.|++...|+++|.+.+..+.+++|++.++++.|++++.+.++++.+++.|++++.+.       +.+..+++.++|++.
T Consensus         1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   80 (134)
T d3cuma1           1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ   80 (134)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence            3588999999999999999999999999999999999999999999999999887654       346677889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          306 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       306 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      .+.||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|+.|++++++.|+.-
T Consensus        81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~  133 (134)
T d3cuma1          81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT  133 (134)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.76  E-value=7.5e-18  Score=135.84  Aligned_cols=142  Identities=14%  Similarity=0.194  Sum_probs=118.7

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ...+||+||| +|.||+.+|+.|.+.||+|.+||+++..             ..++.+.++|++++++| ...+..++  
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-------------~~~~~~~~~~~v~~~~~-~~~~~~v~--   70 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVP-INLTLETI--   70 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSC-GGGHHHHH--
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-------------ccchhhhhccccccccc-hhhheeee--
Confidence            5568999999 9999999999999999999999997653             23456789999999997 67888888  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEe-cCCHHHHHHHHHHHHHhC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLA-AGDKSLYNTVAPLLDIMG  225 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~~~~~v~~ll~~lg  225 (359)
                       .++.+.++++++++|+++.++...+.+.+.+   ...|+. +|++|++.....+..++++ +++++.++++.++|+.+|
T Consensus        71 -~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~G  146 (152)
T d2pv7a2          71 -ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWG  146 (152)
T ss_dssp             -HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTT
T ss_pred             -ecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhC
Confidence             8888999999999999999988777776544   235664 8999998877777666665 568889999999999999


Q ss_pred             CCeEE
Q 018213          226 KSRFY  230 (359)
Q Consensus       226 ~~~~~  230 (359)
                      .+++.
T Consensus       147 a~v~e  151 (152)
T d2pv7a2         147 AKIYQ  151 (152)
T ss_dssp             CEEEE
T ss_pred             CEEEe
Confidence            98875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=3.1e-19  Score=144.31  Aligned_cols=150  Identities=13%  Similarity=0.053  Sum_probs=110.2

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS  153 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~  153 (359)
                      |||||+|+||+++++.|...++.+.+|+|++++.+.+.+.+...+.+++++++++|+|++|+| +.++..++   +++. 
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~-d~~i~~v~---~~l~-   76 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP-DRYIKTVA---NHLN-   76 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC-TTTHHHHH---TTTC-
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc-chhhhHHH---hhhc-
Confidence            799999999999999998755555799999999999888776677788899999999999997 56788877   4442 


Q ss_pred             cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       154 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                        .++.++|+++.+.+...   .+.....+++++..+..+...........+.+++++++++.++++++.+|.+++++++
T Consensus        77 --~~~~ivi~~s~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2          77 --LGDAVLVHCSGFLSSEI---FKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             --CSSCCEEECCSSSCGGG---GCSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             --ccceeeeecccchhhhh---hhhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence              47899999998876532   1222233555555555555544445556677889999999999999999999998865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.73  E-value=5.2e-17  Score=133.45  Aligned_cols=153  Identities=18%  Similarity=0.275  Sum_probs=119.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCc--cCCCHHHH-hhcCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEV-AASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~-~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++|+|||+|.||.++|+.|.+.|+  +|++||++++..+...+.+..  ...+.++. ..++|+|++|+| +..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhh-
Confidence            579999999999999999999986  789999999888877777652  23344433 347999999997 77888888 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHH
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLY  214 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~  214 (359)
                        +++.+.++++.+++|+++......+.+.+.+..   .|+. +|+.|.+..        ...+...+++.   .+++.+
T Consensus        80 --~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~  154 (171)
T d2g5ca2          80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL  154 (171)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred             --hhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHH
Confidence              788888999999999999988888788776654   3554 777766432        12355555554   378899


Q ss_pred             HHHHHHHHHhCCCeEEe
Q 018213          215 NTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       215 ~~v~~ll~~lg~~~~~~  231 (359)
                      +.++++++.+|.+++.+
T Consensus       155 ~~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         155 KLVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             HHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHcCCEEEeC
Confidence            99999999999987653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.67  E-value=1.6e-16  Score=127.75  Aligned_cols=142  Identities=14%  Similarity=0.225  Sum_probs=106.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  150 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~  150 (359)
                      |||||||+|+||+++++.|.+.|++|++|+|++++.+.+.+ .|+..+.+.+++++++|+|++|++ +..+++++   + 
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl---~-   75 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---K-   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH---T-
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh---h-
Confidence            78999999999999999999999999999999888877754 488888999999999999999994 77777776   3 


Q ss_pred             ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHHHHHHhCC
Q 018213          151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll~~lg~  226 (359)
                         .++++.++|++..+..  .+.+.+.+.. +..++. .|....  ....+ ...++.+   +++..+.++++|+.+|.
T Consensus        76 ---~l~~~~~iis~~agi~--~~~l~~~l~~-~~~ivr~mPN~~~--~v~~g-~~~~~~~~~~~~~~~~~v~~l~~~~G~  146 (152)
T d2ahra2          76 ---PLHFKQPIISMAAGIS--LQRLATFVGQ-DLPLLRIMPNMNA--QILQS-STALTGNALVSQELQARVRDLTDSFGS  146 (152)
T ss_dssp             ---TSCCCSCEEECCTTCC--HHHHHHHHCT-TSCEEEEECCGGG--GGTCE-EEEEEECTTCCHHHHHHHHHHHHTTEE
T ss_pred             ---hcccceeEeccccccc--HHHHHhhhcc-cccchhhccchhh--hcCcc-ceEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence               4577889998766543  3456666633 233443 342211  11222 2333333   68899999999999996


Q ss_pred             C
Q 018213          227 S  227 (359)
Q Consensus       227 ~  227 (359)
                      .
T Consensus       147 ~  147 (152)
T d2ahra2         147 T  147 (152)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.55  E-value=3.2e-15  Score=120.10  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |||||||+|+||+++++.|.+.| ++|.+|||++++.+.+.+. |+...++.++ +.++|+||++++ |.++..++   +
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~   75 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence            78999999999999999988776 8999999999888887664 7777777665 568999999995 88888888   5


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCC
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGK  226 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~lg~  226 (359)
                      ++.   +.+.++|++..+.+.  +.+.+.+.. ...++. .|..  +.....+...+..+.  +++..+.++++|+.+|.
T Consensus        76 ~l~---~~~~~viS~~ag~~~--~~l~~~l~~-~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~  147 (152)
T d1yqga2          76 NIR---TNGALVLSVAAGLSV--GTLSRYLGG-TRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL  147 (152)
T ss_dssp             TCC---CTTCEEEECCTTCCH--HHHHHHTTS-CCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred             HHh---hcccEEeecccCCCH--HHHHHHhCc-CcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence            553   357889877666543  456666532 222332 3322  122223333333332  58888999999999996


Q ss_pred             Ce
Q 018213          227 SR  228 (359)
Q Consensus       227 ~~  228 (359)
                      ..
T Consensus       148 ~~  149 (152)
T d1yqga2         148 TV  149 (152)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=119.77  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC------------------CCccCCCHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL------------------GAKYQPSPD  122 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~------------------g~~~~~~~~  122 (359)
                      ++|+|||+|.||+.+|..++..|++|++||++++..+...           +.                  .+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            7899999999999999999999999999999986543221           11                  123466788


Q ss_pred             HHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCc
Q 018213          123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQ  202 (359)
Q Consensus       123 ~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  202 (359)
                      +.+.++|+|+.|+|...+++.-+|  .++-+.+++++++...+++.+..  .+.+.+... -++++.+.+.++.   ..+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~ig~HffnP~~---~~~  156 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT--SIANATTRQ-DRFAGLHFFNPVP---VMK  156 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCG-GGEEEEEECSSTT---TCC
T ss_pred             hhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCcccccc--hhhhhccCH-hHEEeeccccccC---ccc
Confidence            889999999999999988887664  67777788998888665555543  455554332 2333333222221   123


Q ss_pred             eEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          203 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       203 ~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      ++-++.+   +++.++.+.++++.+|+.++.+.+
T Consensus       157 lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         157 LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            4555554   799999999999999999998866

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.53  E-value=2.5e-15  Score=124.83  Aligned_cols=151  Identities=11%  Similarity=0.139  Sum_probs=114.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------CCccCCCHHHHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~  134 (359)
                      +.++||+|||+|.||+++|..|+..|++|++|+|+++..+.+.+.              .+....+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            555789999999999999999999999999999998877766542              234566889999999999999


Q ss_pred             eCChhHHHHHhcccccccc-----cCCCCCEEEeccCCCh-HH----HHHHHHHHHhcCCeeecCCCCCCCccccCCceE
Q 018213          135 LADPESAMDVACGKHGAAS-----GMGPGKGYVDVSTVDG-DT----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLI  204 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~-----~l~~~~~vi~~s~~~~-~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  204 (359)
                      +| +..++.++   +++.+     ..+++..+++++-|-. ..    .+.+.+.+....+.++.+|.+..+........+
T Consensus        85 vP-s~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~  160 (189)
T d1n1ea2          85 IP-TQFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCV  160 (189)
T ss_dssp             SC-HHHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEE
T ss_pred             Cc-HHHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEE
Confidence            98 77888877   55443     2356777888876642 21    233334444445677888888777666666677


Q ss_pred             EEecCCHHHHHHHHHHHHH
Q 018213          205 FLAAGDKSLYNTVAPLLDI  223 (359)
Q Consensus       205 ~~~~g~~~~~~~v~~ll~~  223 (359)
                      ++.+.+.+..+.++++|+.
T Consensus       161 viAs~~~~~a~~i~~lfst  179 (189)
T d1n1ea2         161 SIASADINVARRLQRIMST  179 (189)
T ss_dssp             EEECSSHHHHHHHHHHHSC
T ss_pred             EEEeCCHHHHHHHHHHhCC
Confidence            7777799999999999974

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=3.3e-13  Score=113.29  Aligned_cols=159  Identities=16%  Similarity=0.074  Sum_probs=111.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  131 (359)
                      |||+|||+|.+|..+|..|+..|++|++||.++++++.+.+.                    ......+.++++.++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            789999999999999999999999999999998877665432                    123466888989999999


Q ss_pred             EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--------CCeeecCCCCCC
Q 018213          132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--------GASFLEAPVSGS  194 (359)
Q Consensus       132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~  194 (359)
                      ++|+|.|.         ....++..-........++.++|..|+..|...+.+...+-+.        .+.+..+|-+-.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99998642         2223330002334456688999999999999888776654321        345556776544


Q ss_pred             Cccc----cCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213          195 KKPA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       195 ~~~~----~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +...    ...+..++.+.+++..+.+.++++.+...++.
T Consensus       161 ~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred             ccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence            3221    12222333345788899999999998766553

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=3.6e-14  Score=117.02  Aligned_cols=154  Identities=11%  Similarity=0.113  Sum_probs=108.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc--chhHHHhCC-------------CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS--KCDPLISLG-------------AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g-------------~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |+|+|||+|.||.++|..|+..|++|.+|.|..+  ..+.+.+.+             +....+++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            7899999999999999999999999999998543  233443321             1235678899999999999997


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChH-------HHHHHHHHHHh--cCCeeecCCCCCCCccccCCceEEEe
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-------TSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                       +..++.++   +++.+.++++ .++.++.+...       ..+.+.+....  ..+.++.+|.+..+.........++.
T Consensus        81 -s~~~~~~~---~~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via  155 (180)
T d1txga2          81 -TDGVLPVM---SRILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS  155 (180)
T ss_dssp             -GGGHHHHH---HHHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             -hhhhHHHH---Hhhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE
Confidence             78899998   7787877665 44445444311       12222222211  13456778888777666666677777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCeEE
Q 018213          208 AGDKSLYNTVAPLLDIMGKSRFY  230 (359)
Q Consensus       208 ~g~~~~~~~v~~ll~~lg~~~~~  230 (359)
                      +.+.+..+.++++|+.-.++++.
T Consensus       156 s~~~~~a~~i~~~f~~~~frvy~  178 (180)
T d1txga2         156 SPSESSANKMKEIFETEYFGVEV  178 (180)
T ss_dssp             CSCHHHHHHHHHHHCBTTEEEEE
T ss_pred             cCCHHHHHHHHHHHCCCCEEEEe
Confidence            78889999999999765555543

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=1.7e-14  Score=122.98  Aligned_cols=156  Identities=10%  Similarity=0.058  Sum_probs=125.2

Q ss_pred             CeEEEEcCCh--hhHHHHH------HHHHCCCcEEEEcCCccch-hHHH-------------------------------
Q 018213           72 GRIGFLGMGI--MGTPMAQ------NLLKAGCDVTVWNRTKSKC-DPLI-------------------------------  111 (359)
Q Consensus        72 ~~igiiG~G~--iG~~ia~------~l~~~g~~V~~~d~~~~~~-~~~~-------------------------------  111 (359)
                      .++.++|.|-  ||..+++      .|++.|+.|++.|-++++. +.+.                               
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4477888885  8888888      6889999999998886542 1111                               


Q ss_pred             -----hCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCee
Q 018213          112 -----SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       112 -----~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                           +.|+..++++.|+++++|+||+|+|.++.+..++   +++.+.++++++++|+|+.++.....+.+.+.++++.+
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence                 0145667899999999999999999888899999   89999999999999999999999999999999899999


Q ss_pred             ecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213          187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  231 (359)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~  231 (359)
                      ++.+.++.+ .......+....++++.++++.++|+.+|++++.+
T Consensus       198 i~~hp~a~p-e~~g~~li~~~~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         198 TSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             EECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             ECCCccCcC-ccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence            984444333 23334555555679999999999999999988764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.42  E-value=9.9e-14  Score=114.85  Aligned_cols=153  Identities=14%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-------------CccCCCHHHHhhc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAAS  127 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~  127 (359)
                      ++|+|||+|.||+.+|..++..|++|++||++++..+...+           .+             +....+.+ .+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-cccc
Confidence            67999999999999999999999999999999876443221           11             12233333 4679


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      +|+|+.++|...+.+.-+|  +++.+..++++++...+++.+..  .+.+.+... -++++.+.+.++..   .+++-++
T Consensus        84 adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p-~r~~g~Hf~nP~~~---~~lVEiv  155 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALKRP-ENFVGMHFFNPVHM---MPLVEVI  155 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCG-GGEEEEECCSSTTT---CCEEEEE
T ss_pred             cceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccHH--HHHHhccCc-hheEeeccccCccc---CCeEEEC
Confidence            9999999999988887664  77777888999988666655543  455555432 34555444433322   2344444


Q ss_pred             cC---CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213          208 AG---DKSLYNTVAPLLDIMGKSRFYLGD  233 (359)
Q Consensus       208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~  233 (359)
                      .+   +++.++.+..+++.+|+.++.+.+
T Consensus       156 ~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  184 (186)
T d1wdka3         156 RGEKSSDLAVATTVAYAKKMGKNPIVVND  184 (186)
T ss_dssp             ECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            43   789999999999999999998865

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.41  E-value=5.3e-13  Score=110.17  Aligned_cols=106  Identities=15%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC---------------CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +||+|||+|+||.++|..|+..|++|.+|+|++++.+.+.+.+               .....++.|.++++|+|++++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~   81 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   81 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence            7899999999999999999999999999999988877766533               1235678999999999999996


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT  182 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~  182 (359)
                       +..++.++   +++.+.++++++|+..+ +.......+.+.+...
T Consensus        82 -~~~~~~~~---~~i~~~l~~~~~iv~~~-g~~~~~~~~~~~~~~~  122 (184)
T d1bg6a2          82 -AIHHASIA---ANIASYISEGQLIILNP-GATGGALEFRKILREN  122 (184)
T ss_dssp             -GGGHHHHH---HHHGGGCCTTCEEEESS-CCSSHHHHHHHHHHHT
T ss_pred             -hhHHHHHH---HHhhhccCCCCEEEEeC-CCCccHHHHHHHHHHh
Confidence             77888888   88889999999887544 4333344455556554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.7e-12  Score=98.56  Aligned_cols=103  Identities=15%  Similarity=0.061  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.+++++|+|+|.+|+.+|+.++.+|++|++|+++|-+.-+..-.|.... ++++++..+|+++.++.    .++++  +
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTG----n~~vI--~   94 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTG----CIDII--L   94 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSS----CSCSB--C
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCC----Cccch--h
Confidence            78899999999999999999999999999999999865444444466554 89999999999988874    23455  5


Q ss_pred             ccccccCCCCCEEEeccCC-ChHHHHHHHHH
Q 018213          149 HGAASGMGPGKGYVDVSTV-DGDTSKLINGH  178 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~  178 (359)
                      .+.++.||+|+++.|++.- .-++.+.|.+.
T Consensus        95 ~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          95 GRHFEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             HHHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             HHHHHhccCCeEEEEeccccceecHHHHhhc
Confidence            6778899999999998654 44555566553

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.6e-11  Score=99.39  Aligned_cols=94  Identities=19%  Similarity=0.223  Sum_probs=75.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC-------ccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      |||+|||+|.||+.+|..|++.|++|++++|++++.......+.       ....+..+.+..+|+|+++++ +.+++.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH
Confidence            78999999999999999999999999999998876543322211       122344566789999999995 8899999


Q ss_pred             hcccccccccCCCCCEEEeccCCCh
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      +   +.+.+.+.+++.|+.+.++..
T Consensus        80 ~---~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          80 V---KSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             H---HHHHTTSCTTSCEEEECSSSC
T ss_pred             H---HhhccccCcccEEeeccCccc
Confidence            8   888888889999998877643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=4.9e-10  Score=93.08  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=77.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC------------------CCccCCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aDivi~  133 (359)
                      |||+|||+|.+|..+|..++ .|++|++||.++++++.+...                  ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            78999999999999998775 699999999998877765531                  11223355566778999999


Q ss_pred             eeCChhHHHH------HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC
Q 018213          134 MLADPESAMD------VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG  183 (359)
Q Consensus       134 ~~p~~~~~~~------~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~  183 (359)
                      ++|.+..-..      .+....+.....+++.+++..|+..|...+.+...+.+..
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~  135 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDR  135 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSC
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhh
Confidence            9987632111      1100011112345778899999999999988877765544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.94  E-value=9.7e-10  Score=86.36  Aligned_cols=95  Identities=15%  Similarity=0.085  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      +.++++.|+|+|.+|+.+|++++..|.+|++++++|-+.-+..-.|.++ .+++|+++.+|++|.++....    ++  +
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~----vI--~   93 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVD----VI--K   93 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSS----SB--C
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCc----cc--c
Confidence            7889999999999999999999999999999999985544433457766 489999999999999996432    44  4


Q ss_pred             ccccccCCCCCEEEeccCCChH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      .+.+..||+|+++.|.+.....
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTS
T ss_pred             HHHHHHhhCCeEEEeccccchh
Confidence            5667899999999999776543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.83  E-value=6.4e-09  Score=82.04  Aligned_cols=90  Identities=24%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++++|+|||+|.-|.+-|..|+..|.+|++--|...+ .+...+.|.++. +.+|+++.+|+|.+.+|+ +.-..+.  
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD-~~q~~vy--   89 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLY--   89 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHH--
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecch-HHHHHHH--
Confidence            66799999999999999999999999999988775443 344556688765 899999999999999984 4444555  


Q ss_pred             cccccccCCCCCEEE
Q 018213          148 KHGAASGMGPGKGYV  162 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi  162 (359)
                      ++++.+.|++|+.+.
T Consensus        90 ~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          90 KEEIEPNLKKGATLA  104 (182)
T ss_dssp             HHHTGGGCCTTCEEE
T ss_pred             HHhhhhhcCCCcEEE
Confidence            357889999998776

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=4.7e-09  Score=86.56  Aligned_cols=174  Identities=13%  Similarity=0.139  Sum_probs=91.5

Q ss_pred             CeEEEE-cCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-------CCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igii-G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      |||+|| |+|.||+++|+.|++.|++|.+++|++++.+.+.+.       ......+........+......+.......
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchH
Confidence            789999 899999999999999999999999999887766542       111222344445556666666643322222


Q ss_pred             Hhcc--cccccccCCCCCEEEec-----cCCChHHHHHHHHHHHhcC----CeeecCCCCCCCccccCCceEEEecCCHH
Q 018213          144 VACG--KHGAASGMGPGKGYVDV-----STVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAGDKS  212 (359)
Q Consensus       144 ~~~~--~~~~~~~l~~~~~vi~~-----s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  212 (359)
                      ....  ...............+.     ..............+....    +.....+....+. ........+.+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~  159 (212)
T d1jaya_          81 ARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLD-EKFDWDVPVCGDDDE  159 (212)
T ss_dssp             HHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTT-CCCCEEEEEEESCHH
T ss_pred             HHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCcc-cccCccceEEeCCHH
Confidence            1100  00000000011111110     0111112223333333321    1112222222222 223344455666776


Q ss_pred             HHHHHHH-HHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213          213 LYNTVAP-LLDIMGKSRFYLGDVGNGAAMKLVVNM  246 (359)
Q Consensus       213 ~~~~v~~-ll~~lg~~~~~~g~~~~~~~~kl~~n~  246 (359)
                      ....+.+ +.+..|.++++.|....+...+.+...
T Consensus       160 a~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~l  194 (212)
T d1jaya_         160 SKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL  194 (212)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred             HHHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHHH
Confidence            6666555 556679999888887766666655443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=4.1e-08  Score=78.63  Aligned_cols=107  Identities=20%  Similarity=0.236  Sum_probs=77.5

Q ss_pred             CeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +||||||+|.||.. ....+... ++++. ++|+++++.+.+.+ .++..+++.++++++.|+|++++|...+.+.+.  
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~--   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence            68999999999986 56667654 56654 78999888776654 478888899999999999999998665555443  


Q ss_pred             cccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCe
Q 018213          148 KHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  185 (359)
                           ..++.|..|+-.  -.....+...+.+..++.+..
T Consensus        80 -----~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -----ccccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence                 234556554432  234567778888888776654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.71  E-value=6.8e-09  Score=82.76  Aligned_cols=70  Identities=27%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCc--cCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +++++|.|||+|.||+.+++.|...|. ++++++|+.++.+.+.+. +..  ..+++.+.+.++|+||.|++.+
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~   95 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP   95 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence            778999999999999999999999997 699999998887766553 443  3457778888999999999644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.64  E-value=3.5e-08  Score=79.93  Aligned_cols=110  Identities=21%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC---------ccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---------KYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~---------~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      .++|.|||+|.||+.+|+.|.+.|++|+++||+.++.+.+.+..-         ......++.+...|+++.++|... .
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~-~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF-H   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG-H
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh-h
Confidence            478999999999999999999999999999999998888766421         111234556778899999887443 3


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....      ....+.+..+++.+...+ ....+.+.....+..++.
T Consensus        81 ~~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  120 (182)
T d1e5qa1          81 ATVI------KSAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN  120 (182)
T ss_dssp             HHHH------HHHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred             hHHH------HHHHhhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence            3332      123445677888765544 344666666665555543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.60  E-value=1.7e-08  Score=79.89  Aligned_cols=97  Identities=21%  Similarity=0.262  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC---Ccc----CCCHHHHhhcCCEEEEeeCC-hhH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---AKY----QPSPDEVAASCDVTFAMLAD-PES  140 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---~~~----~~~~~~~~~~aDivi~~~p~-~~~  140 (359)
                      ..+.+|.|||.|..|..-++.+...|.+|+++|.++++.+++....   +..    ...+++.++++|+||-++-- ...
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            5668999999999999999999999999999999988877665431   221    12356778899999988732 334


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCC
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      ...++  .++....||+|+++||++--
T Consensus       110 aP~lI--t~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         110 APILV--PASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             CCCCB--CHHHHTTSCTTCEEEETTCT
T ss_pred             cCeee--cHHHHhhcCCCcEEEEeecC
Confidence            45566  57788999999999999643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.58  E-value=6.5e-08  Score=79.71  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++||+|.|+|++|..+|+.|.+.|.+|+++|.+++........|.... +.++++. +|||++-|-- .    +.+  
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~-~----~~I--   96 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM-G----GVI--   96 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC-S----CCB--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc-c----ccc--
Confidence            78899999999999999999999999999999999888777777777666 5566665 7999987653 2    222  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      +++..+.++- .+|+..+++ |...++..+.|.++|+.+++
T Consensus        97 ~~~~a~~i~a-k~i~e~AN~-p~~~~~~~~~L~~rgI~~iP  135 (201)
T d1c1da1          97 TTEVARTLDC-SVVAGAANN-VIADEAASDILHARGILYAP  135 (201)
T ss_dssp             CHHHHHHCCC-SEECCSCTT-CBCSHHHHHHHHHTTCEECC
T ss_pred             cHHHHhhhhh-heeeccCCC-CcchhhHHHHhcccceEEEe
Confidence            2333344432 455544444 44444566788889987764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=5e-08  Score=75.29  Aligned_cols=74  Identities=12%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHH-hhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEV-AASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~-~~~aDivi~~~p~~~~~~~  143 (359)
                      |++.|+|+|.+|+.+|+.|.+.|++|+++|.++++.+.+.+.+...       ...++++ +.++|.+++++|.+.....
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            4588999999999999999999999999999999888777665322       1223333 5789999999986555444


Q ss_pred             Hh
Q 018213          144 VA  145 (359)
Q Consensus       144 ~~  145 (359)
                      ++
T Consensus        81 ~~   82 (134)
T d2hmva1          81 LT   82 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.56  E-value=8.9e-08  Score=76.70  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC-----------------------------
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-----------------------------  119 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-----------------------------  119 (359)
                      ..+-+|.|||.|..|..-++.....|.+|.++|.++++.+++.+.+.+...                             
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            455789999999999999999999999999999999988888776543321                             


Q ss_pred             CHHHHhhcCCEEEEeeCC-hhHHHHHhcccccccccCCCCCEEEeccC
Q 018213          120 SPDEVAASCDVTFAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       120 ~~~~~~~~aDivi~~~p~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+.+.++++|+||.++-- ......++  +++..+.||+|++|||++-
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEee
Confidence            122446789999987622 22334455  5778899999999999954

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.55  E-value=7.7e-08  Score=77.48  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++||||||+|+||+.+++.+.+. ++++. +++++++...   ..+.....+.+++..+.|+|++|+|...+...+.  
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~--   76 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQA--   76 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH--
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHHH--
Confidence            457899999999999999999875 46655 6788765433   2244556677778889999999998665544433  


Q ss_pred             cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCe
Q 018213          148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS  185 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~  185 (359)
                           ..+..|..+|.+.-.   .+...+.+.++.+..+..
T Consensus        77 -----~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~  112 (170)
T d1f06a1          77 -----PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV  112 (170)
T ss_dssp             -----HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             -----HHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCce
Confidence                 456788877754322   233445565665555543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=2.3e-07  Score=75.58  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=77.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhC-C----CccCCCHHHHhh--cCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-G----AKYQPSPDEVAA--SCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~--~aDivi~~~p~~~~~~  142 (359)
                      +||||||+|.||+..++.+... +++|. ++|+++++.+.+.+. +    ...+++.+++++  +.|+|++++|...+.+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            6799999999999999999876 56766 679988776665442 3    346789999985  4799999998666655


Q ss_pred             HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .+.       ..++.|..++-.  ......+.+.+.+..+++++.+
T Consensus        82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            544       345566655433  2235667778888877766544

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.51  E-value=2.2e-07  Score=75.72  Aligned_cols=91  Identities=19%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CCC-CeEEEEcCChhhHHHHHHHHHC------CCcEEEEcCCc-cchhHHHhCCCcc----CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELP-GRIGFLGMGIMGTPMAQNLLKA------GCDVTVWNRTK-SKCDPLISLGAKY----QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~-~~igiiG~G~iG~~ia~~l~~~------g~~V~~~d~~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~~p  136 (359)
                      .++ ++|+|||+|.-|.+-|..|+..      |.+|++--|.. ...+...+.|...    +.+.+|+++++|+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            456 7899999999999999999984      46677655533 3445566677652    3378899999999999998


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEe
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                       ++.-.++.   +++.+.|++|+.+.-
T Consensus       121 -De~Q~~vy---~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 -DSAQADNY---EKVFSHMKPNSILGL  143 (226)
T ss_dssp             -HHHHHHHH---HHHHHHSCTTCEEEE
T ss_pred             -hHHHHHHH---HHHHHhcCCCceeee
Confidence             44445566   578899999998763

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=4.9e-07  Score=73.38  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHCC--CcEE-EEcCCccchhHHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhHH
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKAG--CDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESA  141 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~g--~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~~p~~~~~  141 (359)
                      ++.||||||+|.+|+. .+..+...+  ++|. ++|+++++.+.+.+. +. ..+++.+|+++  +.|+|++++|...+.
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~   81 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL   81 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc
Confidence            3478999999999987 577777654  4555 789998877766543 43 45789999987  478999999855554


Q ss_pred             HHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCe
Q 018213          142 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  185 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  185 (359)
                      +.+.       ..++.|..|+..  -.....+..++.+..++.+..
T Consensus        82 ~~~~-------~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          82 PFIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cccc-------cccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            4443       234456555432  233566777888887776644

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.43  E-value=3.7e-07  Score=73.12  Aligned_cols=108  Identities=12%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             CeEEEEcCChhhHH-HHHHHHHC-CCcEEEEcCCccchhHHHhC-CC-ccCCCHHHHhh-cCCEEEEeeCChhHHHHHhc
Q 018213           72 GRIGFLGMGIMGTP-MAQNLLKA-GCDVTVWNRTKSKCDPLISL-GA-KYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        72 ~~igiiG~G~iG~~-ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~  146 (359)
                      +||||||+|.+|+. ....+... +.++.++|+++++.+.+.+. +. ..+.+.+++++ +.|+|++++|...+.+.+. 
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~-   80 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   80 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence            68999999999976 56777665 46888999998887776553 43 35677788875 5699999998665555444 


Q ss_pred             ccccccccCCCCC-EEEec-cCCChHHHHHHHHHHHhcCCee
Q 018213          147 GKHGAASGMGPGK-GYVDV-STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       147 ~~~~~~~~l~~~~-~vi~~-s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                            ..++.|. +++.- -.....+...+.+..++.+..+
T Consensus        81 ------~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          81 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ------cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence                  2334454 44432 2335667778888887776543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.40  E-value=7.8e-07  Score=68.20  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc----CCCHHHH----hhcCCEEEEeeCChhHHH
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY----QPSPDEV----AASCDVTFAMLADPESAM  142 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~----~~~~~~~----~~~aDivi~~~p~~~~~~  142 (359)
                      |+|.|+|+|.+|+.+++.|.+.|++|++.|.++++.+.+.+. +...    ..+.+-+    ++++|.++.+++.+ +..
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d-~~N   79 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE-EVN   79 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH-HHH
Confidence            789999999999999999999999999999999988877653 4433    1222222    46789999988654 333


Q ss_pred             HHhcccccccccCCCCCEEE
Q 018213          143 DVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi  162 (359)
                      -++   ......+.+..++.
T Consensus        80 ~~~---~~~~k~~~~~~iI~   96 (132)
T d1lssa_          80 LMS---SLLAKSYGINKTIA   96 (132)
T ss_dssp             HHH---HHHHHHTTCCCEEE
T ss_pred             HHH---HHHHHHcCCceEEE
Confidence            333   33334455665654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.35  E-value=7.4e-07  Score=69.70  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----h------CCCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      ..++||+|||+|.+|..+|..+...|.  ++.++|+++++.+...    +      ..........+.+++||+|+++..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            556899999999999999999988775  7999999876533221    1      122233334466789999999774


Q ss_pred             C
Q 018213          137 D  137 (359)
Q Consensus       137 ~  137 (359)
                      .
T Consensus        84 ~   84 (148)
T d1ldna1          84 A   84 (148)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.34  E-value=4.2e-07  Score=70.88  Aligned_cols=68  Identities=12%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHH----h----C--CCccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S----L--GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .+.|||+|||+|.+|..+|..|+..|  .+|.++|+++++.+...    .    .  ......+.++ +++||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEecc
Confidence            45689999999999999999999877  48999999876543221    1    1  1122335554 589999999874


Q ss_pred             C
Q 018213          137 D  137 (359)
Q Consensus       137 ~  137 (359)
                      .
T Consensus        82 ~   82 (146)
T d1ez4a1          82 A   82 (146)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.28  E-value=2.2e-06  Score=67.35  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh--------CC----CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~~~  135 (359)
                      .+.+||+|||+|.+|+.+|..+...++ ++.++|.++++.+....        .+    .....+.++.++++|+|+++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            456899999999999999998888775 89999998865443221        11    122446678889999999988


Q ss_pred             C
Q 018213          136 A  136 (359)
Q Consensus       136 p  136 (359)
                      .
T Consensus        85 g   85 (154)
T d1pzga1          85 G   85 (154)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.26  E-value=1.2e-06  Score=73.40  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CC-----ccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-----KYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~-----~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      .+.-+|||||+|.||+. ++..+... +++|. ++|+++++.+.+.+. ++     ..+.|.++++.  +.|+|++++|.
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence            34468999999999974 56666554 56766 789998887766543 43     34678999886  47899999986


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      ..+.+.++       ..++.|..|+..  -...+.+...+.+..++.+..+
T Consensus       111 ~~H~~~~~-------~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1         111 SLHAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhhHHH-------HhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            65555444       344566655543  2346677788888877766544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.5e-06  Score=68.30  Aligned_cols=109  Identities=26%  Similarity=0.250  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----C-CccCCCHHH-HhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G-AKYQPSPDE-VAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~~~~~~~-~~~~aDivi~~~p~~~~~~  142 (359)
                      .++++|.|+|+|..+++++..|...|.+|++++|+.++.+.+.+.    + +... +.++ ...++|+||.|+|....-.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~~~~   94 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGISGD   94 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCcccC
Confidence            677999999999999999999999999999999999887766542    1 1222 2222 2357899999998764321


Q ss_pred             HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                       ..   ..-...++++.+++|+.-.+..+  .+.+..++.|.
T Consensus        95 -~~---~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~  130 (170)
T d1nyta1          95 -IP---AIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGS  130 (170)
T ss_dssp             -CC---CCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTC
T ss_pred             -CC---CCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCC
Confidence             11   11234577899999996555433  35556666654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=1.7e-06  Score=66.91  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC---------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL---------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||+|.+|..+|..+...+  .++.++|+++++.+.....         ......+..+.+++||+|+++..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecc
Confidence            78999999999999999988776  4899999987654422110         12222233455789999999873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.4e-06  Score=62.43  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .++++|.|+|+|..|.++|+.|.+.|++|+++|.+..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            6779999999999999999999999999999998654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.13  E-value=3.4e-06  Score=65.53  Aligned_cols=65  Identities=23%  Similarity=0.393  Sum_probs=47.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----h----CC--Cc-cCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S----LG--AK-YQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~----~g--~~-~~~~~~~~~~~aDivi~~~p~  137 (359)
                      +||+|||+|.+|..+|..|...|.  ++.++|+++++.+...    +    .+  .. ...+. +.+++||+|+++...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEeccc
Confidence            689999999999999999988774  8999999877543221    1    11  11 22333 457899999998653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.12  E-value=3.7e-06  Score=65.13  Aligned_cols=64  Identities=14%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHh----------CCCcc-CCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS----------LGAKY-QPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~----------~g~~~-~~~~~~~~~~aDivi~~~  135 (359)
                      |||+|||+|.+|..++..+...|  .++.++|+++++.+....          ...+. ..+..+.++++|+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence            68999999999999999999887  489999998875442211          11222 123455678999999986

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.12  E-value=4.9e-06  Score=65.46  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCChhhHH-HHHHHHHCC-CcEE-EEcCCccch--hHHHhCCCccCC-CHHHHh-----hcCCEEEEeeCCh
Q 018213           70 LPGRIGFLGMGIMGTP-MAQNLLKAG-CDVT-VWNRTKSKC--DPLISLGAKYQP-SPDEVA-----ASCDVTFAMLADP  138 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~-ia~~l~~~g-~~V~-~~d~~~~~~--~~~~~~g~~~~~-~~~~~~-----~~aDivi~~~p~~  138 (359)
                      ++.||||||+|.+|+. +.+.+..+. .++. +++|+++..  ....+.|+.... +.++++     .+.|+|++++|..
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence            3478999999999986 567776654 3554 568876532  234455665543 344443     3579999999866


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+..+..     .....+.|.++||.|.
T Consensus        83 ~h~~~~~-----~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          83 AHVQNEA-----LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHH-----HHHHHCTTCEEEECST
T ss_pred             hHHHhHH-----HHHHHHcCCEEEEccc
Confidence            6666543     2345689999999976

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=5.1e-06  Score=67.22  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh--------CCCc----cCC---CHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAK----YQP---SPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~----~~~---~~~~~~~~aDivi  132 (359)
                      +++++|.|+|+|..|++++..|...|. ++++++|++++.+.+..        ....    ...   ++.+.+.++|+||
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiI   95 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT   95 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceec
Confidence            777999999999999999999999987 68899999876654321        0111    111   2345567899999


Q ss_pred             EeeCChhHHH--HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          133 AMLADPESAM--DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       133 ~~~p~~~~~~--~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .|+|......  ..+   ..-...++++.+++|+.-.+.. + .+.+..++.|..+++
T Consensus        96 N~Tp~G~~~~~~~~~---~~~~~~~~~~~~v~Di~Y~p~~-T-~ll~~a~~~g~~~i~  148 (182)
T d1vi2a1          96 NGTKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHM-T-KLLQQAQQAGCKTID  148 (182)
T ss_dssp             ECSSTTSTTSCSCCS---CCCGGGSCTTCEEEECCCSSSS-C-HHHHHHHTTTCEEEC
T ss_pred             cccCCccccccchhh---hhHHHhhhcchhhHHhhcCccc-c-HHHHHHHHCcCeEec
Confidence            9998543211  111   1113457889999999644333 2 455666666766655

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.09  E-value=5.1e-06  Score=64.23  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=44.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh---CC------CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~---~g------~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +||+|||+|.+|..+|..+...+.  ++.++|+++++.+....   ..      ........+.+++||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence            579999999999999999998875  89999998876433221   11      1122223455789999999853

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=1.9e-06  Score=68.87  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhH--HHHHh
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~--~~~~~  145 (359)
                      ++++|.|+|+|..|++++..|...|. +|.+++|++++.+.+.+. +........  ..++|+||.|+|....  ....-
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~   93 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD   93 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCcccccccc
Confidence            45789999999999999999999996 799999999887776543 333333222  2578999999985311  10000


Q ss_pred             cccccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                         -.+ ...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus        94 ---l~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~  132 (167)
T d1npya1          94 ---LAFPKAFIDNASVAFDVVAMPVET--PFIRYAQARGKQTIS  132 (167)
T ss_dssp             ---CSSCHHHHHHCSEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             ---ccccHhhcCCcceEEEEeeccCCC--HHHHHHHHCCCeEEE
Confidence               001 12245778999985554433  366666777766554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.08  E-value=4.6e-06  Score=65.66  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC----C---CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL----G---AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g---~~~~~~~~~~~~~aDivi~~~  135 (359)
                      ....||+|||+|++|..+|..+...|.  ++.++|++++..+...    ..    +   .....+ .+.+++||+|+++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEec
Confidence            445799999999999999999999986  8999999876543221    11    1   112234 35578999999976


Q ss_pred             C
Q 018213          136 A  136 (359)
Q Consensus       136 p  136 (359)
                      .
T Consensus        97 g   97 (160)
T d1i0za1          97 G   97 (160)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.8e-06  Score=66.85  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHhC----C---CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL----G---AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~----g---~~~~~~~~~~~~~aDivi~~~  135 (359)
                      ++..||+|||+|++|..+|..|...|.  ++.++|++++..+.    +.+.    +   .....+. +.+++||+|+++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEec
Confidence            556789999999999999999998885  79999998765432    2211    1   1123344 4458999999987


Q ss_pred             CC
Q 018213          136 AD  137 (359)
Q Consensus       136 p~  137 (359)
                      ..
T Consensus        96 g~   97 (159)
T d2ldxa1          96 GA   97 (159)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.05  E-value=1.4e-05  Score=59.40  Aligned_cols=104  Identities=22%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             CeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           72 GRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        72 ~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++|+|||+    |..|..+.+.|...|++|+.++++.+..     .|...+.++.|+-...|++++++| +..+.+++  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l--   73 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA--   73 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeC-HHHHHHHH--
Confidence            56999994    7899999999999999999888765443     367888899998888899999997 77888888  


Q ss_pred             cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                       ++..+ +....+++..+.    ..+++.+.+++.|+.+++.
T Consensus        74 -~~~~~-~g~k~v~~~~g~----~~~~~~~~a~~~gi~vigp  109 (116)
T d1y81a1          74 -KEAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVEYSFG  109 (116)
T ss_dssp             -HHHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCEEECS
T ss_pred             -HHHHh-cCCceEEeccch----hhHHHHHHHHHcCCEEEcC
Confidence             55543 334456664332    2345778888889988763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.03  E-value=9.3e-06  Score=60.13  Aligned_cols=90  Identities=17%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhC-CCcc---CCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISL-GAKY---QPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~-g~~~---~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      +++++|.|||.|.+|..-++.|.++|.+|+++++..... ..+.+. ++..   ..+. +.+.++++|+.++... .+..
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~-~dl~~~~lv~~at~d~-~~n~   87 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE-TLLDSCWLAIAATDDD-TVNQ   87 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG-GGGTTCSEEEECCSCH-HHHH
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH-HHhCCCcEEeecCCCH-HHHH
Confidence            788999999999999999999999999999998765432 222222 2221   1122 3456788888887543 4433


Q ss_pred             HhcccccccccCCCCCEEEeccC
Q 018213          144 VACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .+      ....++..++||+..
T Consensus        88 ~i------~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          88 RV------SDAAESRRIFCNVVD  104 (113)
T ss_dssp             HH------HHHHHHTTCEEEETT
T ss_pred             HH------HHHHHHcCCEEEeCC
Confidence            32      233445567787654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.9e-06  Score=71.10  Aligned_cols=68  Identities=24%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      |.++||.|+| .|.+|+.+++.|.+.|++|+++.|++++.......+++.       .++++++++++|+|+.++.
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g   76 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence            3568999999 599999999999999999999999987755443333322       2244566788898888774

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.00  E-value=6.5e-06  Score=68.62  Aligned_cols=110  Identities=13%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +.+++|.|-|+|++|..+|+.|.+.|..|++.|.++...+.+.. .|.... +.++++ .+|||++-|.- .    ..+ 
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-~----~~I-  109 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-G----AVL-  109 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-S----CCB-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-c----ccc-
Confidence            78899999999999999999999999999999998877766554 355555 455554 47999998773 2    223 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                       +++..+.++- .+|+..++..+.+. +..+.|.++|+.+++
T Consensus       110 -~~~~~~~l~a-k~Ive~ANn~~t~~-ea~~~L~~rGI~~iP  148 (230)
T d1leha1         110 -NDFTIPQLKA-KVIAGSADNQLKDP-RHGKYLHELGIVYAP  148 (230)
T ss_dssp             -STTHHHHCCC-SEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred             -ChHHhhccCc-cEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence             2333344432 46666666666554 445778888887765

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.99  E-value=1.6e-05  Score=61.40  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=46.9

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCC---------CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLG---------AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g---------~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .||+|||+ |.+|+.+|..|...|.  ++.++|.++.+.+...-..         .....+..+.+++||+|+++..
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence            37999995 9999999999998885  6899998765433221111         1123455677899999999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=2.2e-06  Score=68.63  Aligned_cols=111  Identities=19%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .++++|.|+|+|..+++++..|...+.+|++++|+.++.+.+.+.     .+......+..+.++|+||.|+|...... 
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~-   94 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG-   94 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC------
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccc-
Confidence            677899999999999999999998888999999999887766542     11222122223568999999998654221 


Q ss_pred             HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      ..   ......++++.+++|..=..|..+ .+.+..++.|.
T Consensus        95 ~~---~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~  131 (171)
T d1p77a1          95 TA---SVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL  131 (171)
T ss_dssp             -----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred             cc---chhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence            11   222334567788888865445433 34455555554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.98  E-value=9.5e-06  Score=63.19  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----------CCCcc-CCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKY-QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g~~~-~~~~~~~~~~aDivi~~~p  136 (359)
                      .||+|||+|.+|..+|..+...+. ++.++|+++++.+....          ..... ..+..+.++++|+|+++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            689999999999999998887774 79999998866443221          11111 1233456689999999875

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=3.9e-06  Score=63.74  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcC----ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           69 ELPGRIGFLGM----GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        69 ~~~~~igiiG~----G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      .+.++|+|||+    |.+|..+.+.|...| .+|+.+++..+.+     .|...+.++.|+-...|++++++| ++.+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~   79 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD   79 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC-hHHhHH
Confidence            45588999997    899999999998766 6899888765443     367888899998888999999997 788888


Q ss_pred             HhcccccccccCCCCCEEEeccCC-------ChHHHHHHHHHHHhcCCeeec
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTV-------DGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~-------~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++   ++..+.=-+ .+++- +.+       ....++++.+..++.|+++++
T Consensus        80 ~~---~~~~~~g~~-~~vi~-s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G  126 (129)
T d2csua1          80 TL---IQCGEKGVK-GVVII-TAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (129)
T ss_dssp             HH---HHHHHHTCC-EEEEC-CCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             HH---HHHHHcCCC-EEEEe-cccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence            88   555443223 33332 332       122345566666777888775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.97  E-value=1.1e-05  Score=62.31  Aligned_cols=64  Identities=11%  Similarity=0.130  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHH----Hh----CC----CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS----LG----AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~----~g----~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||+|++|..+|..+...|.  ++.++|+++++.+..    .+    ..    +....+. +.++++|+|+++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEecc
Confidence            789999999999999999987774  799999987664321    11    11    1223344 56789999999874

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.96  E-value=5e-05  Score=54.30  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc--cchhhhhcccccccCCCCCCcchhHHHHHHH
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI--SAPMYSLKGPSMIESLYPTAFPLKHQQKDLR  312 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  312 (359)
                      ..++..|++.|.+.+.-++.++|...+|++.|+|..++.+++.....  .++.+       ..  ..+|+...-..||+.
T Consensus         2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~-------~~--pG~G~GG~ClpKD~~   72 (98)
T d1mv8a1           2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYY-------MR--PGFAFGGSCLPKDVR   72 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTT-------CS--CCSCCCSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccc-------cC--CcccCCccccchhHH
Confidence            35889999999999999999999999999999999999999875421  11111       10  113455677899999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHH
Q 018213          313 LALGLAESVSQSTPIAAAANELYK  336 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~  336 (359)
                      .+..++++.+++.++++++.+.-+
T Consensus        73 al~~~a~~~~~~~~ll~~~~~~N~   96 (98)
T d1mv8a1          73 ALTYRASQLDVEHPMLGSLMRSNS   96 (98)
T ss_dssp             HHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHh
Confidence            999999999999999998877654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.95  E-value=6e-06  Score=63.81  Aligned_cols=64  Identities=14%  Similarity=0.305  Sum_probs=47.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhH----HHhC----C---CccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL----G---AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~~----g---~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      .||+|||+|++|..+|..+...|.  ++.++|+++++.+.    +.+.    +   +....+. +.+++||+|+++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            579999999999999999998885  89999998765432    1211    1   1223344 45789999999874

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.92  E-value=3.4e-05  Score=59.47  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----------CC--CccCCCHHHHhhcCCEEEEeeCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LG--AKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g--~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      +||+|||+|++|..+|..|+..+. ++.++|.++++.+....          ..  +....+.++ ++++|+|+++...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeec
Confidence            689999999999999999987775 89999998765432211          11  222345555 5899999999843

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.91  E-value=4.9e-06  Score=73.67  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHH-HCCC-cEEEEcCCccchhHHHhC-----CC--ccCCCHHHHhhcCCEEEEeeCChhH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLL-KAGC-DVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPES  140 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~-~~g~-~V~~~d~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivi~~~p~~~~  140 (359)
                      ..++++|||+|..+...++.+. .++. +|.+|+|++++.+.+.+.     |+  ..+++++++++.||||+.|++ +..
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCC
Confidence            3478999999999999998775 4554 799999998877665431     43  458899999999999999885 333


Q ss_pred             HHHHhcccccccccCCCCCEEEeccCCCh
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      ...++  +   ...+++|.+|..++.-.|
T Consensus       206 ~~Pv~--~---~~~l~pG~hI~aiGs~~p  229 (340)
T d1x7da_         206 YATII--T---PDMLEPGMHLNAVGGDCP  229 (340)
T ss_dssp             EEEEE--C---GGGCCTTCEEEECSCCBT
T ss_pred             CCccc--c---hhhcCCCCEEeecccchh
Confidence            44555  2   246889999988866554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=1e-05  Score=64.60  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             CCeEEEEcCChhhHHHHH--HHHHC----CCcEEEEcCCccchhHHHh--------C----CCccCCCHHHHhhcCCEEE
Q 018213           71 PGRIGFLGMGIMGTPMAQ--NLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~--~l~~~----g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi  132 (359)
                      .|||+|||+|.+|...+-  .+...    +.++.++|+++++.+....        .    .+....+.+|.+++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            389999999999976433  23221    4589999999876543221        1    1334568899999999999


Q ss_pred             EeeC
Q 018213          133 AMLA  136 (359)
Q Consensus       133 ~~~p  136 (359)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.85  E-value=6.7e-06  Score=66.17  Aligned_cols=116  Identities=16%  Similarity=0.037  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CC-----ccCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GA-----KYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~-----~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +++++|.|+|+|..+++++..|.+.| +|++++|++++.+.+.+.     ..     ....+++.....+|++|.|+|..
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence            78899999999999999999998777 899999999887765431     11     01224445567899999999854


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      .....-. ...--...++++.+++|+.-.+..+  .+.+..++.|..+++
T Consensus        95 ~~~~~~~-~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~  141 (177)
T d1nvta1          95 MYPNIDV-EPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN  141 (177)
T ss_dssp             CTTCCSS-CCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred             ccccccc-cchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence            3221111 0001123456788999885544433  355666666766654

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=3.7e-06  Score=67.38  Aligned_cols=109  Identities=16%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~  144 (359)
                      ...++|||||+|.||+..++.+....  ..+.+++....+  ...........+.+|++.+  .|+|++++|...+.+.+
T Consensus         5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~   82 (172)
T d1lc0a1           5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYI   82 (172)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhccccccccccc
Confidence            45579999999999999998886532  224444332211  1111112234478898864  58899999866554443


Q ss_pred             hcccccccccCCCCCEE-Eec-cCCChHHHHHHHHHHHhcCCee
Q 018213          145 ACGKHGAASGMGPGKGY-VDV-STVDGDTSKLINGHIKATGASF  186 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~v-i~~-s~~~~~~~~~l~~~l~~~~~~~  186 (359)
                      .       ..++.|..| +.- -.....+.+++.+..++.+..+
T Consensus        83 ~-------~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~  119 (172)
T d1lc0a1          83 R-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (172)
T ss_dssp             H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             c-------cccccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence            3       234445444 332 2346777788888777766543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.3e-05  Score=61.47  Aligned_cols=77  Identities=23%  Similarity=0.328  Sum_probs=62.2

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++.+++|.|||-+. +|+.++..|...|..|+.++...              .++.+.++++|+||.++..+.    ++ 
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~----~i-   94 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FI-   94 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CB-
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCcc----cc-
Confidence            37889999999977 99999999999999999987543              255677899999999997653    33 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                       .   .+++++|+++||++..
T Consensus        95 -~---~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          95 -P---GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             -C---TTTSCTTCEEEECCCE
T ss_pred             -c---ccccCCCcEEEecCce
Confidence             1   2467899999999643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.5e-05  Score=58.99  Aligned_cols=91  Identities=21%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCcc-----CCCHHHHhh--------cCCEEEEee
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAA--------SCDVTFAML  135 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~--------~aDivi~~~  135 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|+..     ..+..+..+        ..|+++.++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            34679999999999999999999998 7999999999888777777643     123333322        479999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +.+...+..       ...++++..++..+..
T Consensus       106 G~~~~~~~a-------~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         106 GAEASIQAG-------IYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCHHHHHHH-------HHHSCTTCEEEECSCC
T ss_pred             CCchhHHHH-------HHHhcCCCEEEEEecC
Confidence            754433333       3567777777776544

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.1e-05  Score=60.45  Aligned_cols=79  Identities=20%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++++++|.|||-+. +|+.++..|...|..|+.++.+..              ++.+.++++|+++.+++.+.    ++ 
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~--------------~l~~~~~~aDivi~a~G~~~----~i-   96 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------HLDEEVNKGDILVVATGQPE----MV-   96 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------SHHHHHTTCSEEEECCCCTT----CB-
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEecccc--------------cHHHHHhhccchhhcccccc----cc-
Confidence            48889999999966 999999999999999999987542              44567789999999997653    23 


Q ss_pred             ccccccccCCCCCEEEeccCCCh
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                        +  ...+++|+++||++....
T Consensus        97 --~--~~~vk~g~iviDvgi~~~  115 (170)
T d1a4ia1          97 --K--GEWIKPGAIVIDCGINYV  115 (170)
T ss_dssp             --C--GGGSCTTCEEEECCCBC-
T ss_pred             --c--cccccCCCeEeccCcccc
Confidence              1  246899999999976543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.80  E-value=2.2e-05  Score=69.22  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh----CCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      ...+++|||+|..+...++.+.. +. -+|.+|+|++++.+.+.+    .++....+.++.+.+||||+.|+|.+   ..
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P  200 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KP  200 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---cc
Confidence            44789999999999999998865 44 379999999887766543    35666667788889999999998743   33


Q ss_pred             HhcccccccccCCCCCEEEeccCCCh
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                      ++  +   .+.+++|++|..++...|
T Consensus       201 ~~--~---~~~l~~G~hv~~iGs~~p  221 (320)
T d1omoa_         201 VV--K---AEWVEEGTHINAIGADGP  221 (320)
T ss_dssp             CB--C---GGGCCTTCEEEECSCCST
T ss_pred             cc--c---hhhcCCCCeEeecCCccc
Confidence            44  1   246899999998876655

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.79  E-value=5.9e-05  Score=57.72  Aligned_cols=105  Identities=19%  Similarity=0.237  Sum_probs=79.3

Q ss_pred             CCCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +.++|+|||+    +..|..+++.|..+|++|+.+++....+     .|...+.++.|+-...|++++++| +..+..++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~   91 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV   91 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeC-HHHHHHHH
Confidence            3478999996    6799999999999999999888765433     367788899998888999999997 77888888


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                         ++... +....+++..+.-.    +.+.+.+++.|+.+++
T Consensus        92 ---~e~~~-~g~k~v~~~~G~~~----ee~~~~a~~~gi~vig  126 (139)
T d2d59a1          92 ---EQAIK-KGAKVVWFQYNTYN----REASKKADEAGLIIVA  126 (139)
T ss_dssp             ---HHHHH-HTCSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred             ---HHHHH-hCCCEEEEeccccC----HHHHHHHHHCCCEEEc
Confidence               55544 33445566444332    3466677788888775

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.76  E-value=0.00011  Score=58.26  Aligned_cols=91  Identities=14%  Similarity=0.065  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-------CCHHHH---h-----hcCCEEEEe
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-------PSPDEV---A-----ASCDVTFAM  134 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~---~-----~~aDivi~~  134 (359)
                      .+.+|.|+|+|.||...++.++..|.+|+++++++++.+..++.|....       .+..+.   +     ...|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            4568999999999999999999999999999999988887777665321       122221   1     237888888


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +..+......+       ..++++..++..+..
T Consensus       106 ~g~~~~~~~a~-------~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         106 SGNEKCITIGI-------NITRTGGTLMLVGMG  131 (170)
T ss_dssp             SCCHHHHHHHH-------HHSCTTCEEEECSCC
T ss_pred             CCChHHHHHHH-------HHHhcCCceEEEecC
Confidence            86443334333       456777777766543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.73  E-value=7.5e-05  Score=59.62  Aligned_cols=67  Identities=10%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEEEE-cCCccchhHH------------------HhCCCccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPL------------------ISLGAKYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~~~-d~~~~~~~~~------------------~~~g~~~~~~~~~~~~~aDiv  131 (359)
                      -||||.|+|+||+.+++.+...+ ++|... |+.+......                  .+.++....++.++..++|+|
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            47999999999999999998764 676654 5544322111                  112344455677777788888


Q ss_pred             EEeeCCh
Q 018213          132 FAMLADP  138 (359)
Q Consensus       132 i~~~p~~  138 (359)
                      +.|+|..
T Consensus        82 iecTG~f   88 (178)
T d1b7go1          82 VDTTPNG   88 (178)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            8888754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=5.3e-05  Score=57.09  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=56.6

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  149 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~  149 (359)
                      |||+|+|+ |+||+.+++.+...|+++.+ +|++..                 +.+.++|+||=.. .|..+...+   +
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l---~   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTV---D   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHH---H
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHH---H
Confidence            68999996 99999999999999998764 444321                 2235789988777 577777776   3


Q ss_pred             cccccCCCCCEEEeccCCChHHHHHHHHHH
Q 018213          150 GAASGMGPGKGYVDVSTVDGDTSKLINGHI  179 (359)
Q Consensus       150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  179 (359)
                      ..   ++.+.-+|-.++|...+.....+.+
T Consensus        60 ~~---~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          60 LC---KKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             HH---HHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             HH---HhcCCCEEEEcCCCCHHHHHHHHHH
Confidence            22   3445666666677544443333333

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=5.9e-05  Score=59.43  Aligned_cols=65  Identities=12%  Similarity=0.065  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhhHHHHHHH--HHC----CCcEEEEcCCccchhHHHhC---------CCccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLGMGIMGTPMAQNL--LKA----GCDVTVWNRTKSKCDPLISL---------GAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l--~~~----g~~V~~~d~~~~~~~~~~~~---------g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+|||.|.+|...+-..  ...    +-++.++|.++++.+...+.         .+....+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            6899999999998777542  222    35899999998775533221         13445678889999999999884

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=3.1e-05  Score=61.48  Aligned_cols=91  Identities=16%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC-C-----C-HHHHhhcCCEEEEeeCChhHHH
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-P-----S-PDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~-----~-~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|+++++++++.+..++.|+..+ .     + .+......|+++.++...... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            4578999999999999999999999999999999999888887776321 1     1 112233579999887532211 


Q ss_pred             HHhcccccccccCCCCCEEEecc
Q 018213          143 DVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                       .+   ...+..++++..++.++
T Consensus       106 -~~---~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 -DF---NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CT---TTGGGGEEEEEEEEECC
T ss_pred             -hH---HHHHHHhhccceEEEec
Confidence             12   23344555655555553

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=3.1e-05  Score=54.30  Aligned_cols=64  Identities=22%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             CeEEEEcCChhhH-HHHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGMGIMGT-PMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~G~iG~-~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~  135 (359)
                      |||-|||-|.+|. ++|+.|...|++|.++|+.+. ..+.+.+.|+.... ...+-+.++|+||..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            7899999999997 789999999999999998753 34567777876532 2223346788887654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=8.7e-05  Score=57.18  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             CeEEEEc-CChhhHHHHHHHH-HC--CCcEEEEcCCccchhH---HHhCCC------ccCCCHHHHhhcCCEEEEeeC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLL-KA--GCDVTVWNRTKSKCDP---LISLGA------KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~-~~--g~~V~~~d~~~~~~~~---~~~~g~------~~~~~~~~~~~~aDivi~~~p  136 (359)
                      |||+||| .|++|+.+|..|. +.  +.++.++|..+.....   +.+...      ....+..+.+++||+|+++.-
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence            7899999 5999999999875 33  4689999986432111   111110      111233456789999999873

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=4.9e-05  Score=58.03  Aligned_cols=107  Identities=17%  Similarity=0.191  Sum_probs=80.6

Q ss_pred             CCCeEEEEcC----ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           70 LPGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        70 ~~~~igiiG~----G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +.++|+|||+    ++.|..+.+.|...|+++..+..++...+ .  .|...+.++.++-...|++++++| +..+.+++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~-i--~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v   87 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE-L--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL   87 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE-E--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce-e--eceecccchhhccCCCceEEEecc-HHHHHHHH
Confidence            3578999997    78999999999999999999987653211 1  367778889888778899999997 77888887


Q ss_pred             cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                         ++... +..+.+++..+.-    .+++.+.+++.|+.++.
T Consensus        88 ---~~~~~-~g~k~i~~q~G~~----~~e~~~~a~~~Gi~vV~  122 (136)
T d1iuka_          88 ---PEVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIPVVA  122 (136)
T ss_dssp             ---HHHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred             ---HHHHh-hCCCeEEEecCcc----CHHHHHHHHHcCCEEEc
Confidence               55543 3455677744322    34577888888988875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=4.5e-05  Score=61.32  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|+|+|.+|...++.++.+|. +|++.++++++.+..++.|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence            45789999999999999999999997 79999999888776665554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=5.7e-05  Score=59.88  Aligned_cols=91  Identities=20%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHH---HhhcCCEEEEeeCChhHHH
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDE---VAASCDVTFAMLADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~---~~~~aDivi~~~p~~~~~~  142 (359)
                      ..+.+|.|+|+|.+|...++.++..|.++++.++++++.+..++.|...+   .+.+.   ..+..|+++.++..+....
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~  108 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD  108 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHH
Confidence            34578999999999999999999999999999998888777666665321   12221   2235899999986544444


Q ss_pred             HHhcccccccccCCCCCEEEeccC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ..+       ..++++..++..+.
T Consensus       109 ~~~-------~~l~~~G~iv~~G~  125 (168)
T d1uufa2         109 DFT-------TLLKRDGTMTLVGA  125 (168)
T ss_dssp             HHH-------TTEEEEEEEEECCC
T ss_pred             HHH-------HHHhcCCEEEEecc
Confidence            444       45566666666653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.58  E-value=0.00017  Score=60.45  Aligned_cols=111  Identities=16%  Similarity=0.102  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCChhh----HHHHHHHHHC--CCcEE-EEcCCccchhHHHh-CC---CccCCCHHHHhhc--CCEEEEee
Q 018213           69 ELPGRIGFLGMGIMG----TPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LG---AKYQPSPDEVAAS--CDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG----~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g---~~~~~~~~~~~~~--aDivi~~~  135 (359)
                      .+++||||||+|.+|    ......+...  +++|. ++|+++++.+.+.+ .+   ...+++.++++.+  -|+|++++
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence            566899999999854    4444556553  46766 68998877666544 23   3456799999864  68899999


Q ss_pred             CChhHHHHHhcccccccc--cCCCCC-EEEecc-CCChHHHHHHHHHHHhc
Q 018213          136 ADPESAMDVACGKHGAAS--GMGPGK-GYVDVS-TVDGDTSKLINGHIKAT  182 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~--~l~~~~-~vi~~s-~~~~~~~~~l~~~l~~~  182 (359)
                      |...+.+.+.   ..+..  ..+.+. +++.-- .....+.+++.+..+++
T Consensus        94 p~~~h~~~~~---~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~  141 (237)
T d2nvwa1          94 KVPEHYEVVK---NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR  141 (237)
T ss_dssp             CHHHHHHHHH---HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CCcchhhHHH---HHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence            8555544443   22211  122333 444432 22455667777766544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.55  E-value=0.00015  Score=57.45  Aligned_cols=70  Identities=11%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC-CcEEE-EcCCccch-hHHHh------------------CCCccCCCHHHHhhcCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTV-WNRTKSKC-DPLIS------------------LGAKYQPSPDEVAASCD  129 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~-~d~~~~~~-~~~~~------------------~g~~~~~~~~~~~~~aD  129 (359)
                      +++|||-|+|+||+.+.+.+...+ .+|.. .++++... ..+..                  .++....+..++..++|
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            368999999999999999987765 56654 44544321 11111                  12333335566777888


Q ss_pred             EEEEeeCChhH
Q 018213          130 VTFAMLADPES  140 (359)
Q Consensus       130 ivi~~~p~~~~  140 (359)
                      +|+.|+|.-..
T Consensus        81 vViEcTG~f~~   91 (171)
T d1cf2o1          81 IVIDCTPEGIG   91 (171)
T ss_dssp             EEEECCSTTHH
T ss_pred             EEEEccCCCCC
Confidence            88888876433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.53  E-value=4.8e-05  Score=61.73  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             ccCCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           67 ADELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        67 ~~~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      .++++++|.|.| .|.||..+++.|++.|++|++++|++++.+.+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            348899999999 599999999999999999999999987766554

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=8e-05  Score=58.55  Aligned_cols=96  Identities=25%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccch-----hH---HHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKC-----DP---LISLGAKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~-----~~---~~~~g~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      +.+||+|+|+ |+||+.+++.+.+. ++++. ++++.....     ..   ....++....+++++.+.+|+||=.. .+
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p   81 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RP   81 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cH
Confidence            3478999995 99999999988765 56654 456533211     00   11224566778888889999998877 57


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      ..+...+   +.   ..+.+.-+|--++|...+.
T Consensus        82 ~~~~~~~---~~---a~~~~~~~ViGTTG~~~~~  109 (162)
T d1diha1          82 EGTLNHL---AF---CRQHGKGMVIGTTGFDEAG  109 (162)
T ss_dssp             HHHHHHH---HH---HHHTTCEEEECCCCCCHHH
T ss_pred             HHHHHHH---HH---HHhccceeEEecCCCcHHH
Confidence            7777766   32   2345566666666654433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=7e-05  Score=53.34  Aligned_cols=67  Identities=22%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCChhh-HHHHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMG-TPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG-~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~  135 (359)
                      .+.++|-|||.|.+| +++|+.|...|++|+++|+... ..+.+.+.|+.... ...+-+.+.|+||..-
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            345889999999999 7789999999999999998633 34556666765422 2223346777776643

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.49  E-value=0.0019  Score=45.79  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHH
Q 018213          236 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLAL  315 (359)
Q Consensus       236 ~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~  315 (359)
                      .++..|++.|.+.+.-++.++|...+|++.|++..++.+.+....-.+       +...  ....++...-+.||...++
T Consensus         3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~-------~~~~--~pg~g~GG~ClpKD~~al~   73 (98)
T d1dlja1           3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIG-------MHYN--NPSFGYGGYSLPKDTKQLL   73 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTC-------SSSC--CCCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccC-------Cccc--cCCCCcccccCcccHHHHH
Confidence            478999999999999999999999999999999999988776432111       1111  1123455677899998874


Q ss_pred             HHHHhcCCCchHHHHHHHHHHH
Q 018213          316 GLAESVSQSTPIAAAANELYKV  337 (359)
Q Consensus       316 ~~a~~~g~~~p~~~~~~~~~~~  337 (359)
                        +.+.+++.++++++.+.-+.
T Consensus        74 --~~~~~~~~~ll~~~~~~N~~   93 (98)
T d1dlja1          74 --ANYNNIPQTLIEAIVSSNNV   93 (98)
T ss_dssp             --HHHTTSSCSHHHHHHHHHHH
T ss_pred             --HHhcCCCcHHHHHHHHHHHh
Confidence              56779999999998877654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.46  E-value=0.00024  Score=56.29  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEE-EEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVT-VWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~-~~d~~~~  105 (359)
                      +||||.|+|+||+.+.+.+.... .+|. +.|.++.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~   38 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD   38 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence            68999999999999999987654 5655 4555543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=0.00013  Score=57.64  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             CeEEEEcCChhhHHHH--HHHHHC-C---CcEEEEcCCccchhHHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGMGIMGTPMA--QNLLKA-G---CDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia--~~l~~~-g---~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~  133 (359)
                      .||+|||.|..|...+  ..+... .   -++.++|.++++.+....        .+    +....+.+|.+++||+|++
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            6799999999987633  333322 2   379999999887653221        12    2346688899999999999


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +.-
T Consensus        84 tag   86 (167)
T d1u8xx1          84 HIR   86 (167)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            983

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.46  E-value=9.6e-05  Score=58.92  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+...+.|+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa   73 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA   73 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc
Confidence            45679999999999999999999996 79999999888776666664

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.45  E-value=0.00018  Score=55.27  Aligned_cols=92  Identities=13%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHC-CC---cEEEEcCCcc--chhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKA-GC---DVTVWNRTKS--KCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~-g~---~V~~~d~~~~--~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      |||||||. |..|+.+.+.|.+. .|   ++..+..+..  +...+... .........+.++++|++++|+| ......
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp-~~~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQG-GSYTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSC-HHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecC-chHHHH
Confidence            68999986 99999999987653 33   4544433221  11111100 01111122345689999999998 555555


Q ss_pred             HhcccccccccCCCCCEEEeccCCC
Q 018213          144 VACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      +.   +.+.+ -..+.+|||.|...
T Consensus        80 ~~---~~l~~-~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          80 VY---PALRQ-AGWKGYWIDAASTL  100 (147)
T ss_dssp             HH---HHHHH-TTCCSEEEESSSTT
T ss_pred             Hh---HHHHH-cCCceEEEeCCccc
Confidence            55   43332 23346799987654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=5.2e-05  Score=58.48  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCC---cEEEEcCCccchhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      +|+|||||+ |..|+.+.+.|.+.+|   ++.....+...-+.+...  .........+...++|++++++| .......
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p-~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAA-AEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSC-HHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCC-cchhhhh
Confidence            488999997 9999999999986554   565543322211111110  01111112234578999999997 4444444


Q ss_pred             hcccccccccCCCCCEEEeccCCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                      .   ..   ...+|..|||.|...
T Consensus        81 ~---~~---~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          81 A---ER---ARAAGCSVIDLSGAL   98 (144)
T ss_dssp             H---HH---HHHTTCEEEETTCTT
T ss_pred             c---cc---cccCCceEEeechhh
Confidence            4   22   345788999987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.43  E-value=9.4e-05  Score=56.98  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccc--hhH----HHhC------CCcc---CCCHHHHhhcCCEEEE
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSK--CDP----LISL------GAKY---QPSPDEVAASCDVTFA  133 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~--~~~----~~~~------g~~~---~~~~~~~~~~aDivi~  133 (359)
                      |||+|||+ |.+|..+|..+...|.  ++.++|++++.  .+.    +.+.      ....   ..+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            68999995 9999999999998884  89999987532  121    1110      1111   1223456789999999


Q ss_pred             ee
Q 018213          134 ML  135 (359)
Q Consensus       134 ~~  135 (359)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00031  Score=53.95  Aligned_cols=92  Identities=12%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-C---cEEEEcCCccchhH--HHhCCCccC-CCHHHHhhcCCEEEEeeCChhHHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-C---DVTVWNRTKSKCDP--LISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM  142 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-~---~V~~~d~~~~~~~~--~~~~g~~~~-~~~~~~~~~aDivi~~~p~~~~~~  142 (359)
                      +++|||||+ |.+|+.+.+.|.... +   ++..+.++......  ......... ....+.+.++|++++|+| ....+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~-~~~s~   79 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQG-GDYTN   79 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSC-HHHHH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecC-chHHH
Confidence            368999997 999999998776542 2   45555543322111  111111111 112234689999999997 44444


Q ss_pred             HHhcccccccccCCCCCEEEeccCC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      .+.   +.+.. -..+.+|||.|+.
T Consensus        80 ~~~---~~~~~-~g~~~~VID~Ss~  100 (146)
T d1t4ba1          80 EIY---PKLRE-SGWQGYWIDAASS  100 (146)
T ss_dssp             HHH---HHHHH-TTCCCEEEECSST
T ss_pred             Hhh---HHHHh-cCCCeecccCCcc
Confidence            444   33322 2334678888765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.32  E-value=0.00016  Score=56.98  Aligned_cols=47  Identities=21%  Similarity=0.226  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+..++.|..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            45789999999999999999999999999999998888777776653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00018  Score=52.54  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      ....||||+|.|.+|+-++....+.|++|.++|++++.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            44578999999999999999999999999999998764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.00012  Score=57.86  Aligned_cols=90  Identities=11%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc------------cCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK------------YQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~aDivi~~~  135 (359)
                      ++++++.|||-++ +|+.+|..|...|..|+.++.+...... ......            ..+.+.+...++|++|.++
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsav  105 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  105 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEEEcc
Confidence            8889999999876 5999999999999999988865321100 000010            0112566677899999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      |.+.-   .+     -.+++++|+++||++..
T Consensus       106 G~p~~---~i-----~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         106 PSENY---KF-----PTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CCTTC---CB-----CTTTSCTTEEEEECSSS
T ss_pred             CCCcc---cc-----ChhhcccCceEeecccc
Confidence            86521   02     12457899999999754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.0006  Score=54.06  Aligned_cols=98  Identities=19%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh-----CC--CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-----LG--AKYQPSPDEVAASCDVTFAMLADPESA  141 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~-----~g--~~~~~~~~~~~~~aDivi~~~p~~~~~  141 (359)
                      ++||||+|+ |..|+.+.+.|..+. +++.....+...-+.+.+     .+  .....+.+++..++|++++++|... .
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s   79 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-S   79 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-H
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-H
Confidence            468999996 999999999998865 355544222221122211     01  1123466777788999999998654 3


Q ss_pred             HHHhcccccccccCCCCCEEEeccCCChHHHHHHHH
Q 018213          142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING  177 (359)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~  177 (359)
                      ...+   ..     .++..|||.|...-.+.....+
T Consensus        80 ~~~~---~~-----~~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 YDLV---RE-----LKGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             HHHH---TT-----CCSCEEEESSSTTTCSSHHHHH
T ss_pred             HHHH---Hh-----hccceEEecCccccccchhhHH
Confidence            4444   22     2578899998876554333333

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.30  E-value=0.00041  Score=58.06  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc--------cchhHHHh----------------CCCccCCCHHH
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK--------SKCDPLIS----------------LGAKYQPSPDE  123 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~--------~~~~~~~~----------------~g~~~~~~~~~  123 (359)
                      ++++++|.|-|+|++|+.+|+.|.+.|.+|+.++-..        -..+.+.+                .+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            3788999999999999999999999999987654221        11111111                13333444455


Q ss_pred             Hhh-cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       124 ~~~-~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++. +|||++-|...     ..+  +++..+.++ -.+|+-.++++. +.++ .+.|.++|+.+++
T Consensus       108 i~~~~~DIliPcA~~-----~~I--~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~~~P  163 (242)
T d1v9la1         108 IFKLDVDIFVPAAIE-----NVI--RGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVVVVP  163 (242)
T ss_dssp             GGGCCCSEEEECSCS-----SCB--CTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCEEEC
T ss_pred             hccccccEEeecchh-----ccc--cHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeEEeC
Confidence            554 79999988732     233  344445554 356666666654 4444 5788888887764

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=0.00044  Score=54.61  Aligned_cols=66  Identities=11%  Similarity=0.033  Sum_probs=44.2

Q ss_pred             CeEEEEcCChhhH--HHHHHHHHCC----CcEEEEcCCccc--hhHHH--------hCCC----ccCCCHHHHhhcCCEE
Q 018213           72 GRIGFLGMGIMGT--PMAQNLLKAG----CDVTVWNRTKSK--CDPLI--------SLGA----KYQPSPDEVAASCDVT  131 (359)
Q Consensus        72 ~~igiiG~G~iG~--~ia~~l~~~g----~~V~~~d~~~~~--~~~~~--------~~g~----~~~~~~~~~~~~aDiv  131 (359)
                      +||.|||+|..|.  .++..+....    -++.++|+++++  .+.+.        +.+.    ...++..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            7899999998774  4445554321    389999998754  22111        1122    2456778889999999


Q ss_pred             EEeeCC
Q 018213          132 FAMLAD  137 (359)
Q Consensus       132 i~~~p~  137 (359)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.27  E-value=0.00023  Score=56.00  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+..++.|..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~   73 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD   73 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence            45789999999999999999999999999999999888877776653

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00069  Score=50.46  Aligned_cols=83  Identities=18%  Similarity=0.057  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHH
Q 018213          252 MATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIA  328 (359)
Q Consensus       252 ~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~  328 (359)
                      ..++.|+..++++.|++  .+...+.+.....   ......++|.++-... ...++..   .+.++++++++|+++|++
T Consensus        38 ~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~---~~~~~~sSM~qD~~~gr~tEid~i---~G~vv~~a~~~gi~tP~~  111 (124)
T d1ks9a1          38 MQICEEVAAVIEREGHHTSAEDLRDYVMQVID---ATAENISSMLQDIRALRHTEIDYI---NGFLLRRARAHGIAVPEN  111 (124)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH---HTTTCCCHHHHHHHTTCCCSGGGT---HHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---ccCCCCChHHHHHHcCCcchHHHH---HHHHHHHHHHhCCCCcHH
Confidence            45677999999999974  4444443332100   0001122333321111 1235555   688999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018213          329 AAANELYKVAKS  340 (359)
Q Consensus       329 ~~~~~~~~~a~~  340 (359)
                      ++++++++...+
T Consensus       112 ~~l~~lik~~E~  123 (124)
T d1ks9a1         112 TRLFEMVKRKES  123 (124)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=0.00013  Score=56.89  Aligned_cols=66  Identities=12%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCC--ccchhHHH---hC-------CCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT--KSKCDPLI---SL-------GAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~--~~~~~~~~---~~-------g~~~~~~~~~~~~~aD  129 (359)
                      +++||+|||+ |.+|+.++..|+..++       ...+++..  .+..+...   ..       .....++..+.++++|
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad   82 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD   82 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence            4579999996 9999999999987553       12333332  22222111   11       2334567788899999


Q ss_pred             EEEEee
Q 018213          130 VTFAML  135 (359)
Q Consensus       130 ivi~~~  135 (359)
                      +|+++.
T Consensus        83 vViita   88 (154)
T d1y7ta1          83 YALLVG   88 (154)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999987

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.19  E-value=0.00032  Score=59.52  Aligned_cols=88  Identities=14%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|++.+|++++.+...+.       +.+.-..+..+.+-+....+++.++  
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~D~s~~~~~~~~~--   74 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREKGLNVEGSVCDLLSRTERDKLM--   74 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeecCCHHHHHHHH--
Confidence            78899999985 8899999999999999999999998765554321       1111111122222334556676776  


Q ss_pred             cccccccC-CCCCEEEeccC
Q 018213          148 KHGAASGM-GPGKGYVDVST  166 (359)
Q Consensus       148 ~~~~~~~l-~~~~~vi~~s~  166 (359)
                       +++.+.. .+-.++||.+.
T Consensus        75 -~~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          75 -QTVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             -HHHHHHTTSCCCEEEECCC
T ss_pred             -HHHHHHhCCCcEEEecccc
Confidence             5555554 34567777643

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.00028  Score=54.89  Aligned_cols=67  Identities=12%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccch--hHHH----hC------CCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSKC--DPLI----SL------GAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~~--~~~~----~~------g~~~~~~~~~~~~~aD  129 (359)
                      +++||+|||+ |++|..+|..|...+.       ++..+|.+....  +.+.    ..      .+....+.++.++++|
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence            3479999995 9999999999975432       466777654322  1111    11      1234567788999999


Q ss_pred             EEEEeeC
Q 018213          130 VTFAMLA  136 (359)
Q Consensus       130 ivi~~~p  136 (359)
                      +|+++..
T Consensus        82 vVVitag   88 (154)
T d5mdha1          82 VAILVGS   88 (154)
T ss_dssp             EEEECCS
T ss_pred             EEEEecc
Confidence            9999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00047  Score=57.91  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|++++|++++.+.+.++       +.+.  ..++..+.  +.+.++...++
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~Dvs~~~~v~~~~   75 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGL--GAKVHTFVVDCSNREDIYSSA   75 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHH
Confidence            77888888887 6699999999999999999999998776655431       1221  23444433  34556667777


Q ss_pred             cccccccccCCCCCEEEeccCC
Q 018213          146 CGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                         +.+.+...+=.++||.+..
T Consensus        76 ---~~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          76 ---KKVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             ---HHHHHHTCCCSEEEECCCC
T ss_pred             ---HHHHHHcCCCceeEeeccc
Confidence               6666666666677777543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.10  E-value=0.00036  Score=52.99  Aligned_cols=91  Identities=23%  Similarity=0.313  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCC----------hhhHHHHHHHHHCCCcEEEEcCCccch-------hHHHh----CCCccCCCHHHHhhc
Q 018213           69 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKC-------DPLIS----LGAKYQPSPDEVAAS  127 (359)
Q Consensus        69 ~~~~~igiiG~G----------~iG~~ia~~l~~~g~~V~~~d~~~~~~-------~~~~~----~g~~~~~~~~~~~~~  127 (359)
                      ...+||+|+|+-          .-...+++.|...|.+|.+||+.-+..       +....    .+...+.++++++.+
T Consensus        11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~   90 (136)
T d1mv8a3          11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVAS   90 (136)
T ss_dssp             SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHH
T ss_pred             cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhh
Confidence            556899999973          557889999999999999999742211       11111    124557899999999


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +|+|+++++.+ +.+.+.       ..+.++.+|+|+-+.
T Consensus        91 ~D~ivi~t~h~-~f~~l~-------~~~~~~~~I~D~~~~  122 (136)
T d1mv8a3          91 SDVLVLGNGDE-LFVDLV-------NKTPSGKKLVDLVGF  122 (136)
T ss_dssp             CSEEEECSCCG-GGHHHH-------HSCCTTCEEEESSSC
T ss_pred             ceEEEEEeCCH-HHHHHH-------HHhcCCCEEEECCCC
Confidence            99999999754 434433       345677899998544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.09  E-value=0.00041  Score=55.07  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCCccC-----CCHHHHhh-----cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivi~~~p~  137 (359)
                      ..+.+|.|+|+|.+|...++.++..|.+ |++.++++++.+..++.|...+     .+..+.++     ..|+|+.|+..
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~  106 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  106 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc
Confidence            3457899999999999999999998875 4567888888777776665311     12222222     25777777754


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEecc
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ....+..+       ..++++..++.++
T Consensus       107 ~~~~~~~~-------~~~~~~G~i~~~G  127 (174)
T d1f8fa2         107 PEILKQGV-------DALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHHHHH-------hcccCceEEEEEe
Confidence            33333333       3445555555543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.07  E-value=0.00044  Score=52.84  Aligned_cols=63  Identities=14%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCC--cEEEEcCCcc--chh----HHHh---C--CCc-cCCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKS--KCD----PLIS---L--GAK-YQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~--~V~~~d~~~~--~~~----~~~~---~--g~~-~~~~~~~~~~~aDivi~~~  135 (359)
                      .||+||| .|.+|+.+|..+...|.  ++.++|....  ..+    .+.+   .  ... ...+.+ .+++||+|+++.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-~~~~aDiVvita   78 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-DTAGSDVVVITA   78 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-GGTTCSEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-HhhhcCEEEEec
Confidence            3799999 69999999999998885  7999997432  111    1111   0  111 123444 458999999976

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.01  E-value=0.0018  Score=51.11  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCC-------CHHHHh-----hcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP-------SPDEVA-----ASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-------~~~~~~-----~~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. .|++.|+++++.+..++.|...+-       ..+...     ...|+++.|+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            345789999999999999999999997 588899999888777777653221       112122     2368888888


Q ss_pred             CChhHHHHHh
Q 018213          136 ADPESAMDVA  145 (359)
Q Consensus       136 p~~~~~~~~~  145 (359)
                      ..+......+
T Consensus       107 G~~~~~~~a~  116 (174)
T d1e3ia2         107 GTAQTLKAAV  116 (174)
T ss_dssp             CCHHHHHHHH
T ss_pred             ccchHHHHHH
Confidence            6544444433

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.00  E-value=0.0012  Score=56.28  Aligned_cols=110  Identities=9%  Similarity=0.072  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEc-CC----------ccchhHHHhCCCcc------CCCHHHHhh-cCCE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN-RT----------KSKCDPLISLGAKY------QPSPDEVAA-SCDV  130 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d-~~----------~~~~~~~~~~g~~~------~~~~~~~~~-~aDi  130 (359)
                      +.+++|.|-|+|++|...|+.|.+.|..|+.++ .+          .+.+..........      .-+.++++. +|||
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI  113 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDI  113 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccE
Confidence            788999999999999999999999999987653 21          11222222211000      012233443 7999


Q ss_pred             EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ++-|.- .    +.+  +.+-.+.++. .+|+-.++++. +.++ .+.|.++|+.+++
T Consensus       114 liPaA~-~----~~I--~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~viP  161 (293)
T d1hwxa1         114 LIPAAS-E----KQL--TKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIMVIP  161 (293)
T ss_dssp             EEECSS-S----SCB--CTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred             Eeeccc-c----ccc--cHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCEEeC
Confidence            987762 2    344  3444455533 46666666554 4433 5778889988775

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.00  E-value=0.0024  Score=50.49  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC------CC-HHHHh-----hcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ------PS-PDEVA-----ASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~------~~-~~~~~-----~~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+      ++ .+++.     ...|+++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            345789999999999999999999995 79999999999887777776432      11 12111     2478888888


Q ss_pred             CChhHHHHHh
Q 018213          136 ADPESAMDVA  145 (359)
Q Consensus       136 p~~~~~~~~~  145 (359)
                      ..+......+
T Consensus       108 g~~~~~~~a~  117 (176)
T d1d1ta2         108 GHLETMIDAL  117 (176)
T ss_dssp             CCHHHHHHHH
T ss_pred             CchHHHHHHH
Confidence            6544444443

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.98  E-value=0.0009  Score=57.40  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhcccccccCCCCCCcchhHH---
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPTAFPLKHQ---  307 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---  307 (359)
                      |+++..||+.|.+.++++++++|++.++++ .|.+.+++.+++.   .+...|++++.....+...+......++..   
T Consensus         1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~   80 (297)
T d2pgda1           1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS   80 (297)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred             CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence            578999999999999999999999999987 5888888888866   456677777755443332221111111110   


Q ss_pred             ---HHHHHHHHHHHHhcCCCchHHHHHH
Q 018213          308 ---QKDLRLALGLAESVSQSTPIAAAAN  332 (359)
Q Consensus       308 ---~kd~~~~~~~a~~~g~~~p~~~~~~  332 (359)
                         -..-.+.+..|-++|+|+|++..+.
T Consensus        81 a~~kGTG~Wt~~~Al~lgvp~p~I~~Av  108 (297)
T d2pgda1          81 AGQKGTGKWTAISALEYGVPVTLIGEAV  108 (297)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHcCCCchHHHHHH
Confidence               0113567888999999999988874

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00034  Score=47.24  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=32.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      |+|||+|.|..|+-++......|++|.++|++++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            68999999999999999999999999999987653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0011  Score=56.03  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|++++|++++.+.+.++       +.+.-....++.+.+  .+.++++.++
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v   80 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMF   80 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHH
Confidence            77788888876 7899999999999999999999998776654331       111111224444333  4566777777


Q ss_pred             cccccccccCCCCCEEEeccC
Q 018213          146 CGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~  166 (359)
                         +.+.+...+=.++||.+.
T Consensus        81 ---~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          81 ---SAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             ---HHHHHHHCCCSEEEECCC
T ss_pred             ---HHHHHhcCCCCEEEeccc
Confidence               555555544456777643

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.0049  Score=46.26  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             eEEEEc-CChhhHHHHHHHHH-CCCcEE-EEcCCccchhHHHhCCCccCCCHHHH-hhcCCEEEEeeCChhHHHHHhccc
Q 018213           73 RIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        73 ~igiiG-~G~iG~~ia~~l~~-~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      ||+|+| .|+||+.+++.+.+ .++++. .+|+..               ++... ..++|+||=.. .|..+...+   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS-~p~~~~~~~---   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFT-HPDVVMGNL---   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECC-CTTTHHHHH---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcc-cHHHHHHHH---
Confidence            699999 59999999998765 457765 455432               11122 24689999877 577777766   


Q ss_pred             ccccccCCCCCEEEeccCCCh-HHHHHHHHHH-HhcCCeeecCCCC
Q 018213          149 HGAASGMGPGKGYVDVSTVDG-DTSKLINGHI-KATGASFLEAPVS  192 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l-~~~~~~~~~~~~~  192 (359)
                      +.   .++.+.-+|--++|-. ...+.+.+.+ ..+.+.++-+|.+
T Consensus        62 ~~---~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNf  104 (135)
T d1yl7a1          62 EF---LIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF  104 (135)
T ss_dssp             HH---HHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             HH---HHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence            32   2345666666666654 4445555533 3445555555554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.87  E-value=0.00071  Score=57.17  Aligned_cols=82  Identities=15%  Similarity=0.230  Sum_probs=52.3

Q ss_pred             CeEEEE-cC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHhcc
Q 018213           72 GRIGFL-GM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG  147 (359)
Q Consensus        72 ~~igii-G~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~~~  147 (359)
                      |||++| |. +.||+++|+.|++.|++|.+.+|++++.+...+.       +.+.  ..+++.+.+  ...++++.++  
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~~--g~~~~~~~~Dv~~~~~v~~~~--   69 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQA--GGHAVAVKVDVSDRDQVFAAV--   69 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence            457666 54 7799999999999999999999998766554321       1111  123433333  3456666776  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +.+.+...+=.++||.+
T Consensus        70 -~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          70 -EQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             -HHHHHHTTCCCEEEECC
T ss_pred             -HHHHHHhCCccEEEecc
Confidence             55555554445677663

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0028  Score=48.72  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh----HHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhH
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD----PLISLGAKYQ----PSPDEV----AASCDVTFAMLADPES  140 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~----~~~~~g~~~~----~~~~~~----~~~aDivi~~~p~~~~  140 (359)
                      .|-|+|+|.+|..+++.|.+.|++|++.+.++++..    .....|+.+.    .+.+-+    +.++|.++++++.+..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            488999999999999999999999999998876432    2222344321    122211    3468999999876544


Q ss_pred             HHH
Q 018213          141 AMD  143 (359)
Q Consensus       141 ~~~  143 (359)
                      ...
T Consensus        85 n~~   87 (153)
T d1id1a_          85 NAF   87 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00099  Score=55.82  Aligned_cols=84  Identities=15%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++-|-|. +.||+++|+.|++.|++|.+++|++++.+.+.+.          +-.++..+..-+.+..+++.++  
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~--   69 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVL--   69 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhh--
Confidence            56677777775 7799999999999999999999988766554331          1112222222234566777777  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.....+=.++||.+
T Consensus        70 -~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          70 -EKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             -HHHHHHTCSCSEEEECC
T ss_pred             -hhhhcccCCcceehhhh
Confidence             55655555545677764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.83  E-value=0.001  Score=56.11  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      +++++++-|.|. +.||.++|+.|++.|++|.+.+|+.++.+...++          +-.++..+..-+...++++.++ 
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~-   70 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE----------LGDAARYQHLDVTIEEDWQRVV-   70 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----------TGGGEEEEECCTTCHHHHHHHH-
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCceEEEEcccCCHHHHHHHH-
Confidence            378888989986 6799999999999999999999988766554432          1112222222233556777776 


Q ss_pred             ccccccccCCCCCEEEecc
Q 018213          147 GKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s  165 (359)
                        +++.+...+=.++||.+
T Consensus        71 --~~~~~~~g~iDilVnnA   87 (254)
T d1hdca_          71 --AYAREEFGSVDGLVNNA   87 (254)
T ss_dssp             --HHHHHHHSCCCEEEECC
T ss_pred             --HHHHHHcCCccEEEecC
Confidence              55555444445667663

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.0012  Score=55.30  Aligned_cols=85  Identities=12%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|++.+|++++.+.+.++          +-..+..+-.-+.+.++++.++  
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~--   71 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE----------LADAARYVHLDVTQPAQWKAAV--   71 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TGGGEEEEECCTTCHHHHHHHH--
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hhCcceEEEeecCCHHHHHHHH--
Confidence            77888888886 7799999999999999999999998766654432          1112222222234566777777  


Q ss_pred             cccccccCCCCCEEEeccC
Q 018213          148 KHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s~  166 (359)
                       +++.+...+=.++||.+.
T Consensus        72 -~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          72 -DTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             -HHHHHHHSCCCEEEECCC
T ss_pred             -HHHHHHhCCCeEEEECCc
Confidence             566555555567777643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00049  Score=53.13  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      +++++|.|||.|.+|..-++.|.+.|.+|+++++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            88899999999999999999999999999999754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.79  E-value=0.0011  Score=55.97  Aligned_cols=85  Identities=12%  Similarity=0.061  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|++.+|++++.++..+.       +.+.  ...+..+.  +.+..+++.++
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~~--g~~~~~~~~Dv~~~~~v~~~~   76 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRSK--GFKVEASVCDLSSRSERQELM   76 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCCceEEEeeCCCHHHHHHHH
Confidence            77888888886 6799999999999999999999988766554321       1111  12222222  23456667776


Q ss_pred             cccccccccCC-CCCEEEecc
Q 018213          146 CGKHGAASGMG-PGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~-~~~~vi~~s  165 (359)
                         +++..... +=.++||.+
T Consensus        77 ---~~~~~~~~~~idilvnnA   94 (259)
T d2ae2a_          77 ---NTVANHFHGKLNILVNNA   94 (259)
T ss_dssp             ---HHHHHHTTTCCCEEEECC
T ss_pred             ---HHHHHHhCCCceEEEECC
Confidence               55545444 345677763

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.79  E-value=0.003  Score=54.16  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---c-cccchhhhhcccccccCCCCCCcchhHH---
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ---G-AISAPMYSLKGPSMIESLYPTAFPLKHQ---  307 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~---~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~---  307 (359)
                      |+++..||+.|.+.++.+++++|++.+++..|.+.+++.+++..   + ...|++.+-....+...+-....-++..   
T Consensus         1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~   80 (300)
T d1pgja1           1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR   80 (300)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred             CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence            57899999999999999999999999999999999888877653   3 3466666544333322221111101110   


Q ss_pred             ---HHHHHHHHHHHHhcCCCchHHHHHH
Q 018213          308 ---QKDLRLALGLAESVSQSTPIAAAAN  332 (359)
Q Consensus       308 ---~kd~~~~~~~a~~~g~~~p~~~~~~  332 (359)
                         -..-.+.+..+-++|+|+|++.+..
T Consensus        81 a~~kGTG~Wt~~~al~~gvp~p~i~~Av  108 (300)
T d1pgja1          81 IGSKGTGLWSAQEALEIGVPAPSLNMAV  108 (300)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence               1113566778889999999987764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.76  E-value=0.00088  Score=56.72  Aligned_cols=87  Identities=13%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~  144 (359)
                      ++++|++-|.|. +.||.++|+.|++.|++|++.+|+.++.++..+.       +.+.. ..++..+.+  .+.++++.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~~-g~~~~~~~~Dv~~~~~v~~~   77 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKEF-GVKTKAYQCDVSNTDIVTKT   77 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHHH-TCCEEEEECCTTCHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHH
Confidence            377888888876 6699999999999999999999998766544321       11111 234444433  355667777


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||.+
T Consensus        78 ~---~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          78 I---QQIDADLGPISGLIANA   95 (260)
T ss_dssp             H---HHHHHHSCSEEEEEECC
T ss_pred             H---HHHHHHhCCCcEecccc
Confidence            7   55555554445677764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0022  Score=50.90  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      .++++|+|||.|..|...|..|+..||+|+++++++.-
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            56689999999999999999999999999999987643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.74  E-value=0.0025  Score=47.56  Aligned_cols=70  Identities=11%  Similarity=0.177  Sum_probs=50.8

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhHHHHHh
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivi~~~p~~~~~~~~~  145 (359)
                      |-|+|+|.+|+.+++.|.  |.+|.+.+.+++..+.+...|+...    .+.+-+    +.+|+.++++.+.+.....+.
T Consensus         3 ivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~   80 (129)
T d2fy8a1           3 VVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCI   80 (129)
T ss_dssp             EEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHHH
Confidence            779999999999999995  5678888999888887777765432    122222    346899999987655444443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.72  E-value=0.0013  Score=55.24  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE
Q 018213           68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW  100 (359)
Q Consensus        68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~  100 (359)
                      +++++||.|-|+|++|..+|+.|.+.|.+|+..
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            378899999999999999999999999988743

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.71  E-value=0.0014  Score=55.92  Aligned_cols=84  Identities=11%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++.|-|. +.||+++|+.|++.|++|.+.+|++++++++.+          +.-.++..+..-+....+++.++  
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~----------~~~~~~~~~~~Dv~~~~~~~~~~--   70 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET----------DHGDNVLGIVGDVRSLEDQKQAA--   70 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HHGGGEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------HcCCCeeEEecccccHHHHHHHH--
Confidence            67888888876 889999999999999999999998776554432          11112222222233455666666  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.+...+=.++||.+
T Consensus        71 -~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          71 -SRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             -HHHHHHHSCCCEEECCC
T ss_pred             -HHHHHHhCCcccccccc
Confidence             55545454445666653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.001  Score=52.48  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHH------hhcCCEEEEeeCChhHHH
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV------AASCDVTFAMLADPESAM  142 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~------~~~aDivi~~~p~~~~~~  142 (359)
                      .+.+|.|.|. |.+|....+.++..|.+|++.++++++.+.+++.|+...-+..+.      ....|+|+-++.  +.+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~~~  104 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVE  104 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TTHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hhHH
Confidence            4578999995 999999999999999999999998888888777776432222211      123677776653  2233


Q ss_pred             HHhcccccccccCCCCCEEEecc
Q 018213          143 DVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ..+       +.++++..++.++
T Consensus       105 ~~~-------~~l~~~G~~v~~G  120 (171)
T d1iz0a2         105 ESL-------GLLAHGGRLVYIG  120 (171)
T ss_dssp             HHH-------TTEEEEEEEEEC-
T ss_pred             HHH-------HHHhcCCcEEEEe
Confidence            332       4455666666553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.68  E-value=0.0048  Score=48.56  Aligned_cols=77  Identities=21%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCC-----C--HHHHhh-----cCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP-----S--PDEVAA-----SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~--~~~~~~-----~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+-     +  .++...     ..|+++.++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~  105 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA  105 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence            345779999999999999999999986 688999999988888877764321     1  222221     368888877


Q ss_pred             CChhHHHHHh
Q 018213          136 ADPESAMDVA  145 (359)
Q Consensus       136 p~~~~~~~~~  145 (359)
                      ..+......+
T Consensus       106 g~~~~~~~~~  115 (174)
T d1p0fa2         106 GRIETMMNAL  115 (174)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCchHHHHHH
Confidence            5444444443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.65  E-value=0.0044  Score=48.84  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=45.9

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHC---CC----cEEEEcCCccc--hhHHH---hC-------CCccCCCHHHHhhcCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKA---GC----DVTVWNRTKSK--CDPLI---SL-------GAKYQPSPDEVAASCD  129 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~---g~----~V~~~d~~~~~--~~~~~---~~-------g~~~~~~~~~~~~~aD  129 (359)
                      +..||.|+|+ |.+|..++..|+..   |.    ++.++|.....  .+...   ..       .....++..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            3458999996 99999999999863   42    45667765432  11111   11       2344668888999999


Q ss_pred             EEEEeeC
Q 018213          130 VTFAMLA  136 (359)
Q Consensus       130 ivi~~~p  136 (359)
                      +|++...
T Consensus       103 vVvi~ag  109 (175)
T d7mdha1         103 WALLIGA  109 (175)
T ss_dssp             EEEECCC
T ss_pred             eEEEeec
Confidence            9999873

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.0022  Score=53.50  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|++.+|+.++.+...+. .           ++..+..-+.+.++++.++  
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-~-----------~~~~~~~Dv~~~~~v~~~~--   68 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-V-----------GAHPVVMDVADPASVERGF--   68 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T-----------TCEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCeEEEEecCCHHHHHHHH--
Confidence            67788888886 6799999999999999999999998766655432 1           1122222334566777777  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.+...+=.++||.+
T Consensus        69 -~~~~~~~g~iDilVnnA   85 (242)
T d1ulsa_          69 -AEALAHLGRLDGVVHYA   85 (242)
T ss_dssp             -HHHHHHHSSCCEEEECC
T ss_pred             -HHHHHhcCCceEEEECC
Confidence             55555554445677663

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.0016  Score=54.84  Aligned_cols=86  Identities=17%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|.+.+|+.++.++..+       .+.+-. ..+++.+.+  .+..+++.++
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~l~~~~-g~~~~~~~~Dv~~~~~v~~~~   74 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ-------KLTEKY-GVETMAFRCDVSNYEEVKKLL   74 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHH-CCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCcEEEEEccCCCHHHHHHHH
Confidence            77788888886 779999999999999999999998776554332       111111 234444433  3456677777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        75 ---~~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          75 ---EAVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHcCCCCEEEECC
Confidence               55555554445677663

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.60  E-value=0.0014  Score=55.52  Aligned_cols=84  Identities=11%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++.|.|. +.||+++|+.|++.|++|.+++|+++..+...+.       +.+  ...++..+.+  ....+++.++
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~   73 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGTV   73 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH
Confidence            67788888886 7799999999999999999999987766544321       111  1224444433  3456677777


Q ss_pred             cccccccccCCCCCEEEec
Q 018213          146 CGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~  164 (359)
                         +++.+...+=.++||.
T Consensus        74 ---~~~~~~~g~iDilVnn   89 (260)
T d1zema1          74 ---DSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             ---HHHHHHHSCCCEEEEC
T ss_pred             ---HHHHHHhCCCCeehhh
Confidence               5555555444566665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.58  E-value=0.0034  Score=52.89  Aligned_cols=87  Identities=13%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|++++.+...+       .+.+...+..++.+.+  .+.++++.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~-------~~~~~~~~~~~~~~~~Dvt~~~~v~~~~   74 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA-------AVLETAPDAEVLTTVADVSDEAQVEAYV   74 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhhCCCCeEEEEeccCCCHHHHHHHH
Confidence            56787878776 679999999999999999999999876554432       1112222345554433  3456777777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        75 ---~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          75 ---TATTERFGRIDGFFNNA   91 (258)
T ss_dssp             ---HHHHHHHSCCSEEEECC
T ss_pred             ---HHHHHHhCCCCEEEECC
Confidence               55555555545777763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.004  Score=51.94  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~  112 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|++++.+.+.+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            78899999886 789999999999999999999999877665543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.56  E-value=0.002  Score=50.71  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC----C-CHHHHhh-----cCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ----P-SPDEVAA-----SCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~----~-~~~~~~~-----~aDivi~~~p~~~  139 (359)
                      +.+|.|+|+|.+|...++.++..|. .|++.++++++.+..++.|...+    . ..++..+     ..|+++.++....
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~  112 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA  112 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence            4679999999999999999988885 67788999888777777665321    1 1222222     2688888885443


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .....+       ..++++..++.++-
T Consensus       113 ~~~~a~-------~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         113 TVDYTP-------YLLGRMGRLIIVGY  132 (172)
T ss_dssp             HHHHGG-------GGEEEEEEEEECCC
T ss_pred             HHHHHH-------HHHhCCCEEEEEeC
Confidence            333333       45666666665543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.55  E-value=0.0013  Score=54.74  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .+.+||.|||.|-.|.+.|..|++.|++|++++|..
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            344789999999999999999999999999999853

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.53  E-value=0.002  Score=54.37  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             eEEEE-c-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHhccc
Q 018213           73 RIGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACGK  148 (359)
Q Consensus        73 ~igii-G-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~~~~  148 (359)
                      ||++| | .+.||.++|+.|++.|++|.+++|++++.+...+.       +.+.  ..++..+.+  ...++++.++   
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~v~~~~---   70 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREA--GVEADGRTCDVRSVPEIEALV---   70 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeecCCHHHHHHHH---
Confidence            46666 5 57899999999999999999999988766554331       1111  123333333  3556777777   


Q ss_pred             ccccccCCCCCEEEecc
Q 018213          149 HGAASGMGPGKGYVDVS  165 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s  165 (359)
                      +.+.+...+=.++||.+
T Consensus        71 ~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          71 AAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             HHHHHHTCSCSEEEECC
T ss_pred             HHHHHHhCCCCEEEecc
Confidence            56655555545777763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0016  Score=48.20  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..|...|.+|+++.+.+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            47899999999999999999999999999998664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0013  Score=55.38  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|.+.+|++++.+...++       +.+.  ..+++.+.+  .+..+.+.++
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~~~~~~   79 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQL--GGQAFACRCDITSEQELSALA   79 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHc--CCcEEEEEccCCCHHHHHHHH
Confidence            67787777775 7899999999999999999999988765554321       1111  123444433  2445666666


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        80 ---~~~~~~~g~iDilvnnA   96 (255)
T d1fmca_          80 ---DFAISKLGKVDILVNNA   96 (255)
T ss_dssp             ---HHHHHHHSSCCEEEECC
T ss_pred             ---HHHHHHcCCCCEeeeCC
Confidence               55544444445666653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.50  E-value=0.0015  Score=55.30  Aligned_cols=43  Identities=9%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|.+++|++++.++..
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~   49 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECL   49 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            77788888876 77999999999999999999999987665543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.50  E-value=0.0018  Score=54.58  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+...++          +  ..+++.+.  +.+..+++.++
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~----------~--~~~~~~~~~Dvt~~~~v~~~~   70 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE----------I--GPAACAIALDVTDQASIDRCV   70 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH----------H--CTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCceEEEEeeCCCHHHHHHHH
Confidence            66788888876 8899999999999999999999987766554332          1  12232222  23456667776


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||..
T Consensus        71 ---~~~~~~~g~iDilVnnA   87 (256)
T d1k2wa_          71 ---AELLDRWGSIDILVNNA   87 (256)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHhCCccEEEeec
Confidence               55555444445666653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.0017  Score=47.61  Aligned_cols=36  Identities=19%  Similarity=0.393  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .+++|.|||.|.+|..+|..|.+.|.+|+++.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            347899999999999999999999999999988764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0024  Score=53.62  Aligned_cols=83  Identities=10%  Similarity=0.096  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|++++.+.+.++.           .++-.+..-+.+.++++.++  
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----------~~~~~~~~Dvs~~~~v~~~~--   70 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----------PGAVFILCDVTQEDDVKTLV--   70 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------TTEEEEECCTTSHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----------CCCeEEEccCCCHHHHHHHH--
Confidence            77888888886 88999999999999999999999887666554431           11111222233556777777  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.+...+=.++||.+
T Consensus        71 -~~~~~~~g~iDilVnnA   87 (250)
T d1ydea1          71 -SETIRRFGRLDCVVNNA   87 (250)
T ss_dssp             -HHHHHHHSCCCEEEECC
T ss_pred             -HHHHHhcCCCCEEEecc
Confidence             55555554445667664

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.49  E-value=0.0011  Score=52.95  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSK  106 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~  106 (359)
                      .++||+|||.|..|...|..|++.|+ +|+++++++.-
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            35889999999999999999999998 59999987643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.48  E-value=0.013  Score=45.95  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccC-------CCHHHHh-----hcCCEEEEee
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVA-----ASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-------~~~~~~~-----~~aDivi~~~  135 (359)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.++++++.+...+.|....       +...+..     ...|+++.++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~  106 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence            345789999999999999999999985 88899999998887777665321       1122222     1367777777


Q ss_pred             CChhHHHH
Q 018213          136 ADPESAMD  143 (359)
Q Consensus       136 p~~~~~~~  143 (359)
                      ..+...+.
T Consensus       107 G~~~~~~~  114 (176)
T d2jhfa2         107 GRLDTMVT  114 (176)
T ss_dssp             CCHHHHHH
T ss_pred             CchhHHHH
Confidence            54433333

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.0028  Score=53.24  Aligned_cols=89  Identities=16%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             cCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213           68 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  144 (359)
Q Consensus        68 ~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~  144 (359)
                      ++++|++-|.|.+   .||.++|+.|++.|++|.+.+|+.+..+...+        ..+....+..+-.-+.+..+.+.+
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~D~~~~~~v~~~   76 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK--------LAEALGGALLFRADVTQDEELDAL   76 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHTTCCEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH--------hhhccCcccccccccCCHHHHHHH
Confidence            4888999999974   59999999999999999999887543332211        111111222222223455666777


Q ss_pred             hcccccccccCCCCCEEEeccCC
Q 018213          145 ACGKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~~  167 (359)
                      +   +.+.+...+=.++||....
T Consensus        77 ~---~~~~~~~g~iDilVnnag~   96 (256)
T d1ulua_          77 F---AGVKEAFGGLDYLVHAIAF   96 (256)
T ss_dssp             H---HHHHHHHSSEEEEEECCCC
T ss_pred             H---HHHHHhcCCceEEEecccc
Confidence            6   5554444443467776543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.48  E-value=0.0031  Score=53.48  Aligned_cols=85  Identities=12%  Similarity=-0.006  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcC-C--hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-G--IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G--~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      +++|++.|.|. |  .||.++|+.|++.|++|++.+|+++..+...+        +.+....+.++..-+........++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~~~   74 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSLY   74 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHHHH
Confidence            77899999996 5  49999999999999999999998543332221        2222334455544454555556665


Q ss_pred             cccccccccCCCCCEEEec
Q 018213          146 CGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~  164 (359)
                         +++.....+-.++|+.
T Consensus        75 ---~~~~~~~g~id~lV~n   90 (274)
T d2pd4a1          75 ---NSVKKDLGSLDFIVHS   90 (274)
T ss_dssp             ---HHHHHHTSCEEEEEEC
T ss_pred             ---HHHHHHcCCCCeEEee
Confidence               4444444444445544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0024  Score=50.31  Aligned_cols=47  Identities=17%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      .+.+|.|+|. |.+|....+.++..|.+|++.++++++.+.+++.|+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~   75 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH   75 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence            4578999995 9999999999999999999998888777777666653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0061  Score=50.34  Aligned_cols=173  Identities=13%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHH-HCCCcEEEEc-CC-----ccc--hh---HHHh-CC-------CccCCCHHHHhh-c
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWN-RT-----KSK--CD---PLIS-LG-------AKYQPSPDEVAA-S  127 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~-~~g~~V~~~d-~~-----~~~--~~---~~~~-~g-------~~~~~~~~~~~~-~  127 (359)
                      +++++|.|-|+|++|..+|+.|. ..|..|+.++ .+     ++-  ..   ...+ .+       .+.. +.++++. +
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  107 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELD  107 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccc
Confidence            78899999999999999999996 5798887554 21     111  11   1111 11       1222 4556665 8


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  207 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (359)
                      |||++-|.- .    ..+  +.+..+.++. .+|+-.++++. +.+ ..+.|.++|+.+++--+.               
T Consensus       108 ~DI~~PcA~-~----~~I--~~~~a~~l~~-~~I~e~AN~p~-t~~-a~~~L~~rgI~~~PD~~a---------------  162 (234)
T d1b26a1         108 VDILVPAAL-E----GAI--HAGNAERIKA-KAVVEGANGPT-TPE-ADEILSRRGILVVPDILA---------------  162 (234)
T ss_dssp             CSEEEECSC-T----TCB--CHHHHTTCCC-SEEECCSSSCB-CHH-HHHHHHHTTCEEECHHHH---------------
T ss_pred             cceeecchh-c----ccc--cHHHHHHhhh-ceEeecCCCCC-CHH-HHHHHHHCCeEEechHHh---------------
Confidence            999987763 3    223  2333344443 46666666554 443 357788888887752111               


Q ss_pred             cCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213          208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  277 (359)
Q Consensus       208 ~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~  277 (359)
                       ......-...++........+     .    ..-+.+.+...+...+.+.+..+++.++++.+....+.
T Consensus       163 -NaGGVi~s~~E~~qn~~~~~w-----~----~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  222 (234)
T d1b26a1         163 -NAGGVTVSYFEWVQDLQSFFW-----D----LDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILA  222 (234)
T ss_dssp             -TTHHHHHHHHHHHHHHTTCCC-----C----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             -cCCCeeeeehhcccccchhcc-----c----HHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence             011111111122222221110     1    11233334444555566777788888998877665544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.48  E-value=0.0018  Score=54.40  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      +++|.+-|.|. +.||.++|+.|++.|++|.+++|+++..+...+.       +++.  ..++..+.+  .+.++++.++
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvt~~~~v~~~~   78 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKSF--GYESSGYAGDVSKKEEISEVI   78 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHTT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHH
Confidence            55676767776 7899999999999999999999988766554321       1111  123333333  3556777777


Q ss_pred             cccccccccCCCCCEEEec
Q 018213          146 CGKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~  164 (359)
                         +++.+...+=.++||.
T Consensus        79 ---~~~~~~~g~iDilvnn   94 (251)
T d2c07a1          79 ---NKILTEHKNVDILVNN   94 (251)
T ss_dssp             ---HHHHHHCSCCCEEEEC
T ss_pred             ---HHHHHhcCCceeeeec
Confidence               5555555444567765

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.47  E-value=0.002  Score=51.11  Aligned_cols=93  Identities=18%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHC-CCcEEE-EcCCc--cchhHHHhC-----C-----CccCCCHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTK--SKCDPLISL-----G-----AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~-g~~V~~-~d~~~--~~~~~~~~~-----g-----~~~~~~~~~~~~~aDivi~~~  135 (359)
                      |+||+|+|+ |..|+.+.+.|... .+++.. +.++.  ..-+.+...     +     .....+.+....++|++++|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence            478999995 99999999999987 456643 32211  111111110     1     111234444556899999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChH
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                      |. .......   .   .....+..+||.|...-.
T Consensus        81 p~-~~s~~~~---~---~~~~~~~~vIDlSadfRl  108 (179)
T d2g17a1          81 AH-EVSHDLA---P---QFLQAGCVVFDLSGAFRV  108 (179)
T ss_dssp             CH-HHHHHHH---H---HHHHTTCEEEECSSTTSS
T ss_pred             cc-hhHHHHh---h---hhhhcCceeecccccccc
Confidence            74 3443433   2   224578899999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.0021  Score=50.39  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccC-----CCH-HHHh-----hcCCEEEEeeC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQ-----PSP-DEVA-----ASCDVTFAMLA  136 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~-----~~~-~~~~-----~~aDivi~~~p  136 (359)
                      .+.+|.|+|+ |.+|...++.++..| .+|++.++++++.+.+++.|...+     .+. ++..     ...|+++.|+.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            3467999995 999999999999888 589999999888877777665321     122 2222     13688888885


Q ss_pred             ChhHHHHHhcccccccccCCCCCEEEecc
Q 018213          137 DPESAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ......       ..+..++++..++.++
T Consensus       107 ~~~~~~-------~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 SEKTLS-------VYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CHHHHT-------TGGGGEEEEEEEEECC
T ss_pred             cchHHH-------hhhhhcccCCEEEEec
Confidence            433332       2345666777666664

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.43  E-value=0.0044  Score=49.26  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-------C-CccCCCHHHHhhcCCEEEEeeCCh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-------G-AKYQPSPDEVAASCDVTFAMLADP  138 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-------g-~~~~~~~~~~~~~aDivi~~~p~~  138 (359)
                      .++.||||||+ |..|+.+.+.|.... +++.....+...-+.+.+.       . .......++...++|++++++|..
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~   82 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG   82 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc
Confidence            45578999996 999999999999864 4655443222211222110       1 111222344567899999999854


Q ss_pred             hHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD  168 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  168 (359)
                       ....+.   .    .+.+...+|+.+...
T Consensus        83 -~s~~~~---~----~l~~~~~~v~~~~~~  104 (183)
T d2cvoa1          83 -TTQEII---K----GLPQELKIVDLSADF  104 (183)
T ss_dssp             -HHHHHH---H----TSCSSCEEEECSSTT
T ss_pred             -hHHHHH---H----HHHhcCcccccchhh
Confidence             334443   2    233344555554443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.42  E-value=0.002  Score=47.30  Aligned_cols=35  Identities=20%  Similarity=0.473  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .++|.|||.|.+|..+|..|+..|.+|+++.|.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            57899999999999999999999999999998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.41  E-value=0.003  Score=54.20  Aligned_cols=43  Identities=14%  Similarity=0.008  Sum_probs=37.0

Q ss_pred             cCCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213           68 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        68 ~~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~  110 (359)
                      .+++|++.|.| .|.||.++|+.|++.|++|++.+|+.++.+..
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT   65 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            37888888887 59999999999999999999999998765543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.0018  Score=47.91  Aligned_cols=33  Identities=33%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ++++.|||.|.+|..+|..|+++|.+|+++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            468999999999999999999999999999875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0022  Score=47.00  Aligned_cols=35  Identities=17%  Similarity=0.442  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +++|.|||.|.+|..+|..|++.|.+|+++.+.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.37  E-value=0.0021  Score=53.57  Aligned_cols=82  Identities=13%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|++.+|+.++.+...+. .           +.+++.+.  +..+++++.++
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----------~~~~~~~~~Dls~~~~i~~~~   70 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-L-----------EAEAIAVVADVSDPKAVEAVF   70 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-C-----------CSSEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCceEEEEecCCCHHHHHHHH
Confidence            67888988886 6699999999999999999999988765544332 0           12333332  34566777777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.....+=.++||.+
T Consensus        71 ---~~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          71 ---AEALEEFGRLHGVAHFA   87 (241)
T ss_dssp             ---HHHHHHHSCCCEEEEGG
T ss_pred             ---HHHHHHhCCccEecccc
Confidence               66666666666777764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0067  Score=50.24  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHH-CCCcEEEE-cCCcc-------chhHHH---h-C-------CCccCCCHHHHhh-c
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLK-AGCDVTVW-NRTKS-------KCDPLI---S-L-------GAKYQPSPDEVAA-S  127 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~-~g~~V~~~-d~~~~-------~~~~~~---~-~-------g~~~~~~~~~~~~-~  127 (359)
                      +++++|.|-|+|++|..+|+.|.+ .|..|+.. |.+..       ..+.+.   . .       +.... +.++++. +
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  108 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELE  108 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-ccccccccc
Confidence            788999999999999999999864 68887654 43211       111111   1 1       22222 4455553 7


Q ss_pred             CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      |||++-|.- .    ..+  +++..+.++- .+|+-.++++. +.+ ..+.|.++|+.+++
T Consensus       109 ~DIl~PcA~-~----~~I--~~~~a~~i~a-k~I~e~AN~p~-t~e-a~~~L~~rgI~~iP  159 (239)
T d1gtma1         109 VDVLAPAAI-E----EVI--TKKNADNIKA-KIVAEVANGPV-TPE-ADEILFEKGILQIP  159 (239)
T ss_dssp             CSEEEECSC-S----CCB--CTTGGGGCCC-SEEECCSSSCB-CHH-HHHHHHHTTCEEEC
T ss_pred             ccEEeeccc-c----ccc--cHHHHHhccc-cEEEecCCCCC-CHH-HHHHHHHCCCEEec
Confidence            999988773 2    334  3444455533 46666666554 343 35778888888775

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.33  E-value=0.0021  Score=53.73  Aligned_cols=37  Identities=35%  Similarity=0.474  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++.+||.|||.|.-|...|..|++.|++|++++++++
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4458899999999999999999999999999998754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.33  E-value=0.011  Score=46.15  Aligned_cols=48  Identities=21%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      ..+.+|.|+|+|.+|...++.++..|. .|++.++++++.+..++.|..
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~   75 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT   75 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence            345789999999999999999999996 577788888887776666643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0062  Score=52.33  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHH---hhcCCEEEEee--CChhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV---AASCDVTFAML--ADPESAM  142 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~---~~~aDivi~~~--p~~~~~~  142 (359)
                      ++++++.|.|. +.||.++|+.|++.|++|++.+|+.++.+...++       +...   ....+++.+.+  .+.++++
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e-------l~~~~~~~~~~~~~~~~~Dvs~~~~v~   82 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE-------LQANLPPTKQARVIPIQCNIRNEEEVN   82 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhhccccCceEEEEeccCCCHHHHH
Confidence            78888888876 7799999999999999999999998766544321       1110   11345555544  3456777


Q ss_pred             HHhcccccccccCCCCCEEEeccC
Q 018213          143 DVACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      .++   +++.+...+=.++||.+.
T Consensus        83 ~~~---~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          83 NLV---KSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHH---HHHHHHHSCCCEEEECCC
T ss_pred             HHH---HHHHHHhCCeEEEEeecc
Confidence            777   555555555567777643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0069  Score=50.38  Aligned_cols=44  Identities=23%  Similarity=0.133  Sum_probs=37.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~  112 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+.+.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            77888888886 679999999999999999999998876655543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.24  E-value=0.0024  Score=53.72  Aligned_cols=82  Identities=13%  Similarity=0.044  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      +++|++-|.|. +.||.++|+.|++.|++|.+.+|++++.+.+.++          +  ....+++.+  ....+.+.++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~~~~~~   71 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE----------L--GERSMFVRHDVSSEADWTLVM   71 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCCeEEEEeecCCHHHHHHHH
Confidence            67787877775 7799999999999999999999988766554331          1  122333322  3455666666


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +.+.+...+=.++||.+
T Consensus        72 ---~~~~~~~g~iDilVnnA   88 (253)
T d1hxha_          72 ---AAVQRRLGTLNVLVNNA   88 (253)
T ss_dssp             ---HHHHHHHCSCCEEEECC
T ss_pred             ---HHHHHHhCCCCeEEecc
Confidence               55555555556677664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0018  Score=55.13  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             CCeEEEE--cCChhhHHHHHHHHH-CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           71 PGRIGFL--GMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        71 ~~~igii--G~G~iG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +|+|+||  |.+.||.++|+.|++ .|.+|++++|+.++.+...+.       +.+.-.++.++.+-+.+.++++.++  
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~--   72 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALR--   72 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH--
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHH--
Confidence            6889999  678999999999987 489999999998776654331       1111112333333344556777666  


Q ss_pred             cccccccCCCCCEEEecc
Q 018213          148 KHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~s  165 (359)
                       +++.+...+=.++||.+
T Consensus        73 -~~~~~~~g~iDiLVnNA   89 (275)
T d1wmaa1          73 -DFLRKEYGGLDVLVNNA   89 (275)
T ss_dssp             -HHHHHHHSSEEEEEECC
T ss_pred             -HHHHHhcCCcEEEEEcC
Confidence             55544443334666653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.22  E-value=0.0038  Score=45.85  Aligned_cols=37  Identities=27%  Similarity=0.671  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ..++++.|||.|.+|..+|..|+..|.+|++..+...
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            3447899999999999999999999999999987653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0032  Score=46.69  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..|+..|.+|+++.|.+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            37899999999999999999999999999998753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.18  E-value=0.0069  Score=50.66  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|.+.+|+++..+...+.          +-...++..+.+  .+..+++.++
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~~~   73 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTKLF   73 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHHHH
Confidence            67787877775 7899999999999999999999988766554331          111123333333  3456677777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        74 ---~~~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          74 ---DATEKAFGPVSTLVNNA   90 (251)
T ss_dssp             ---HHHHHHHSSCCEEEECC
T ss_pred             ---HHHHHHhCCceEEEecc
Confidence               55555554445777764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.15  E-value=0.0032  Score=53.50  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHH-hhcCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~~--p~~~~~~~~  144 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|++.+|++++.+...+.       +.+. ....++..+.+  .+..+++.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvs~~~~v~~~   75 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI-------ILKSGVSEKQVNSVVADVTTEDGQDQI   75 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCCCceEEEEccCCCHHHHHHH
Confidence            67788877775 7899999999999999999999998766554331       0000 01112333333  345666666


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||.+
T Consensus        76 ~---~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          76 I---NSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             H---HHHHHHHSCCCEEEECC
T ss_pred             H---HHHHHHhCCceEEEeCC
Confidence            6   55555544445666653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.15  E-value=0.0037  Score=46.09  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .++|.|||.|.+|..+|..|++.|.+|+++++.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            47899999999999999999999999999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.15  E-value=0.0092  Score=50.34  Aligned_cols=84  Identities=11%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~  145 (359)
                      +++|++.|.|. +.||.++|+.|++.|++|++.+|+.++.+...+.          +-....+.++.  +.+.++++.++
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~----------l~~~~~~~~~~~Dv~~~~~v~~~~   73 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN----------IGSPDVISFVHCDVTKDEDVRNLV   73 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcCCCceEEEEccCCCHHHHHHHH
Confidence            77888888875 7799999999999999999999988766654432          10111122222  23556777777


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||..
T Consensus        74 ---~~~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          74 ---DTTIAKHGKLDIMFGNV   90 (268)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHcCCcceecccc
Confidence               55555554445666653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.10  E-value=0.0044  Score=45.78  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ...++|.|||.|.+|..+|..|++.|.+|++..+.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            4568999999999999999999999999999988653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.06  E-value=0.0014  Score=50.73  Aligned_cols=91  Identities=13%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC---cEEEEcCCccchhHHHh--CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~~~~--~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                      -||||||+ |..|..+.+.|....+   ++.....+...-+.+..  .........++...+.|++++++| ........
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~-~~~s~~~~   80 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAG-SSTSAKYA   80 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSC-HHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccC-ccchhhHH
Confidence            36999997 9999999999988764   33333322111111100  011112233344568899999997 44444444


Q ss_pred             cccccccccCCCCCEEEeccCCCh
Q 018213          146 CGKHGAASGMGPGKGYVDVSTVDG  169 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s~~~~  169 (359)
                         .   ....++..|||.|...-
T Consensus        81 ---~---~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          81 ---P---YAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             ---H---HHHHTTCEEEECSSTTT
T ss_pred             ---h---hhccccceehhcChhhh
Confidence               2   23457899999977643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.04  E-value=0.0049  Score=52.58  Aligned_cols=67  Identities=22%  Similarity=0.299  Sum_probs=47.3

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchh--------HHHhCCCccC-------CCHHHHhhcCCEEEEe
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--------PLISLGAKYQ-------PSPDEVAASCDVTFAM  134 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~--------~~~~~g~~~~-------~~~~~~~~~aDivi~~  134 (359)
                      ++||.|+| +|.+|+.+++.|.+.|++|++.+|++....        .+...++...       .+..+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            47799999 599999999999999999999998754321        1222343321       1234566788988887


Q ss_pred             eCC
Q 018213          135 LAD  137 (359)
Q Consensus       135 ~p~  137 (359)
                      .+.
T Consensus        83 ~~~   85 (312)
T d1qyda_          83 LAG   85 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.02  E-value=0.0029  Score=51.80  Aligned_cols=65  Identities=12%  Similarity=0.028  Sum_probs=44.2

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEE--EEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVT--VWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~--~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p  136 (359)
                      ++||.|.| .|.+|+.+++.|.+.|++|.  ...|++++...+. .++..       ..+..++++++|.|+.+..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc-CCcEEEEeeeccccccccccccceeeEEEEe
Confidence            47899998 59999999999999998754  4567765443322 12221       1234456778999887763

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0062  Score=51.06  Aligned_cols=88  Identities=17%  Similarity=0.086  Sum_probs=56.0

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHhc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVAC  146 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~~  146 (359)
                      .+|++-|.|. +.||.++|+.|++.|++|.+.+|+.++.+...+.       +.+......+..+.  +.+..+++.++ 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~~~-   73 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQQLRDTF-   73 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhcCCCcEEEEEeecCCHHHHHHHH-
Confidence            3566777776 7799999999999999999999998766554331       11111122333332  33556777777 


Q ss_pred             ccccccccCCCCCEEEeccCC
Q 018213          147 GKHGAASGMGPGKGYVDVSTV  167 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~  167 (359)
                        +.+.+...+=.++||.+..
T Consensus        74 --~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          74 --RKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             --HHHHHHHSCCCEEEECCCC
T ss_pred             --HHHHHHcCCcCeecccccc
Confidence              5555555444577776543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.99  E-value=0.004  Score=52.53  Aligned_cols=86  Identities=14%  Similarity=0.141  Sum_probs=52.5

Q ss_pred             cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHH
Q 018213           68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  143 (359)
Q Consensus        68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~  143 (359)
                      ++++|++-|.|. +.||.++|+.|++.|++|.+.+|+.+. .+...+       .+.+.  ..+++.+.+  .+..+++.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~-------~~~~~--g~~~~~~~~Dvt~~~~v~~   74 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE-------EIKKV--GGEAIAVKGDVTVESDVIN   74 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHHT--TCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-------HHHhc--CCcEEEEEccCCCHHHHHH
Confidence            377787777775 889999999999999999999987542 222221       11111  123333333  34556666


Q ss_pred             HhcccccccccCCCCCEEEecc
Q 018213          144 VACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      ++   +++.+...+=.++||.+
T Consensus        75 ~~---~~~~~~~G~iDiLVnnA   93 (261)
T d1geea_          75 LV---QSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             HH---HHHHHHHSCCCEEEECC
T ss_pred             HH---HHHHHHhCCCCEeeccc
Confidence            66   55544444445666653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.0094  Score=49.71  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=53.0

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  147 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~  147 (359)
                      +++|++-|.| .+.||.++|+.|++.|++|.+.+|+++..+...+.+             ...+-+-+.+..+++.++  
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~-------------~~~~~~Dv~~~~~v~~~~--   67 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIG-------------GAFFQVDLEDERERVRFV--   67 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHT-------------CEEEECCTTCHHHHHHHH--
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------------CeEEEEeCCCHHHHHHHH--
Confidence            6778888887 488999999999999999999999876433222211             122222233556667776  


Q ss_pred             cccccccCCCCCEEEec
Q 018213          148 KHGAASGMGPGKGYVDV  164 (359)
Q Consensus       148 ~~~~~~~l~~~~~vi~~  164 (359)
                       +++.+...+=.++||.
T Consensus        68 -~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1          68 -EEAAYALGRVDVLVNN   83 (248)
T ss_dssp             -HHHHHHHSCCCEEEEC
T ss_pred             -HHHHHhcCCCCeEEEe
Confidence             5555555444566665

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.96  E-value=0.0029  Score=53.62  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=31.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |+|+|||.|.-|...|..|++.|++|+++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            679999999999999999999999999999864

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.034  Score=39.97  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~  146 (359)
                      +..||.|-|. |.-|+..++.+.+.|-+|..- .+|.+.-. ...|+..+++.+|+++  ++|.-++.+|.+.....++ 
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaG-VtPgkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~-   81 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGG-VTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL-   81 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH-
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEE-EccCCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH-
Confidence            3468999997 999999999999999987642 23333211 1246888999999876  5899999998554444444 


Q ss_pred             ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213          147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  187 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  187 (359)
                        +.+-+.+  ..+++-+-..++.|...+.+.++..+..++
T Consensus        82 --EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          82 --EAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             --HHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             --HHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence              4332323  123333344567788888888887777765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.0057  Score=48.30  Aligned_cols=45  Identities=18%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      +.+|.|.|. |.+|...++.++..|.+|++..+++++.+.+++.|+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga   71 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   71 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence            467988885 999999999999999999998888777666665553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.90  E-value=0.003  Score=46.76  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      ++++.|||.|.+|..+|..|.++|.+|++..|++.-
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            478999999999999999999999999999987653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.90  E-value=0.008  Score=52.87  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .+.|||.|.| .|-||+.+++.|.+.|++|+++|+..
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            3458999997 59999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.86  E-value=0.0044  Score=45.12  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..|++.|++|+++.+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            47899999999999999999999999999988654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.85  E-value=0.0039  Score=53.73  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .++++|.|||.|..|...|..|++.|++|+++++++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            556899999999999999999999999999999865

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.82  E-value=0.0058  Score=51.87  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|.+.+|++++.+...
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~   45 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK   45 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56788877776 77999999999999999999999887665543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.82  E-value=0.0041  Score=52.70  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      +|||.|||.|.-|...|..|++.|++|+++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3789999999999999999999999999999764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.81  E-value=0.0057  Score=45.03  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +++.|||.|.+|..+|..|+..|.+|+++.+.+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            7899999999999999999999999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.80  E-value=0.0075  Score=44.14  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ..+++|.|||.|.+|..+|..|+..|.+|+++.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3458999999999999999999999999999998754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0035  Score=52.35  Aligned_cols=44  Identities=18%  Similarity=0.077  Sum_probs=36.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~  112 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|++.+|++++.+++.+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK   48 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            67787777765 899999999999999999999999876665443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.012  Score=48.77  Aligned_cols=43  Identities=14%  Similarity=0.070  Sum_probs=36.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|++.+|+.++.+...
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            77888888876 77999999999999999999999887765543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.76  E-value=0.0055  Score=49.19  Aligned_cols=48  Identities=17%  Similarity=0.108  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      ..+.+|.|+|+|.+|...+..++..|. .|++.|+++++.+...+.|..
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~   72 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE   72 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc
Confidence            345789999999999999999988887 788899998888777776653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.013  Score=48.83  Aligned_cols=40  Identities=15%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++|++-|.|.+   .||.++|+.|++.|++|++.+|+.+..+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~   45 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKG   45 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            678889888875   4899999999999999999999865433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.69  E-value=0.0076  Score=45.08  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ..++|.|||.|.+|..+|..|...|.+|+++++.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            357899999999999999999999999999998754

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.046  Score=39.38  Aligned_cols=111  Identities=21%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~  146 (359)
                      +..||.|-|. |..|+..++.+.+.|-+|..- .+|.+--. .-.|+..+++.+|+++  ++|.-++.+| +....+.++
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaG-VtPgkgG~-~~~giPVf~tV~eAv~~~~~d~SvIfVP-p~~a~dAi~   82 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAG-VTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAAL   82 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEee-eecCCCCc-EEECCchHhhHHHHHHhcCCeEEEEeeC-HHHHHHHHH
Confidence            3467999997 999999999999999887642 23333211 1136788899999876  5899999998 444444431


Q ss_pred             ccccccccCCCCCEEEeccC-CChHHHHHHHHHHHhcCCeeec
Q 018213          147 GKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                        +.+-..+   ..++.++. .++.|...+.+.++..+.++++
T Consensus        83 --EAi~agI---~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG  120 (121)
T d1oi7a1          83 --EAAHAGI---PLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (121)
T ss_dssp             --HHHHTTC---SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             --HHHhCCC---cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence              3333322   23444444 4667778888888877776654

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.69  E-value=1.1e-05  Score=60.35  Aligned_cols=22  Identities=14%  Similarity=-0.034  Sum_probs=19.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCC
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      +++|+|+|+||+.+|+++..+|
T Consensus       100 ~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         100 NLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CEEEEcCCHHHHHHHHHHHhcC
Confidence            3789999999999999998876

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0051  Score=52.06  Aligned_cols=43  Identities=26%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++++-|.|. +.||.++|+.|++.|++|++.+|+.++.+...
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            78899988887 66999999999999999999999987766543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.69  E-value=0.0056  Score=51.55  Aligned_cols=56  Identities=13%  Similarity=0.106  Sum_probs=41.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEee
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~  135 (359)
                      |||.|.|. |-+|+.+++.|...|++|+..+|+.-...        -..+++++++  ..|+|+-+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~--------d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT--------NVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT--------CHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC--------CHHHHHHHHHHcCCCEEEeec
Confidence            78999996 99999999999999999999998643211        1113345554  468877665

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.68  E-value=0.0056  Score=45.32  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..++.+|.+|+++.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            47899999999999999999999999999988764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.006  Score=55.15  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH-----------------------hC--CCc------
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI-----------------------SL--GAK------  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~-----------------------~~--g~~------  116 (359)
                      ++.+||.|||+|.+|..+++.|+..|. +++++|.+.=....+.                       +.  .++      
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            455789999999999999999999997 7999987532211111                       00  111      


Q ss_pred             -cCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213          117 -YQPSPDEVAASCDVTFAMLADPESAMDVA  145 (359)
Q Consensus       117 -~~~~~~~~~~~aDivi~~~p~~~~~~~~~  145 (359)
                       ..+..++.+++.|+|+.++ ++.+.+..+
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~-Dn~~aR~~i  143 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGL-DSIIARRWI  143 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECC-SCHHHHHHH
T ss_pred             cccchHHHHHHhcchheecc-CcHHHHHHH
Confidence             1223356788899999988 566777666

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.68  E-value=0.0052  Score=53.29  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      .+||.|||+|--|...|..|++.|++|++++++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            48899999999999999999999999999998653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.63  E-value=0.0065  Score=50.48  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             eEEEE-cC-ChhhHHHHHHHHHCCCc-------EEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213           73 RIGFL-GM-GIMGTPMAQNLLKAGCD-------VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  143 (359)
Q Consensus        73 ~igii-G~-G~iG~~ia~~l~~~g~~-------V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~  143 (359)
                      +|.+| |. +.||+++|+.|++.|++       |.+++|+.++.+...++       +.+.-.++..+..-+.+..+++.
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~~   74 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRAEGALTDTITADISDMADVRR   74 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHTTTCEEEEEECCTTSHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHHH
Confidence            45544 65 77999999999999987       88999988766554321       11100112222223445667777


Q ss_pred             HhcccccccccCCCCCEEEeccC
Q 018213          144 VACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       144 ~~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      ++   +++.+...+=.++||.+.
T Consensus        75 ~~---~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          75 LT---THIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             HH---HHHHHHTSCCSEEEECCC
T ss_pred             HH---HHHHHHcCCcceeecccc
Confidence            77   566565555557777643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.008  Score=50.03  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      ++..+|.|||+|.+|+.++..|+..|. +++++|.+.=....+..+        |-..+....+.+.  +.++-+...+.
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            566899999999999999999999997 788998764333333221        2111211222221  35666666643


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                      ........       ..+....+++++.. .......+.+.....++.++.+...
T Consensus       108 ~~~~~~~~-------~~~~~~divid~~d-~~~~~~~in~~~~~~~ip~i~g~~~  154 (247)
T d1jw9b_         108 LLDDAELA-------ALIAEHDLVLDCTD-NVAVRNQLNAGCFAAKVPLVSGAAI  154 (247)
T ss_dssp             CCCHHHHH-------HHHHTSSEEEECCS-SHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             hhhhcccc-------ccccccceeeeccc-hhhhhhhHHHHHHHhCCCccccccc
Confidence            22222221       12334567777643 3444456666666777777765443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.56  E-value=0.0072  Score=50.91  Aligned_cols=88  Identities=11%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHH-hhcCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~~--p~~~~~~~~  144 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+...++       +.+. ....++..+.+  ....+++.+
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvt~~~~v~~~   75 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ-------ILAAGVSEQNVNSVVADVTTDAGQDEI   75 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCcCceEEEEccCCCHHHHHHH
Confidence            56676666665 8899999999999999999999998766554321       1000 01112333333  345666777


Q ss_pred             hcccccccccCCCCCEEEeccC
Q 018213          145 ACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +   +++.+...+=.++||...
T Consensus        76 ~---~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          76 L---STTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHhCCCCEeecccc
Confidence            6   555555555567777643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.55  E-value=0.048  Score=42.33  Aligned_cols=48  Identities=19%  Similarity=0.281  Sum_probs=40.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      ..+.+|.|+|.|.+|...+..++..|. +|++.++++++.+...+.|+.
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd   75 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT   75 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence            345779999999999999999988876 688999999988888877753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.52  E-value=0.011  Score=51.48  Aligned_cols=67  Identities=21%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC---------------CCccCCCHHHHhhcCCEEE
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---------------GAKYQPSPDEVAASCDVTF  132 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---------------g~~~~~~~~~~~~~aDivi  132 (359)
                      ..+++|.|.|. |-||+.+++.|.+.|++|.+..|+.++...+...               .+.-..++++++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            45799999985 9999999999999999999988876554433211               1112234556778888887


Q ss_pred             Eee
Q 018213          133 AML  135 (359)
Q Consensus       133 ~~~  135 (359)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.51  E-value=0.022  Score=47.51  Aligned_cols=87  Identities=10%  Similarity=0.072  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCC---hhHHHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD---PESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~---~~~~~~~  144 (359)
                      +++++|-|.|. +.||.++|+.|++.|.+|++..|+.++.+.+.+        +........+.+..+-.   ..+.+.+
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~   74 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE--------LKAINPKVNITFHTYDVTVPVAESKKL   74 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH--------HHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH--------HHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence            77899999986 679999999999999999888776665443322        12222333454444422   2346666


Q ss_pred             hcccccccccCCCCCEEEeccC
Q 018213          145 ACGKHGAASGMGPGKGYVDVST  166 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s~  166 (359)
                      +   +.+.....+=.++||.+.
T Consensus        75 ~---~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          75 L---KKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEeCCC
Confidence            6   555555544346776643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.50  E-value=0.008  Score=50.84  Aligned_cols=85  Identities=16%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~  144 (359)
                      ++++++-|.| .+.||.++|+.|++.|++|++.+++.+. .+...+       .+++.  ..++..+.+  .+.+++..+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------~~~~~--g~~~~~~~~D~~~~~~v~~~   86 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVA-------AIKKN--GSDAACVKANVGVVEDIVRM   86 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-------HHHhh--CCceeeEeCCCCCHHHHHHH
Confidence            7788888887 5899999999999999999998876432 222221       11111  233444333  345566666


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||..
T Consensus        87 ~---~~~~~~~g~idilV~na  104 (272)
T d1g0oa_          87 F---EEAVKIFGKLDIVCSNS  104 (272)
T ss_dssp             H---HHHHHHHSCCCEEEECC
T ss_pred             H---HHHHHHhCCCCcccccc
Confidence            6   55544444445666653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.48  E-value=0.013  Score=48.79  Aligned_cols=83  Identities=12%  Similarity=0.084  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHHh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  145 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~~  145 (359)
                      ++++++-|.|. +.||+++|+.|++.|++|.+.+|++.+..  .+       ..++.  ..+++.+.+  .+..+++.++
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~--~~-------~~~~~--g~~~~~~~~Dvs~~~~v~~~~   71 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA--EA-------AIRNL--GRRVLTVKCDVSQPGDVEAFG   71 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH--HH-------HHHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH--HH-------HHHHc--CCcEEEEEeeCCCHHHHHHHH
Confidence            67787878776 77999999999999999999999764311  11       01111  123333333  3556677776


Q ss_pred             cccccccccCCCCCEEEecc
Q 018213          146 CGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       146 ~~~~~~~~~l~~~~~vi~~s  165 (359)
                         +++.+...+=.++||.+
T Consensus        72 ---~~~~~~~G~iDilVnnA   88 (247)
T d2ew8a1          72 ---KQVISTFGRCDILVNNA   88 (247)
T ss_dssp             ---HHHHHHHSCCCEEEECC
T ss_pred             ---HHHHHHcCCCCEEEECC
Confidence               55555554445677664

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.47  E-value=0.027  Score=43.00  Aligned_cols=65  Identities=17%  Similarity=0.046  Sum_probs=46.3

Q ss_pred             CCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccc---hhHHHhC--CCccCCCHHHHhhcCCEEEEe
Q 018213           70 LPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSK---CDPLISL--GAKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        70 ~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~---~~~~~~~--g~~~~~~~~~~~~~aDivi~~  134 (359)
                      .+.||++||=   +++..+++..+..+|+++.++.+.+..   .......  .+..+++++++++++|+|...
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            4688999995   559999999999999997655442211   1111122  355677999999999998754

>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Conserved hypothetical protein MTH1747
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.45  E-value=0.054  Score=38.72  Aligned_cols=100  Identities=13%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch--hhhhcccccccCCCCCCcchhHHHHHHH
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP--MYSLKGPSMIESLYPTAFPLKHQQKDLR  312 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~kd~~  312 (359)
                      |.+.++|++...+..++.+++.|++..+++.|+..+.+..+-.+.. ..+  ......+.+..       .......++.
T Consensus         1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~~~l~~s~~-~~~~~~~~~~v~~~~~-------ha~Rr~~EM~   72 (112)
T d1i36a1           1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEMLEYTEG-NDFRESAISRLKSSCI-------HARRRYEEMK   72 (112)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSC-SSTHHHHHHHHHHHHH-------THHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-ccHHHHHHHHhcCCcc-------hhhHHHHHHH
Confidence            5689999999999999999999999999999998877755543322 111  11111111111       1123456678


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018213          313 LALGLAESVSQSTPIAAAANELYKVAKSHGL  343 (359)
Q Consensus       313 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~  343 (359)
                      .+.++.++. ++..+.+++.++++...+-+.
T Consensus        73 Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~  102 (112)
T d1i36a1          73 EVQDMLAEV-IDPVMPTCIIRIFDKLKDVKV  102 (112)
T ss_dssp             HHHHHHHTT-SCCSHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHh-CCchHHHHHHHHHHHHHhcCC
Confidence            888888874 888899999999998876543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.41  E-value=0.011  Score=48.66  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|+.+..+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~   42 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK   42 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            67788989986 77999999999999999999999875433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.38  E-value=0.018  Score=48.02  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh----CCCc---cCCCHHHHhh--cCCEEEEeeCChh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK---YQPSPDEVAA--SCDVTFAMLADPE  139 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~---~~~~~~~~~~--~aDivi~~~p~~~  139 (359)
                      ..+++|.=+|+|. |. ++..+++.|.+|+++|.++..++..++    .++.   ...+..+.+.  ..|+|+... ...
T Consensus       119 ~~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~  195 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAE  195 (254)
T ss_dssp             CTTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHH
T ss_pred             CccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-ccc
Confidence            4568999999996 53 455677889999999999987765543    2432   2335555543  478888776 466


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....++   +.+...++||..++-. .....+.+.+.+.+++.|...+.
T Consensus       196 ~l~~l~---~~~~~~LkpGG~lilS-gil~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         196 LHAALA---PRYREALVPGGRALLT-GILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             HHHHHH---HHHHHHEEEEEEEEEE-EEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             cHHHHH---HHHHHhcCCCcEEEEE-ecchhhHHHHHHHHHHCCCEEEE
Confidence            677777   7777888988776632 22234566788888888876654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0076  Score=49.58  Aligned_cols=68  Identities=22%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCC-------ccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +++++|.|.|. |-+|+.+.+.|.+.|.  +|++.+|++..........+       ....++.+.+..+|+++.++.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            67789999985 9999999999988884  89999987654322111111       112244455667888777663

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.02  Score=44.17  Aligned_cols=67  Identities=15%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcC--ChhhHHHHHHHHHCCCcEEEEcCCccch-hH--------HHhC--CCccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DP--------LISL--GAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~--G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~--------~~~~--g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.||++||=  .++-.+++..+..+|+++.++.+..-.. ..        ..+.  .+....+++++++++|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            35689999993  5899999999999999999988742111 11        1111  2456789999999999998755

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.21  E-value=0.016  Score=47.94  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +++|++-|.|. +.||.++|+.|++.|++|.+.+|+.+..+
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            67788878876 67999999999999999999999876543

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.21  E-value=0.061  Score=42.65  Aligned_cols=102  Identities=12%  Similarity=0.116  Sum_probs=72.4

Q ss_pred             HHHHHHHHHCCCcEEEEcCCcc----chhHHHhCCCccCCCHHHHhhcCCEEEEee-CChhHHHHHhcccccccccCCCC
Q 018213           84 TPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQPSPDEVAASCDVTFAML-ADPESAMDVACGKHGAASGMGPG  158 (359)
Q Consensus        84 ~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~~~~~~~aDivi~~~-p~~~~~~~~~~~~~~~~~~l~~~  158 (359)
                      -..++.|.+.|++|.+=.--..    .-+.+.+.|++..++.++++.++|+|+-.- |...+   .   ..+.+..+++|
T Consensus        20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e---~---~~~ei~~lk~g   93 (194)
T d1l7da2          20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE---E---GTDEVALIKEG   93 (194)
T ss_dssp             HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG---G---SCCGGGGSCTT
T ss_pred             HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc---c---chhHhhhccCc
Confidence            4567889999999998432111    124567779999989999999999887544 43221   1   13345789999


Q ss_pred             CEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213          159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  193 (359)
Q Consensus       159 ~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  193 (359)
                      +++|..  -.|....++.+.+.++++..++.....
T Consensus        94 ~~li~~--l~p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          94 AVLMCH--LGALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             CEEEEE--CCGGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             eEEEEe--cccccchhHHHHHHhcCceEEeeeccc
Confidence            999944  456666778888999999988865553

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.18  E-value=0.012  Score=49.68  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH---------HHhCCCccC-------CCHHHHhhcCCEEEE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---------LISLGAKYQ-------PSPDEVAASCDVTFA  133 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~---------~~~~g~~~~-------~~~~~~~~~aDivi~  133 (359)
                      ++||.|+|. |.+|+.+++.|.+.|++|++.+|++.....         +...++...       .+..+.+..+|.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            488999996 999999999999999999999997654221         112233221       123455677888877


Q ss_pred             eeC
Q 018213          134 MLA  136 (359)
Q Consensus       134 ~~p  136 (359)
                      +.+
T Consensus        83 ~~~   85 (307)
T d1qyca_          83 TVG   85 (307)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            664

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.11  E-value=0.012  Score=51.35  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH--HHh-CCCcc-----CCC---HHHHhhcCCEEEEeeCC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP--LIS-LGAKY-----QPS---PDEVAASCDVTFAMLAD  137 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~--~~~-~g~~~-----~~~---~~~~~~~aDivi~~~p~  137 (359)
                      +++|.|+|. |.+|+.+++.|.+.|++|++..|++++...  +.. .++..     .+.   ++.++..+|.+++..+.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            588999985 999999999999999999999998765432  222 13321     221   34566788988877653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=95.07  E-value=0.027  Score=46.78  Aligned_cols=88  Identities=14%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  148 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~  148 (359)
                      .+++||++||.-    .....+.+.|.++.+++|+++.       |.......++++.+||+|++.-  +.-+.+-+   
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl---  183 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITC--ASVVDKTL---  183 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH---
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEe--chhhcCCH---
Confidence            467899999874    4556677888999999998753       2333345678999999999976  44555555   


Q ss_pred             ccccccCCCCCEEEeccCCChHHH
Q 018213          149 HGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      +.++...++...++-++-+.|...
T Consensus       184 ~~LL~~~~~a~~vvl~GPS~p~~P  207 (251)
T d2h1qa1         184 PRLLELSRNARRITLVGPGTPLAP  207 (251)
T ss_dssp             HHHHHHTTTSSEEEEESTTCCCCG
T ss_pred             HHHHHhCCcCCEEEEECCCcccCH
Confidence            666777777776766665555433

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.045  Score=42.41  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      ..+|+|+|+|++|+.+++.+....
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCC
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHhH
Confidence            357999999999999999998654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.05  E-value=0.011  Score=51.61  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      ++|||.|.| .|-||+.+++.|.+.|++|.+++|+.....
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~   46 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVP   46 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccH
Confidence            468999998 599999999999999999999999766543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.04  E-value=0.021  Score=47.37  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             EEEE--cCChhhHHHHHHHHHCCCcEEEE-cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHhccc
Q 018213           74 IGFL--GMGIMGTPMAQNLLKAGCDVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVACGK  148 (359)
Q Consensus        74 igii--G~G~iG~~ia~~l~~~g~~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~~~~  148 (359)
                      |.+|  |.+.||+++|+.|++.|++|.+. .|+++..+.+.+       .+++.  ..+++.+.  +.+.++++.++   
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~-------~~~~~--g~~~~~~~~Dv~~~~~v~~~~---   70 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK-------QIEAY--GGQAITFGGDVSKEADVEAMM---   70 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHHH--TCEEEEEECCTTSHHHHHHHH---
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-------HHHHc--CCcEEEEeCCCCCHHHHHHHH---
Confidence            5555  46889999999999999999875 455544443332       11111  22333333  33456667776   


Q ss_pred             ccccccCCCCCEEEecc
Q 018213          149 HGAASGMGPGKGYVDVS  165 (359)
Q Consensus       149 ~~~~~~l~~~~~vi~~s  165 (359)
                      +++.+...+=.++||.+
T Consensus        71 ~~~~~~~g~iDiLVnnA   87 (244)
T d1edoa_          71 KTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             HHHHHHSSCCSEEEECC
T ss_pred             HHHHHHcCCCCcccccc
Confidence            55555554445777764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.98  E-value=0.011  Score=49.66  Aligned_cols=86  Identities=14%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCCCHHHHhhcCCEEEEee--CChhHHHHH
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  144 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~~--p~~~~~~~~  144 (359)
                      +++|++-|.|. +.||.++|+.|++.|++|++.+|+.. ..+...+       .+.+. ...+++.+.+  .+.++++.+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~-------~~~~~-~g~~~~~~~~Dv~~~~~v~~~   73 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA-------GLAAQ-HGVKVLYDGADLSKGEAVRGL   73 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH-------HHHHH-HTSCEEEECCCTTSHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-------HHHHh-cCCcEEEEECCCCCHHHHHHH
Confidence            55676666665 77999999999999999999998743 3332221       11111 1234444433  345566666


Q ss_pred             hcccccccccCCCCCEEEecc
Q 018213          145 ACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       145 ~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +   +++.+...+=.++||.+
T Consensus        74 ~---~~~~~~~G~iDiLVnnA   91 (260)
T d1x1ta1          74 V---DNAVRQMGRIDILVNNA   91 (260)
T ss_dssp             H---HHHHHHHSCCSEEEECC
T ss_pred             H---HHHHHHhCCCcEEEeec
Confidence            6   55544444445666653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.97  E-value=0.01  Score=49.73  Aligned_cols=40  Identities=18%  Similarity=0.097  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEE-cCCccchh
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVW-NRTKSKCD  108 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~-d~~~~~~~  108 (359)
                      +.+|++-|.|. +.||.++|+.|++.|++|++. +++.+..+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~   45 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE   45 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHH
Confidence            77888888875 779999999999999999875 45444333

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.023  Score=49.28  Aligned_cols=65  Identities=18%  Similarity=0.300  Sum_probs=43.9

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CC-------ccCCCHH-HHhhcCCEEEEeeC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GA-------KYQPSPD-EVAASCDVTFAMLA  136 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~-------~~~~~~~-~~~~~aDivi~~~p  136 (359)
                      |||.|.|. |-||+.+++.|.+.|+ +|++.|+.......+.+. ++       ....+.. ...+++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            68999975 9999999999999995 899998765443333221 11       1111222 36678999887663

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.95  E-value=0.015  Score=47.72  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ...++|.|||.|..|...|..|++.|++|++++++.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            5668999999999999999999999999999998764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.95  E-value=0.004  Score=46.26  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CeEEEEcCChhhHHHHHHHH-HCCCcEE-EEcCCccch
Q 018213           72 GRIGFLGMGIMGTPMAQNLL-KAGCDVT-VWNRTKSKC  107 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~-~~g~~V~-~~d~~~~~~  107 (359)
                      .+|.|+|+|++|+++++.+. ..|+++. ++|-++++.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~   41 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV   41 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence            46999999999999998764 3467765 567776543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.93  E-value=0.013  Score=48.87  Aligned_cols=34  Identities=32%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~  105 (359)
                      ++|.|||.|.-|..+|..|++.|. +|.+++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            679999999999999999999995 8999998764

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.05  Score=41.54  Aligned_cols=108  Identities=13%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cccchhhhhcccccccCCCC---------CCcchhHHHHH
Q 018213          244 VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLKGPSMIESLYP---------TAFPLKHQQKD  310 (359)
Q Consensus       244 ~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~~kd  310 (359)
                      .|...+.+..++.|+..+++..|-+++++.....-+    +..+..-..++..+.++...         ....+.++..-
T Consensus        34 ~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t  113 (155)
T d1txga1          34 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKT  113 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccchHHHHH
Confidence            478888888999999999999999888776543322    11221111223333333210         01123345555


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  358 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  358 (359)
                      ...+.++++++++++|+.+++++++..       +.|...+++.|-.+
T Consensus       114 ~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L~~R  154 (155)
T d1txga1         114 AEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELATF  154 (155)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHHHcC
Confidence            788899999999999999999998853       45666666665443

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.85  E-value=0.035  Score=39.65  Aligned_cols=62  Identities=5%  Similarity=0.044  Sum_probs=47.8

Q ss_pred             CeEEEEcC----------ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213           72 GRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        72 ~~igiiG~----------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      ++|||+|+          ..-...+.+.|...|.+|.+||+.....+.  ..+.....+++++...+|+|++..
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSS
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcC
Confidence            58999987          245677899999999999999997654321  235666789999999999877655

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.78  E-value=0.014  Score=48.85  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|-+|.++|..|++.|++|+++++..
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999854

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.76  E-value=0.037  Score=43.42  Aligned_cols=88  Identities=18%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-----CCC-HHHHh-----hcCCEEEEeeCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPS-PDEVA-----ASCDVTFAMLAD  137 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~-~~~~~-----~~aDivi~~~p~  137 (359)
                      .+.+|.|.|. |.+|...++..+..|.+|++..+++++.+.+++.|...     ..+ .+.+.     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            3567888887 77999999999999999999999888877777776532     111 22222     23788888874 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEecc
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      .+.....       ++.++++..++.++
T Consensus       108 ~~~~~~~-------~~~l~~~G~~v~~G  128 (182)
T d1v3va2         108 GEFLNTV-------LSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHHH-------GGGEEEEEEEEECC
T ss_pred             chhhhhh-------hhhccCCCeEEeec
Confidence            4333333       35667777777664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.73  E-value=0.016  Score=50.33  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~  105 (359)
                      ...+||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            34588999999999999999998765  69999998753

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.02  Score=49.67  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.2

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      |||.|+|. |-+|+.+++.|.+.|++|++.||.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            78999975 999999999999999999999863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.64  E-value=0.019  Score=49.25  Aligned_cols=91  Identities=15%  Similarity=0.032  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC-CHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~~  146 (359)
                      ++++++-|-|. +.||+++|+.|++.|++|++.|++.+......  ...... ..++.-...-.+...+......+.++ 
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-   81 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGK--GSSAADKVVEEIRRRGGKAVANYDSVEAGEKLV-   81 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBC--CSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhh--hHHHHHHHHHHHhhcccccccccchHHHHHHHH-
Confidence            66777777776 77999999999999999999998764321000  000000 01122223333444443455666666 


Q ss_pred             ccccccccCCCCCEEEec
Q 018213          147 GKHGAASGMGPGKGYVDV  164 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~  164 (359)
                        +...+...+=.++||.
T Consensus        82 --~~~~~~~G~iDiLVnN   97 (302)
T d1gz6a_          82 --KTALDTFGRIDVVVNN   97 (302)
T ss_dssp             --HHHHHHTSCCCEEEEC
T ss_pred             --HHHHHHcCCCCEEEEC
Confidence              5555555444566665

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.53  E-value=0.018  Score=47.81  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=28.0

Q ss_pred             CeEEEE-c-CChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           72 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igii-G-~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      |||.|| | .+.||+++|+.|++.|++|++.+|+.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            445454 6 578999999999999999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.022  Score=48.67  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      +..||.|||.|--|..-|..|++.|++|+++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            44789999999999999999999999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.50  E-value=0.0028  Score=52.20  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDV   97 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V   97 (359)
                      |||.|||+|-+|...|..|++.|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            68999999999999999999999753

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.48  E-value=0.026  Score=43.80  Aligned_cols=46  Identities=30%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK  116 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~  116 (359)
                      +.+|.|-| .|.+|....+..+..|.+|+...+++++.+.+.+.|..
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad   70 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS   70 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence            45688888 59999999999999999999999998888777665543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.029  Score=43.83  Aligned_cols=44  Identities=18%  Similarity=0.117  Sum_probs=36.6

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  114 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g  114 (359)
                      +.+|.|+|. |.+|....+.++..|.+|++.++++++.+.+++.|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG   73 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG   73 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence            468999955 66999999999999999999999988777665544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.47  E-value=0.019  Score=44.40  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~  105 (359)
                      ++||.|||.|..|..+|..|.+.+.  +|+++++++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            5889999999999999999998874  7889988763

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.025  Score=37.70  Aligned_cols=45  Identities=31%  Similarity=0.345  Sum_probs=38.0

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  114 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g  114 (359)
                      ++.+|.|.|. |.+|....+.++..|++|++..+++++.+.+++.|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            4567888875 99999999999999999999999988877766544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=0.013  Score=49.68  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=30.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +|.|||+|..|..+|..|++.|++|.+++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998763

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.30  E-value=0.02  Score=46.67  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHH--CCCcEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~--~g~~V~~~d~~~~  105 (359)
                      .||+|||.|.-|...|..|.+  .|++|++|++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            479999999999999999975  4789999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.25  E-value=0.021  Score=46.83  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=29.4

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      +|.|||.|.-|...|..|++.|+ +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999996 799999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.13  E-value=0.026  Score=47.17  Aligned_cols=39  Identities=13%  Similarity=0.055  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcC-Ch--hhHHHHHHHHHCCCcEEEEcCCccch
Q 018213           69 ELPGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTKSKC  107 (359)
Q Consensus        69 ~~~~~igiiG~-G~--iG~~ia~~l~~~g~~V~~~d~~~~~~  107 (359)
                      +++|++.|.|+ |.  ||.++|+.|++.|++|++.+|+.++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            78899999996 54  99999999999999999999887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.11  E-value=0.12  Score=41.62  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc----c----chhHH----HhC--CCccCCCHHHHhhcCCEEEE
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK----S----KCDPL----ISL--GAKYQPSPDEVAASCDVTFA  133 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~----~----~~~~~----~~~--g~~~~~~~~~~~~~aDivi~  133 (359)
                      +++.||.|+|+|.-|..+++.+...+. +++.+|+..    +    ..+..    .+.  ......++.+++..+++++.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g  103 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIG  103 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecc
Confidence            778999999999999999999988775 688888851    1    11111    111  12234577888888888766


Q ss_pred             eeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213          134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  172 (359)
Q Consensus       134 ~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  172 (359)
                      ...     ..++  .++....|.+.-+|.-+|+-.+..+
T Consensus       104 ~~~-----~~~~--~~e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1         104 VSR-----GNIL--KPEWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             CSC-----SSCS--CHHHHTTSCSSCEEEECCSSSCSSC
T ss_pred             ccc-----cccc--cHHHHhhcCCCCEEEecCCCccchh
Confidence            552     2222  2233456677788888877665444

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.09  E-value=0.014  Score=45.79  Aligned_cols=46  Identities=28%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+.+|.|.| .|.+|....+.++..|.+|+...+++++.+.+.+.|.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa   77 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA   77 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc
Confidence            356799998 5999999999999999999999998888777776654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.04  E-value=0.025  Score=43.12  Aligned_cols=62  Identities=18%  Similarity=0.064  Sum_probs=48.0

Q ss_pred             CCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213           71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        71 ~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +.+|++||=   +++..+++..+..+|+++.++.+..-..   .+..+....+++++++++|+|....
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhccccCceeeeeE
Confidence            578999996   6899999999999999998887643111   1234556778999999999987644

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.03  E-value=0.013  Score=47.80  Aligned_cols=34  Identities=26%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-------CcEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-------~~V~~~d~~~~  105 (359)
                      .||+|||.|.-|.+.|..|.+.|       ++|++|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            68999999999999999999887       47999998764

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.03  E-value=0.048  Score=42.98  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcC--ChhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHH----h--CCCccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLI----S--LGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~--G~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~----~--~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.||++||=  -++..+++..+..+|+++.++.+..-.     .+...    .  ..+..+.+++++++++|+|..-.
T Consensus         3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~   82 (185)
T d1dxha2           3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV   82 (185)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence            66789999994  489999999999999999999873211     11111    1  13456789999999999988755

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.91  E-value=0.072  Score=40.97  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHHh------CCCccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLIS------LGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~------~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +++.+|++||= .++..+++..+..+|+++.++.+..-.     .+...+      ..+..+.+++++++++|+|..-.
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            67899999996 458889999999999999998764211     111111      12456779999999999988643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.027  Score=48.28  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=29.0

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      +||.|.|. |-+|+.+++.|.+.|++|+++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            78999975 999999999999999999999863

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.03  Score=45.37  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|.-|...|..|++.|++|.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.025  Score=48.30  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ..|.|||+|-.|..+|+.|++.|++|.+++++..
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3589999999999999999999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.70  E-value=0.029  Score=47.93  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +...|.|||+|.-|.++|..|++.|.+|++++++++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            345699999999999999999999999999998765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.69  E-value=0.03  Score=47.53  Aligned_cols=32  Identities=38%  Similarity=0.687  Sum_probs=29.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~  104 (359)
                      +|.|||.|-+|.++|..|++.|. +|+++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            59999999999999999999995 799999864

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.69  E-value=0.15  Score=40.27  Aligned_cols=95  Identities=12%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             HHHHHHHHCCCcEEEEcCCcc----chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213           85 PMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  160 (359)
Q Consensus        85 ~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~  160 (359)
                      ..++.|.+.|++|.+=.--..    .-+.+.+.|+...++.+++. ++|+|+-.-|.+          .+-...|++|++
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~----------~~e~~~lk~~~~   89 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL----------PAEYDLMQKDQL   89 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC----------GGGGGGCCTTCE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC----------HHHHHhhhcCce
Confidence            457788889999998532211    12345666898888887776 689887544322          223467899999


Q ss_pred             EEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213          161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVS  192 (359)
Q Consensus       161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  192 (359)
                      +|  +-..|....++.+.+.++++..++....
T Consensus        90 li--~~l~p~~~~ell~~l~~~~it~~s~E~i  119 (193)
T d1pjca2          90 LF--TYLHLAAARELTEQLMRVGLTAIAYETV  119 (193)
T ss_dssp             EE--ECCCGGGCHHHHHHHHHHTCEEEEGGGC
T ss_pred             EE--EecCcccchHHHHHHHHcCCEEEEeeec
Confidence            99  4555666678888898999988875544

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.65  E-value=0.042  Score=42.00  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccch-----hHHHhCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +.+.||++||=   +++..+++..+..+|+++.++.+..-..     ..+.+.+  +..+.+++++++++|+|....
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            56789999997   6899999999999999999987643221     1222333  345778999999999987755

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.58  E-value=0.03  Score=43.46  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=27.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      |||||=|+|+||+.+.+.|...+.+|...+-
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence            6899999999999999999888899887764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.50  E-value=0.02  Score=46.00  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK  104 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~  104 (359)
                      ++||.|+|. |.+|+.+++.|.+.|+  +|....|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            488999987 9999999999999997  556556554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.47  E-value=0.055  Score=44.72  Aligned_cols=43  Identities=26%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~  112 (359)
                      ++++|-|.|. +.||.++|+.|++.|+  .|++.+|+.++.+++.+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            3477877776 8899999999999995  68888898877766543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.44  E-value=0.042  Score=39.65  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHH---CCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLK---AGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~---~g~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..|..   .|.+|+++.+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            4789999999999999987765   4789999988654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.39  E-value=0.014  Score=41.74  Aligned_cols=35  Identities=6%  Similarity=-0.057  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      .++++|.|||.|+-|.-+|..|+..+-+|+...|+
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            66799999999999999999999877666555444

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=93.38  E-value=0.78  Score=33.90  Aligned_cols=128  Identities=10%  Similarity=0.056  Sum_probs=72.9

Q ss_pred             CeEEEE---cCCh---hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh-----hH
Q 018213           72 GRIGFL---GMGI---MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ES  140 (359)
Q Consensus        72 ~~igii---G~G~---iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~-----~~  140 (359)
                      .|+.||   .+|+   |...|++.+...|++|..++.+....+.           +...+.++|.|++.+|.-     +.
T Consensus         3 ~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~d~ii~Gspt~~g~~~~~   71 (149)
T d1ycga1           3 AKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRND-----------VIKEILDARAVLVGSPTINNDILPV   71 (149)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHH-----------HHHHHHHCSEEEEECCCBTTBCCGG
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHH-----------HhhhhhhCCeEEEEeecccCCCCHH
Confidence            456666   3454   7888999999999999988764332221           122345799999999853     34


Q ss_pred             HHHHhcccccccccCCCCCEEEec-cCC-ChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHH
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDV-STV-DGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVA  218 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~-s~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~  218 (359)
                      .+..+   ..+...-.++..+.-. +.+ .....+.+.+.++..|...+..+..           ..-...+++..++++
T Consensus        72 ~~~~l---~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~-----------~~~~~P~~~dl~~~~  137 (149)
T d1ycga1          72 VSPLL---DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGP-----------TVQWVPRGEDLQRCY  137 (149)
T ss_dssp             GHHHH---HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCC-----------EEESSCCHHHHHHHH
T ss_pred             HHHHH---HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceE-----------EEcccCCHHHHHHHH
Confidence            55555   3332222223322221 222 2344567888888888877754311           111123566667776


Q ss_pred             HHHHHh
Q 018213          219 PLLDIM  224 (359)
Q Consensus       219 ~ll~~l  224 (359)
                      ++-+.+
T Consensus       138 e~g~~i  143 (149)
T d1ycga1         138 ELGRKI  143 (149)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.30  E-value=0.036  Score=43.97  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTK  104 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~  104 (359)
                      |||.|||.|..|..+|..|++.+  .+|+++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            78999999999999999998864  5799998754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.15  E-value=0.068  Score=44.06  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHH---HCCCcEEEEcCCccchhHH
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLL---KAGCDVTVWNRTKSKCDPL  110 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~---~~g~~V~~~d~~~~~~~~~  110 (359)
                      +++|-|.|. +.||.++|+.|.   +.|++|++.+|++++.+.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            467888886 789999999986   4689999999998876544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.09  E-value=0.044  Score=45.80  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|.+|.+.|..|++.|++|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999853

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.96  E-value=0.35  Score=35.01  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=70.7

Q ss_pred             CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhc
Q 018213           70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  146 (359)
Q Consensus        70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~  146 (359)
                      +..||.|-|. |.-|+..++.+.+.|-+|.+- .+|.+--. .-.|+.++++.+|+.+  ++|.-++.+| +....+.++
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgKgG~-~~~giPVf~tV~eA~~~~~~daSvIfVP-p~~a~dAi~   90 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVP-PPFAAAAIN   90 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHHH
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCCCCc-cccCccchhhHHHHHHhcCCcEEEEecC-HHHHHHHHH
Confidence            4578999997 999999999999999887643 22333211 1236788899999886  6899999998 444444431


Q ss_pred             ccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhc-CCeee
Q 018213          147 GKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-GASFL  187 (359)
Q Consensus       147 ~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-~~~~~  187 (359)
                        +.+-+.+   .+++-++-+ ++.|...+.+.+.+. +.+++
T Consensus        91 --EAi~agI---~liV~ITEgIPv~Dm~~i~~~~~~~~~~~li  128 (130)
T d1euca1          91 --EAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI  128 (130)
T ss_dssp             --HHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred             --HHHhCCC---CEEEEecCCCCHHHHHHHHHHHHhCCCcEEe
Confidence              4333333   244555555 455666666655333 45544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.91  E-value=0.093  Score=43.50  Aligned_cols=42  Identities=24%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             CCCCeEEEE-cC-ChhhHHHHHHHHH---CCCcEEEEcCCccchhHHH
Q 018213           69 ELPGRIGFL-GM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        69 ~~~~~igii-G~-G~iG~~ia~~l~~---~g~~V~~~d~~~~~~~~~~  111 (359)
                      ++++ |+|| |. +.||.++|+.|++   .|++|++.+|+.++.+.+.
T Consensus         4 L~gK-valITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           4 LGCA-VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLK   50 (259)
T ss_dssp             CBSE-EEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCC-EEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHH
Confidence            4444 5666 65 6899999999986   6899999999987766543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.12  Score=47.75  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~  137 (359)
                      +...+|.|||+|.+|..+++.|...|. +++++|.+.-....+...        |-..+....+.+.  +.|+-+..+. 
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~-  101 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE-  101 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES-
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc-
Confidence            556899999999999999999999996 789998765443333321        1111111111121  2343333332 


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCC
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  191 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  191 (359)
                       .....++   ..-...++.-.+||++ .........+.+.+.+.++.++.+..
T Consensus       102 -~~~~~~~---~~~~~~~~~~dvVv~~-~~~~~~~~~l~~~c~~~~ip~i~~~~  150 (529)
T d1yova1         102 -ESPENLL---DNDPSFFCRFTVVVAT-QLPESTSLRLADVLWNSQIPLLICRT  150 (529)
T ss_dssp             -SCHHHHH---HSCGGGGGGCSEEEEE-SCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             -CCchhhh---hhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence             1223333   1111223344566655 44565666677777777777776543

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.65  E-value=0.1  Score=39.91  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cccchhhhhc--ccccccCCCC-----CCcchhHHHHH
Q 018213          242 LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLK--GPSMIESLYP-----TAFPLKHQQKD  310 (359)
Q Consensus       242 l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~-----~~~~~~~~~kd  310 (359)
                      +..|...+.+..++.|+..+++..|-+.+++.....-+    +..++..+++  +..+.++...     ....+.++..-
T Consensus        28 ~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~~vEG~~t  107 (160)
T d1n1ea1          28 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVAT  107 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCSCCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccchHHHHHH
Confidence            34588888889999999999999998776665433322    2233333322  2222222210     01123445566


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018213          311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL  355 (359)
Q Consensus       311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~  355 (359)
                      ...+.++++++++++|+.+++++++.       ++.+...+++.|
T Consensus       108 ~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~L  145 (160)
T d1n1ea1         108 ADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADL  145 (160)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHH
Confidence            78889999999999999999999873       344555555544

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.60  E-value=0.13  Score=43.00  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             CeEEEE--cCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           72 GRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        72 ~~igii--G~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      +.|+||  |.+.||.++|+.|++.|++|.+.+++.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            448888  457899999999999999998866543

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.50  E-value=0.61  Score=39.14  Aligned_cols=119  Identities=12%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCC------
Q 018213          235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTA------  301 (359)
Q Consensus       235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~------  301 (359)
                      .....++.+.+.+....+.++.|.+.+.++      .+++..++.++.+.++ ..|++++...+...++.....      
T Consensus       138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~  217 (297)
T d2pgda1         138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDF  217 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHH
Confidence            446778889999999999999999999875      4789999999999886 457777654433332211111      


Q ss_pred             c--chhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          302 F--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       302 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      +  .+.....+.+.++..+-+.|+|+|.+.+....+......    .-...++...|+
T Consensus       218 ~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~----~lp~~lIQAqRD  271 (297)
T d2pgda1         218 FKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHA----MLPANLIQAQRD  271 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCS----SCTHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccC----CchhHHHHHHHH
Confidence            1  133345556788999999999999999998876654332    223455555543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.43  E-value=0.073  Score=43.52  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +|+|-|.|. |.||.++|+.|++.|++|.+.|++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            588999987 78999999999999999999988654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.41  E-value=0.05  Score=46.08  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             cCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           68 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        68 ~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++++|++-|.|.+   .||.++|+.|++.|++|++.+|++.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            3888999999985   5999999999999999999988653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.053  Score=42.40  Aligned_cols=44  Identities=34%  Similarity=0.383  Sum_probs=36.5

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  115 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~  115 (359)
                      .+|.|.| .|.+|....+.++..|.+|++..+++++.+.+.+.|.
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa   77 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA   77 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc
Confidence            4676765 5999999999999999999999999888776666554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.35  E-value=0.068  Score=43.70  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      |.|||.|..|...|..|++.|++|.++++++..
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            899999999999999999999999999987643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.063  Score=45.96  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|.-|...|..|++.|++|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.04  E-value=0.067  Score=41.45  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcC
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      ..+|.|||.|.+|..+|..|++.|.+|.+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            36799999999999999999999988766543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.73  E-value=0.077  Score=43.32  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      .||-|.|. |.||.++|+.|++.|++|++.||+++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            46878875 899999999999999999999998653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.68  E-value=0.079  Score=43.14  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=29.6

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      |++-|-|. +.||+++|+.|++.|++|++.+|+++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            45556665 889999999999999999999998754

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.16  Score=38.78  Aligned_cols=67  Identities=19%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcC---ChhhHHHHHHHHHCCC-cEEEEcCCccc-----hhHHHhCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGM---GIMGTPMAQNLLKAGC-DVTVWNRTKSK-----CDPLISLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~---G~iG~~ia~~l~~~g~-~V~~~d~~~~~-----~~~~~~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +.+.+|++||=   +++..+++..+..+|. .+.++.+....     .+.+...|  +..+.+++++++++|+|....
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~   79 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR   79 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence            56789999996   6699999999999974 45666543221     12223333  345778999999999998643

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.51  Score=33.78  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCh-----------hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018213           71 PGRIGFLGMGI-----------MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE  139 (359)
Q Consensus        71 ~~~igiiG~G~-----------iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~  139 (359)
                      .++|.|||.|.           .+...++.|++.|+++++.+.+|+.+.          .+.    ..+|-+.+--=..+
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs----------td~----d~aD~lYfeplt~e   69 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS----------TDY----DTSDRLYFEPVTLE   69 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST----------TST----TSSSEEECCCCSHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh----------cCh----hhcCceEEccCCHH
Confidence            47899999985           366678889999999999999997643          121    24676655211344


Q ss_pred             HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213          140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .+.+++       ..=+|..+++..   .....-.+...|.+.|+..++.
T Consensus        70 ~v~~Ii-------~~E~p~~ii~~~---GGQtalnla~~L~~~gv~iLGt  109 (121)
T d1a9xa4          70 DVLEIV-------RIEKPKGVIVQY---GGQTPLKLARALEAAGVPVIGT  109 (121)
T ss_dssp             HHHHHH-------HHHCCSEEECSS---STHHHHTTHHHHHHTTCCBCSS
T ss_pred             HHHHHH-------HHhCCCEEEeeh---hhhhHHHHHHHHHHcCCcEECC
Confidence            555555       233566676644   3344445666677777655443

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=91.60  E-value=1.8  Score=31.81  Aligned_cols=103  Identities=10%  Similarity=0.025  Sum_probs=62.1

Q ss_pred             CeEEEE---cCCh---hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCC-----hhH
Q 018213           72 GRIGFL---GMGI---MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD-----PES  140 (359)
Q Consensus        72 ~~igii---G~G~---iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~-----~~~  140 (359)
                      +||.||   .+|+   |...++..|...|++|.+++-.....+.           ....+.++|.|++..|.     ++.
T Consensus         3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~   71 (152)
T d1e5da1           3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPY   71 (152)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHH
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCch
Confidence            457777   2454   7788899999999999998865432221           12335689999999986     345


Q ss_pred             HHHHhcccccccccCCCCCEE-EeccCC-ChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGY-VDVSTV-DGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~v-i~~s~~-~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ...++   ..+...-.++..+ +-.+.+ .......+.+.+++.|...+.
T Consensus        72 ~~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~  118 (152)
T d1e5da1          72 VAGTL---QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPA  118 (152)
T ss_dssp             HHHHH---HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCS
T ss_pred             hHHHH---HHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEec
Confidence            56665   2222211123322 222222 344456788888888876654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.54  E-value=0.37  Score=37.53  Aligned_cols=38  Identities=13%  Similarity=-0.030  Sum_probs=30.8

Q ss_pred             CCeEEEE--cCChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213           71 PGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  108 (359)
Q Consensus        71 ~~~igii--G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~  108 (359)
                      +.++.|+  |.|.+|....+..+..|.+|++..++++..+
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~   68 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD   68 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence            3568888  6799999999999999999998877665443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.49  E-value=0.17  Score=38.21  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCCeEEEE--cCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           70 LPGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        70 ~~~~igii--G~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      .++.+.|+  |.|.||..+|..|+++|++|++..+.+.-
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            34556565  99999999999999999999999987543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.45  E-value=0.11  Score=39.99  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=26.1

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWN  101 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d  101 (359)
                      ||||=|+|+||+.+.+.+...+.+|...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            69999999999999999988888887765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.40  E-value=0.091  Score=40.02  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      ||.|||.|.+|..+|..|++ +.+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            69999999999999999975 78999998754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.30  E-value=0.088  Score=46.34  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=28.3

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEc
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWN  101 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d  101 (359)
                      ||||.|.|. |-||+.+++.|.+.|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            589999985 9999999999999999999997

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.22  E-value=0.12  Score=37.11  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=28.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~  105 (359)
                      ++++.|||.|.+|..+|..|...|   .+|+++.+.+.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            478999999999999998776654   57999987654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.12  E-value=0.4  Score=39.30  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             EEEE-c-CChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213           74 IGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKSK  106 (359)
Q Consensus        74 igii-G-~G~iG~~ia~~l~~~g~~V~~~d~~~~~  106 (359)
                      ++|| | .+.||.++|+.|++.|++|++.+|+.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            5566 4 5779999999999999999999988654

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.21  Score=38.44  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccch-----hH----HHhCC--CccCCCHHHHhhcCCEEEEeeC
Q 018213           69 ELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DP----LISLG--AKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        69 ~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~~----~~~~g--~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +.+.+|++||-| ++-.+++..+..+|+++.++.+..-..     +.    ..+.|  +..+.++++.+..+|+|.....
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            678999999975 355666777778899999887642211     11    11123  4567899999999999998663

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.11  Score=45.19  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=27.2

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |++-|.| +|-+|+.+++.|.+.|++|++.||.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            3455777 79999999999999999999999854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.80  E-value=0.098  Score=44.90  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             eEEEEcCChhhHHHHHHHH-----HCCCcEEEEcCCcc
Q 018213           73 RIGFLGMGIMGTPMAQNLL-----KAGCDVTVWNRTKS  105 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~-----~~g~~V~~~d~~~~  105 (359)
                      -|.|||.|..|..+|..|+     +.|++|+++++++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            3999999999999999996     57999999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.77  E-value=0.13  Score=42.32  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=32.7

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  109 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~  109 (359)
                      .|.|||.|..|...|..|++.|++|.++++++..-..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            4899999999999999999999999999998754443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.70  E-value=0.072  Score=41.93  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=30.7

Q ss_pred             CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      .++|.|||.|..|..-|..+++.|.+|.++++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4779999999999999999999999999998654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.61  E-value=0.14  Score=43.35  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      ++|-|.|. |-||+.+++.|.+.|++|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            46888875 99999999999999999999998653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.60  E-value=0.15  Score=43.36  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=26.8

Q ss_pred             eEEEEc-CChhhHHHHHHHHHCCCcEEEEcC
Q 018213           73 RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        73 ~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      ||.|.| +|-||+.+++.|.+.|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            587886 599999999999999999999875

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.53  E-value=0.1  Score=40.47  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=23.9

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC---CcEEEEc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWN  101 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d  101 (359)
                      |||||=|+|+||+.+.+.+....   .+|...+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            57999999999999999887543   4566554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.39  E-value=0.21  Score=39.04  Aligned_cols=86  Identities=22%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcE-EEEcCCccchhHHH-hCCCcc-----CCCHHHHhhc-----CCEEEEeeCCh
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLI-SLGAKY-----QPSPDEVAAS-----CDVTFAMLADP  138 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V-~~~d~~~~~~~~~~-~~g~~~-----~~~~~~~~~~-----aDivi~~~p~~  138 (359)
                      .+|.|.| .|.+|+...+.++..|.++ +..+.++++...+. +.|...     .++..+.+++     .|+|+-++. .
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g  110 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-G  110 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-H
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-c
Confidence            5688888 5999999999999999864 44566555544443 334321     2234444433     788887773 4


Q ss_pred             hHHHHHhcccccccccCCCCCEEEecc
Q 018213          139 ESAMDVACGKHGAASGMGPGKGYVDVS  165 (359)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s  165 (359)
                      +.....+       ..++++..++.++
T Consensus       111 ~~~~~~~-------~~l~~~G~iv~~G  130 (187)
T d1vj1a2         111 DISNTVI-------SQMNENSHIILCG  130 (187)
T ss_dssp             HHHHHHH-------TTEEEEEEEEEC-
T ss_pred             hhHHHHh-------hhccccccEEEec
Confidence            3333333       4566666666654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.19  Score=39.23  Aligned_cols=67  Identities=12%  Similarity=0.073  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccch-----h---H-HHhCC--CccCCCHHHHhhcCCEEEEee
Q 018213           69 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----D---P-LISLG--AKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~---~-~~~~g--~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +.+.+|+++|=|  ++..+++..++.+|+++.++.+..-..     +   . ....|  +..+.++++++.++|+|..-+
T Consensus         3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~   82 (183)
T d1duvg2           3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV   82 (183)
T ss_dssp             GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence            456889999954  799999999999999999998732111     1   1 11223  346789999999999998755

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.08  Score=41.46  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      ++++|.|||.|+.|..-|..+++.|.+|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            34679999999999999999999999999998754

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.10  E-value=0.11  Score=42.82  Aligned_cols=38  Identities=21%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             EEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHH
Q 018213           74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  111 (359)
Q Consensus        74 igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~  111 (359)
                      .-|-|. +.||+++|+.|++.|++|.+.+|+.++.+++.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~   41 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE   41 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            445565 56999999999999999999999887766554

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.15  Score=40.56  Aligned_cols=30  Identities=13%  Similarity=0.052  Sum_probs=28.5

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      |.|||.|..|...|..+++.|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            889999999999999999999999999874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.23  E-value=0.2  Score=42.95  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ..+|+|-|.| +|-||+.+++.|.+.|++|++.|+.
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            4567898887 4999999999999999999999863

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=0.2  Score=40.08  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=30.0

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      -|.|||.|.-|...|..+++.|++|.++++.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            389999999999999999999999999997543

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=89.07  E-value=0.39  Score=36.50  Aligned_cols=54  Identities=11%  Similarity=0.096  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213           82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  135 (359)
Q Consensus        82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~  135 (359)
                      +..+++..+..+|+++.++.+..-..+.....++....+++++++++|+|..-+
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            788999999999999999987543323333346788889999999999997533

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.2  Score=42.84  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             CeE-EEEc-CChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           72 GRI-GFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~i-giiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      +|| -|.| .|-||+.+++.|.+.|++|++.||.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            468 4666 599999999999999999999998653

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.81  E-value=0.24  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      +++-|.|. |-+|+.+++.|.+.|++|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            55667774 9999999999999999999999853

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.69  E-value=0.14  Score=39.60  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC----CcEEEEc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWN  101 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d  101 (359)
                      +||||=|+|+||+.+.+.+...+    .+|...+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            68999999999999999987543    4566555

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.55  E-value=0.19  Score=41.78  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhhHHHHHHHHH-CCCcEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~-~g~~V~~~d~~~~  105 (359)
                      .-|.|||.|.-|...|..|++ .|++|.++++.+.
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            459999999999999999986 5999999998754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.44  E-value=0.19  Score=39.92  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|..|...|..+++.|.+|.++++.+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8899999999999999999999999998754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.17  Score=38.77  Aligned_cols=31  Identities=19%  Similarity=0.343  Sum_probs=26.0

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC-CcEEEEcC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNR  102 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~  102 (359)
                      +||||=|+|+||+.+.+.+.... ++|...+-
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            68999999999999999988764 67776664

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.26  Score=36.28  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChhhHHHHHHHH----HCCCcEEEEcCCcc
Q 018213           71 PGRIGFLGMGIMGTPMAQNLL----KAGCDVTVWNRTKS  105 (359)
Q Consensus        71 ~~~igiiG~G~iG~~ia~~l~----~~g~~V~~~d~~~~  105 (359)
                      .++|.|||.|.+|..+|..|.    ..|.+|++..+.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            478999999999999998884    46899999887654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=88.38  E-value=0.097  Score=43.67  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=25.5

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      |||.|.|. |-+|+.+.+.|.+.|+.|.+ +++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~-~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIAL-DVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEE-CTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEE-ECC
Confidence            78999985 99999999999999875554 443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=88.27  E-value=0.17  Score=42.85  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ++||.|.|. |-+|+.+++.|.+.|+.|++.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            368999975 999999999999999998887654

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.94  E-value=3.9  Score=34.05  Aligned_cols=121  Identities=8%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCC----Cc
Q 018213          234 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPT----AF  302 (359)
Q Consensus       234 ~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~----~~  302 (359)
                      ......++.+.+.+..+.+.+++|.+.+.++      .+++..++.++.+.++ ..|.+++...+.........    .+
T Consensus       142 ~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~~f  221 (300)
T d1pgja1         142 SPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCAF  221 (300)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTGGG
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhHHH
Confidence            4557788999999999999999999999876      4689999999999886 45666665433222211111    11


Q ss_pred             c--hhHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213          303 P--LKHQQKD-LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  357 (359)
Q Consensus       303 ~--~~~~~kd-~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  357 (359)
                      .  +.....+ .+.+...+.+.|+|+|.+.+....+......   +.....+++..|+
T Consensus       222 ~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~---~l~~anLIQAqRD  276 (300)
T d1pgja1         222 QTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTP---TLKYGQLVSLQRD  276 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCS---CCTHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc---CCchhHHHHHHHh
Confidence            1  1111122 2445556678899999999988766554322   2223356666554

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.75  E-value=0.0053  Score=45.81  Aligned_cols=30  Identities=7%  Similarity=-0.195  Sum_probs=27.9

Q ss_pred             CCCCCCcccccccCCCCCCcCCCCCCCCCC
Q 018213           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLP   44 (359)
Q Consensus        15 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~   44 (359)
                      +++|++++++|+++|++..+.+.+|+|.|.
T Consensus       100 ~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2         100 AEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            889999999999999999999999999884

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.69  E-value=0.29  Score=37.03  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018213           83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA  136 (359)
Q Consensus        83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p  136 (359)
                      +..++..|.+.|++|..+..-++..+.+.+       .++++++++|+|+++--
T Consensus        29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~DliittGG   75 (155)
T d2ftsa3          29 RSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITSGG   75 (155)
T ss_dssp             HHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEESC
T ss_pred             HHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEecc
Confidence            677888899999998877655555555443       45677788999988653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.27  Score=42.15  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      +||.|.| +|-||+.+++.|.+.|++|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            5798887 599999999999999999999875

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.52  E-value=0.14  Score=44.04  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CCeEEEEc-CChhhHHHHHHHHHCCCcEEEEc
Q 018213           71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN  101 (359)
Q Consensus        71 ~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d  101 (359)
                      +|+|.|.| +|-+|+.+++.|.+.|++|.++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            58999998 69999999999999998765543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.29  Score=37.58  Aligned_cols=30  Identities=17%  Similarity=0.229  Sum_probs=28.1

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      |.|||.|..|...|..+++.|.+|.++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            889999999999999999999999999864

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=1.5  Score=32.70  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHHHCC--CcEEEE
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVW  100 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~~~g--~~V~~~  100 (359)
                      +++|.|+|. |.||+.....+.++.  ++|.+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~L   33 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVAL   33 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEE
Confidence            367999995 999999999998874  666654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.30  E-value=0.31  Score=39.05  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|..|...|..+++.|++|.++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8999999999999999999999999998765

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.19  E-value=1  Score=33.20  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=59.5

Q ss_pred             CeEEEE---cCCh---hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh-----hH
Q 018213           72 GRIGFL---GMGI---MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ES  140 (359)
Q Consensus        72 ~~igii---G~G~---iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~-----~~  140 (359)
                      .||.||   .+|+   |...|++.|...|++|.+++.+......+.        ...+-+.++|.+++..|.-     +.
T Consensus         4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~--------~~~~~l~~~d~iiigspt~~~~~~~~   75 (148)
T d1vmea1           4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAIS--------EILKDIPDSEALIFGVSTYEAEIHPL   75 (148)
T ss_dssp             TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHH--------HHHHHSTTCSEEEEEECEETTEECHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchh--------HhhhhHHHCCEeEEEecccCCccCch
Confidence            567776   3454   788899999999999998875432211111        1122356899999999842     34


Q ss_pred             HHHHhcccccccccCCCCCEEEec-cCC-ChHHHHHHHHHHHhcCCeeec
Q 018213          141 AMDVACGKHGAASGMGPGKGYVDV-STV-DGDTSKLINGHIKATGASFLE  188 (359)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~vi~~-s~~-~~~~~~~l~~~l~~~~~~~~~  188 (359)
                      ....+   ..+...-.++..+.-. +-+ .....+.+.+.++..|..+++
T Consensus        76 ~~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~  122 (148)
T d1vmea1          76 MRFTL---LEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILS  122 (148)
T ss_dssp             HHHHH---HHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEE
T ss_pred             HHHHH---HHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEe
Confidence            44554   3332222234332222 222 223345677777777776654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=87.04  E-value=0.29  Score=40.22  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCc-EEEEcCCccc
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCD-VTVWNRTKSK  106 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~-V~~~d~~~~~  106 (359)
                      .+|-|.| .|.||.++|+.|++.|.+ |+++.|+...
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~   46 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD   46 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccC
Confidence            4688887 589999999999999984 7788887543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.75  E-value=0.27  Score=39.11  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=29.4

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      ..|.|||.|..|...|..+++.|.+|.++++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            34899999999999999999999999999864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.67  E-value=0.33  Score=40.75  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      -|.|||.|..|...|..|++.|.+|+++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.62  E-value=0.13  Score=39.85  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCCcEEE
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGCDVTV   99 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~   99 (359)
                      .+|.|||.|.+|..+|..|.+.|.++.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEE
Confidence            4599999999999999999999876544

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=0.16  Score=42.80  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=23.6

Q ss_pred             CeEEEE-c-CChhhHHHHHHHHHCCCcEEEE
Q 018213           72 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVW  100 (359)
Q Consensus        72 ~~igii-G-~G~iG~~ia~~l~~~g~~V~~~  100 (359)
                      +||.+| | .+.||.++|+.|++.|.+|+.+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            568777 6 5889999999999999875544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.54  E-value=0.21  Score=40.67  Aligned_cols=89  Identities=10%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh----CC--Ccc-CCCHHHH--hhcCCEEEEe-----
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG--AKY-QPSPDEV--AASCDVTFAM-----  134 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g--~~~-~~~~~~~--~~~aDivi~~-----  134 (359)
                      ..+++|.=||||. | .++..|++.|.+|+++|.+++-++.+.+    .+  +.. ..+..++  -+..|+|+..     
T Consensus        36 ~~~~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            4567899999873 2 3566677789999999999875544332    23  221 2344433  1235888752     


Q ss_pred             -eCChhHHHHHhcccccccccCCCCCEEE
Q 018213          135 -LADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       135 -~p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                       ++.+.+...++   +.+...|++|..+|
T Consensus       114 ~~~~~~~~~~~l---~~~~~~LkpgG~~i  139 (246)
T d1y8ca_         114 YIIDSDDLKKYF---KAVSNHLKEGGVFI  139 (246)
T ss_dssp             GCCSHHHHHHHH---HHHHTTEEEEEEEE
T ss_pred             ccCCHHHHHHHH---HHHHHhCCCCeEEE
Confidence             34456667777   77778888876544

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.3  Score=40.96  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHC----CC-------cEEEEcCCc----cc---hhHHH----hCCC-ccCCCHHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKA----GC-------DVTVWNRTK----SK---CDPLI----SLGA-KYQPSPDEVA  125 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~----g~-------~V~~~d~~~----~~---~~~~~----~~g~-~~~~~~~~~~  125 (359)
                      ++..||.|.|+|.-|..+++.+...    |.       +++++|+..    ++   ....+    .... ....++.|++
T Consensus        23 l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i  102 (294)
T d1pj3a1          23 ISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV  102 (294)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH
T ss_pred             HHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHH
Confidence            5667899999999999999987643    42       588888742    11   11111    1111 1234788887


Q ss_pred             h--cCCEEEEee-CChhHHHHHhcccccccccCCCCCEEEeccCCChHH
Q 018213          126 A--SCDVTFAML-ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  171 (359)
Q Consensus       126 ~--~aDivi~~~-p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  171 (359)
                      +  +.|++|-+. +..--+++++   +.+ ..+.+.-+|.-+|+-.+..
T Consensus       103 ~~~kptvliG~S~~~g~ft~evi---~~M-a~~~~~PIIFaLSNPt~~~  147 (294)
T d1pj3a1         103 NILKPSTIIGVAGAGRLFTPDVI---RAM-ASINERPVIFALSNPTAQA  147 (294)
T ss_dssp             HHHCCSEEEECCCSSCCSCHHHH---HHH-HHHCSSCEEEECCSSGGGC
T ss_pred             HhcCCceEEEecCCCCcCCHHHH---HHH-HhcCCCcEEEEccCCCCcC
Confidence            6  678777665 3233456666   433 3467888999888876654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.39  Score=37.99  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      +.|||.|..|...|..+++.|.+|.+.++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            889999999999999999999999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.91  E-value=0.34  Score=38.82  Aligned_cols=31  Identities=23%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|.-|...|..+++.|++|.+++..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8899999999999999999999999998654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.86  E-value=0.35  Score=37.04  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             eEEEEcCChhhHHHHHHHHHC---CCcEEEEc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKA---GCDVTVWN  101 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~---g~~V~~~d  101 (359)
                      ||||=|+|+||+.+.+.+...   +.+|...+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            699999999999999998753   36776665

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=1.1  Score=37.95  Aligned_cols=67  Identities=19%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             cCCCCeEEEEcC---ChhhHHHHHHHHHCC-CcEEEEcCCccc-----hhHHHhCC--CccCCCHHHHhhcCCEEEEe
Q 018213           68 DELPGRIGFLGM---GIMGTPMAQNLLKAG-CDVTVWNRTKSK-----CDPLISLG--AKYQPSPDEVAASCDVTFAM  134 (359)
Q Consensus        68 ~~~~~~igiiG~---G~iG~~ia~~l~~~g-~~V~~~d~~~~~-----~~~~~~~g--~~~~~~~~~~~~~aDivi~~  134 (359)
                      .+++.+|+++|-   +++..+++..+..+| +++.++.+..-.     .+...+.+  +....+++++++++|+|...
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~  228 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT  228 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence            478899999997   788899999888885 788888763221     11222233  34567899999999998754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=85.80  E-value=0.58  Score=35.80  Aligned_cols=30  Identities=20%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             CeEEEEcCChhhHHHHHHHHHC-CCcEEEEc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  101 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d  101 (359)
                      .||||=|+|+||+.+.+.+... ..+|...+
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            5799999999999999987654 47777664

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.76  E-value=4.6  Score=28.83  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChh-------HHHHHhcccccccc
Q 018213           81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE-------SAMDVACGKHGAAS  153 (359)
Q Consensus        81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~-------~~~~~~~~~~~~~~  153 (359)
                      .+...+++.+...|++|.+++.+..              +.+++ .++|.+++.+|...       .....+   +.+..
T Consensus        14 ~vA~~ia~~l~~~g~~v~~~~~~~~--------------~~~~l-~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~   75 (138)
T d5nula_          14 KMAELIAKGIIESGKDVNTINVSDV--------------NIDEL-LNEDILILGCSAMTDEVLEESEFEPFI---EEIST   75 (138)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEGGGC--------------CHHHH-TTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHhcCCcceecccccc--------------ccccc-ccCCeEEEEEeccCCCCCChHHHHHHH---HHhCc
Confidence            3678888889899999988875421              33443 57999999998531       233333   22222


Q ss_pred             cCC--CCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHh
Q 018213          154 GMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM  224 (359)
Q Consensus       154 ~l~--~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~l  224 (359)
                      .++  +-.++...+.+.....+.+.+.+...|...+..+.             .+-+.+.+..++..++-+.+
T Consensus        76 ~~~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~-------------~~~~~p~e~~~~~~~~g~~l  135 (138)
T d5nula_          76 KISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPL-------------IVQNEPDEAEQDCIEFGKKI  135 (138)
T ss_dssp             GCTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCE-------------EEESSCGGGHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcE-------------EECCCCcHHHHHHHHHHHHH
Confidence            232  22233333333345556777888888877665331             12223345556666665554

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.67  E-value=3.2  Score=31.82  Aligned_cols=100  Identities=10%  Similarity=0.036  Sum_probs=59.3

Q ss_pred             CeEEEE---cCC---hhhHHHHHHHHH-CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh-----h
Q 018213           72 GRIGFL---GMG---IMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----E  139 (359)
Q Consensus        72 ~~igii---G~G---~iG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~-----~  139 (359)
                      +||.||   ..|   .|..++++.+.. .|.+|.+++...              .+.+++ .++|.|++.+|..     .
T Consensus         2 ~kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~--------------~~~~dl-~~~d~iiiGsPty~g~~~~   66 (184)
T d2arka1           2 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDE--------------ATKEDV-LWADGLAVGSPTNMGLVSW   66 (184)
T ss_dssp             EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTT--------------CCHHHH-HHCSEEEEEEECBTTBCCH
T ss_pred             CeEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeeccc--------------ccccch-hhCcEEEEecCccccccCH
Confidence            346666   233   477788888876 688998887542              134454 5899999999862     4


Q ss_pred             HHHHHhccccccc----ccCC--CCCEEEeccC-C-C-hHHHHHHHHHHHhcCCeeecC
Q 018213          140 SAMDVACGKHGAA----SGMG--PGKGYVDVST-V-D-GDTSKLINGHIKATGASFLEA  189 (359)
Q Consensus       140 ~~~~~~~~~~~~~----~~l~--~~~~vi~~s~-~-~-~~~~~~l~~~l~~~~~~~~~~  189 (359)
                      .++.++   +.+.    ..++  +...+.+.+. + . ......+.+.+...|..+++.
T Consensus        67 ~~~~fl---d~~~~~~~~~l~gK~~a~f~s~g~~~gG~e~al~~~~~~l~~~G~~vvg~  122 (184)
T d2arka1          67 KMKRFF---DDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGV  122 (184)
T ss_dssp             HHHHHH---HHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCE
T ss_pred             HHHHHH---HHHHHHHHHHhCCeEEEEEEccCCCCccHHHHHHHhhhHhhhCCCEEecc
Confidence            566666   2221    1222  2234444322 1 1 223456777777888887763

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.51  Score=34.15  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~  105 (359)
                      -++++|+|||.|+-+...|..|.+..-+|+++-|.++
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            4679999999999999999999999999999987653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=85.42  E-value=0.52  Score=38.62  Aligned_cols=108  Identities=19%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCCh--hhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----C----Cc-cCCCHHHHhh--cCCEEEEee
Q 018213           69 ELPGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G----AK-YQPSPDEVAA--SCDVTFAML  135 (359)
Q Consensus        69 ~~~~~igiiG~G~--iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g----~~-~~~~~~~~~~--~aDivi~~~  135 (359)
                      -.+++|.=+|+|.  +...+|+.+... -+|+.+|++++..+...+.    +    +. ...+..+.+.  ..|.|++.+
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~  162 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI  162 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence            3458899998754  555566665443 4799999998766554431    1    11 1123333332  369999999


Q ss_pred             CChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC
Q 018213          136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  184 (359)
Q Consensus       136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  184 (359)
                      |.+..   ++   +.+...|++|..++..+. .......+.+.+++.|.
T Consensus       163 p~p~~---~l---~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         163 PDPWN---HV---QKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             SCGGG---SH---HHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred             CchHH---HH---HHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence            87754   34   445567888887774322 23445667777777664

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=85.29  E-value=0.32  Score=38.21  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=26.7

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCCC---cEEEEcCCcc
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKS  105 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d~~~~  105 (359)
                      +||-|||.|.-|..++.++...|.   +.++.|.+.+
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~   37 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQ   37 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHH
Confidence            479999999999999999988764   4456666543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.89  E-value=0.58  Score=36.58  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             CeEEEEcCChhhHHHHHHHHHCC
Q 018213           72 GRIGFLGMGIMGTPMAQNLLKAG   94 (359)
Q Consensus        72 ~~igiiG~G~iG~~ia~~l~~~g   94 (359)
                      +||||=|+|+||+.+.+.+...+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~   25 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDG   25 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCChHHHHHHHHHHHcC
Confidence            68999999999999999887654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.69  E-value=0.37  Score=37.75  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH----hCCCcc----CCCHHHHh--hcCCEEEEeeCC-
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI----SLGAKY----QPSPDEVA--ASCDVTFAMLAD-  137 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~----~~g~~~----~~~~~~~~--~~aDivi~~~p~-  137 (359)
                      +.+.+|.=||+| .|. .+..|++.|++|+++|.++..++...    +.++..    ..+..+..  ..-|+|+..... 
T Consensus        29 ~~~grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          29 VAPGRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             SCSCEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             CCCCcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeee
Confidence            455689999998 454 55567788999999999887655432    223321    12222211  233777653311 


Q ss_pred             ---hhHHHHHhcccccccccCCCCCEEEe
Q 018213          138 ---PESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus       138 ---~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                         +++...++   +++...+++|.+++-
T Consensus       107 ~~~~~~~~~~l---~~~~~~L~pgG~~~~  132 (198)
T d2i6ga1         107 FLEAQTIPGLI---ANMQRCTKPGGYNLI  132 (198)
T ss_dssp             GSCTTHHHHHH---HHHHHTEEEEEEEEE
T ss_pred             cCCHHHHHHHH---HHHHHHcCCCcEEEE
Confidence               23445566   666667777765443

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.52  E-value=0.37  Score=38.34  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=28.5

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCC---cEEEEcCCcc
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKS  105 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d~~~~  105 (359)
                      ....||.|||.|.-|..++.++...|.   +.+++|.+.+
T Consensus        13 ~~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~   52 (209)
T d2vapa1          13 QTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQ   52 (209)
T ss_dssp             TTCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHH
T ss_pred             ccCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHH
Confidence            345789999999999999999988774   3455565543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.43  E-value=0.52  Score=37.17  Aligned_cols=30  Identities=23%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      |.|||.|..|...|..+++.|.+|.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            889999999999999999999999999874

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.28  E-value=0.75  Score=33.23  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCChh-----------hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018213           69 ELPGRIGFLGMGIM-----------GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD  137 (359)
Q Consensus        69 ~~~~~igiiG~G~i-----------G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~  137 (359)
                      ...+||.|||.|.+           +...++.|++.|++++..+.+|+.+.          .+.    ..+|-+.+--=.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs----------td~----d~aD~lYfePlt   70 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM----------TDP----EMADATYIEPIH   70 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG----------GCG----GGSSEEECSCCC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh----------cCh----hhcceeeeecCC
Confidence            34588999999863           66678889999999999999997643          122    246766652213


Q ss_pred             hhHHHHHhcccccccccCCCCCEEEe
Q 018213          138 PESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                      .+.+.+++       ..=++..++..
T Consensus        71 ~e~v~~Ii-------~~E~pd~il~~   89 (127)
T d1a9xa3          71 WEVVRKII-------EKERPDAVLPT   89 (127)
T ss_dssp             HHHHHHHH-------HHHCCSEEECS
T ss_pred             HHHHHHHH-------HHhCcCCeEEE
Confidence            45566666       22356666653

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=1.5  Score=34.87  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             CCeEEEE-cC-------ChhhHHHHHHHHHCCCcEEEEcCCccchhHH---HhC---------------------CCccC
Q 018213           71 PGRIGFL-GM-------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL---ISL---------------------GAKYQ  118 (359)
Q Consensus        71 ~~~igii-G~-------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~---~~~---------------------g~~~~  118 (359)
                      +|||.|| |-       ..+...+...+.+.|++|.+.|-........   ...                     .....
T Consensus         2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (230)
T d2qwxa1           2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA   81 (230)
T ss_dssp             CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccccc
Confidence            5777777 32       4456667777888999999887543221100   000                     00111


Q ss_pred             C---CHHHHhhcCCEEEEeeCC-----hhHHHHHh
Q 018213          119 P---SPDEVAASCDVTFAMLAD-----PESAMDVA  145 (359)
Q Consensus       119 ~---~~~~~~~~aDivi~~~p~-----~~~~~~~~  145 (359)
                      +   ...+.+..||.||+..|.     |..++..+
T Consensus        82 ~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~i  116 (230)
T d2qwxa1          82 SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWM  116 (230)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHH
Confidence            1   223456789999999984     46777776

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.92  E-value=0.81  Score=34.28  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK  104 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~  104 (359)
                      .+++|.|||.|+.|.-.|..+.+.|.+ |+++.|.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            346799999999999999999999865 76766643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=83.77  E-value=0.49  Score=40.02  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      -|.|||.|.-|...|..|++.|++|+++++.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999765

>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.58  E-value=4  Score=30.88  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc--cchhhhhc--ccccccCCCCCCcchhHHHHHH----HHHH
Q 018213          244 VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI--SAPMYSLK--GPSMIESLYPTAFPLKHQQKDL----RLAL  315 (359)
Q Consensus       244 ~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~--~s~~~~~~--~~~~~~~~~~~~~~~~~~~kd~----~~~~  315 (359)
                      .......+.++=.|-++++++.|++...+.+.....-+  .+.+.+..  .+....-.....+.-..+..|+    -...
T Consensus        40 tp~v~~~l~alD~Er~aIa~alg~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~P~~~~hRYi~EDvp~GLv~~~  119 (172)
T d1bg6a1          40 TPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFEDVSTGLVPLS  119 (172)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcCCCcchHHHHHhcCccccCCCCCCCccccceeccccchHHHHH
Confidence            34455556666778888888888865444433332111  01111110  1111100001123334556665    4568


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHC------------CCCCccHHHHHHHH
Q 018213          316 GLAESVSQSTPIAAAANELYKVAKSH------------GLSDEDFSAVIEAL  355 (359)
Q Consensus       316 ~~a~~~g~~~p~~~~~~~~~~~a~~~------------g~~~~d~~~~~~~~  355 (359)
                      .+++..|+++|+++.+..+......+            |.++.+...+.+.+
T Consensus       120 ~la~~~gV~tP~i~~ii~~a~~~~g~d~~~~Grtl~~lgl~~~s~~~l~~~~  171 (172)
T d1bg6a1         120 ELGRAVNVPTPLIDAVLDLISSLIDTDFRKEGRTLEKLGLSGLTAAGIRSAV  171 (172)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHTTCCHHHHSCCTTTTTCTTCCHHHHHHHH
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHCcCHHhcCCCHHHCCCCCCCHHHHHHHh
Confidence            89999999999999999888877654            45677777776654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.44  E-value=0.51  Score=40.43  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=27.7

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      +.|||.|.-|..+|.+|++.|++|++..+
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            88999999999999999999999999875

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.02  E-value=0.67  Score=40.18  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=27.4

Q ss_pred             CCeEEEEcC-ChhhHHHHHHHH-HCCCcEEEEcC
Q 018213           71 PGRIGFLGM-GIMGTPMAQNLL-KAGCDVTVWNR  102 (359)
Q Consensus        71 ~~~igiiG~-G~iG~~ia~~l~-~~g~~V~~~d~  102 (359)
                      .|||-|.|. |-||+.+++.|. ..|++|++.|+
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            489998875 999999999886 47999999874

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.87  E-value=0.63  Score=40.62  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             eEEEEcCChhhHHHHHHHHH------CCCcEEEEcCCcc
Q 018213           73 RIGFLGMGIMGTPMAQNLLK------AGCDVTVWNRTKS  105 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~------~g~~V~~~d~~~~  105 (359)
                      -|.|||.|.-|.+.|..|++      .|++|.++++...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            59999999999999999987      8999999998653

>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Putative arsenical resistance protein
species: Shigella flexneri [TaxId: 623]

Probab=82.86  E-value=7.9  Score=30.74  Aligned_cols=75  Identities=11%  Similarity=0.035  Sum_probs=43.2

Q ss_pred             CCeEEEE-cC---ChhhHH----HHHHHHHCCCcEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCC----
Q 018213           71 PGRIGFL-GM---GIMGTP----MAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLAD----  137 (359)
Q Consensus        71 ~~~igii-G~---G~iG~~----ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~----  137 (359)
                      ..||.+| |.   +.....    +++.+.+.|++|.++|-..-....... .....+..+.+.+.+||-||+++|.    
T Consensus        34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y~~~  113 (233)
T d2fzva1          34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ  113 (233)
T ss_dssp             CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEccccccC
Confidence            4566666 54   333334    455667789999999864322211100 0111122344667889999999986    


Q ss_pred             -hhHHHHHh
Q 018213          138 -PESAMDVA  145 (359)
Q Consensus       138 -~~~~~~~~  145 (359)
                       +..++.++
T Consensus       114 ~~~~lKn~i  122 (233)
T d2fzva1         114 ITSVMKAQI  122 (233)
T ss_dssp             ECHHHHHHH
T ss_pred             cHHHHHhhH
Confidence             35677776

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.19  E-value=0.68  Score=39.50  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=27.0

Q ss_pred             CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcC
Q 018213           72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      |.|.|.| .|-||+.+++.|.+.|++|+++|+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            3477776 599999999999999999999975

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.12  E-value=0.7  Score=37.70  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  103 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~  103 (359)
                      +.|||.|.-|...|..+++.|.+|.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            789999999999999999999999999874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=82.07  E-value=0.61  Score=40.08  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=27.6

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcC
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      |-|||.|.-|..+|.+|++.|++|.+..+
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            78999999999999999999999999976

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.82  E-value=1.1  Score=35.86  Aligned_cols=91  Identities=13%  Similarity=0.108  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCC--hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----C-Ccc----CCCHH---HHhhcCCEEEEe
Q 018213           69 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G-AKY----QPSPD---EVAASCDVTFAM  134 (359)
Q Consensus        69 ~~~~~igiiG~G--~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g-~~~----~~~~~---~~~~~aDivi~~  134 (359)
                      ..+++|.=+|+|  ..-..+|+..-. +-.|+++|.++...+.+.+.    + +..    ....+   ......|+|+..
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~-~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence            456899999875  455555555433 34799999998776655432    1 110    11111   223456888888


Q ss_pred             eCChhHHHHHhcccccccccCCCCCEEEe
Q 018213          135 LADPESAMDVACGKHGAASGMGPGKGYVD  163 (359)
Q Consensus       135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~  163 (359)
                      ++.+.+...++   +++...+++|..++-
T Consensus       151 ~~~~~~~~~~l---~~~~~~LkpgG~lvi  176 (227)
T d1g8aa_         151 VAQPTQAKILI---DNAEVYLKRGGYGMI  176 (227)
T ss_dssp             CCSTTHHHHHH---HHHHHHEEEEEEEEE
T ss_pred             ccccchHHHHH---HHHHHhcccCCeEEE
Confidence            87777777777   677777888876553

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.62  E-value=0.46  Score=40.09  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhhHHHHHHHHH--CCCcEEEEcCCcc
Q 018213           70 LPGRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKS  105 (359)
Q Consensus        70 ~~~~igiiG~G~iG~~ia~~l~~--~g~~V~~~d~~~~  105 (359)
                      ....|.|||.|.-|...|..|++  .|++|.++++++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            34569999999999999999985  4999999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.30  E-value=0.64  Score=36.60  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             EEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213           74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  104 (359)
Q Consensus        74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~  104 (359)
                      |.|||.|.-|..-|..+++.|.+|.++++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            8899999999999999999999999998754

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.07  E-value=6  Score=29.30  Aligned_cols=94  Identities=13%  Similarity=0.037  Sum_probs=49.1

Q ss_pred             CeEEEE---cCChhhHHH-HHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHH-hhcCCEEEEeeCChhHH---
Q 018213           72 GRIGFL---GMGIMGTPM-AQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEV-AASCDVTFAMLADPESA---  141 (359)
Q Consensus        72 ~~igii---G~G~iG~~i-a~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~-~~~aDivi~~~p~~~~~---  141 (359)
                      |||+|+   |+-.+=... ...|.+.|++|.++..+...+..  ..|....  .+++++ ..+.|+|++.-......   
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~--~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~   78 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITG--KHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRL   78 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEEC--TTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEee--cCCcEEeccccHHHcCcccccEEEEecccchhhhcc
Confidence            456666   444443222 34678899999998876544321  2344332  234443 34678888765322211   


Q ss_pred             -HHHhcccccccccCCCCCEEEeccCCChH
Q 018213          142 -MDVACGKHGAASGMGPGKGYVDVSTVDGD  170 (359)
Q Consensus       142 -~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  170 (359)
                       +.++   +-+......++.+.-++.+...
T Consensus        79 ~~~~~---~~l~~~~~~~k~i~aiC~G~~~  105 (166)
T d1g2ia_          79 NEKAV---SIARKMFSEGKPVASICHGPQI  105 (166)
T ss_dssp             CHHHH---HHHHHHHHTTCCEEEETTTTHH
T ss_pred             ChHHH---HHHHHHHhcCCeeeeccccchh
Confidence             1111   1122233467777777666654

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.87  E-value=1.4  Score=34.34  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEc
Q 018213           69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWN  101 (359)
Q Consensus        69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d  101 (359)
                      .+.||||||-+ |++ ..+.+.|.+.|+++.+.+
T Consensus         4 ~~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~   36 (202)
T d1q7ra_           4 QSNMKIGVLGLQGAV-REHVRAIEACGAEAVIVK   36 (202)
T ss_dssp             CCCCEEEEESCGGGC-HHHHHHHHHTTCEEEEEC
T ss_pred             ccCCEEEEEECCCCH-HHHHHHHHHCCCcEEEEC
Confidence            45699999999 998 667799999999988764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.70  E-value=0.74  Score=39.65  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=26.0

Q ss_pred             CeEEEEcC-ChhhHHHHHHHHHCCCcE-EEEcC
Q 018213           72 GRIGFLGM-GIMGTPMAQNLLKAGCDV-TVWNR  102 (359)
Q Consensus        72 ~~igiiG~-G~iG~~ia~~l~~~g~~V-~~~d~  102 (359)
                      |||.|.|. |-||+.+++.|.+.|++| .+.|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            68999975 999999999999999975 45554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=0.43  Score=38.32  Aligned_cols=42  Identities=12%  Similarity=-0.003  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  112 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~  112 (359)
                      ..+.+|..+|||. | ..+..|++.|++|+++|.++..++.+.+
T Consensus        44 ~~~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            4567999999998 4 5577788899999999999877765543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.64  E-value=0.46  Score=38.45  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh----CCCc--c-CCCHHHHh--hcCCEEEEee----
Q 018213           69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK--Y-QPSPDEVA--ASCDVTFAML----  135 (359)
Q Consensus        69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----~g~~--~-~~~~~~~~--~~aDivi~~~----  135 (359)
                      ...++|.=||||. |.. +..|++.|++|+++|.+++-++...+    .+..  . ..+.+++-  ...|+|++..    
T Consensus        40 ~~~~~iLDiGcGt-G~~-~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGT-GIP-TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTT-CHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCC-Ccc-chhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhh
Confidence            3457899999997 543 55677889999999999865554332    2221  1 22333321  2357776642    


Q ss_pred             -CChhHHHHHhcccccccccCCCCCEEE
Q 018213          136 -ADPESAMDVACGKHGAASGMGPGKGYV  162 (359)
Q Consensus       136 -p~~~~~~~~~~~~~~~~~~l~~~~~vi  162 (359)
                       ...++...++   +++...|+||.+++
T Consensus       118 ~~~~~~~~~~L---~~~~~~LkpgG~li  142 (251)
T d1wzna1         118 YFDEEDLRKLF---SKVAEALKPGGVFI  142 (251)
T ss_dssp             GSCHHHHHHHH---HHHHHHEEEEEEEE
T ss_pred             cCChHHHHHHH---HHHHHHcCCCcEEE
Confidence             2234556666   67777788876544

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=80.60  E-value=1.4  Score=35.10  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.0

Q ss_pred             EcCChhhHHHHHHHHHCCCcEEEEcC
Q 018213           77 LGMGIMGTPMAQNLLKAGCDVTVWNR  102 (359)
Q Consensus        77 iG~G~iG~~ia~~l~~~g~~V~~~d~  102 (359)
                      --.|.||.++|+.+...|++|+++.-
T Consensus        29 ~SSGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_          29 HSSGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             CCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCcHHHHHHHHHHHHHcCCchhhhhc
Confidence            35799999999999999999998754

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.42  E-value=1.1  Score=34.06  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             eEEEEcCChhhHHHHHHHHHC-CCcEEEEc
Q 018213           73 RIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  101 (359)
Q Consensus        73 ~igiiG~G~iG~~ia~~l~~~-g~~V~~~d  101 (359)
                      ||||=|+|+||+.+.+.+... ..+|...+
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN   31 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN   31 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence            699999999999999998765 46777664