Citrus Sinensis ID: 018243
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| O07051 | 338 | L-allo-threonine aldolase | N/A | no | 0.927 | 0.985 | 0.469 | 3e-80 | |
| Q21890 | 413 | Uncharacterized protein R | yes | no | 0.949 | 0.825 | 0.422 | 7e-70 | |
| P58319 | 333 | Low specificity L-threoni | N/A | no | 0.877 | 0.945 | 0.427 | 4e-68 | |
| P75823 | 333 | Low specificity L-threoni | N/A | no | 0.877 | 0.945 | 0.424 | 8e-68 | |
| O13940 | 376 | Probable low-specificity | yes | no | 0.866 | 0.827 | 0.381 | 8e-47 | |
| O13427 | 374 | Low-specificity L-threoni | N/A | no | 0.896 | 0.860 | 0.325 | 1e-43 | |
| O74267 | 382 | Low-specificity L-threoni | yes | no | 0.944 | 0.887 | 0.337 | 5e-43 | |
| P37303 | 387 | Low specificity L-threoni | yes | no | 0.899 | 0.834 | 0.347 | 6e-43 | |
| Q9UW18 | 389 | Alanine racemase TOXG OS= | N/A | no | 0.947 | 0.874 | 0.326 | 2e-33 | |
| Q9HTF1 | 346 | Low specificity L-threoni | no | no | 0.788 | 0.817 | 0.249 | 3e-06 |
| >sp|O07051|LTAA_AERJA L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 224/345 (64%), Gaps = 12/345 (3%)
Query: 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
R +DLRSDTVT+PT+AMR M AEV DDV DP LE A ++GKEA LFVPSGT
Sbjct: 2 RYIDLRSDTVTQPTDAMRQCMLHAEVGDDVYGEDPGVNALEAYGADLLGKEAALFVPSGT 61
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
M NL++V+ HC+ RG +LG +HI+ YE G + +G V + V DG++ + + A
Sbjct: 62 MSNLLAVMSHCQ-RGEGAVLGSAAHIYRYEAQGSAVLGSVALQPVPMQADGSLALADVRA 120
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
AI ++ + TRL+CLENTH G+ L + Y + E+ +HGL+LH+DGAR+FNA
Sbjct: 121 AI--APDDVHFTPTRLVCLENTH---NGKVLPLPYLREMRELVDEHGLQLHLDGARLFNA 175
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243
VA G VR LV DS S+CLSKGLGAPVGS++VGS FI +ARRLRK +GGGMRQ G+
Sbjct: 176 VVASGHTVRELVAPFDSVSICLSKGLGAPVGSLLVGSHAFIARARRLRKMVGGGMRQAGI 235
Query: 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303
L A L ALQ++V+ + D DH++A+ LAEGL L G+R+D+ V+TN+V+ ++T
Sbjct: 236 LAQAGLFALQQHVVRLAD-DHRRARQLAEGLAALPGIRLDLAQVQTNMVFLQLTSGE--- 291
Query: 304 AACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348
+A LL ++ G+L +R+V H QI +D+ + F +
Sbjct: 292 SAPLLAFMKARGILF--SGYGELRLVTHLQIHDDDIEEVIDAFTE 334
|
Stereospecifically catalyzes the interconversion of L-allo-threonine and glycine. Aeromonas jandaei (taxid: 650) EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 4EC: 9 |
| >sp|Q21890|YF64_CAEEL Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 215/348 (61%), Gaps = 7/348 (2%)
Query: 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM 64
++DLRSDTVT P+ MR AMA A V DDV D T RLE A++ GKEAGLFV SGTM
Sbjct: 66 SIDLRSDTVTVPSVEMRRAMAEAIVGDDVYGEDTTTNRLEQRCAELFGKEAGLFVTSGTM 125
Query: 65 GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
GNL++++ HC+ RG E+I+G +HIH +E G + G+ T++ DGTMD++ IE A
Sbjct: 126 GNLLAIMAHCQ-RGEEIIVGRYNHIHRWEQGNYAQFAGISATTLEVKPDGTMDLNDIEQA 184
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
IR + P ++LIC+ENTH GG+ L +E+ SV ++A++ LK+H+DGARI+NAA
Sbjct: 185 IRVKDCHM--PASKLICIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGARIYNAA 242
Query: 185 VALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVL 244
VA V ++ AD+ +C SKGLGAPVGS++VG K+FI +AR RK LGGG RQ G+L
Sbjct: 243 VASNCSVSKIASFADTVQMCFSKGLGAPVGSIVVGPKDFIDRARHSRKALGGGWRQSGIL 302
Query: 245 CAAALVALQENVLVMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVETNIVYFEITE-DSK 301
AAA ++ + DH++AK LA +N + R V A E +I + +
Sbjct: 303 -AAAAHIALDHADATIRADHERAKTLARMINDATPEEFRTKVFAAEKDITNMVLVHCQNG 361
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349
+ L ++H +L M + R+R+V++ +S ++ + ++K
Sbjct: 362 VTVQQLTDFFQKHDILAMTFDARRIRMVLNWNVSDENLETIVEVYKKF 409
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|P58319|LTAE_ECO57 Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 206/330 (62%), Gaps = 15/330 (4%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVT+P+ AM AM +A V DDV DPT L+ A++ GKEA +F+P+GT
Sbjct: 2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQA 61
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
NL+++L HCE RG E I+G +H +++E GG + +G + P+ + DGT+ +D + I
Sbjct: 62 NLVALLSHCE-RGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKI 120
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
+ +I + T+L+ LENTH G+ L EY E ++ L LH+DGARIFNA V
Sbjct: 121 K--PDDIHFARTKLLSLENTH---NGKVLPREYLKDAWEFTRERNLALHVDGARIFNAVV 175
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
A G ++ L Q DS ++CLSKGLG PVGS++VG++++IK+A R RK GGGMRQ G+L
Sbjct: 176 AYGSELKELTQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILA 235
Query: 246 AAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
AA + AL+ NV L DH A +AE QL+ DV +TN+++ + E++ AA
Sbjct: 236 AAGMYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEEN---AA 288
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQIS 335
L + ++ VL+ +S VR+V H +S
Sbjct: 289 ALGEYMKARNVLI--NASPIVRLVTHLDVS 316
|
Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. L-threo-phenylserine and L-erythro-phenylserine are also good substrates. Escherichia coli O157:H7 (taxid: 83334) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|P75823|LTAE_ECOLI Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 206/330 (62%), Gaps = 15/330 (4%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVT+P+ AM AM +A V DDV DPT L+ A++ GKEA +F+P+GT
Sbjct: 2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQA 61
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
NL+++L HCE RG E I+G +H +++E GG + +G + P+ + DGT+ +D + I
Sbjct: 62 NLVALLSHCE-RGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKI 120
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
+ +I + T+L+ LENTH G+ L EY E ++ L LH+DGARIFNA V
Sbjct: 121 K--PDDIHFARTKLLSLENTH---NGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVV 175
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
A G ++ + Q DS ++CLSKGLG PVGS++VG++++IK+A R RK GGGMRQ G+L
Sbjct: 176 AYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILA 235
Query: 246 AAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
AA + AL+ NV L DH A +AE QL+ DV +TN+++ + E++ AA
Sbjct: 236 AAGIYALKNNV-ARLQEDHDNAAWMAE---QLREAGADVMRQDTNMLFVRVGEEN---AA 288
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQIS 335
L + ++ VL+ +S VR+V H +S
Sbjct: 289 ALGEYMKARNVLI--NASPIVRLVTHLDVS 316
|
Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. L-threo-phenylserine and L-erythro-phenylserine are also good substrates. Escherichia coli (strain K12) (taxid: 83333) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|O13940|GLY1_SCHPO Probable low-specificity L-threonine aldolase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gly1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 184/338 (54%), Gaps = 27/338 (7%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
D RSDT+T PT+ MR M A D V D +LE +AK+ GKEA LFV SGT GN
Sbjct: 30 DFRSDTLTVPTDEMRRIMYEASDGDCVYEEDEDTRKLEVYVAKLTGKEAALFVTSGTQGN 89
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYENG--GISTIGGVHPRTVKNNQDGT---MDIDLI 121
+ + H +I D +HI+ +E G G+ T V P + KNN T ++ LI
Sbjct: 90 QLCIRSHLHQPPHSIICDDRAHIYNWEAGAIGLFTQAIVRPISPKNNVYITAEEIENKLI 149
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181
+I + T LICLENT G + ++ + +AK H + LH DGAR++
Sbjct: 150 LG------NDIHFSPTGLICLENT---IKGAVVPLDEVARISGLAKAHKIPLHCDGARLW 200
Query: 182 NAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQV 241
+AAVA V ++ DS S+CLSKGL APVGS+IVG ++FI KA+ RK GGG+RQ
Sbjct: 201 DAAVASNVSIKEYCSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAKAKWFRKAYGGGLRQS 260
Query: 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301
G+L AA L ++Q N +L HK A +AE L G+ ++V ++N+V +
Sbjct: 261 GMLAAAGLYSIQHN-FPLLKQVHKYAIEVAEYAESL-GIELEV-PTQSNMVTL-----AN 312
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339
+ A L + ++ G+++M RIV H QI+ + V
Sbjct: 313 INVAILCDEAKKSGIILMGP-----RIVFHIQITPDAV 345
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|O13427|GLY1_CANAX Low-specificity L-threonine aldolase OS=Candida albicans GN=GLY1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 185/347 (53%), Gaps = 25/347 (7%)
Query: 7 DLRSDTVTKPTEAM-RAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+ RSDT T PT AM +A D V D T RLE++M ++ GK A LF SGTM
Sbjct: 14 EFRSDTFTVPTRAMVEDGFMNATFGDSVYQEDETTLRLESKMCEITGKPAALFCVSGTMS 73
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGG--VHPRTVKNNQDGTMDIDLIEA 123
N I + + ++ +H+ ++E GG++T+ VHP N T + D++
Sbjct: 74 NQIGLRANLVQPPYSILCDYRAHVFLHEAGGLATLSQAMVHPVRPSNGNYLTFE-DVLGN 132
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
D G+I T++I LENT G + +E + E +++ ++LH+DGAR++NA
Sbjct: 133 VTYDDDGDIHAAPTKVISLENT---LHGIIIPIEEIRKISEFCRENDIRLHLDGARLWNA 189
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243
+VA G+ ++ DS S+CLSK LGAP+GSV+VG ++FI+KA +K GGG+RQ G+
Sbjct: 190 SVATGISIKEYCSYFDSVSLCLSKSLGAPIGSVLVGDEKFIRKANHFKKQSGGGIRQAGI 249
Query: 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303
+ A A+ A+ N L L+ H AK + + Q G++++ V+T++V+ ++ +
Sbjct: 250 MSAMAIHAIDYN-LSKLELSHNYAKQIGD-FCQEHGIKLE-SPVDTSLVFLDLKAN---- 302
Query: 304 AACLLKKLEEHGVLVMPESSTRV-----RIVVHHQISANDVHYTLSC 345
K++ + ++ + + V RI H Q+S V C
Sbjct: 303 ------KMDPNRLVELGRTKYNVKLMGQRIACHFQLSQESVDNVKKC 343
|
Candida albicans (taxid: 5476) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|O74267|GLY1_ASHGO Low-specificity L-threonine aldolase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GLY1 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 190/358 (53%), Gaps = 19/358 (5%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
D RSDT T PT M A +A + D V D +LE +AK+ G EAG+F SGT+ N
Sbjct: 17 DFRSDTFTTPTREMIEAALTATIGDAVYQEDIDTLKLEQHVAKLAGMEAGMFCVSGTLSN 76
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGG--VHPRTVKNNQDGTMDIDLIEAA 124
I++ H ++ +H++ +E G++ + V P N T++ D+ +
Sbjct: 77 QIALRTHLTQPPYSILCDYRAHVYTHEAAGLAILSQAMVTPVIPSNGNYLTLE-DIKKHY 135
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
I D G+I T++I LENT G +E + ++ L+LH DGARI+NA+
Sbjct: 136 IPD-DGDIHGAPTKVISLENT---LHGIIHPLEELVRIKAWCMENDLRLHCDGARIWNAS 191
Query: 185 VALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVL 244
GVP+++ + DS S+CLSK +GAP+GS++VGS +FIKKA RK GGG+RQ G++
Sbjct: 192 AESGVPLKQYGELFDSISICLSKSMGAPMGSILVGSHKFIKKANHFRKQQGGGVRQSGMM 251
Query: 245 CAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304
C A+VA+Q + + H+ A LA + G+ ++ A +TN V+ ++ + SK+
Sbjct: 252 CKMAMVAIQGDWKGKMRRSHRMAHELARFCAE-HGIPLESPA-DTNFVFLDL-QKSKMNP 308
Query: 305 ACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV----HYTLSCFQKIYAGVCEENG 358
L+KK ++G +M R+ H+QIS + L F+ +ENG
Sbjct: 309 DVLVKKSLKYGCKLMGG-----RVSFHYQISEESLEKIKQAILEAFEYSKKNPYDENG 361
|
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|P37303|GLY1_YEAST Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLY1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 180/334 (53%), Gaps = 11/334 (3%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
+T DLRSDT T PT M A A + D V D RLE +A++ GKEAGLF S
Sbjct: 11 ITAANDLRSDTFTTPTAEMMEAALEASIGDAVYGEDVDTVRLEQTVARMAGKEAGLFCVS 70
Query: 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLI 121
GT+ N I++ H ++ +H++ +E G++ + V + + ++ I
Sbjct: 71 GTLSNQIAIRTHLMQPPYSILCDYRAHVYTHEAAGLAILSQAMVVPVVPSNGDYLTLEDI 130
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181
++ G+I TRLI LENT G +E + ++GLKLH DGARI+
Sbjct: 131 KSHYVPDDGDIHGAPTRLISLENT---LHGIVYPLEELVRIKAWCMENGLKLHCDGARIW 187
Query: 182 NAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQV 241
NAA GVP+++ + DS S+CLSK +GAP+GSV+VG+ +F+KKA RK GGG+RQ
Sbjct: 188 NAAAQSGVPLKQYGEIFDSISICLSKSMGAPIGSVLVGNLKFVKKATHFRKQQGGGIRQS 247
Query: 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301
G++ ALV + + L H A LAE + KG+ ++ A +TN V+ + + ++
Sbjct: 248 GMMARMALVNINNDWKSQLLYSHSLAHELAE-YCEAKGIPLESPA-DTNFVFINL-KAAR 304
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQIS 335
+ L+KK ++ V +M R+ H+Q++
Sbjct: 305 MDPDVLVKKGLKYNVKLMGG-----RVSFHYQVT 333
|
Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
| >sp|Q9UW18|TOXG_COCCA Alanine racemase TOXG OS=Cochliobolus carbonum GN=TOXG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 186/361 (51%), Gaps = 21/361 (5%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
D RSD +T+P+ M +A+ + DDV D T E +A++ G+E G+FV +GTM N
Sbjct: 39 DFRSDVITRPSLRMLSAVLKTTLGDDVFREDLTTAHFEAHVAEISGREEGMFVITGTMAN 98
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDI-DLIEAAI 125
+ + TR ++L SH YE GG S + G + V+ + + + DL E AI
Sbjct: 99 QLCLHALVSTRPCGILLSSESHAIHYEAGGSSMLSGAMLQPVQPSNGKYLRVEDLEEHAI 158
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
++ T ++ +ENT GG + V + + AK++ ++ H+DGAR+F A
Sbjct: 159 L--TDDVHKCPTSIVSMENT---AGGAVVPVHELRRIRDWAKQNNVRTHLDGARLFEAVA 213
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
++ D SV SK LGAP+G++I+G K+ I++ RR RK +GGGMRQ GV+
Sbjct: 214 TGAGTLKEYCSLIDLVSVDFSKNLGAPMGAMILGDKKLIQQMRRTRKGIGGGMRQGGVIT 273
Query: 246 AAALVALQENVLVMLDGD-------HKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE 298
AAA AL EN + + + HK AK L E + KG ++ + +ETNI++ ++ +
Sbjct: 274 AAAREALFENFGLGAEIESQTLLQVHKVAKRLGEEWTR-KGGKLSKE-IETNIIWLDL-D 330
Query: 299 DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358
+ + + K E+GV++ RIV HHQI V + F I +N
Sbjct: 331 AVGIKKSQFIDKGREYGVIL-----DGCRIVCHHQIDIYAVEALIDVFHDILKADPIKNK 385
Query: 359 N 359
N
Sbjct: 386 N 386
|
Essential role in the production of the major forms of HC-toxin, all of which contain D-alanine. The absence of this enzyme reduces pathogenicity of the fungus on maize. Synthesizes D-alanine from L-alanine. Cochliobolus carbonum (taxid: 5017) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9HTF1|LTAE_PSEAE Low specificity L-threonine aldolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ltaE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 121/313 (38%), Gaps = 30/313 (9%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEV-------DDDVLMHDPTAFR--LETEMAKVM 51
M T SD + AAMA A DD FR ET+
Sbjct: 1 MTDHTQQFASDNYSGICPEAWAAMAEANRGHERAYGDDQWTARASDYFRQLFETDCEV-- 58
Query: 52 GKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN 111
F +GT N +++ C++ S VI + +H+ E G +
Sbjct: 59 -----FFAFNGTAANSLALAALCQSYHS-VICSETAHVETDECGAPEFFSNGSKLLLAQT 112
Query: 112 QDGTMDIDLIEAAIRD---PKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168
+ G L A+IRD + +I YP R++ L T A G + ++ K+
Sbjct: 113 EVGK----LTPASIRDIALKRQDIHYPKPRVVTL--TQATEVGTVYRPDELKAISATCKE 166
Query: 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCL-SKGLGAPVGSVIVGSKEFIKKA 227
GL LH+DGAR NA LG L A +C G VG I+ + +
Sbjct: 167 LGLHLHMDGARFSNACAFLGCSPAELSWKAGVDVLCFGGTKNGMAVGEAILFFNRDLAED 226
Query: 228 RRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDH--KKAKLLAEGLNQLKGLRVDVD 285
R G + AA V + ++ + DH + A+LLAE + + G+ + +
Sbjct: 227 FDYRCKQAGQLASKMRFLAAPWVGVLQDDAWLRYADHANRCARLLAELVADVPGVSL-MF 285
Query: 286 AVETNIVYFEITE 298
VE N V+ +++E
Sbjct: 286 PVEANGVFLQLSE 298
|
Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 225453044 | 364 | PREDICTED: L-allo-threonine aldolase-lik | 0.997 | 0.983 | 0.816 | 1e-170 | |
| 224144565 | 359 | predicted protein [Populus trichocarpa] | 0.997 | 0.997 | 0.813 | 1e-168 | |
| 449527661 | 359 | PREDICTED: L-allo-threonine aldolase-lik | 0.994 | 0.994 | 0.802 | 1e-168 | |
| 449442971 | 359 | PREDICTED: L-allo-threonine aldolase-lik | 0.994 | 0.994 | 0.802 | 1e-167 | |
| 255561931 | 358 | l-allo-threonine aldolase, putative [Ric | 0.997 | 1.0 | 0.813 | 1e-166 | |
| 356505991 | 358 | PREDICTED: L-allo-threonine aldolase-lik | 0.997 | 1.0 | 0.796 | 1e-164 | |
| 388511175 | 358 | unknown [Lotus japonicus] | 0.997 | 1.0 | 0.791 | 1e-163 | |
| 356576676 | 371 | PREDICTED: L-allo-threonine aldolase-lik | 0.997 | 0.964 | 0.792 | 1e-162 | |
| 388503956 | 358 | unknown [Medicago truncatula] | 0.997 | 1.0 | 0.777 | 1e-162 | |
| 297242515 | 360 | L-allo-threonine aldolase [Carica papaya | 0.963 | 0.961 | 0.801 | 1e-161 |
| >gi|225453044|ref|XP_002266992.1| PREDICTED: L-allo-threonine aldolase-like isoform 1 [Vitis vinifera] gi|359488055|ref|XP_003633695.1| PREDICTED: L-allo-threonine aldolase-like isoform 2 [Vitis vinifera] gi|359488057|ref|XP_003633696.1| PREDICTED: L-allo-threonine aldolase-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 293/359 (81%), Positives = 324/359 (90%), Gaps = 1/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MVTRTVDLRSDTVTKPTE MRAAMA AEVDDDVL+ DPTA RLETEMA++ GKEA LFVP
Sbjct: 1 MVTRTVDLRSDTVTKPTETMRAAMAIAEVDDDVLVCDPTAERLETEMARITGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHCE RGSEVILGDNSHIHIYENGGIST+GGVHPRTVKNN+DGTMDI+L
Sbjct: 61 SGTMGNLISVLVHCEVRGSEVILGDNSHIHIYENGGISTLGGVHPRTVKNNEDGTMDINL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP+GE+VYPTTRLICLENTHANCGGRCL EY D VGE+AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPRGELVYPTTRLICLENTHANCGGRCLPAEYIDRVGELAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA++ALGVPV RL+QAADSASVCLSKGLGAPVGSVIVGSK FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASIALGVPVHRLLQAADSASVCLSKGLGAPVGSVIVGSKSFIAKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG++CAAALVALQEN+ L+GDHKKAK+LAEGLNQ+KGL+V+V +VETNIVYFEI E S
Sbjct: 241 VGIICAAALVALQENI-AKLEGDHKKAKILAEGLNQIKGLKVNVTSVETNIVYFEIVEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359
+ A L K L+EHGVL+MPESS+R+R+V+HHQIS DV YTLSC Q+ GV + NG+
Sbjct: 300 NITAEKLCKYLQEHGVLMMPESSSRIRVVLHHQISGTDVQYTLSCIQQAVTGVHDCNGD 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144565|ref|XP_002325334.1| predicted protein [Populus trichocarpa] gi|222862209|gb|EEE99715.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/360 (81%), Positives = 323/360 (89%), Gaps = 2/360 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MVTRTVDLRSDTVTKPTEAMRAAMA+AEVDDDVL +DP+A RLETEMAKV GKEA LFVP
Sbjct: 1 MVTRTVDLRSDTVTKPTEAMRAAMANAEVDDDVLSYDPSALRLETEMAKVTGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNL+SVLVHC RGSEVILG+NSHIHIYENGGISTIGGVHPRTVKNN DGTMDIDL
Sbjct: 61 SGTMGNLVSVLVHCNIRGSEVILGNNSHIHIYENGGISTIGGVHPRTVKNNDDGTMDIDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP+GEIVYPTTRLICLENT ANCGGRCLSVEYTD VGE+AKKHGLKLH+DGARI
Sbjct: 121 IEAAIRDPRGEIVYPTTRLICLENTQANCGGRCLSVEYTDKVGELAKKHGLKLHMDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA++ALGVPV RL+QAADSASVCLSKGLGAPVGSVIVGSK FI KAR LRKTLGGGMRQ
Sbjct: 181 FNASIALGVPVHRLLQAADSASVCLSKGLGAPVGSVIVGSKSFIAKARILRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VGVLCAAALVAL E VL L+ DHKK K+LAEGLNQ+KGLR++V AVETNI++F++ E +
Sbjct: 241 VGVLCAAALVALHETVL-KLEDDHKKTKMLAEGLNQIKGLRLNVAAVETNIIFFDVVEGA 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG-VCEENGN 359
K+ A L K LE+HG+LVM ES R+R+V+HHQIS +DV Y LSCF++ AG V EENGN
Sbjct: 300 KITAEKLCKNLEQHGILVMQESPVRIRVVLHHQISESDVQYALSCFKQALAGRVQEENGN 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527661|ref|XP_004170828.1| PREDICTED: L-allo-threonine aldolase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/359 (80%), Positives = 324/359 (90%), Gaps = 2/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV RTVDLRSDTVTKPTEAMRAAMASAEVDDDVL +DPTA RLETEMAK+MGKEA LFVP
Sbjct: 1 MVKRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLKYDPTALRLETEMAKIMGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHCE RGSEVILGDNSHIHIYENGGI+TIGGVHPRTV+NN DGTMD+DL
Sbjct: 61 SGTMGNLISVLVHCEIRGSEVILGDNSHIHIYENGGIATIGGVHPRTVRNNGDGTMDLDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP+GE+V+PTTRLICLEN+HANCGGRCLSVEYTD VG++AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPRGELVFPTTRLICLENSHANCGGRCLSVEYTDRVGDLAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS+ FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVDRLVQAADSVSVCLSKGLGAPVGSVIVGSRAFINKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVA+QEN+ V L+GDH+ AK+LA+GLN++KGL+V+ +ETNI++ +I E S
Sbjct: 241 VGILCAAALVAIQENI-VKLEGDHENAKILADGLNKIKGLQVESHLIETNIIFVDIKEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG-VCEENG 358
+ L K LEEHG+LV+PESS+R+RIV+HHQISA D YTLSCFQ+ AG + ENG
Sbjct: 300 TITGDKLSKILEEHGILVLPESSSRIRIVLHHQISATDTQYTLSCFQQAMAGAITNENG 358
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442971|ref|XP_004139254.1| PREDICTED: L-allo-threonine aldolase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/359 (80%), Positives = 324/359 (90%), Gaps = 2/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV RTVDLRSDTVTKPTEAMRAAMASAEVDDDVL +DPTA RLETEMAK+MGKEA LFVP
Sbjct: 1 MVKRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLKYDPTALRLETEMAKIMGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHCE RGSEVILGDNSHIHIYENGGI+TIGGVHPRTV+NN DGTMD+DL
Sbjct: 61 SGTMGNLISVLVHCEIRGSEVILGDNSHIHIYENGGIATIGGVHPRTVRNNGDGTMDLDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP+GE+V+PTTRLICLEN+HANCGGRCLSVEYTD VG++AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPRGELVFPTTRLICLENSHANCGGRCLSVEYTDRVGDLAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS+ FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVDRLVQAADSVSVCLSKGLGAPVGSVIVGSRAFINKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVA+QEN+ V L+GDH+ AK+LA+GLN++KGL+V+ +ETNI++ +I E S
Sbjct: 241 VGILCAAALVAIQENI-VKLEGDHENAKILADGLNKIKGLQVESHLIETNIIFVDIKEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG-VCEENG 358
+ L K LEEHG+LV+PESS+R+RIV+HHQISA D YTLSCFQ+ AG + ENG
Sbjct: 300 IITGDKLSKILEEHGILVLPESSSRIRIVLHHQISATDTQYTLSCFQQAMAGAITNENG 358
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561931|ref|XP_002521974.1| l-allo-threonine aldolase, putative [Ricinus communis] gi|223538778|gb|EEF40378.1| l-allo-threonine aldolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/359 (81%), Positives = 317/359 (88%), Gaps = 1/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV RTVDLRSDTVTKPTEAMRAAMA+AEVDDDVL +DP+AFRLETEMAK+MGKEA L+VP
Sbjct: 1 MVMRTVDLRSDTVTKPTEAMRAAMANAEVDDDVLGYDPSAFRLETEMAKIMGKEAALYVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHC RGSEVILG NSHIHI+ENGGIST+GGVHPRTV+NN+DGTMDIDL
Sbjct: 61 SGTMGNLISVLVHCNIRGSEVILGHNSHIHIFENGGISTLGGVHPRTVQNNKDGTMDIDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP+GE+VYPTTRLICLEN+HANCGGRCLSVEYTD VGE+AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPRGELVYPTTRLICLENSHANCGGRCLSVEYTDRVGELAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNAAVALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS+ FI KAR LRKTLGGGMRQ
Sbjct: 181 FNAAVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSESFIAKARVLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVA+QEN L+ DHKK K LAEGLNQ+KGL VDV VETNI+Y +I E S
Sbjct: 241 VGILCAAALVAVQENA-GKLENDHKKTKALAEGLNQIKGLSVDVATVETNIIYLDIIEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359
K A L K LE+HGVLVM E +RIV+HHQISA+DV YTLS FQ+ GV EENGN
Sbjct: 300 KFTAEKLCKYLEKHGVLVMKEGPFSIRIVLHHQISASDVQYTLSIFQQALTGVQEENGN 358
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505991|ref|XP_003521772.1| PREDICTED: L-allo-threonine aldolase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/359 (79%), Positives = 315/359 (87%), Gaps = 1/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV R VDLRSDTVTKP+EAMRAAMASAEVDDDVL DP+ FRLETEMAK++GKE LFVP
Sbjct: 1 MVPRIVDLRSDTVTKPSEAMRAAMASAEVDDDVLGRDPSCFRLETEMAKILGKEGALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTM NLISVLVHC+ RGSEVILGDNSHIHIYENGGI+T+GGVHP TV+NN+DGTMDI L
Sbjct: 61 SGTMANLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPTTVRNNEDGTMDIHL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDPKGE+VYPTTRLICLENTH N GGRCLSVEYTD VGE+AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPKGELVYPTTRLICLENTHGNSGGRCLSVEYTDRVGEVAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVDRLVQAADSVSVCLSKGLGAPVGSVIVGSNNFITKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVALQENV L DH KAKLLA+GLN++KGLRVD+ +VETNI+Y E+ E S
Sbjct: 241 VGILCAAALVALQENV-GKLQSDHNKAKLLADGLNEIKGLRVDISSVETNIIYVEVEEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359
+ AA L K LE++G+L+MP S+R+RIV HHQISA+DV Y LSCFQ+ GV ENGN
Sbjct: 300 RATAAKLCKDLEDYGILLMPMGSSRLRIVFHHQISASDVQYALSCFQQAVNGVRNENGN 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388511175|gb|AFK43649.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/359 (79%), Positives = 314/359 (87%), Gaps = 1/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
M TRTVDLRSDTVTKPTEAMR AMA+A+VDDDVL HDPT FRLETEMAK+MGKEA LFVP
Sbjct: 1 MATRTVDLRSDTVTKPTEAMRTAMANADVDDDVLGHDPTCFRLETEMAKIMGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTM NLISVLVHC+ RGSEVILGDNSHIHIYENGGI+TIGGVHPRTV+NN+DGTMDIDL
Sbjct: 61 SGTMANLISVLVHCDIRGSEVILGDNSHIHIYENGGIATIGGVHPRTVRNNEDGTMDIDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIR+P E++YPTTRLICLENTH N GGRCLSVEYT+ VGE+AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRNPNLELIYPTTRLICLENTHGNSGGRCLSVEYTERVGEVAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVDRLVQAADSVSVCLSKGLGAPVGSVIVGSSSFIAKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVALQ+ ++ L+ DHKKA+ LA+GLNQ+KGLRVD +VETNIVY EI E S
Sbjct: 241 VGILCAAALVALQD-IVGELESDHKKARTLADGLNQIKGLRVDTSSVETNIVYIEIKEGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359
AA L K LE +GVL+MP S+++R+V HHQIS +DV Y LSCFQ+ GV ENGN
Sbjct: 300 GTTAAKLSKDLENYGVLLMPLGSSKIRVVFHHQISDSDVQYALSCFQQAVNGVGNENGN 358
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576676|ref|XP_003556456.1| PREDICTED: L-allo-threonine aldolase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/361 (79%), Positives = 319/361 (88%), Gaps = 3/361 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MVTR VDLRSDTVTKPTEAMRAAMASAEVDDDVL +DPTAFRLETEMAK MGK+A LFVP
Sbjct: 12 MVTRIVDLRSDTVTKPTEAMRAAMASAEVDDDVLGYDPTAFRLETEMAKTMGKDAALFVP 71
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHC+ RGSEVILGD HI+I+ENGGI+TIGGVHPR VKNN DGTMDIDL
Sbjct: 72 SGTMGNLISVLVHCDVRGSEVILGDTCHINIFENGGIATIGGVHPRQVKNNDDGTMDIDL 131
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP GE+ YPTT+LICLENTHAN GGRCLSVEYTD VGE+AKKHGLKLHIDGARI
Sbjct: 132 IEAAIRDPMGELFYPTTKLICLENTHANSGGRCLSVEYTDRVGELAKKHGLKLHIDGARI 191
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKG+GAPVGSVIVGSK FI KARRLRKTLGGGMRQ
Sbjct: 192 FNASVALGVPVDRLVQAADSVSVCLSKGIGAPVGSVIVGSKNFIAKARRLRKTLGGGMRQ 251
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
+G+LCAAALVALQENV L+ DHKKA+LLA+GLN++KGLRVD +VETN+V+ +I E +
Sbjct: 252 IGILCAAALVALQENV-GKLESDHKKARLLADGLNEVKGLRVDACSVETNMVFIDIEEGT 310
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA--GVCEENG 358
K A + K +EE G+LVM ESS+R+R+V+HHQISA+DV Y LSCFQ+ A GV +E G
Sbjct: 311 KTRAEKICKYMEERGILVMQESSSRMRVVLHHQISASDVQYALSCFQQAVAVKGVQKEMG 370
Query: 359 N 359
N
Sbjct: 371 N 371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503956|gb|AFK40044.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 279/359 (77%), Positives = 314/359 (87%), Gaps = 1/359 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MVTRTVDLRSDTVTKPTE MR AMA+AEVDDDVL DP+ FRLE EMAK+ GKEA LFVP
Sbjct: 1 MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCFRLEEEMAKITGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHC+ RGSEVILGDNSHIHIYENGGI+T+GGVHPRTV+NN+DGTMDIDL
Sbjct: 61 SGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDL 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDPKGE+VYPTTRLICLEN+H N GGRCLSVEYT+ VGE+AK+HG KLHIDGARI
Sbjct: 121 IEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKQHGPKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLV+AADS SVCLSKG+GAPVGSVIVGS FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAALVAL ENV L+ DHK A+ LA+GLN++KGLRVD +VETNI+Y EI E+S
Sbjct: 241 VGILCAAALVALHENV-EKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359
AA L K LEE+G+L+MP ++R+R+V HHQIS +DV YTLSCF++ AG ENGN
Sbjct: 300 GTTAAKLSKDLEEYGILIMPMGTSRLRVVFHHQISDSDVRYTLSCFERAVAGEPNENGN 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297242515|gb|ADI24921.1| L-allo-threonine aldolase [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/347 (80%), Positives = 312/347 (89%), Gaps = 1/347 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MVTRTVDLRSDTVT+PTE MRAAM +AEVDDDVL HDPTAF LE+EMAK+MGKEA LFVP
Sbjct: 1 MVTRTVDLRSDTVTRPTEEMRAAMVTAEVDDDVLAHDPTAFLLESEMAKIMGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHC+ R SEV+LGDNSHIHIYENGGI+TIGGVHPRTVKNN+DGTMDI
Sbjct: 61 SGTMGNLISVLVHCDIRASEVVLGDNSHIHIYENGGIATIGGVHPRTVKNNEDGTMDIHS 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDP GE+++PTTRLICLENTHAN GGRCLSVEYTD VGE+AKKHGLKLHIDGARI
Sbjct: 121 IEAAIRDPAGELLFPTTRLICLENTHANSGGRCLSVEYTDRVGEVAKKHGLKLHIDGARI 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLVQAADS SVCLSKGLGAPVGSVIVGS+ FI KARRLRKTLGGGMRQ
Sbjct: 181 FNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSETFITKARRLRKTLGGGMRQ 240
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VG+LCAAA+VAL++N L L+GDHKKAK+LA+GLNQ+ GLRVD VETNI+YF++ E S
Sbjct: 241 VGILCAAAVVALRKN-LSKLEGDHKKAKILADGLNQINGLRVDAAKVETNIIYFKVMEYS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQ 347
++ A L K L++HG+LV+ E R+RIV+HHQISA+DV YTLSCFQ
Sbjct: 300 RMTAERLCKYLKDHGILVIYEGEFRIRIVLHHQISASDVQYTLSCFQ 346
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2025645 | 358 | THA1 "threonine aldolase 1" [A | 0.966 | 0.969 | 0.721 | 3.3e-134 | |
| TAIR|locus:2100860 | 355 | THA2 "threonine aldolase 2" [A | 0.963 | 0.974 | 0.711 | 5e-131 | |
| TIGR_CMR|GSU_3162 | 348 | GSU_3162 "L-allo-threonine ald | 0.933 | 0.962 | 0.458 | 9.6e-73 | |
| ZFIN|ZDB-GENE-040704-14 | 413 | tha1 "threonine aldolase 1" [D | 0.944 | 0.820 | 0.453 | 1.6e-70 | |
| UNIPROTKB|F1PI34 | 391 | LOC491550 "Uncharacterized pro | 0.938 | 0.861 | 0.444 | 8.9e-70 | |
| UNIPROTKB|F1MVX8 | 397 | LOC507443 "Uncharacterized pro | 0.947 | 0.856 | 0.440 | 1.8e-69 | |
| FB|FBgn0039094 | 383 | CG10184 [Drosophila melanogast | 0.838 | 0.785 | 0.476 | 4.9e-69 | |
| TIGR_CMR|CHY_0904 | 344 | CHY_0904 "low-specificity L-th | 0.902 | 0.941 | 0.464 | 9.2e-68 | |
| UNIPROTKB|Q9KLH9 | 343 | VC_A0765 "L-allo-threonine ald | 0.944 | 0.988 | 0.428 | 3.1e-67 | |
| TIGR_CMR|VC_A0765 | 343 | VC_A0765 "L-allo-threonine ald | 0.944 | 0.988 | 0.428 | 3.1e-67 |
| TAIR|locus:2025645 THA1 "threonine aldolase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 251/348 (72%), Positives = 298/348 (85%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV R+VDLRSDTVT+PT+AMR AM +AEVDDDVL +DPTA RLE EMAK+MGKEA LFVP
Sbjct: 1 MVMRSVDLRSDTVTRPTDAMREAMCNAEVDDDVLGYDPTARRLEEEMAKMMGKEAALFVP 60
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISV+VHC+ RGSEVILGDN HIH+YENGGISTIGGVHP+TVKN +DGTMD++
Sbjct: 61 SGTMGNLISVMVHCDVRGSEVILGDNCHIHVYENGGISTIGGVHPKTVKNEEDGTMDLEA 120
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIRDPKG YP+TRLICLENTHAN GGRCLSVEYT+ VGEIAK+HG+KLHIDGAR+
Sbjct: 121 IEAAIRDPKGSTFYPSTRLICLENTHANSGGRCLSVEYTEKVGEIAKRHGVKLHIDGARL 180
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA++ALGVPV +LV+AADS VCLSKGLGAPVGSVIVGS+ FI+KA+ +RKTLGGGMRQ
Sbjct: 181 FNASIALGVPVHKLVKAADSVQVCLSKGLGAPVGSVIVGSQSFIEKAKTVRKTLGGGMRQ 240
Query: 241 XXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
QEN L L DHKKAKLLAEGLNQ+KG+RV+V AVETN+++ ++ + S
Sbjct: 241 IGVLCAAALVALQEN-LPKLQHDHKKAKLLAEGLNQMKGIRVNVAAVETNMIFMDMEDGS 299
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348
+L A L K LEE+G+L++ +S+R+RIV+HHQI+ +DVHYTLSCFQ+
Sbjct: 300 RLTAEKLRKNLEENGILLIRGNSSRIRIVIHHQITTSDVHYTLSCFQQ 347
|
|
| TAIR|locus:2100860 THA2 "threonine aldolase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 247/347 (71%), Positives = 293/347 (84%)
Query: 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
RTVDLRSDTVTKPTE+MR+AMA+AEVDDDVL +DPTA RLE E+A++ GKEA +FVPSGT
Sbjct: 8 RTVDLRSDTVTKPTESMRSAMANAEVDDDVLGNDPTALRLEKEVAEIAGKEAAMFVPSGT 67
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
MGNLISVLVHC+ RGSEVILGD+SHIHIYENGG+S++GGVHPRTVKN +DGTM+I IEA
Sbjct: 68 MGNLISVLVHCDERGSEVILGDDSHIHIYENGGVSSLGGVHPRTVKNEEDGTMEIGAIEA 127
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
A+R PKG++ +P T+LICLENT ANCGGRCL +EY D VGE+AKKHGLKLHIDGARIFNA
Sbjct: 128 AVRSPKGDLHHPVTKLICLENTQANCGGRCLPIEYIDKVGELAKKHGLKLHIDGARIFNA 187
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXX 243
+VALGVPV+R+VQAADS S+CLSKG+GAPVGSVIVGSK+FI KAR LRKTLGGGMRQ
Sbjct: 188 SVALGVPVKRIVQAADSVSICLSKGIGAPVGSVIVGSKKFITKARWLRKTLGGGMRQIGV 247
Query: 244 XXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303
ENV L+ DHKKA++LAEGLN+++ LRV+V AVETNI+Y +I ED K
Sbjct: 248 LCAAALVALHENV-AKLEDDHKKARVLAEGLNRIERLRVNVAAVETNIIYVDIPEDPKFG 306
Query: 304 AACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
A K LE+ GVLV+P+++ R+RIV+HHQIS DV Y LSCF+KI+
Sbjct: 307 AEEACKSLEDVGVLVIPQATFRIRIVLHHQISDVDVEYVLSCFEKIF 353
|
|
| TIGR_CMR|GSU_3162 GSU_3162 "L-allo-threonine aldolase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 159/347 (45%), Positives = 214/347 (61%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVT+P+ AMRAAMA AEV DDV DPT RLE A +G EA LF SGT
Sbjct: 4 IDLRSDTVTRPSPAMRAAMAGAEVGDDVYGEDPTVNRLEELGAATLGTEAALFTASGTQA 63
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
NL+++L HC RG E I G +H + YE GG + +GG+ P+ ++ DGT+D+ + AAI
Sbjct: 64 NLLALLAHCR-RGDEYIAGQTAHCYRYEGGGAAALGGIQPQPLEVEPDGTLDLSAVAAAI 122
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
+ P ++ + TRL+CLENTHA GR L ++Y + + L LH+DGARIFNAAV
Sbjct: 123 K-PD-DLHFARTRLLCLENTHA---GRVLPLDYLARARRLCNEQSLGLHMDGARIFNAAV 177
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
LGVPVR + DS SVCLSKGLGAPVGS++ G +EF+ ARR RK +GGGMRQ
Sbjct: 178 KLGVPVREIAGHVDSVSVCLSKGLGAPVGSLLCGGREFVATARRWRKAVGGGMRQAGILA 237
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
ENV + + DH A+ LAEGL + GL +D V+TN+V+ + + A
Sbjct: 238 AAGILALTENVDRLAE-DHANARRLAEGLAAIPGLGLDPSQVQTNMVFLCLPLRT---AD 293
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352
L L E G+L+ S +R+V H ++++DV ++ F +AG
Sbjct: 294 RLASFLNEQGILISGRES--IRLVTHLDVTSSDVERVIAAFGAFFAG 338
|
|
| ZFIN|ZDB-GENE-040704-14 tha1 "threonine aldolase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 160/353 (45%), Positives = 215/353 (60%)
Query: 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
RTVDLRSDTVTKP AMR AMA AEV DDV DPT L+ A++ G +A L+VPSGT
Sbjct: 44 RTVDLRSDTVTKPGAAMRRAMAEAEVGDDVFGEDPTVNELQKIAAEMFGMKAALYVPSGT 103
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
M NLI+V+VHC RG E+I GD SHIHIYE GG + + GVH T++ DGT D+D + +
Sbjct: 104 MSNLIAVMVHCRERGDEMIAGDLSHIHIYEQGGSAQLAGVHSATLRTLGDGTFDLDQLIS 163
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
IR + YP +RL+C+ENTH GGR L + + + +A + GL +H+DGAR+ NA
Sbjct: 164 KIRHGYPDPHYPRSRLVCVENTHNIQGGRVLPLAFLQELRSVADQFGLAVHMDGARVMNA 223
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXX 243
AVALGV ++Q S SVCLSKGLGAPVGS++ GSK+FI++A R+RK LGGGMRQ
Sbjct: 224 AVALGVQPSAILQHCHSVSVCLSKGLGAPVGSMLGGSKDFIQRAVRVRKVLGGGMRQLGI 283
Query: 244 XXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGL--RVDVDAVETNIVYFEITEDS- 300
+ ++ L+ DH+ A+ A+ L + +VD++ V+TNIV F + E
Sbjct: 284 LAAAGKIALSD-MIGRLEEDHRNARHFAQALLESDPALYQVDLNTVQTNIVRFSLREGQM 342
Query: 301 ------KLYAACLLKKLEEHG----VLVMPESSTRVRIVVHHQISANDVHYTL 343
+ A ++++ G VL+ P VR V H IS D +
Sbjct: 343 SPVEFCERMAGVDEEEVKALGQGVPVLMFPHVGDTVRAVWHLGISEEDTQLAI 395
|
|
| UNIPROTKB|F1PI34 LOC491550 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 155/349 (44%), Positives = 209/349 (59%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
VDLRSDTVTKP AMR AMA A V DD DPT L+ + AK++G E LFVP+ TM
Sbjct: 32 VDLRSDTVTKPGPAMRRAMAEAVVGDDDYGEDPTVRELQEKAAKLLGVERTLFVPTNTMA 91
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
NLISV+ HC+ RGS+++LG H+H+YE GG++ I GVH + + GT+D+ +E +
Sbjct: 92 NLISVMGHCQRRGSQLLLGQECHLHVYEQGGVAQIAGVHSHPLPDLPHGTLDLADLERMV 151
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
G +P LICLENTH++ GGR L ++Y V +A+ +G+++H+DGAR+ NAAV
Sbjct: 152 TRGLGSPYHPVCELICLENTHSSSGGRVLPIDYLHQVHRLARSYGVRVHLDGARLMNAAV 211
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
AL V R+V+ DS S+C SKGLGAPVG+++ G K+FI+ A RLRK LGGGMRQ
Sbjct: 212 ALRVSPARIVEHCDSVSLCFSKGLGAPVGALVGGPKDFIEGAWRLRKALGGGMRQAGVLA 271
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKG--LRVDVDAVETNIVYFEIT-----E 298
+ V+L DH+ A+ A GL +L VDV AVETN+V + E
Sbjct: 272 AAALVGLADAEEVLLR-DHQNAQRFARGLQELASPICSVDVAAVETNVVMVTVDGLAPEE 330
Query: 299 DSKLYAACLLKKLEEHG----VLVMPESSTRVRIVVHHQISANDVHYTL 343
+ A ++ + G VL+ P S VR V H +SA D L
Sbjct: 331 LCRRLRAVSAAEVAQTGRAVRVLLFPWSERSVRAVWHRDVSAQDTELAL 379
|
|
| UNIPROTKB|F1MVX8 LOC507443 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 155/352 (44%), Positives = 209/352 (59%)
Query: 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSG 62
T VDLRSDTVTKP AMR AMA A V DD DPT L+ A+++G E LFVP+
Sbjct: 35 TYVVDLRSDTVTKPGPAMRRAMAEAVVGDDDYGEDPTVRELQATAAELLGVERTLFVPTN 94
Query: 63 TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIE 122
TM NLISV+ HC RGS+++LG H+H+YE GG++ I GVH + + GT+D+ +E
Sbjct: 95 TMANLISVMCHCRRRGSQLLLGHECHLHVYEQGGVAQIAGVHSHPLPDLPHGTLDLAELE 154
Query: 123 AAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFN 182
+ G +P LICLENTH++ GGR L +EY V +A+++G+++H+DGAR+ N
Sbjct: 155 RLVTRGLGSPYHPVCELICLENTHSSSGGRVLPMEYLRQVHLLAQRYGVRVHLDGARLMN 214
Query: 183 AAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXX 242
AAVALGVP +V+ DS S+C SKGLGAPVG+++ G K+FI++A RLRK LGGGMRQ
Sbjct: 215 AAVALGVPPACIVEHCDSVSLCFSKGLGAPVGALVGGPKDFIEEAWRLRKALGGGMRQAG 274
Query: 243 XXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKG--LRVDVDAVETNIVYFEIT--- 297
+ ML DH+ A+ A GL +L VD AVETN+V +
Sbjct: 275 VLAAAALVGLAD-AEEMLQRDHQNAQRFARGLQELASPVCSVDPTAVETNMVMVRVDGLP 333
Query: 298 --EDSKLYAACLLKKLEEHG----VLVMPESSTRVRIVVHHQISANDVHYTL 343
E + A ++ + G VL+ P + VR V H +SA D L
Sbjct: 334 PEELCRRLQAVSADEVAQTGRVVRVLLFPWAERSVRAVWHRGVSAQDTELAL 385
|
|
| FB|FBgn0039094 CG10184 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 150/315 (47%), Positives = 201/315 (63%)
Query: 1 MVTRTV-DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFV 59
M T +V DLRSDTV++PT+ MRA MA+A V DDV DPT LE A + GKEAGLFV
Sbjct: 1 MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAAIFGKEAGLFV 60
Query: 60 PSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDID 119
PSGTMGNL++++VHC RG+E ++GD SHI +YE GG S + GV T+KN QDGT +
Sbjct: 61 PSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASHLAGVQLATLKNEQDGTFSLQ 120
Query: 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG-------LK 172
+ IR + P T L+ +E TH CGG+ + + + D + + ++ G +
Sbjct: 121 DLRRRIRHE--DCHEPITSLVVVEQTHNICGGKVVPLAFLDELAALVRQPGVGTGNARIA 178
Query: 173 LHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRK 232
LH+DGAR+FNAA ALGV V R+ + DS S+CLSKGL APVGSV+VGSK FI +A RLRK
Sbjct: 179 LHMDGARVFNAATALGVGVERICRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRK 238
Query: 233 TLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKG--LRVDVDAVETN 290
LGGGMRQ E V+ +L DH++ +A + +LK + V V +V++N
Sbjct: 239 ALGGGMRQVGVLAAAGLVALDE-VVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSN 297
Query: 291 IVYFEITEDSKLYAA 305
I+ EIT+ KL A+
Sbjct: 298 ILLVEITQP-KLTAS 311
|
|
| TIGR_CMR|CHY_0904 CHY_0904 "low-specificity L-threonine aldolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 155/334 (46%), Positives = 208/334 (62%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVT PT MR AM SAEV DDV DPT LE A+ +GKEA LFVPSGTMG
Sbjct: 4 IDLRSDTVTTPTPKMREAMFSAEVGDDVYGDDPTVRELEELAAQRIGKEAALFVPSGTMG 63
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N ++++ H + RG EVILG++ HI YE G + + GV R +K N G MD++ ++AAI
Sbjct: 64 NQLALMTHTQ-RGDEVILGEDCHIFKYEVGAPAVLSGVQLRGLKTN-GGMMDLEEVKAAI 121
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
R P +I P T LICLEN +++ G + + Y + + EIA+ HGLK+H+DGARIFNAA+
Sbjct: 122 R-PN-DIHMPRTSLICLENAYSS--GEVVPLHYLEKIREIAESHGLKIHLDGARIFNAAI 177
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
LGV R + + ADS CLSKGL APVGS++ GS+EF++KAR+ RK LGGGMRQ
Sbjct: 178 YLGVDAREIARYADSVMFCLSKGLSAPVGSILAGSREFVEKARKYRKLLGGGMRQAGILA 237
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
+E V + + DH+ A LA+ L L G VD+ V+ N+V+ S L
Sbjct: 238 AAGMVALKEMVDRLCE-DHENALYLAQKLINL-GFEVDLKKVQINMVWARAK--SHLNIE 293
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339
L +KL G+ + P + R V H ++ D+
Sbjct: 294 DLPEKLLAEGIKINPPINGLFRFVTHKDVTKGDI 327
|
|
| UNIPROTKB|Q9KLH9 VC_A0765 "L-allo-threonine aldolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 150/350 (42%), Positives = 208/350 (59%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
V +D RSDTVT+PT+AMR AMA A V DDV DPT LE A+ G EA LF S
Sbjct: 5 VGENMDFRSDTVTQPTDAMRQAMAQAPVGDDVYGDDPTVNELEQWAAERHGFEAALFTTS 64
Query: 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLI 121
GT NL+ +L HCE RG E + G +H + YE GG + +G + P+ + N DGT+D +
Sbjct: 65 GTQANLLGLLAHCE-RGDEYLCGQQAHNYRYEAGGAAVLGSIQPQPIDNEPDGTLDFAKL 123
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181
+AAI+ + T+L+ LENT G+ L + Y E +HGL+LH+DGAR++
Sbjct: 124 KAAIKPDDAH--FARTKLLSLENT---INGKVLPLSYLAKAREFVDQHGLQLHLDGARVY 178
Query: 182 NAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQX 241
NAAVAL V V+ + Q DS +VCLSKGL APVGS+++GSK+FI KARR RK +GGGMRQ
Sbjct: 179 NAAVALDVDVKEIAQYFDSITVCLSKGLAAPVGSLLLGSKDFIAKARRWRKMVGGGMRQA 238
Query: 242 XXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301
E V+ L DH A+ LA GLN L G V+ + V+TNIV+ ++ DS
Sbjct: 239 GILAAAGKLALTEQVM-QLKTDHDNARHLALGLNALPGFSVNTEWVQTNIVFAKL--DST 295
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351
+ + ++L + G+++ + VR V H I+ D+ L+ + + A
Sbjct: 296 VDIQSIAQQLRQAGIIIT--AGNPVRFVTHKDITRQDIDTLLAKLRTLLA 343
|
|
| TIGR_CMR|VC_A0765 VC_A0765 "L-allo-threonine aldolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 150/350 (42%), Positives = 208/350 (59%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
V +D RSDTVT+PT+AMR AMA A V DDV DPT LE A+ G EA LF S
Sbjct: 5 VGENMDFRSDTVTQPTDAMRQAMAQAPVGDDVYGDDPTVNELEQWAAERHGFEAALFTTS 64
Query: 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLI 121
GT NL+ +L HCE RG E + G +H + YE GG + +G + P+ + N DGT+D +
Sbjct: 65 GTQANLLGLLAHCE-RGDEYLCGQQAHNYRYEAGGAAVLGSIQPQPIDNEPDGTLDFAKL 123
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181
+AAI+ + T+L+ LENT G+ L + Y E +HGL+LH+DGAR++
Sbjct: 124 KAAIKPDDAH--FARTKLLSLENT---INGKVLPLSYLAKAREFVDQHGLQLHLDGARVY 178
Query: 182 NAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQX 241
NAAVAL V V+ + Q DS +VCLSKGL APVGS+++GSK+FI KARR RK +GGGMRQ
Sbjct: 179 NAAVALDVDVKEIAQYFDSITVCLSKGLAAPVGSLLLGSKDFIAKARRWRKMVGGGMRQA 238
Query: 242 XXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301
E V+ L DH A+ LA GLN L G V+ + V+TNIV+ ++ DS
Sbjct: 239 GILAAAGKLALTEQVM-QLKTDHDNARHLALGLNALPGFSVNTEWVQTNIVFAKL--DST 295
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351
+ + ++L + G+++ + VR V H I+ D+ L+ + + A
Sbjct: 296 VDIQSIAQQLRQAGIIIT--AGNPVRFVTHKDITRQDIDTLLAKLRTLLA 343
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O13940 | GLY1_SCHPO | 4, ., 1, ., 2, ., 4, 8 | 0.3816 | 0.8662 | 0.8271 | yes | no |
| Q21890 | YF64_CAEEL | No assigned EC number | 0.4224 | 0.9498 | 0.8256 | yes | no |
| P37303 | GLY1_YEAST | 4, ., 1, ., 2, ., 4, 8 | 0.3473 | 0.8997 | 0.8346 | yes | no |
| O74267 | GLY1_ASHGO | 4, ., 1, ., 2, ., 4, 8 | 0.3379 | 0.9442 | 0.8874 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.2 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| PLN02721 | 353 | PLN02721, PLN02721, threonine aldolase | 0.0 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 1e-126 | |
| PRK10534 | 333 | PRK10534, PRK10534, L-threonine aldolase; Provisio | 1e-107 | |
| cd06502 | 338 | cd06502, TA_like, Low-specificity threonine aldola | 1e-105 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 1e-104 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 4e-16 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 5e-10 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 6e-09 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 1e-07 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-07 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 1e-06 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-06 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 1e-05 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-05 | |
| COG3033 | 471 | COG3033, TnaA, Tryptophanase [Amino acid transport | 4e-05 | |
| cd00617 | 431 | cd00617, Tnase_like, Tryptophanase family (Tnase) | 1e-04 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 1e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 2e-04 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 2e-04 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 3e-04 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 3e-04 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 5e-04 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 5e-04 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 6e-04 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 6e-04 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 0.001 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 0.001 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 0.001 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 0.001 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 0.002 | |
| PRK13238 | 460 | PRK13238, tnaA, tryptophanase/L-cysteine desulfhyd | 0.002 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 0.003 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 0.004 |
| >gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase | Back alignment and domain information |
|---|
Score = 644 bits (1662), Expect = 0.0
Identities = 285/353 (80%), Positives = 318/353 (90%), Gaps = 2/353 (0%)
Query: 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
MV+R VDLRSDTVTKPT+AMRAAMA+AEVDDDVL +DPTA RLE EMAK+ GKEA LFVP
Sbjct: 3 MVSRVVDLRSDTVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEAALFVP 62
Query: 61 SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDL 120
SGTMGNLISVLVHC+ RGSEVILGDNSHIH+YENGGIST+GGVHPRTVKNN+DGTMD+D
Sbjct: 63 SGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDA 122
Query: 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180
IEAAIR PKG+ +PTTRLICLENTHANCGGRCLSVEYTD VGE+AK+HGLKLHIDGARI
Sbjct: 123 IEAAIR-PKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI 181
Query: 181 FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
FNA+VALGVPV RLV+AADS SVCLSKGLGAPVGSVIVGSK FI+KA+RLRKTLGGGMRQ
Sbjct: 182 FNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKTLGGGMRQ 241
Query: 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
VGVL AAALVALQENV L+ DHKKAKLLAEGLNQ+KGLRV+V AVETNIVYF+IT+ S
Sbjct: 242 VGVLAAAALVALQENVP-KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS 300
Query: 301 KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353
++ A L K LEEHGVL+MP +S+R+R+V HHQIS +DV YTLSCFQ+ +
Sbjct: 301 RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALTL 353
|
Length = 353 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-126
Identities = 153/291 (52%), Positives = 197/291 (67%), Gaps = 3/291 (1%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
DLRSDTVT PT AMR AMA+A V D+V DPT RLE +A++ GKEA LFVPSGTM N
Sbjct: 1 DLRSDTVTGPTPAMREAMAAAMVGDEVYGGDPTVNRLEDRVAELFGKEAALFVPSGTMAN 60
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIR 126
++++ HC RG EVI G+ +HI+ E GG + +GG P + + G +D++ +EAAIR
Sbjct: 61 QLALMAHCR-RGDEVICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIR 119
Query: 127 DPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA 186
P G+I +P T LI LENTH + GG+ +S+E + IA++HG+ LH+DGAR+ NAAVA
Sbjct: 120 -PVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVA 178
Query: 187 LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA 246
LGV V+ + ADS S+ LSKGLGAPVGSV+ GS +FI ARR RK LGGGMRQ GVL A
Sbjct: 179 LGVIVKEITSYADSVSMSLSKGLGAPVGSVLAGSDDFIAYARRQRKYLGGGMRQAGVLAA 238
Query: 247 AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297
A L AL+E V L DH A+ LAEGL L+G+ T++V+
Sbjct: 239 AGLRALEEGVA-RLGRDHATARRLAEGLELLRGVIPRRVYTNTHMVFVAEA 288
|
Length = 288 |
| >gnl|CDD|236710 PRK10534, PRK10534, L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = e-107
Identities = 148/334 (44%), Positives = 208/334 (62%), Gaps = 15/334 (4%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVT+P+ AM AM +A V DDV DPT L+ A++ GKEA LF+P+GT
Sbjct: 2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQA 61
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
NL+++L HCE RG E I+G +H ++YE GG + +G + P+ + DGT+ +D + A I
Sbjct: 62 NLVALLSHCE-RGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKI 120
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
+ +I + TRL+ LENTH G+ L EY E ++ L LH+DGARIFNA V
Sbjct: 121 K--PDDIHFARTRLLSLENTH---NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVV 175
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
A G ++ + Q DS ++CLSKGLG PVGS++VG++++IK+ARR RK GGGMRQ G+L
Sbjct: 176 AYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILA 235
Query: 246 AAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
AA L AL+ NV L DH A LAE QL+ DV +TN+++ + E+ AA
Sbjct: 236 AAGLYALKHNV-ARLQEDHDNAAWLAE---QLREAGADVMRQDTNMLFVRVGEEQ---AA 288
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339
L + + E VL+ +S VR+V H +S +
Sbjct: 289 ALGEYMRERNVLI--NASPIVRLVTHLDVSREQL 320
|
Length = 333 |
| >gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-105
Identities = 140/336 (41%), Positives = 192/336 (57%), Gaps = 11/336 (3%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
D RSDTVT PT M AMA+A V DDV DPT +LE A++ GKEA LFVPSGT N
Sbjct: 1 DFRSDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFGKEAALFVPSGTAAN 60
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIR 126
+++ H + G VI + +HI+ E G + GV V +G + + +EAAIR
Sbjct: 61 QLALAAHTQ-PGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGE-NGKLTPEDLEAAIR 118
Query: 127 DPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA 186
P+ +I +P L+ LENT ++ ++ +AK++GL LH+DGAR+ NAA A
Sbjct: 119 -PRDDIHFPPPSLVSLENTTEGGTVY--PLDELKAISALAKENGLPLHLDGARLANAAAA 175
Query: 187 LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA 246
LGV ++ DS S CLSKG GAPVG+V+VG+++FI +ARR RK GGGMRQ G L A
Sbjct: 176 LGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAA 235
Query: 247 AALVALQENVLV-MLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
A L AL+ ++ + L DH+ A+ LAE L +L G V+TNIV + E + ++
Sbjct: 236 AGLAALENDLWLRRLRHDHEMARRLAEALEELGG---LESEVQTNIVLLDPVEANAVFVE 292
Query: 306 CLLKKLEE--HGVLVMPESSTRVRIVVHHQISANDV 339
+ +E GVL VR V H + DV
Sbjct: 293 LSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDV 328
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. Length = 338 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = e-104
Identities = 134/337 (39%), Positives = 187/337 (55%), Gaps = 9/337 (2%)
Query: 5 TVDLRSDTVTKPTEAMRAAMASAE-VDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+D RSD V PT MR A+A+A V DDV DPT LE +A++ GKEA LFVPSGT
Sbjct: 1 MIDFRSDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGT 60
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
N +++ HC+ G VI + +HI+ E G GG + DG + + +EA
Sbjct: 61 QANQLALAAHCQ-PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEA 119
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
AIR +I + T L LENT GG ++ +++ + K+HGL LH+DGAR+ NA
Sbjct: 120 AIR--PDDIHHAPTPLAVLENTA-TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANA 176
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243
VALGV ++ + DS S CL+KG GAPVG+++ G+++F K+ARR RK GG MR+
Sbjct: 177 LVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARF 236
Query: 244 LCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302
L A L AL+++V + D + A LAEGL G+++ VETN+V+ +S +
Sbjct: 237 LAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFV-RLPESAI 294
Query: 303 YAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339
A L L GVL+ VR V S DV
Sbjct: 295 EALRLAGALFYRGVLI-GAHGEIVRFVTSWATSEEDV 330
|
Length = 342 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-16
Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 14/168 (8%)
Query: 52 GKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN 111
G + +FVPSGT N ++L G EVI+ N H Y P V +
Sbjct: 16 GNDKAVFVPSGTGANEAALLALLG-PGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA 74
Query: 112 QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D+ ++E P LI + + G E + +IAK++G+
Sbjct: 75 GYGGLDVAILEELKAKP-------NVALIVITPNTTSGGVLVPLKE----IRKIAKEYGI 123
Query: 172 KLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG 219
L +D A A+ A GV + AD + L K LG G V++
Sbjct: 124 LLLVDAASAGGASPAPGVLI--PEGGADVVTFSLHKNLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 42/251 (16%)
Query: 91 IYENGGISTIGG--VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148
YE + GG V + D++ +EAAI P T+ I L N+ N
Sbjct: 125 SYEAA-VKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT--------PKTKAIIL-NSPNN 174
Query: 149 CGGRCLSVEYTDSVGEIAKKHGLKLHID---GARIFNAAVALGVPVRRLVQAADSASVC- 204
G S E ++ E+A++H + + D +++ G +++ A +
Sbjct: 175 PTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD-----GAEHPSILELAGARDRTI 229
Query: 205 ----LSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMR---QVGVLCAAALVALQE 254
SK G +G V+ +E I R+L+ L Q AA+ AL
Sbjct: 230 TINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQ-----YAAIAALNG 284
Query: 255 N-----VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLK 309
V M + ++ LL E LN++ GL V ++ +I E K
Sbjct: 285 PQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAK-K 343
Query: 310 KLEEHGVLVMP 320
LEE GV V+P
Sbjct: 344 LLEEAGVAVVP 354
|
Length = 393 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 47/215 (21%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN----SHI---H 90
PT LE ++A + G EA L SG M + +VL+ G V+ D+ ++
Sbjct: 40 PTVDALEKKLAALEGGEAALAFSSG-MAAISTVLLALLKAGDHVVASDDLYGGTYRLFER 98
Query: 91 IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
+ GI V D D + +EAAI+ P T+L+ +E + N
Sbjct: 99 LLPKLGIEV------TFV----DPD-DPEALEAAIK--------PETKLVYVE-SPTNPT 138
Query: 151 GRCLSVEYTDSVGEIAKKHGLKLHID---GARIFNAAVALGVPVRRLVQAADSASVCLSK 207
+ + +E ++ E+A +HG L +D + LG + +V +A +K
Sbjct: 139 LKVVDIE---AIAELAHEHGALLVVDNTFATPYLQRPLELGADI--VVHSA-------TK 186
Query: 208 ---GLGAPVGSVIVG-SKEFIKKARRLRKTLGGGM 238
G + V+VG + I++ R LR LG +
Sbjct: 187 YIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTIL 221
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 42/216 (19%)
Query: 35 MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN 94
+PT LE +A + G EA L SG M + + L+ G V+ D+ +Y
Sbjct: 49 SGNPTRDALEERIAALEGGEAALAFSSG-MAAIFAALLALLKAGDHVVATDD----LY-- 101
Query: 95 GG-------ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147
GG + G+ V D + D+D +EAAI+ P T+ + LE T
Sbjct: 102 GGTYRLFEKVLPRFGIEVTFV----DPS-DLDALEAAIK--------PNTKAVFLE-TPT 147
Query: 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHID---GARIFNAAVALGVPVRRLVQAADSASVC 204
N + + +E ++ +IAKKHG + +D + + LG + +V SA+
Sbjct: 148 NPLLKVVDIE---AIAKIAKKHGALVVVDNTFASPYLQRPLELGADI--VVH---SATKY 199
Query: 205 LSKGLGAPVGSVIV--GSKEFIKKARRLRKTLGGGM 238
+ G VG V+V G +E K+ R L+ G +
Sbjct: 200 IG-GHSDVVGGVVVVNGREELAKRLRFLQNATGAVL 234
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 43/316 (13%)
Query: 43 LETEMAKVMG--------KEAGLFVPSGTMGNLISVL-VHCETRGSEVILGDNSHIHIYE 93
L +AK +G +EA + SG N+ +++ + G +++ ++
Sbjct: 46 LREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIR 105
Query: 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153
++ G V + ++ D +D D +EAA+++ ++ + H G
Sbjct: 106 IFRLAG-GEVVRYPLYSSNDFHLDFDALEAALKEATEGNK-----VVLHTSPHNPTG-TV 158
Query: 154 LSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQAADSASVC--LSKGLG 210
++E + + ++AK+H + L +D A F V R L+ + V SK G
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFG 218
Query: 211 AP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL------QENVLVMLD 261
VG I+G+ I + R+L L AAA AL + M
Sbjct: 219 LAGWRVGY-ILGNAAVISQLRKLA----RPFYSSTHLQAAAAAALSDPLLVASELEEMRQ 273
Query: 262 GDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMP 320
++ L +GL + + + +F +T A L + L EE GV V P
Sbjct: 274 RIKERRDYLRDGLEAA-----GLSVLPSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTP 328
Query: 321 ESS----TRVRIVVHH 332
SS +RI V
Sbjct: 329 GSSFGGPGWLRITVAG 344
|
Length = 357 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 43/206 (20%)
Query: 38 PTAFRLETEMAKVMGKEAGL--------FVPSGTMGNLISVLVH-------CETRGS--- 79
P A +E E+ + K GL F G+ NL+++L + G
Sbjct: 34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGI 93
Query: 80 ---EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136
++ D +H+ + + V R V ++DG MD + +EAAI + K E + P
Sbjct: 94 DKLVIVCSDQAHVSVEKAA---AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNP- 149
Query: 137 TRLIC----LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192
I T + G +++ + + ++A+K+ L LH+D A + + R
Sbjct: 150 ---IMVVATAGTT--DTG----AIDPLEEIADLAEKYDLWLHVDAA--YGGFLLPFPEPR 198
Query: 193 RL---VQAADSASVCLSKGLGAPVGS 215
L ++ DS SV K P+G
Sbjct: 199 HLDFGIERVDSISVDPHKYGLVPLGC 224
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 102 GVHPRTVKNNQDGTMDIDLI-EAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160
G V +++G +DL A + PK T+L+ L N N G LS E +
Sbjct: 104 GAEVVPVPLDEEGGFLLDLELLEAAKTPK-------TKLLYL-NNPNNPTGAVLSEEELE 155
Query: 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGAP---VGS 215
+ E+AKKHG+ + D A P L+ A + V SK G P +G
Sbjct: 156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGY 215
Query: 216 VIVGSKEFIKKARRLRKTLGGGMRQVG-VLCAAALVALQENVLVMLDGDHKKAKLLAEGL 274
+I +E +++ ++L G + AAAL +E++ + + ++ L E L
Sbjct: 216 LIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEAL 275
Query: 275 NQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
+L L V V ++ ++ E L + L E GV+V P
Sbjct: 276 KELGPLVV-VKPSGGFFLWLDLPEGDD--EEFLERLLLEAGVVVRP 318
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 76/358 (21%), Positives = 129/358 (36%), Gaps = 82/358 (22%)
Query: 13 VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGL-------FVPSGTMG 65
E + +A+ D D P A LE + ++ G F GT
Sbjct: 75 PPVAAELLVSALNKNLGDPDE---SPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEA 131
Query: 66 NLISVLVH----CETRGSE---------VILGDNSHIHIYENGGISTIGGVHPRTVKNNQ 112
NL+++L + +E ++ + +H + +G TV
Sbjct: 132 NLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-- 189
Query: 113 DGTMDIDLIEAAIRD--PKGEIV-----YPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165
D +D+D +E AI + G +V T S++ + + +I
Sbjct: 190 DYRIDVDALEEAIDENTIGGVVVGTAGTTDTG-----------------SIDDIEELADI 232
Query: 166 AKKHGLKLHIDGARIFNAAVA-----LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS 220
A+++G+ LH+D A F + G L + DS +V K AP+G +V
Sbjct: 233 AEEYGIWLHVDAA--FGGFLLPFLEPDGRWDFGL-EGVDSITVDGHKYGLAPIGCGVV-- 287
Query: 221 KEFIKKARRLRKTL--------GGGMRQVGVLC-------AAALVAL----QENVLVMLD 261
+ LR+ L GGG+ +L A L +E +LD
Sbjct: 288 --LFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLD 345
Query: 262 GDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM 319
+ A+ LAE L +L + + E IV F + +D A L ++L+ G V
Sbjct: 346 RTLELARYLAEELEKLGDFELVNE-PELPIVAFRLKDDEDTLAD-LSERLDRRGWQVP 401
|
Length = 460 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 82/339 (24%), Positives = 126/339 (37%), Gaps = 57/339 (16%)
Query: 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGN--LISVLVHCETRGSEVILGDNSHIHIYE 93
LE E+A+ GKEA L SG N ++S L +G +I +H I +
Sbjct: 44 TSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLA---GKGDLIISDSLNHASIID 100
Query: 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR-LICLENTHANCGGR 152
GI G R K+N D++ +E +R E P + LI E ++ G
Sbjct: 101 --GIRL-SGAKKRIFKHN-----DMEDLEKLLR----EARRPYGKKLIVTEGVYSMDGDI 148
Query: 153 CLSVEYTDSVGEIAKKHGLKLHID--------GARIFNAAVALGVPVRRLVQAADSASVC 204
E D +AKK+G L +D G G+ +
Sbjct: 149 APLPELVD----LAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDII-----MGT 199
Query: 205 LSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDH 264
L K GA VG I GSKE I R + + AAAL AL+ +L G
Sbjct: 200 LGKAFGA-VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALE-----VLQGGP 253
Query: 265 KKAKLLAEGLNQLKGL--RVDVDAVETN--IVYFEITEDSKLYAACLLKKLEEHGVLV-- 318
++ + L E + L+ + + I+ I +D A L E G+ V
Sbjct: 254 ERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAK-AVAFSDALLERGIYVQA 312
Query: 319 -----MPESSTRVRIVV--HHQISANDVHYTLSCFQKIY 350
+P + R+RI + H + D+ L +++
Sbjct: 313 IRYPTVPRGTARLRISLSAAH--TKEDIDRLLEALKEVG 349
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+DL +D+ T T+ AAM D+ + + L + + G + + G
Sbjct: 48 FIDLLTDSGTGAMTDKQWAAMMRG---DEAYAGSRSYYALADAVKDIFGFQYTIPTHQGR 104
Query: 64 MGN--LISVLVHCETR--GSEVILGDNSHI-----HIYENGGIST---IGGVHPRTVKNN 111
LI +L+ + GS+++ N H HI NG + VK
Sbjct: 105 GAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYP 164
Query: 112 QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G D++ +E I + + V I L T+ + GG+ +S+ +V EIAKK+ +
Sbjct: 165 FKGNFDLEKLERLIDEVGADNV----PYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDI 220
Query: 172 KLHIDGAR 179
+ +D AR
Sbjct: 221 PVVMDAAR 228
|
Length = 471 |
| >gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 49/199 (24%)
Query: 5 TVDLRSDTVTKPTEAMR----AAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVP 60
+DL +D+ T AM AAM D+ + + LE + + G + +
Sbjct: 22 YIDLLTDS---GTGAMSDYQWAAMMLG---DEAYAGSKSFYDLEDAVQDLFGFKHIIPTH 75
Query: 61 SGTMGNLISVLVHCETRGSEVIL-------GD----NSHI-----HIYENGGIS---TIG 101
G RG+E IL G N H HI NG + I
Sbjct: 76 QG--------------RGAENILFSILLKPGRTVPSNMHFDTTRGHIEANGAVPVDLVID 121
Query: 102 GVHPRTVKNNQDGTMDIDLIEAAIRDPKGE-IVYPTTRLICLENTHANCGGRCLSVEYTD 160
H G +D+ +E I + E I Y I L T+ GG+ +S+
Sbjct: 122 EAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPY-----IVLTITNNTAGGQPVSMANLR 176
Query: 161 SVGEIAKKHGLKLHIDGAR 179
V E+A K+G+ + +D AR
Sbjct: 177 EVRELAHKYGIPVVLDAAR 195
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. Length = 431 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 35 MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN--SHIHIY 92
+ +PT LE +A + G A L V SG ++L + GDN S ++Y
Sbjct: 54 LMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQA-------GDNIVSSSYLY 106
Query: 93 ENGGISTIG-------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145
GG + G+ R V + D D + E AI + T+ + E T
Sbjct: 107 --GGTYNLFKHTLKRLGIEVRFV--DPD---DPEEFEKAIDE--------NTKAVFAE-T 150
Query: 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCL 205
N +E ++ E+A HG+ L +D A R + AD
Sbjct: 151 IGNPAINVPDIE---AIAEVAHAHGVPLIVDN------TFATPYLCRPIDHGADIVVHSA 201
Query: 206 SK---GLGAPVGSVIVGSKEF 223
+K G G +G VIV +F
Sbjct: 202 TKYIGGHGTAIGGVIVDGGKF 222
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 36/199 (18%)
Query: 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH----IYENGGI 97
R E A+ +G + + V SGT +++L G EVI+ + + + G
Sbjct: 38 RFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAK 97
Query: 98 STIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157
+ P T +D DLIEAAI P T+ I + +
Sbjct: 98 PVFVDIDPDT------LNIDPDLIEAAIT--------PRTKAIIPVHLAGQ------PCD 137
Query: 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAAD--SASVCLSKGLGAPV 213
D++ +AK+HGL + I +AA A G +++ D + S +K L
Sbjct: 138 M-DAIMALAKRHGLPV------IEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGE 190
Query: 214 GSVIVG-SKEFIKKARRLR 231
G +V +E +KAR LR
Sbjct: 191 GGAVVTNDEELAEKARSLR 209
|
Length = 374 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 35/165 (21%)
Query: 27 AEVDDDVLMHDPTAFRLETE--MAKVMGKEAGLFVPSGT-MGNLISVLVHCETRGSEVIL 83
+DD + DPT E + A+ G + F+ +GT N +L C G ++++
Sbjct: 49 TGLDD---LLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-GPGDKILI 104
Query: 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDI-------DLIEAAI--RDPKGEIV- 133
N H + NG + + G P +K ++ I +A I D K ++
Sbjct: 105 DRNCHKSVI-NGLV--LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVIT 161
Query: 134 YPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA 178
PT IC N + E A GL + +D A
Sbjct: 162 NPTYYGIC-----YN----------LRKIVEEAHHRGLPVLVDEA 191
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 69/335 (20%), Positives = 117/335 (34%), Gaps = 62/335 (18%)
Query: 18 EAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCET 76
+ A + + + P E A +G + L V SGT +++
Sbjct: 3 DEEELAAVTEVLRSGWLTTGGPEVRAFEKAFAAYLGVKHALAVSSGTSALHLALRALGIG 62
Query: 77 RGSEVILGDNSHIH----IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEI 132
G EVI+ + + + + G V P T +D IEAAI
Sbjct: 63 PGDEVIVPAFTFVATANAVLQLGATPVFVDVDPDT------YNIDPAAIEAAIT------ 110
Query: 133 VYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192
P T+ I + + D++ IA +HGL + I +AA A G +
Sbjct: 111 --PRTKAIMPVHLYGQPAD-------MDAIRAIAAEHGLPV------IEDAAHAHGATYK 155
Query: 193 -RLVQAADSASV-------CLSKGLGAPVGSVIVGSKEFIKKARRLR---KTLGGGMRQV 241
+ V A+ ++ G G G+V+ E ++AR LR R
Sbjct: 156 GKRVGTFGDAATFSFYPTKNITTGEG---GAVVTDDPELAERARCLRNHGCGRPAFRRYR 212
Query: 242 GV-----------LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKG---LRVDVDAV 287
L AA +A E + + + A+L +E L +L G L + +
Sbjct: 213 HEVPLGYNYRLTELQAAIGLAQLERLDEFIARRREIAELYSELLAELPGFVPLTLPTEED 272
Query: 288 ETNIVYFEIT--EDSKLYAACLLKKLEEHGVLVMP 320
+ F I E+ + L++ L+E G+
Sbjct: 273 DHAWHLFPILVPEERAISRDRLVEALKEAGIGTRV 307
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI--RDPKGEI---VYPTTR 138
D +H I + I GV R + +++G M +E AI G I V T
Sbjct: 147 SDQAHSSIEKAA---LIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATL- 202
Query: 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-VRRL--- 194
T + + + +G+I K+ L LH+D A A A P R
Sbjct: 203 -----GTTGSG-----AFDPLQELGDICNKYDLWLHVDAA---YAGSAFICPEFRHWLFG 249
Query: 195 VQAADSASVCLSKGLGAPVG 214
++ ADS S K + +
Sbjct: 250 IERADSFSFNPHKWMLVLLD 269
|
Length = 373 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 40/196 (20%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD-------NSHIH 90
PT LE +A + G A L V SG ++L G ++ N H
Sbjct: 62 PTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGA-GDNIVSSSKLYGGTYNLFSH 120
Query: 91 IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
+ GI R V + D + EAAI T+ + E T N G
Sbjct: 121 TLKRLGIEV------RFVDPD-----DPENFEAAID--------ENTKAVFAE-TIGNPG 160
Query: 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSK--- 207
L +E ++ EIA +HG+ L +D A R + AD +K
Sbjct: 161 LDVLDIE---AIAEIAHRHGVPLIVD------NTFATPYLCRPIEHGADIVVHSATKYIG 211
Query: 208 GLGAPVGSVIVGSKEF 223
G G +G VIV +F
Sbjct: 212 GHGTAIGGVIVDGGKF 227
|
Length = 426 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 36/190 (18%)
Query: 58 FVPSGTMG-NLIS-VLVHCETRGSEVILGD---NSHIHIYENGGISTIGGVHPRTVKNNQ 112
F T NL++ L G E+++ D +S+I ++ ++ G R + +
Sbjct: 89 FTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQE--LAKRTGAKVRVIPLDD 146
Query: 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA-NCGGRCLSVEYTDSVGEIAKKHGL 171
DG +D+D +E I P T+L+ L +H N G V+ + E+A +HG
Sbjct: 147 DGLLDLDALEKLIT--------PKTKLVAL--SHVSNVTGTVNPVK---EIAELAHEHGA 193
Query: 172 KLHIDGARIFNAAVALGVPVRRL-VQAADSASVCLS--KGLGAPVGS-VIVGSKEFIKKA 227
+ +D A+ + VQ + S K L P G V+ KE +
Sbjct: 194 LVLVDAAQ--------AAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELL--- 242
Query: 228 RRLRKTLGGG 237
L LGGG
Sbjct: 243 EELEPFLGGG 252
|
Length = 405 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 39/191 (20%)
Query: 111 NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN--CGGRCLSVEYTDSVGEIAKK 168
+ +G +D++ +E A+R T L+ + HAN G +++ +GEI K+
Sbjct: 124 DSNGLVDLEQLEEALRPD--------TILVSI--MHANNETG----TIQPIAEIGEICKE 169
Query: 169 HGLKLHIDGARIFNAAVALG-VPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKA 227
G+ H+D A A+G +P+ D S K G P G + +++
Sbjct: 170 RGILFHVD------AVQAVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGAL----YVRPG 218
Query: 228 RRLRKTL-GGG----MRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKG 279
RL + GGG +R G +V E + L+ ++ + + L + L G
Sbjct: 219 VRLEPLIHGGGQERGLRS-GTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRL--EDG 275
Query: 280 LRVDVDAVETN 290
L + V N
Sbjct: 276 LLEIIPDVYLN 286
|
Length = 386 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 102 GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA-NCGGRCLSVEYTD 160
G + V + DG +D++ +E + + T+L+ + TH N G V+
Sbjct: 113 GAKLKVVPVDDDGQLDLEALEKLLTE--------RTKLVAV--THVSNVLGTINPVK--- 159
Query: 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194
+GEIA + G+ + +DGA+ +A + V V+ L
Sbjct: 160 EIGEIAHEAGVPVLVDGAQ---SAGHMPVDVQDL 190
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 203 VCLSKGL--GAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG------VLCAAALVALQE 254
V L KGL G P+G ++G +E + G G + CAAAL L+
Sbjct: 256 VTLGKGLGGGLPLG-AVLGREEIMDAFP------AGPGLHGGTFGGNPLACAAALAVLE- 307
Query: 255 NVLVMLDGD-----HKKAKLLAEGLNQLK---GLRVDVDAVETNIVYFEITEDSKL---- 302
V+ + + + L E L +L L DV I E+ +D
Sbjct: 308 ---VLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIG-IELVKDRATKPPD 363
Query: 303 --YAACLLKKLEEHGVLVMPESSTRVRI 328
AA ++K E G+L+ P +R+
Sbjct: 364 KELAAKIIKAALERGLLLRPSGGNVIRL 391
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 50/213 (23%)
Query: 102 GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA-NCGGRCLSVEYTD 160
G R + + +G +D+D +E + P T+L+ + TH N G VE
Sbjct: 113 GATVRVIPVDPNGLLDLDALEKLLT--------PRTKLVAI--THVSNVTGTVNPVE--- 159
Query: 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVG 219
+G++A ++G + +D A+ A + V+ L D + K G P G V+ G
Sbjct: 160 EIGKLAHEYGALVVVDAAQ---AVGHRPIDVQAL--GVDFLAFSGHKLYG-PTGIGVLYG 213
Query: 220 SKEFIKKARRLRKTLGGGMRQVGVLCA-----------------AALVALQENVLVMLDG 262
++ ++K L GGGM L A ++ L L L
Sbjct: 214 RRDLLEKLPPLL--GGGGMIDTVSLQETTFADAPSKFEAGTPNIAGIIGLGA-ALDYLAE 270
Query: 263 ---------DHKKAKLLAEGLNQLKGLRVDVDA 286
+ + A L E L + G+R+
Sbjct: 271 IGLEAIEKHERELAAYLYERLLAIPGIRLYGPP 303
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 34/161 (21%)
Query: 111 NQDG--TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168
DG +D D +E A D + +L L N H N GR + E + E+ +
Sbjct: 138 EDDGRYEIDFDALEKAFVDER-------VKLFILCNPH-NPTGRVWTKEELRKIAELCLR 189
Query: 169 HGLKL-----HID----GARIFNAAVALGVPVRRLVQAADSASVCL--SKGLGAP---VG 214
HG+++ H D G + A +L AD++ SK
Sbjct: 190 HGVRVISDEIHADLVLGGHKHIPFA-SLSERF------ADNSITLTSASKTFNLAGLKCA 242
Query: 215 SVIVGSKEFIKKA-RRLRKTLGGGMRQVGVLCAAALVALQE 254
+I+ ++E K +RL++ G +G++ A A +
Sbjct: 243 YIIISNRELRAKFLKRLKRNGLHGPSALGII--ATEAAYNQ 281
|
Length = 388 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 47/216 (21%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT LE +A++ G E SG M + + L+ G V+L D+ +Y GG
Sbjct: 63 PTRDALEEALAELEGGEDAFAFSSG-MAAISTALLALLKAGDHVLLPDD----LY--GGT 115
Query: 97 ------ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
I GV V D + +EAAI++P T+L+ LE T +N
Sbjct: 116 YRLFEKILQKFGVEVTFV-----DPGDDEALEAAIKEPN-------TKLVFLE-TPSN-- 160
Query: 151 GRCLSVEYTD--SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD----SASVC 204
+E D ++ +AK +G + +D A V R L AD SA+
Sbjct: 161 ---PLLEVPDIPAIARLAKAYGALVVVDN------TFATPVLQRPLELGADIVVHSATKY 211
Query: 205 LSKGLGAPVGSVIVGSKEFIKKARR--LRKTLGGGM 238
L G +G V++ E + + R G +
Sbjct: 212 LG-GHSDVLGGVVLTPNEELYELLFFAQRANTGAVL 246
|
Length = 396 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 79/343 (23%), Positives = 130/343 (37%), Gaps = 76/343 (22%)
Query: 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIG 101
LE E+A +G EA L SG + NL +L +G + + +H I + GI
Sbjct: 88 ELEEELADFLGAEAALLFSSGFVANL-GLLSALLKKGDLIFSDELNHASIID--GIRLSR 144
Query: 102 GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161
R K+N D+D +EA LE N R L V T+
Sbjct: 145 AEV-RRFKHN-----DLDHLEAL-----------------LEEARENGARRKLIV--TEG 179
Query: 162 V----G---------EIAKKHGLKLHID--------GARIFNAAVALGVPVRRLVQAADS 200
V G E+A+K+G L++D G A G+ + D
Sbjct: 180 VFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEV----DI 235
Query: 201 ASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV---LCAAALVALQENVL 257
L K LG+ G I GS I LR + + + AAAL AL+
Sbjct: 236 IVGTLGKALGS-SGGYIAGSAALIDY---LRNRARPFIFSTALPPAVAAAALAALR---- 287
Query: 258 VMLDGDHKKAKL---LAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314
++ +G ++ +L A + LK L + + E+ I+ + ++ + A + L E
Sbjct: 288 ILEEGPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEER--ALEASRALLEE 345
Query: 315 GVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
G+ V +P+ + R+RI + + D+ ++
Sbjct: 346 GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388
|
Length = 388 |
| >gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 51/200 (25%)
Query: 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHD------PTAFRLETEMAKVMGKEAGLF 58
+DL +D+ T AM +A ++ D + +RLE + + G
Sbjct: 47 FIDLLTDS---GTGAMSDRQWAA-----MMRGDEAYAGSRSYYRLEDAVKDIFGYP--YT 96
Query: 59 VPSGTMGNLISVLVHCETRGSEVIL-------GD----NSHI-----HIYENGGIS---T 99
+P H + R +E IL GD N H HI NG +
Sbjct: 97 IP-----------TH-QGRAAEQILFPVLIKKGDVVPSNYHFDTTRAHIELNGATAVDLV 144
Query: 100 IGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159
I ++ G D++ +EA I + E V I + T+ + GG+ +S+
Sbjct: 145 IDEALDTGSRHPFKGNFDLEKLEALIEEVGAENV----PFIVMTITNNSAGGQPVSMANL 200
Query: 160 DSVGEIAKKHGLKLHIDGAR 179
+V EIAKK+G+ + ID AR
Sbjct: 201 RAVYEIAKKYGIPVVIDAAR 220
|
Length = 460 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 32/198 (16%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH--IHIYEN 94
+PT LE MA + G EA + + SG MG + + L G EVI+ + + +
Sbjct: 64 NPTLALLEQRMASLEGGEAAVALASG-MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLH 122
Query: 95 GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL 154
G+ G V D ++AAI TR++ E T AN R +
Sbjct: 123 HGLGEFG------VTVRHVDLTDPAALKAAIS--------DKTRMVYFE-TPANPNMRLV 167
Query: 155 SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD----SASVCLSKGLG 210
+ +V EIA G K+ +D R L AD SA+ L G G
Sbjct: 168 DIA---AVAEIAHGAGAKVVVDN------TYCTPYLQRPLELGADLVVHSATKYLG-GHG 217
Query: 211 APVGSVIVGSKEFIKKAR 228
++VG K + R
Sbjct: 218 DITAGLVVGGKALADRIR 235
|
Length = 403 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 53/216 (24%)
Query: 131 EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP 190
+V P T+LIC+ N + N G + Y + + EIA+ A + + V
Sbjct: 148 RLVRPNTKLICINNAN-NPTGALMDRAYLEEIVEIARSV-------DAYVLSDEVYRP-- 197
Query: 191 VRRLVQAADSASVC-----------LSKGLGAP---VGSVIVGSKEFIKKARRLR--KTL 234
L + + S+ +SK P VG I ++E I R+ R +
Sbjct: 198 ---LDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGW-IAANEEVIDILRKYRDYTMI 253
Query: 235 GGGM--RQVGVL---CAAALVA-----LQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284
G+ + L A++ ++ N+ ++ + K+ ++ V
Sbjct: 254 CAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSY----------VKP 303
Query: 285 DAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
AV T+ V ++ S C LK L+E GVL++P
Sbjct: 304 KAVSTSFVKLDVDMPS--EDFC-LKLLKETGVLLVP 336
|
Length = 373 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 100.0 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 100.0 | |
| PLN02721 | 353 | threonine aldolase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 100.0 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.98 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.98 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.98 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.98 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.98 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.98 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.98 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.97 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.97 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.97 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.97 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.97 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| PLN02397 | 423 | aspartate transaminase | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.97 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.97 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.97 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.97 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.97 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.97 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.97 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.97 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.97 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.97 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.97 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.97 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.97 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.97 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.97 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.97 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.97 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.97 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.97 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.97 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.97 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.97 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.97 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.97 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.97 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.97 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.97 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.97 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.97 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.97 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.97 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.97 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.96 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.96 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.96 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.96 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.96 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.96 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.96 | |
| PLN02651 | 364 | cysteine desulfurase | 99.96 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.96 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.96 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.96 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.96 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.96 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.96 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.96 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.96 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.96 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.96 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.96 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.96 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.96 | |
| PLN02368 | 407 | alanine transaminase | 99.96 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.96 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.96 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.96 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.96 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.96 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.96 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.96 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.96 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.96 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.96 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.96 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.96 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.96 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.95 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.95 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.95 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.95 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.95 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.95 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.95 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.95 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.95 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.95 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.95 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.95 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.95 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.95 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.95 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.95 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.95 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.95 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.94 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.94 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.94 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.94 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.94 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.94 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.94 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.94 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.94 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.94 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.94 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.94 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.94 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.94 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.94 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.94 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.94 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.94 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.94 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.94 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.93 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.93 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.93 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.93 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.93 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.93 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.92 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.92 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.92 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.92 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.92 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.92 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.92 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.92 | |
| PLN02263 | 470 | serine decarboxylase | 99.92 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.92 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.92 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.92 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.92 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.92 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.92 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.92 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.92 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.92 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.92 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.92 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.92 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.92 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.91 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.91 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.91 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.91 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.91 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.91 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.91 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.91 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.91 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.91 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.91 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.91 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.91 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.91 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.91 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.91 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.91 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.91 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.91 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.91 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.91 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.9 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.9 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.9 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.9 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.9 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.9 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.9 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.9 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.9 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.9 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.9 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.9 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.9 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.9 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.9 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.89 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.89 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.89 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.89 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.89 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.88 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.88 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.88 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.88 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.87 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.87 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.87 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.87 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.87 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.86 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.86 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.83 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.83 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.83 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.82 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.82 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.81 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.81 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.81 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.81 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.8 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.79 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.78 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.78 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.77 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.75 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.74 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.73 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.73 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.68 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.67 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.66 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.66 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.61 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.61 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.58 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.58 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.54 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.52 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.52 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.51 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.44 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.42 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.33 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 99.29 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.29 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.28 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 99.06 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.98 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 98.25 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.96 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 93.41 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 83.83 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 83.31 | |
| COG2870 | 467 | RfaE ADP-heptose synthase, bifunctional sugar kina | 80.42 |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=326.26 Aligned_cols=345 Identities=63% Similarity=0.966 Sum_probs=323.3
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
++.+||+||+.+.|+.+++++|.++..++..|+.++...+||+++|+++|.+.++|++|||++++.+++..+.++|.+|+
T Consensus 21 ~~~vDLRSDTvT~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii 100 (384)
T KOG1368|consen 21 HRSVDLRSDTVTVPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEII 100 (384)
T ss_pred eeccccccccccCChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+.+.+|...|+++++..+.|+.+..+...+++.++++++++.+.....+-+.+.+++|+++|+++|.+|.++|.|+++++
T Consensus 101 ~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v 180 (384)
T KOG1368|consen 101 VGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRV 180 (384)
T ss_pred eccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHH
Confidence 99999999999999999999999999888999999999999999755567778999999999999988999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhH
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG 242 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (359)
.++|+++|+.+++|+|+.|.+....+.+...+...+|.+++.+||.+|.|.|++++++++++++.+.++...|+++++++
T Consensus 181 ~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsG 260 (384)
T KOG1368|consen 181 KALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSG 260 (384)
T ss_pred HHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999998889999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC
Q 018243 243 VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES 322 (359)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 322 (359)
.++++++.++++-.. .++..++++..|.+.+...+++.+..+....+++.+.+.. ..++++++++.+.++||.+..+.
T Consensus 261 vLaaaaLval~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q-~~~~~~~l~~~~~k~gi~lm~~~ 338 (384)
T KOG1368|consen 261 VLAAAALVALDENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQ-ARLTAEELCKFLEKNGILLMGGA 338 (384)
T ss_pred HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeeccc-ccCCHHHHHHHHHHCCeEEeecc
Confidence 999999999988777 7778889999999999988778886666789999988865 46899999999999999999998
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 323 STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 323 ~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
...+|+.+++..++++++.++..+.+.
T Consensus 339 s~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 339 SRRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred ccceEEEEEEecCHHHHHHHHHHHHHH
Confidence 889999999999999999999999543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=296.86 Aligned_cols=338 Identities=41% Similarity=0.617 Sum_probs=295.0
Q ss_pred cccccCCCCCChHHHHHHHHHcCC-CCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAE-VDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
++||+|||..+|+|+++++|.++. .+...|+.++...++++.+++.++....+|++|||+||..+|..++ +|+..|++
T Consensus 1 ~~~f~SDn~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~-~~~~~vi~ 79 (342)
T COG2008 1 MIDFRSDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHC-QPGESVIC 79 (342)
T ss_pred CCccccCccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhc-CCCCeEEE
Confidence 589999999999999999999988 5688999999999999999999999878999999999999999999 69999999
Q ss_pred cCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
...+|...+++|++..+.+...+.+....+|.+++++++..+.. ++.+...+.+++++++++ ..|.+||.+++++|.
T Consensus 80 ~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~--~d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~ 156 (342)
T COG2008 80 HETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP--DDIHHAPTPLAVLENTAT-EGGTVYPLDELEAIS 156 (342)
T ss_pred eccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC--CCcccCCCceEEEeeccC-CCceecCHHHHHHHH
Confidence 99999999999988888887777777778999999999999985 443445666666667666 679999999999999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHH
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (359)
++|+++|+.|++|+++.+......+.+...+..++|++++++||.++.|.|++++++.+++++++.+++..|..++...+
T Consensus 157 ~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~ 236 (342)
T COG2008 157 AVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARF 236 (342)
T ss_pred HHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhH
Confidence 99999999999999998888888888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHH--HHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC
Q 018243 244 LCAAALVALQENVLVMLDGDHKK--AKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE 321 (359)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~--~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 321 (359)
+++.....+++.+. ++...+++ +.+|.+.|.+.||+++..+ ..+|++|+.++. ..++.......+...|+.+.+.
T Consensus 237 laA~~~~~l~~~~~-~~~~~Han~mA~~La~~~~~~~G~~~~~~-~~tN~vf~~l~~-~~i~~l~~~~~~~~~~~~~~~~ 313 (342)
T COG2008 237 LAAQGLYALEDDVW-RLAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFVRLPE-SAIEALRLAGALFYRGVLIGAH 313 (342)
T ss_pred HHHHHHHHHhccHH-HHHHHHHHHHHHHHHHhhhhcCCceeccC-CcccEEEEECCh-HHHHHHHhhchhheeeeeccCC
Confidence 99999999988776 44555555 9999999998889999654 799999999987 2334444555555666665444
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 ~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+ ..+|+.+++..+++++++++..+++++
T Consensus 314 ~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 314 G-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred C-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 3 579999999999999999999998764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=305.30 Aligned_cols=350 Identities=81% Similarity=1.195 Sum_probs=276.4
Q ss_pred CccccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 1 ~~~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
|..++++|+++++..|.+.+.+++.+.......+.+++...++|+.++++++.+..+++++|++++..++..++..+||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~ 82 (353)
T PLN02721 3 MVSRVVDLRSDTVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSE 82 (353)
T ss_pred hhhhhhhhhcccccCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCe
Confidence 56789999999999999999999987423333455677789999999999999888999999999887777766338999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|++++++|++.++.+..+...|++++.++.++++.+|++.+++.+++.. ..+.+++++|+++++++||||.+++.++++
T Consensus 83 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~~v~l~~~~~np~G~~~~~~~l~ 161 (353)
T PLN02721 83 VILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKG-DDHFPTTRLICLENTHANCGGRCLSVEYTD 161 (353)
T ss_pred EEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhcc-CCCCCcceEEEEeccccccCCccccHHHHH
Confidence 9999999988776322467789999999877788899999999997421 111147889999999999999999999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcch
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
+|.++|+++|+++|+|++|.++.....+.....+..++|.++.|+||+++++.|++++.++++++.+.......+.....
T Consensus 162 ~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T PLN02721 162 KVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKTLGGGMRQ 241 (353)
T ss_pred HHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHHHhcCCCeeh
Confidence 99999999999999999987665332344444444578888889999999887777888999988887776665554443
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceecc
Q 018243 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320 (359)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 320 (359)
.+..++++..+++...+ ..++..++++++.+.|++++++.+...+..++++|++++.....+...+.++|.++||.+.+
T Consensus 242 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~ 320 (353)
T PLN02721 242 VGVLAAAALVALQENVP-KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMP 320 (353)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEec
Confidence 44444555566666555 44455667889999999987886522234677888888642113678999999999999999
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 321 ESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 321 ~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.+++|+++++.++++++++++++|++++..
T Consensus 321 ~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 321 GNSSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred CCCceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 99899999998889999999999999987653
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=287.07 Aligned_cols=329 Identities=26% Similarity=0.284 Sum_probs=259.9
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhCCC--------C-eEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMGKE--------A-GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~--------~-~~~~~~gt~a~~~~l~~ 72 (359)
.+|||..+.+..+. +.+.+++.++..... .|....+..+||+++++++... . .++++++++|+..++.+
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a 108 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLA 108 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 57999999987776 568888777555432 5668899999999999887543 2 25555666788888888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC---CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN---QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
++ .+||+|++++|.|.+ |. ....+.|.+++.++.. .++.+|+++|++.++ +++++|++ +.+|||
T Consensus 109 ~~-~pGDeVlip~P~Y~~-y~--~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~--------~ktk~i~l-n~P~NP 175 (393)
T COG0436 109 LL-NPGDEVLIPDPGYPS-YE--AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT--------PKTKAIIL-NSPNNP 175 (393)
T ss_pred hc-CCCCEEEEeCCCCcC-HH--HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC--------ccceEEEE-eCCCCC
Confidence 88 599999999999666 54 4588889999999753 479999999999999 89999999 667779
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC---chhHhhhcCcc-EEEE-eccccCCCcee--eEEecC-H
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG---VPVRRLVQAAD-SASV-CLSKGLGAPVG--SVIVGS-K 221 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~~~d-~~~~-s~~K~~g~~~g--g~~~~~-~ 221 (359)
||.+++.+++++|.++|++||++||.||+|.- +.+.+ .+..++....| .+++ |+||.++++++ ||++++ +
T Consensus 176 TGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~--l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~ 253 (393)
T COG0436 176 TGAVYSKEELKAIVELAREHDIIIISDEIYEE--LVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE 253 (393)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEEEehhhhh--cccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH
Confidence 99999999999999999999999999999643 33333 33444432223 4444 99999998766 999998 8
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEe
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
++++.+..+......+. +...+.++..+|+ ...+..++.+.++++.+.+.|.+.+|+.+..++.+++++|+.+
T Consensus 254 ~l~~~~~~~~~~~~~~~--~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i 331 (393)
T COG0436 254 ELIAALRKLKSYLTSCA--PTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKI 331 (393)
T ss_pred HHHHHHHHHHHhcccCC--CHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeec
Confidence 89898887777776665 4456666666664 2444455779999999999999997899876567899999999
Q ss_pred ccchHHHHHHHHHHH-HhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKL-EEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l-~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.. .+..+|+.+| .++||.++|| +.+++|+++ ..+.++++++++++.++++.+
T Consensus 332 ~~~--~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~--~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 332 PEL--LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSL--ATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred CCC--CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEE--ecCHHHHHHHHHHHHHHHHhc
Confidence 863 5888999998 8889999886 346899999 577799999999999988764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=276.82 Aligned_cols=332 Identities=44% Similarity=0.717 Sum_probs=256.6
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
+|||+|++.++|+|.+.+++.+...+...|++.+...+|++.+++++|.+..+++++|++++..++.+++ .+|++|+++
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~-~~gd~vi~~ 79 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC-ERGEEYIVG 79 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc-CCCCeeEEe
Confidence 5899999999999999999988666666788889999999999999999988999999999998888887 599999999
Q ss_pred CCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
.++|...+..+......+++++.++.+.++.+|+++|++.++... .+..++++|+++++ ++|.+++.+++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~lv~l~np---~~G~v~~~~~l~~i~~ 154 (333)
T PRK10534 80 QAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDD--IHFARTRLLSLENT---HNGKVLPREYLKQAWE 154 (333)
T ss_pred chhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccC--cCcccceEEEEecC---CCCeecCHHHHHHHHH
Confidence 888755454111122334677777777788999999999986210 00016889999643 4699999999999999
Q ss_pred HHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHH
Q 018243 165 IAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 165 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (359)
+|++|++++++||+|.++.....+.....+....|.++.|+||.++++.|+++++++++++.++.+...++..++.....
T Consensus 155 ~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (333)
T PRK10534 155 FTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGIL 234 (333)
T ss_pred HHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHHHHHhCCchhhHHHH
Confidence 99999999999999875443222333333333456666799999998777788899999999988877666555555566
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCc
Q 018243 245 CAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESST 324 (359)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 324 (359)
++++..++++..+ .+++..+.++++.+.|+++ |+++. + +.++|++++++. .+..++.+.|.++||.+.++.
T Consensus 235 ~a~~~~~l~~~~~-~~~~~~~~r~~l~~~L~~~-g~~~~-~-~~~nfv~~~~~~---~~~~~~~~~l~~~gi~v~~~~-- 305 (333)
T PRK10534 235 AAAGLYALKHNVA-RLQEDHDNAAWLAEQLREA-GADVM-R-QDTNMLFVRVGE---EQAAALGEYMRERNVLINASP-- 305 (333)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhC-CCccC-C-CCceEEEEECCc---hhHHHHHHHHHHcCeeecCCc--
Confidence 6666667765443 4455556778999999998 88874 3 379999999874 256788889999999998764
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 325 RVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 325 ~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+|++.+..++++++++++++|++++.
T Consensus 306 ~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 306 IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 589987667899999999999987654
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=265.45 Aligned_cols=333 Identities=43% Similarity=0.619 Sum_probs=252.7
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCC
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~ 86 (359)
||+++++.+|+|.+++++.+.......|+..+...++++.+++++|.+..++++||++++..++..++ ++|+.|+++.+
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~-~~gd~v~~~~~ 79 (338)
T cd06502 1 DFRSDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHT-QPGGSVICHET 79 (338)
T ss_pred CcccccCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhc-CCCCeEEEecC
Confidence 79999999999999999988654444566678889999999999995567899999999988888887 59999999999
Q ss_pred CcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 87 SHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
+|.+.+.........|++++.++.+. +.+|++++++.+++..+ .+.+++++|++++++| | |..++.+++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~-~~~~~~~~v~l~~p~n-~-g~~~~~~~l~~i~~~~ 155 (338)
T cd06502 80 AHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDD-IHFPPPSLVSLENTTE-G-GTVYPLDELKAISALA 155 (338)
T ss_pred cceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCC-CcCCcceEEEEEeecC-C-ccccCHHHHHHHHHHH
Confidence 99887652112445788999887654 77899999999974211 1113688999977654 7 5566889999999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA 246 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (359)
+++|+++|+|++|.++.....+.....+..++|+++.|+||+||+|.|++++.++++++.++.....++++.+.++..++
T Consensus 156 ~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (338)
T cd06502 156 KENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAA 235 (338)
T ss_pred HHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 99999999999986554332333334444578888889999999887777778999999988776666555555666666
Q ss_pred HHHHHHHHh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH---hcCceeccCC
Q 018243 247 AALVALQEN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE---EHGVLVMPES 322 (359)
Q Consensus 247 ~~~~~l~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gi~~~~~~ 322 (359)
++..+++.. ..+..++..++++++.+.|+++ ++.+. +..++++.+.++.. ......+.+.+. ++|+.+.+.+
T Consensus 236 a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~v~~~~~-~~~~~~l~~~l~~~~~~gi~~~~~~ 311 (338)
T cd06502 236 AGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGLES--EVQTNIVLLDPVEA-NAVFVELSKEAIERRGEGVLFYAWG 311 (338)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCcc--cccCCeEEEecCCc-cHHHHHHHHHHHHhhhCCEEEEecC
Confidence 667777541 2235677778889999999998 66543 34678888877531 123334444443 6899987766
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 323 STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 323 ~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
..++|++++..+++++++++++++++
T Consensus 312 ~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 312 EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 68999999988999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=250.44 Aligned_cols=326 Identities=22% Similarity=0.260 Sum_probs=270.6
Q ss_pred cccccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.|+++.+-. |.+++++.++... ...+|..+.+.+||+++++++|.+.+++++||-.||..++.+
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~ 118 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSA 118 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHH
Confidence 457999999887554 7777766654322 224677889999999999999999999999999999999999
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++. ++|.|+.+...|.+.+. + +++.+++.+.+.++ |++.|++.+++..... .+.++|+++...+ ..|.
T Consensus 119 l~~-~~dli~~D~lnHASiid-G--~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~--~~~~~IvtegVfS-MdGd 186 (388)
T COG0156 119 LLK-KGDLIFSDELNHASIID-G--IRLSRAEVRRFKHN-----DLDHLEALLEEARENG--ARRKLIVTEGVFS-MDGD 186 (388)
T ss_pred hcC-CCcEEEEechhhhhHHH-H--HHhCCCcEEEecCC-----CHHHHHHHHHhhhccC--CCceEEEEecccc-CCCC
Confidence 994 89999999999999887 6 78999999999887 9999999998633111 1568999999999 6788
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
+.| +.+|++++++|++++++||+|+.|..+..|....+.. ...|+++.|++|.|| ..||++.++..+.+.++
T Consensus 187 iAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g~~~~~d~L~ 262 (388)
T COG0156 187 IAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAGSAALIDYLR 262 (388)
T ss_pred cCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeCcHHHHHHHH
Confidence 887 8999999999999999999999999987777666443 234788889999999 49999999999999998
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHHhHH--HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQENVL--VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
.....+-.+++.++..++++..+++...+ +++++..++..++++.++.. ++.+. +..++++.+.+.++ ..+.+
T Consensus 263 ~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~--~s~s~I~pv~~gd~--~~a~~ 337 (388)
T COG0156 263 NRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL-GLVLL--PSESPIIPVILGDE--ERALE 337 (388)
T ss_pred HhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCccC--CCCCCeeeeEeCCH--HHHHH
Confidence 88787888888888888888888754432 37778888889998777776 77653 55888888888763 46888
Q ss_pred HHHHHHhcCcee-------ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 307 ~~~~l~~~gi~~-------~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+...|.+.||.+ +|.+...+|++++..++++|++.+++++.++
T Consensus 338 ~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 338 ASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 999998889988 5567788999999999999999999999764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=259.38 Aligned_cols=328 Identities=19% Similarity=0.155 Sum_probs=242.2
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC----C--C--CeEE-cCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG----K--E--AGLF-VPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~----~--~--~~~~-~~~gt~a~~~~l~~ 72 (359)
..|||..+.+..+ .+.+.+++.+.... ...|+..++..+|++.++++++ . + ..++ ++|+++++..++..
T Consensus 55 ~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~ 134 (413)
T PLN00175 55 GAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILG 134 (413)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence 5689998877655 36777777664432 3468778889999999998874 2 1 2354 44556777777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ ++||.|++++|+|.. +. ..++..|++++.++.+ +++.+|+++|++.++ +++++|++ +.++||||
T Consensus 135 l~-~~gd~Vlv~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~--------~~~k~i~i-~~p~NPtG 201 (413)
T PLN00175 135 LI-NPGDEVILFAPFYDS-YE--ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT--------SKTRAILI-NTPHNPTG 201 (413)
T ss_pred hC-CCCCEEEEeCCCchh-HH--HHHHHcCCEEEEEECCcccCCCCHHHHHHhcC--------cCceEEEe-cCCCCCCC
Confidence 77 599999999999765 44 3477889999999765 357889999999998 67899988 45667999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-CccEE-EEeccccCCCcee--eEEecCHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSA-SVCLSKGLGAPVG--SVIVGSKEFIKKA 227 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~-~~s~~K~~g~~~g--g~~~~~~~~~~~~ 227 (359)
.+++.+++++|+++|++|+++||+||+|....+.....+...+.. ...++ +.|+||.|+.|+. ||+++++++++.+
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l 281 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 281 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHH
Confidence 999999999999999999999999999754433211223333321 12244 4599999986554 9999999999998
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH-H
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL-Y 303 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 303 (359)
.........+. +...+.++...++ .+.++.++.+.++++.+.+.|++. |+++. ++.++.++|++++. .+. +
T Consensus 282 ~~~~~~~~~~~--s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~~f~~~~~~~-~~~~~ 356 (413)
T PLN00175 282 RQAHSFLTFAT--ATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKVY-PSSGTYFVMVDHTP-FGFEN 356 (413)
T ss_pred HHHHhhccCCC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEeccc-cCCCC
Confidence 87766555444 3344444555553 445557778889999999999998 88764 45577789998743 122 4
Q ss_pred HHHHHHHH-HhcCceeccCC---------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPES---------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.++| +++||.+.|+. .+++||+++ .+++++++.+++|.++++
T Consensus 357 ~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 357 DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 67888888 57899997652 358999996 589999999999998775
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=255.88 Aligned_cols=332 Identities=15% Similarity=0.138 Sum_probs=240.5
Q ss_pred ccccccCCCCC--ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CCC----C-eEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVT--KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GKE----A-GLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~~----~-~~~~~~gt~a~~~~l 70 (359)
..|+|..+.+. .|++.+.+++.+.... ...|+..++..++++.+++++ |.+ . .++++|+++++..++
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~ 119 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAV 119 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHH
Confidence 56889876654 4557777777664432 234766677888888887776 642 2 355555667777777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-----CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-----QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
..++ .+||.|++++|+|+... ..+...|.+++.++.+ .++.+|+++|++.++ .++++|++++|
T Consensus 120 ~~l~-~~Gd~Vlv~~P~y~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~--------~~~k~v~l~~P 187 (405)
T PRK06207 120 AATV-ARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK--------AGVRVFLFSNP 187 (405)
T ss_pred HHhc-CCCCEEEEeCCCchhHH---HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh--------hcCeEEEECCC
Confidence 7777 69999999999987644 3477888898888654 357789999999988 67888888555
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EEE-EeccccCCCcee--eEEecC
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SAS-VCLSKGLGAPVG--SVIVGS 220 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~~-~s~~K~~g~~~g--g~~~~~ 220 (359)
+||||.+++.+++++|+++|++||++||+||+|....+... ..+...+....+ +++ .|+||.|+.|+. ||++++
T Consensus 188 -~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~ 266 (405)
T PRK06207 188 -NNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS 266 (405)
T ss_pred -CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC
Confidence 67999999999999999999999999999999654322111 112222211222 444 499999986643 899999
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 221 KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
+++++.+.........+. +.+.+.++...++ .+.++.++++.++++.+.+.|++++++++. ++..++++|++++
T Consensus 267 ~~l~~~~~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~ 343 (405)
T PRK06207 267 PAIIDRMEKLQAIVSLRA--AGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLP 343 (405)
T ss_pred HHHHHHHHHHHhHhccCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCc
Confidence 999999887766655444 3334444444553 234446666777888899999888777764 3557899999987
Q ss_pred cchHHHHHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. ...+..++.+.|. ++||.+.|+. .+++||+++ .+++++++.+++|.+++++++
T Consensus 344 ~-~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 344 R-LAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred c-cCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 4 1235778999994 7899998763 468999996 478999999999999987764
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=253.54 Aligned_cols=331 Identities=17% Similarity=0.170 Sum_probs=239.4
Q ss_pred ccccccCCCC-CChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcC
Q 018243 4 RTVDLRSDTV-TKPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRG 78 (359)
Q Consensus 4 ~~id~~~~~~-~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g 78 (359)
++|+|..+.. .+|++.+.+++.+.... ...|....+..++++.+++++|.+. .++++|+++++..++..++ .+|
T Consensus 29 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~-~~g 107 (380)
T PRK06225 29 EMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL-SPG 107 (380)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc-CCC
Confidence 4688886644 45568999998876543 2346666678999999999998864 4677788888888888887 589
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
++|++++|+|.... ..+...|.+++.++.+. ++.+|++.+++.++ +++++++++++ +||||.+++
T Consensus 108 d~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~ 175 (380)
T PRK06225 108 DNAVTPDPGYLIID---NFASRFGAEVIEVPIYSEECNYKLTPELVKENMD--------ENTRLIYLIDP-LNPLGSSYT 175 (380)
T ss_pred CEEEEcCCCCcchH---HHHHHhCceEEeeccccccCCccCCHHHHHhhcC--------CCceEEEEeCC-CCCCCcCCC
Confidence 99999999976533 23667888888887532 46789999999888 67889988655 669999999
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHh
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKT 233 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~ 233 (359)
.+++++|+++|+++|+++|+|++|.. +.........+.....+++.|+||++|.++- ||+++++++++.++.....
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~~--~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~ 253 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYRD--FAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN 253 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHHH--HhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999998642 2111111122221223555599999985432 8899999998887655321
Q ss_pred hCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHH
Q 018243 234 LGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKK 310 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
. ...+...+.++...+ ..+.++..+...++.+.+.+.|++++++.+...+..++++|+.++. .+.+..++.+.
T Consensus 254 -~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~ 329 (380)
T PRK06225 254 -D--LGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISE-AGIDPEDLVEY 329 (380)
T ss_pred -c--cCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccc-ccCCHHHHHHH
Confidence 1 222333333443333 2334434455667778888999887676442234578889998864 23577899999
Q ss_pred HHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 311 LEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 311 l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
|.++||.+.++ +..++|++++ .+++++++++++|++++++++.
T Consensus 330 l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 330 LLERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHCCEEEcCCcccCcCCCCceEEEEeC--CCHHHHHHHHHHHHHHHHHhhc
Confidence 99999998775 2458999995 5799999999999999998764
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=255.38 Aligned_cols=278 Identities=47% Similarity=0.663 Sum_probs=233.1
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCC
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~ 86 (359)
||+||+ |+|++.++|.++..++..|+.++...++++.++++||.+..+++.+||+|+..++..++ ++++.|++..+
T Consensus 1 Df~SD~---~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~ 76 (290)
T PF01212_consen 1 DFRSDT---PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHL-RPGESVICADT 76 (290)
T ss_dssp EES-SS---S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHH-HTTEEEEEETT
T ss_pred CCCccC---CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHH-hcCCceecccc
Confidence 899999 89999999998888888999999999999999999999999999999999999999999 69999999999
Q ss_pred CcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 87 SHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
+|...++.+++..+.|.+++.++..++|.+|+++|++.++.... +..++++|+++++.+.-+|.+++.+++++|.++|
T Consensus 77 aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~--h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a 154 (290)
T PF01212_consen 77 AHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA--HHPQPAVVSLENTTELAGGTVYSLEELRAISELA 154 (290)
T ss_dssp EHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG--TSGGEEEEEEESSBTTTTSB---HHHHHHHHHHH
T ss_pred ceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc--cCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHH
Confidence 99999998877788999999998766699999999999986333 5578999999999986679999999999999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA 246 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (359)
++||+.+++|+++.+......+.+..++..++|++++|++|.+|.|.|++++++++++++....+...++.+...++.++
T Consensus 155 ~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a 234 (290)
T PF01212_consen 155 REHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAA 234 (290)
T ss_dssp HHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHH
T ss_pred HhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHhccCeeecceeee
Confidence 99999999999998777766778888888999999999999999999999999999988888888888888877766666
Q ss_pred ------HHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 247 ------AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 247 ------~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
.++.+++.+.. ...+..+++++|.+.|+.+ ++.+.. +..++.++
T Consensus 235 ~~~~~~~~l~~l~~~~~-~~~~~~~~A~~La~~l~~~-~~~~~~-~~~tn~~~ 284 (290)
T PF01212_consen 235 AELYQFAALRALELWLE-RARHANAMAKRLAAGLEAL-GGVLPR-PVETNQVF 284 (290)
T ss_dssp HHHHHHHHHCHEECSHH-HHHCHHHHHHCHHHCHHEE-CEEEET-TSS-HHHH
T ss_pred echhhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHC-CCcccC-CCCCcEEe
Confidence 45555555555 7778888999999999998 666533 34444433
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=253.37 Aligned_cols=338 Identities=16% Similarity=0.130 Sum_probs=241.5
Q ss_pred ccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC--------CeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE--------AGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~--------~~~~~~~gt~a~~~ 68 (359)
.+|+|..+.+. .+.+++.+++.++... ...|+...+..+++++++++++.. +.++++|+++++..
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 57889887663 3337788877765432 235777778899999999998542 23666667788888
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++..+. ++||+|++++|+|... . ..+...|++++.++. +.++.+|++.+++.++ ++++++++.+|
T Consensus 133 ~~~~l~-~~Gd~Vlv~~P~y~~y-~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~i~~P- 199 (430)
T PLN00145 133 IMSVLA-QPGANILLPRPGYPLY-E--ARAVFSGLEVRHFDLLPERGWEVDLEGVEALAD--------ENTVAMVIINP- 199 (430)
T ss_pred HHHHhc-CCCCEEEEcCCCCccH-H--HHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhC--------cCceEEEEeCC-
Confidence 888877 5999999999997664 3 236777888888764 3457899999999888 67888888676
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--eEEec--C
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG--S 220 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~--~ 220 (359)
+||||.+++.+++++|+++|+++|++||+||+|....+.. ...++..+.....++++ |+||.|++|+. ||++. +
T Consensus 200 ~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~ 279 (430)
T PLN00145 200 NNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDP 279 (430)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecc
Confidence 6799999999999999999999999999999975433211 11233333322345555 99999988766 88876 4
Q ss_pred HHHHHH---HHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 221 KEFIKK---ARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 221 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
+.+++. ...+......+...+.+.+.++...++ .+.++.+++++++++.+.+.|++++++.....|.+++++|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~ 359 (430)
T PLN00145 280 NGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVM 359 (430)
T ss_pred hhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEE
Confidence 444432 122333322222234455555555553 4455577778888999999999988887533467899999
Q ss_pred EEeccc--hH-HHHHHHHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 294 FEITED--SK-LYAACLLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 294 ~~~~~~--~~-~~~~~~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
++++.. .+ .+..+++.+| +++||.+.|+ ..+++||++. .+.+++++.+++|.+++.+..++
T Consensus 360 v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~~~ 428 (430)
T PLN00145 360 VKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCLRHAKL 428 (430)
T ss_pred eccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhccc
Confidence 998631 01 1455677666 7889999776 3568999995 58899999999999999887654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=249.26 Aligned_cols=322 Identities=19% Similarity=0.204 Sum_probs=235.4
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CC--C-C-eEEcCCc-hHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GK--E-A-GLFVPSG-TMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~--~-~-~~~~~~g-t~a~~~~l~~~ 73 (359)
+++||+++++..+ .+.+.+++.+.......|...++..++++.+++++ |. + . .+++++| ++++..++..+
T Consensus 1 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 1 RLFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred CeEeccCCCCCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 4689999887766 48888888875434445776677899999999987 53 2 2 4555555 45666666666
Q ss_pred hhhcC---CeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 74 CETRG---SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 74 ~~~~g---~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
+ ++| |+|+++.|+|..... .++..|++++.++.+. ++.+|++++++.++ ++++++++++ ++|
T Consensus 81 ~-~~g~~~d~Vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~~~i~i~~-p~N 147 (350)
T TIGR03537 81 I-DPEEDRRRVIFGTPGYPVYER---GALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL--------EETKIVWINY-PHN 147 (350)
T ss_pred c-CCCCCCceEEEcCCCCcchHH---HHHhcCCEEEEcccCcccCCccCHHHHHHhhh--------hccEEEEEeC-CCC
Confidence 6 466 699999999776443 3788999999997752 35689999999988 6789999865 577
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EEEE-eccccCCCcee--eEEecCHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SASV-CLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~~~-s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
|||.+++.+++++|.++|+++|++||+|++|..........+...+ +.+ ++++ |+||.+|.++. ||++.++++.
T Consensus 148 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~ 225 (350)
T TIGR03537 148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAGDEKLI 225 (350)
T ss_pred CcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhc--CcCCEEEEeecccccCCccccceeeecCHHHH
Confidence 9999999999999999999999999999996533222111122222 223 4444 99999986542 8899999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
+.++.....++.+. +.....++...+ ..+.++.++++.++.+.+.+.|++. |+++. ++.++.++|+.++.. .
T Consensus 226 ~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~--~ 299 (350)
T TIGR03537 226 SFLRKLRANFGVAS--PDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSG--I 299 (350)
T ss_pred HHHHHHHHhhccCC--CHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCC--C
Confidence 99887766655433 333334443444 2444546677788888999999988 88764 345677799998752 4
Q ss_pred HHHHHHHHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+..++.+.|.++||.+.++. ..++|+++. .+++++++++++|++
T Consensus 300 ~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 300 DAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 67899999988999997652 467999984 678999999988864
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=256.08 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=238.9
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC----CCeEEcCCc-hHHHHHHHHHhhhhc
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK----EAGLFVPSG-TMGNLISVLVHCETR 77 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~~~~~~~g-t~a~~~~l~~~~~~~ 77 (359)
..++|..+.+..+. |.+.+++.+.......|+...+..++++.++++++. +..+++++| ++++..++.+++ ++
T Consensus 86 ~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~-~p 164 (431)
T PRK15481 86 PLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL-LP 164 (431)
T ss_pred hhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC-CC
Confidence 35788888776655 677777776543444577777788999999999863 224555555 556666777666 59
Q ss_pred CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 78 g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
||.|++++|+|.... ..++..|++++.++.++++ +|++.+++.++ .+++++++.+.+|||||.+++.+
T Consensus 165 gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~--------~~~k~i~~~p~p~NPTG~~~s~~ 232 (431)
T PRK15481 165 GDSVAVEDPCFLSSI---NMLRYAGFSASPVSVDAEG-MQPEKLERALA--------QGARAVILTPRAHNPTGCSLSAR 232 (431)
T ss_pred CCEEEEeCCCcHHHH---HHHHHcCCeEEeeccCCCC-CCHHHHHHHHh--------cCCCEEEECCCCCCCCCccCCHH
Confidence 999999999976654 3478889999999876554 89999999997 57888888768888999999999
Q ss_pred hHHHHHHHHHHc-CcEEEEecccccchhhhcCchhHhhhcCccEEE-EeccccCCCcee--eEEecCHHHHHHHHHHHHh
Q 018243 158 YTDSVGEIAKKH-GLKLHIDGARIFNAAVALGVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGSKEFIKKARRLRKT 233 (359)
Q Consensus 158 ~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~ 233 (359)
++++|.++|+++ +++||+||+|...... ...+..... ...+++ .|+||.|+ |+. ||+++++++++.+......
T Consensus 233 ~~~~l~~la~~~~~~~ii~De~Y~~~~~~-~~~~~~~~~-~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~ 309 (431)
T PRK15481 233 RAAALRNLLARYPQVLVIIDDHFALLSSS-PYHSVIPQT-TQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNS 309 (431)
T ss_pred HHHHHHHHHHhcCCceEEecCchhhhccC-CCCCCCcCC-CCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhc
Confidence 999999999999 9999999996433211 111111111 123444 49999999 533 9999999999888655444
Q ss_pred hCCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 234 LGGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+. +.+.+.++...++ .++++.++.+.++++.+.+.|++. ++.+. .+.+++++|+.++. +..++.
T Consensus 310 ~~~~~--s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~-~p~gg~f~~~~l~~----~~~~~~ 381 (431)
T PRK15481 310 GTQWV--SHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIP-SPGDGLNLWLPLDT----DSQATA 381 (431)
T ss_pred cccCC--CHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-cCCCeEEEEEECCC----CHHHHH
Confidence 33333 4445555555553 234446777888999999999988 77653 35689999999975 456888
Q ss_pred HHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 309 ~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+.|.++||.+.|+. ..++||+++ ..+++++++++++|.+++.
T Consensus 382 ~~l~~~gV~v~pg~~f~~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 382 LTLAKSGWLVREGEAFGVSAPSHGLRITLS-TLNDAEINRLAADLHQALN 430 (431)
T ss_pred HHHHHCCcEEecCCccccCCCCCeEEEEcC-CCChHHHHHHHHHHHHHhc
Confidence 89989999997753 247999997 4679999999999998864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=248.43 Aligned_cols=328 Identities=17% Similarity=0.173 Sum_probs=233.0
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCC-CCCCccCCChHHHHHHHHHHHHhCC------C--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAE-VDDDVLMHDPTAFRLETEMAKVMGK------E--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~------~--~~~~~~~gt~a~~~~l~~ 72 (359)
+..+||..+.+..+. +.+.+++.+.. .....|+...+..++++.++++++. + ..++++|+++++..++.+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~ 108 (384)
T PRK06348 29 PDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQS 108 (384)
T ss_pred CCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHH
Confidence 356899988776544 66666544322 2344577777888999999998832 2 224555556676777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++|++|++++|+|..... .+...|.+++.++.. +++.+|++++++.++ +++++|++. .++|||
T Consensus 109 ~~-~~gd~vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~-~p~NPt 175 (384)
T PRK06348 109 IL-DPGDEVIIHEPYFTPYKD---QIEMVGGKPIILETYEEDGFQINVKKLEALIT--------SKTKAIILN-SPNNPT 175 (384)
T ss_pred hc-CCCCEEEEeCCCCcchHH---HHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC--------cCccEEEEe-CCCCCC
Confidence 76 599999999999776543 366778888888642 346689999999887 678899886 467799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-CccEEE-EeccccCCCcee--eEEecCHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSAS-VCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
|.+++.+++++|.++|+++|++||+||+|....+.....+...+.. ...+++ .|+||.+|.|+- ||+++++++.+.
T Consensus 176 G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~ 255 (384)
T PRK06348 176 GAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIET 255 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHH
Confidence 9999999999999999999999999999754332211122223321 123444 499999985543 999999999988
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+.........+. +.+.+.++...+ +.+.++.++.+.++++.+.+.|++++++.+. ++.++.++|+.++. .+.+
T Consensus 256 ~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~-~~~~ 331 (384)
T PRK06348 256 AKIINEGICFSA--PTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKK-TGLS 331 (384)
T ss_pred HHHHHHhccCCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEeccc-CCCC
Confidence 877665544443 333444444444 3445546667788889999999988777664 44567788999874 1246
Q ss_pred HHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..++.+.| +++||.+.|+. ..++|++++ .+++++++.+++|+++
T Consensus 332 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 332 SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence 77888887 57899997753 468999995 6889999999988754
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=249.64 Aligned_cols=324 Identities=16% Similarity=0.164 Sum_probs=233.8
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCCCccCC-ChHHHHHHHHHHHHhC------CC--CeEEcCCc-hHHHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMH-DPTAFRLETEMAKVMG------KE--AGLFVPSG-TMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~~la~~~~------~~--~~~~~~~g-t~a~~~~l~~ 72 (359)
..|||..+.+.. |.+.+.+++.+.......|++ .++..++++.++++++ .+ ..+++++| ++++..++.+
T Consensus 33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~ 112 (399)
T PRK07681 33 KMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMV 112 (399)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHH
Confidence 568999887753 457788888765433233443 3678899999999875 22 34555555 4566566666
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++||.|++++|+|... . ..+...|++++.++.+++ +.+|++++++.+. +++++|++++| +|||
T Consensus 113 ~~-~~Gd~Vlv~~P~y~~~-~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~v~l~~P-~NPT 179 (399)
T PRK07681 113 YA-NPGDIILVPDPGYTAY-E--TGIQMAGATSYYMPLKKENDFLPDLELIPEEIA--------DKAKMMILNFP-GNPV 179 (399)
T ss_pred hC-CCCCEEEECCCCccch-H--HHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc--------ccceEEEEeCC-CCCc
Confidence 66 6999999999997664 4 347788999999987643 5679999998887 67899998544 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EE-EEeccccCCCcee--eEEecCHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGSKEFIK 225 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~~~~~~ 225 (359)
|.+++.+++++|+++|++||++||+||+|....+... ..+...+....+ ++ ..|+||.||.|+- ||+++++++++
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~ 259 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVR 259 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHH
Confidence 9999999999999999999999999999753322111 112222221223 34 4499999986543 89999999999
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
.+.........+. +...+.++...++ .+.++.++.+.++++.+.+.|++. |+++. .+..++++|+.++.. .
T Consensus 260 ~~~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~~g~f~~~~l~~~--~ 333 (399)
T PRK07681 260 ALTQFKSNTDYGV--FLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-GWNVD-KPAGSMFVWAEIPKG--W 333 (399)
T ss_pred HHHHHHhhcccCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeeeEEEEECCCC--C
Confidence 9877665544444 3334444444553 344445666788889999999998 88763 345799999998752 4
Q ss_pred HHHHHHHHHHh-cCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEE-HGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 303 ~~~~~~~~l~~-~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+..++.+.|.+ +||.+.|+. .+++|+++. .+++++++++++|++
T Consensus 334 ~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 334 TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 67788888854 999997752 458999995 578999999999987
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=248.00 Aligned_cols=328 Identities=16% Similarity=0.094 Sum_probs=236.9
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC------CC--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG------KE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~------~~--~~~~~~~gt~a~~~~l~~ 72 (359)
+.+++|.++.+.. |++.+.+++.+.... ...|...++..++++.++++++ .+ ..++++|+++++..++..
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 111 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSL 111 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHH
Confidence 4578999988774 457888888775432 3457777788999999999974 22 235666667777777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ .+||.|++++|+|..... .+...|.+++.++.+. ++.+|++++++.++ ++++++++.+ ++|||
T Consensus 112 ~~-~~gd~vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~~~i~i~~-p~NPt 178 (387)
T PRK08960 112 LV-DPGKHWLLADPGYPCNRH---FLRLVEGAAQLVPVGPDSRYQLTPALVERHWN--------ADTVGALVAS-PANPT 178 (387)
T ss_pred hc-CCCCEEEEcCCCCcchHH---HHHhcCCeEEEEecCcccCCCCCHHHHHHHhC--------ccceEEEEEC-CCCCC
Confidence 76 699999999999877554 3666788888887654 35789999999888 6777888855 46699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKA 227 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~ 227 (359)
|.+++.+++++|+++|++||+++|+||+|....+.....+.... ..+++++ |+||.+|.++. ||+++++++++.+
T Consensus 179 G~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~ 256 (387)
T PRK08960 179 GTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEV--DDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPEL 256 (387)
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhc--cCCEEEEeecccccCCcccEEEEEEcCHHHHHHH
Confidence 99999999999999999999999999997432221111122222 3345555 99999986543 9999999999988
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
.........+.+ .+.+.++...+ ..++++.++.+.++++.+.+.|++. ++.+...+.+++++|++++.. ..+
T Consensus 257 ~~~~~~~~~~~s--~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~-~~~ 332 (387)
T PRK08960 257 EKLAQNLYISAS--TPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAF-GGD 332 (387)
T ss_pred HHHHhhhccCCC--HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEecccc-CCC
Confidence 777665554443 33333333334 2445546667788899999999987 766433356788999998741 135
Q ss_pred HHHHHHHH-HhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.++| .++||.+.|+ ...++|++++ .+.+++..++++|.++++
T Consensus 333 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 333 AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 67888887 6799999765 2358999996 367888888888877654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=254.28 Aligned_cols=337 Identities=17% Similarity=0.230 Sum_probs=249.6
Q ss_pred cccccccCCCCC-C-hHHHHHHHHHcCCCC-C-------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVT-K-PTEAMRAAMASAEVD-D-------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~-~-~~~~~~~a~~~~~~~-~-------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.+.++. . .+|++++++.++... . ..|+..+...++|++++++++.+..+++++|..++..++.+
T Consensus 109 ~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a 188 (481)
T PLN02822 109 KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPA 188 (481)
T ss_pred ceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHH
Confidence 357999987663 2 247777777664432 1 14667788999999999999998888888888888888888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCcc-CCce-eEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIV-YPTT-RLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~-~~v~i~~~~~~pt 150 (359)
+. ++||.|+++...|++... + ..+.+.+++.++++ |.+.++..+++...... .+++ ++|+++++++ ++
T Consensus 189 ~~-~~gd~Ii~d~~~H~s~~~-~--~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~-~~ 258 (481)
T PLN02822 189 FC-KKGDIIVADEGVHWGIQN-G--LYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQ-NS 258 (481)
T ss_pred hC-CCCCEEEEeCCccHHHHH-H--HHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCC-CC
Confidence 77 599999999999988765 3 66778888888876 67777776654211100 1234 6888877666 69
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~ 226 (359)
|.++| +++|+++|++||+++|+||+|++|.++..|....+.. ...|+++.|++|.+|+ .||++++++++++.
T Consensus 259 G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~-~GG~i~g~~~ii~~ 334 (481)
T PLN02822 259 GQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT-EGGFCTGSARVVDH 334 (481)
T ss_pred CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh-CCeEEEcCHHHHHH
Confidence 99998 7999999999999999999998877654444333321 2567888899999984 66889999999988
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc-----
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED----- 299 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~----- 299 (359)
++.....+..+.+.++..++++..+++... .+.+++++++.+++++.|++.+|+.+.. +..++++++.++..
T Consensus 335 ~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~~spi~~l~l~~~~~~~~ 413 (481)
T PLN02822 335 QRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGS-NTLSPIVFLHLEKSTGSAK 413 (481)
T ss_pred HHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCCCEEEEEeCCCccccc
Confidence 764433323333334566666666664322 2477789999999999999987887743 45788998888641
Q ss_pred -hHHHHHHHHHHHH-hcCceeccC---------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 300 -SKLYAACLLKKLE-EHGVLVMPE---------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 300 -~~~~~~~~~~~l~-~~gi~~~~~---------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.....+++++|. ++||.+.+. .+..+|++++..++++++++++++|+++++++.
T Consensus 414 ~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 414 EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1122468899984 899999754 134699999989999999999999999988764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=249.34 Aligned_cols=327 Identities=15% Similarity=0.104 Sum_probs=234.3
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----C--CC-C-eEEcCCch-HHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----G--KE-A-GLFVPSGT-MGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~--~~-~-~~~~~~gt-~a~~~~l~ 71 (359)
..|+|..+.+..+ ++.+.+++.+.... ...|+..++..++++++++++ | .+ . .+++++|+ +++..++.
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~ 110 (388)
T PRK07366 31 ELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPL 110 (388)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHH
Confidence 4688988766544 57888888765432 234666778899999999988 3 22 2 46666555 56666666
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ .+||.|++++|+|.... ..++..|.+++.++.+.+ +.+|++++++.+. ++++++++++ +|||
T Consensus 111 ~l~-~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~~-p~NP 177 (388)
T PRK07366 111 AVL-NPGDFALLLDPGYPSHA---GGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL--------AQARLMVLSY-PHNP 177 (388)
T ss_pred HhC-CCCCEEEEcCCCCcchH---HHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc--------ccceEEEEeC-CCCC
Confidence 666 59999999999976644 347788999999977533 5578888888776 5788999855 6679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc--CchhHhhhcCcc-EE-EEeccccCCCcee--eEEecCHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL--GVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGSKEF 223 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~--~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~~~~ 223 (359)
||.+++.+++++|+++|++||++||+||+|....+... ..+...+....+ ++ +.|+||.||.|+. ||+++++++
T Consensus 178 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~l 257 (388)
T PRK07366 178 TTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQL 257 (388)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHH
Confidence 99999999999999999999999999999644332110 112222222222 34 4599999986544 999999999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
++.+.........+.. .....++..++ +.++++.++.+.++++.+.+.|+++ ++.+. .+..++++|+.++...
T Consensus 258 i~~l~~~~~~~~~~~~--~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~f~~~~~~~~~ 333 (388)
T PRK07366 258 IQALRQVKAVVDFNQY--RGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-GWPVP-LPEATMYVWAKLPEPW 333 (388)
T ss_pred HHHHHHHHhhcccCCC--HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCccc
Confidence 9998877766554431 22222233333 3455656777888899999999988 77653 3568999999987521
Q ss_pred HHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+..++.+.| .++||.+.|+ +.+++||+++ .+++++++++++|.++
T Consensus 334 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 334 QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 12356787777 7889999775 2468999995 5789999999999865
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=249.46 Aligned_cols=330 Identities=18% Similarity=0.162 Sum_probs=238.8
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC----C----C-CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG----K----E-AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~----~----~-~~~~~~~gt~a~~~~l~~ 72 (359)
..|+|..+.+..+ .+.+.+++.+.... ...|...++..+++++++++++ . + ..++++|+++|+..++..
T Consensus 21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~ 100 (378)
T PRK07682 21 GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRA 100 (378)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHH
Confidence 4688888766543 35566666554322 2347667888999999999885 2 1 235555567788888877
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++||.|++++|+|.. +. ..++..|.+++.++.+ +++.+|++++++.++ +++++++++++ +|||
T Consensus 101 l~-~~gd~vl~~~p~y~~-~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~p-~NPt 167 (378)
T PRK07682 101 II-NPGDEVLIVEPSFVS-YA--PLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT--------AKTKAILLCSP-NNPT 167 (378)
T ss_pred hC-CCCCEEEEeCCCchh-hH--HHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC--------cccEEEEEECC-CCCc
Confidence 77 599999999999775 43 3466778888888654 357889999999987 67889988665 6799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc--CccEEEEeccccCCCcee--eEEecCHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
|.+++.+++++|.++|++|++++|+||+|....+.....+...+.. ...+++.|+||.||.|+. ||+++++++++.
T Consensus 168 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~ 247 (378)
T PRK07682 168 GAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEA 247 (378)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHH
Confidence 9999999999999999999999999999754433211122233321 122444599999986543 899999999999
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+.........+. +...+.++...++ ...+..++.+.++++.+.+.|+++ ++++. .+.++.++|+.++. .+.+
T Consensus 248 l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~~~~~~~~~~-~~~~ 322 (378)
T PRK07682 248 MLKIHQYSMMCA--PTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCH-VPGGAFYAFPSISS-TGLS 322 (378)
T ss_pred HHHHHHhhccCC--CHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCeeEEEEEeccC-CCCC
Confidence 876654333333 3444555555553 234446667888999999999998 88764 34567788887753 1246
Q ss_pred HHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..++.+.| .++||.+.|+ +..++||+++ .+++++++.+++|+++++++
T Consensus 323 ~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 323 SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 77888887 5889999775 2578999996 57899999999999988764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=247.01 Aligned_cols=333 Identities=20% Similarity=0.192 Sum_probs=237.5
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCC--CCCccCCChHHHHHHHHHH----HHhCC----CCeEEcC-CchHHHHHHH
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEV--DDDVLMHDPTAFRLETEMA----KVMGK----EAGLFVP-SGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la----~~~~~----~~~~~~~-~gt~a~~~~l 70 (359)
.+.++|..+.+. .|++.+.+++.+... ....|....+..++++.++ +.+|. +..++++ |+++++..++
T Consensus 27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~ 106 (389)
T PRK05957 27 PGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI 106 (389)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHH
Confidence 356888887765 455778888866432 2234655555555555554 44575 2335555 4556776777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
..++ .+||.|++++|+|..... ..+..|++++.++.+.++.+|++++++.++ +++++|++.+ ++|||
T Consensus 107 ~~~~-~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~klv~~~~-p~NPt 173 (389)
T PRK05957 107 LAIT-DPGDEIILNTPYYFNHEM---AITMAGCQPILVPTDDNYQLQPEAIEQAIT--------PKTRAIVTIS-PNNPT 173 (389)
T ss_pred HHhc-CCCCEEEEeCCCCcCHHH---HHHhcCCEEEEeecCCCCCcCHHHHHHhcC--------cCceEEEEeC-CCCCC
Confidence 7776 599999999999766433 356789999999887778899999999998 6889998865 56799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhhc-CccEE-EEeccccCCCcee--eEEecCHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQ-AADSA-SVCLSKGLGAPVG--SVIVGSKEFIK 225 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~-~~d~~-~~s~~K~~g~~~g--g~~~~~~~~~~ 225 (359)
|.+++.+++++|+++|+++|+++|+||+|....+.... .+...+.. ...++ +.|+||.+|.|+- ||++.++++++
T Consensus 174 G~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~ 253 (389)
T PRK05957 174 GVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLE 253 (389)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHH
Confidence 99999999999999999999999999996543322111 12222211 12244 4599999986553 89999999999
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCc-eEecCCccceEEEEEeccchH
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGL-RVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 301 (359)
++.........+.+ ...+.++...++ .+.++.++++.++++.+.+.|++++++ .+ .++.++.++|++++..
T Consensus 254 ~~~~~~~~~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~gg~~~~~~~~~~-- 328 (389)
T PRK05957 254 AIKKIQDTILICPP--VVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTL-HPANGAFYCFLKVNTD-- 328 (389)
T ss_pred HHHHHHhhcccCCC--cHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCeeEEEEEeCCCC--
Confidence 98877665544443 233444444443 234546667888899999999988664 44 3455678899998652
Q ss_pred HHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 302 ~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+..++.++| +++||.+.|+. .+++|++++ ..+++++++.+++|.+.++++-
T Consensus 329 ~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 329 LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG-ALQKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHHhhh
Confidence 5778899998 57999998863 358999996 4678999999999999888764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=247.71 Aligned_cols=328 Identities=18% Similarity=0.183 Sum_probs=239.5
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----C--CC--CeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----G--KE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~--~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|+|..+.+..| .+.+.+++.+.... ...|+..++..++++.+++++ | .+ ..++++|+++++..++..+
T Consensus 25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l 104 (382)
T PRK06108 25 GVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL 104 (382)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence 5688988876655 47888888775433 234777778889999999876 5 22 2356666777877887777
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
+ ++||.|++++|+|..... .++..|++++.++.+. ++.+|++++++.++ ++++++++++ ++|||
T Consensus 105 ~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~l~~-p~NPt 171 (382)
T PRK06108 105 V-GPGDEVVAVTPLWPNLVA---APKILGARVVCVPLDFGGGGWTLDLDRLLAAIT--------PRTRALFINS-PNNPT 171 (382)
T ss_pred c-CCCCEEEEeCCCccchHH---HHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC--------ccceEEEEEC-CCCCC
Confidence 7 599999999999766443 3677898999887653 35689999999887 6788998865 56799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC--chhHhhhc-Ccc-EEEEeccccCCCcee--eEEecCHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG--VPVRRLVQ-AAD-SASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~-~~d-~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
|.+++.+++++|.++|+++|+++|+|++|......... .+...+.. ... +++.|+||.||.++. ||++++++++
T Consensus 172 G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~ 251 (382)
T PRK06108 172 GWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALG 251 (382)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHH
Confidence 99999999999999999999999999997554332011 12222221 122 445599999986532 8999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.+.........+. +...+.++...++ .+.++.++++.++++.+.+.|++++++++.. +..+.++|+.++..
T Consensus 252 ~~~~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~-- 326 (382)
T PRK06108 252 QVLEKLIEYNTSCV--AQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGV-- 326 (382)
T ss_pred HHHHHHHHhcccCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCC--
Confidence 98876654333332 3444455555553 3344566778888899999999888887743 45678889988752
Q ss_pred HHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 302 ~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+..++.++| .++||.+.|+. ..++|++++. +++++++++++|+++++
T Consensus 327 ~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 327 TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 3567888888 67899997752 5689999974 89999999999988764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=248.48 Aligned_cols=339 Identities=14% Similarity=0.126 Sum_probs=237.4
Q ss_pred ccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC------C--CeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK------E--AGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~------~--~~~~~~~gt~a~~~ 68 (359)
.+|+|..+.+. .+.+++.+++.+.... ...|+..++..++++.++++++. + ..++++|+++++..
T Consensus 67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~ 146 (462)
T PLN02187 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146 (462)
T ss_pred CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHH
Confidence 46888887554 2235667766654332 23577778889999999999853 1 22455555677777
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++..++ ++||.|++++|+|.. +. ..+...|++++.++.. .++.+|++++++.++ ++++++++.+|
T Consensus 147 ~~~~l~-~pGd~Vlv~~P~y~~-y~--~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~--------~~~~~v~i~nP- 213 (462)
T PLN02187 147 VFESLA-RPNANILLPRPGFPH-YD--ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD--------ENTVAMVVINP- 213 (462)
T ss_pred HHHHhc-CCCCEEEEeCCCCcc-HH--HHHHHcCCEEEEEeCccccCCccCHHHHHHhcC--------CCcEEEEEeCC-
Confidence 777777 699999999999766 44 3477888899888653 468899999999887 67888888665
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--eEEec-CH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG-SK 221 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~-~~ 221 (359)
+||||.+++.+++++|+++|++||++||+||+|....+.. ...+...+.....++++ |+||.|+.|+. ||+++ ++
T Consensus 214 ~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p 293 (462)
T PLN02187 214 NNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDP 293 (462)
T ss_pred CCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCc
Confidence 5799999999999999999999999999999975433221 11233333222235555 99999987655 88886 33
Q ss_pred -H---HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 222 -E---FIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 222 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
. .++.+......+..+...+.+.+.++...++ .+.++.++.+.++++.+.+.|+++++......|.+++|+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~ 373 (462)
T PLN02187 294 EGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLL 373 (462)
T ss_pred hhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEE
Confidence 3 3345555555544433334445555555553 4455567778888999999999885543222356789999
Q ss_pred EEeccc--hHH-HHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 294 FEITED--SKL-YAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 294 ~~~~~~--~~~-~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
+.++.. .+. +..+++.++ .++||.+.|+. .+++||++. .+++.+++.+++|.+++++..++.
T Consensus 374 ~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~--~~~e~l~~al~rL~~~l~~~~~~~ 443 (462)
T PLN02187 374 TKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIG--VEAHMLEDALERLKGFCTRHAKKT 443 (462)
T ss_pred eecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhhhcc
Confidence 987531 111 344555555 89999998764 468999995 678999999999999998876543
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=248.23 Aligned_cols=330 Identities=17% Similarity=0.189 Sum_probs=241.7
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CC--C--CeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GK--E--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~--~--~~~~~~~gt~a~~~~l~~~ 73 (359)
+.|||..+.+..+ .+.+.+++.+.... ...|+..++..++++.+++++ |. + ..++++|+++++..++..+
T Consensus 34 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 113 (391)
T PRK08361 34 NVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESL 113 (391)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHh
Confidence 4688988876654 47777777664332 234766788899999999987 32 1 2356666777888888877
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++|+.|++++|+|.+... .+...|++++.++.+. ++.+|++++++.++ +++++++++++ +||||
T Consensus 114 ~-~~g~~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--------~~~~~v~i~~p-~NPtG 180 (391)
T PRK08361 114 L-EEGDEVIIPDPAFVCYVE---DAKIAEAKPIRIPLREENEFQPDPDELLELIT--------KRTRMIVINYP-NNPTG 180 (391)
T ss_pred c-CCCCEEEEcCCCCcccHH---HHHHcCCEEEEEecCCccCCCCCHHHHHHhcc--------cccEEEEEeCC-CCCCC
Confidence 7 599999999999877553 3677888999887654 45789999999998 67889988655 67999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~ 228 (359)
.++|.+++++|.++|+++++++|+||+|....... ...+...+....++++.|+||.||.++. ||+++++++++.+.
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~ 260 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMI 260 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHH
Confidence 99999999999999999999999999975433211 1122222222334556699999987642 89999999988877
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
........+. +...+.++...++ .+++..++++.++++.+.+.|++++++.+. ++.++.++|+.++. .+.+
T Consensus 261 ~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~-~~~~ 336 (391)
T PRK08361 261 KLHAYIIGNV--ASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDE-TGMS 336 (391)
T ss_pred HHHhhhccCC--ChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCC-CCCC
Confidence 6655443333 3344455444553 234556677788889999999998787764 34567789998874 2246
Q ss_pred HHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..++.+.| .++||.+.|+. ..++|++++ .+++++++.+++|++++++
T Consensus 337 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 337 SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 77888888 56899997752 468999996 5788999999999988764
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=247.44 Aligned_cols=334 Identities=18% Similarity=0.190 Sum_probs=254.8
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCC----C-CCccCCChHHHHHHHHHHHHhC----CC---CeEEcCCchH-HH
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEV----D-DDVLMHDPTAFRLETEMAKVMG----KE---AGLFVPSGTM-GN 66 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~----~-~~~~~~~~~~~~l~~~la~~~~----~~---~~~~~~~gt~-a~ 66 (359)
+..++|..+.+. +|...+.+++.+... . ...|+..++...+++.+++++. .. ..+++++|++ |+
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 567889887654 455666666655331 2 2356677899999999999885 21 2366666665 55
Q ss_pred HHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..++..++ ++||.|++.+|+|..... +.+..|++++.|+.+++| +|++.|++.+++ .+++++|+.+++
T Consensus 169 ~l~~~~l~-~pGd~v~vE~PtY~~~~~---~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~-------~~~k~~y~~P~~ 236 (459)
T COG1167 169 DLLLRLLL-DPGDTVLVEDPTYPGALQ---ALEALGARVIPVPVDEDG-IDPEALEEALAQ-------WKPKAVYVTPTF 236 (459)
T ss_pred HHHHHHhC-CCCCEEEEcCCCcHHHHH---HHHHcCCcEEecCCCCCC-CCHHHHHHHHhh-------cCCcEEEECCCC
Confidence 55555555 699999999999888764 488899999999988555 799999999996 589999999999
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh---HhhhcCccEEEE-eccccCCCcee-eEEecCH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV---RRLVQAADSASV-CLSKGLGAPVG-SVIVGSK 221 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~~~d~~~~-s~~K~~g~~~g-g~~~~~~ 221 (359)
+||||.++|.+..++|.++|++||++||+|+.| +.+.+.+.+. ..+...-.++++ ||||.+..... ||++.++
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y--~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~ 314 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLIIEDDYY--GELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPP 314 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcc--hhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCH
Confidence 999999999999999999999999999999984 4444444333 333222335555 99999986556 9999999
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHH---HHHHhHHHHhhhHHHHHHHHHHHHhcC-C-CceEecCCccceEEEEEe
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALV---ALQENVLVMLDGDHKKAKLLAEGLNQL-K-GLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~l~~~l~~~-~-g~~~~~~~~~~~~~~~~~ 296 (359)
++++.+...+.....+.+...+...+... .+..++...+..+.++++.+.+.|++. + .+.+ ..+.+|.++|+.+
T Consensus 315 ~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~-~~p~gG~flwl~l 393 (459)
T COG1167 315 ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATW-TRPEGGLFLWLEL 393 (459)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeee-ecCCceEEEEEEc
Confidence 99999988777766666443333333322 245666667778889999999999997 3 3444 4456799999999
Q ss_pred ccchHHHHHHHHHHHHhcCceecc-C--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEHGVLVMP-E--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~gi~~~~-~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+ ++..++.+.+.++|+.+.+ + ...++|++++ ..+++++++.++.|.+++++..
T Consensus 394 ~~~--~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s-~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 394 PEG--IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFS-SPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred CCC--CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 974 6888999999999999977 3 1347999998 6779999999999999988764
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=246.81 Aligned_cols=302 Identities=17% Similarity=0.127 Sum_probs=222.4
Q ss_pred CCccCCChHHHHHHHHHHHHhCC-C--CeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCcccee
Q 018243 31 DDVLMHDPTAFRLETEMAKVMGK-E--AGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRT 107 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~~-~--~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (359)
...|+...+..++++.++++++. + ..++++|+++++..++.+++ .+||+|+++.|+|.... ..++..|.+++.
T Consensus 55 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~---~~~~~~g~~v~~ 130 (373)
T PRK07324 55 KLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLY---DIPESLGAEVDY 130 (373)
T ss_pred CccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHH---HHHHHcCCEEEE
Confidence 34577777889999999999853 2 33566667788888888887 59999999999976654 347788989999
Q ss_pred eecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhh
Q 018243 108 VKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185 (359)
Q Consensus 108 v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~ 185 (359)
++.+. ++.+|++++++.++ +++++|++. .++||||.+++.+++++|+++|++||++||+|++|......
T Consensus 131 v~~~~~~~~~~d~~~l~~~~~--------~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~ 201 (373)
T PRK07324 131 WQLKEENGWLPDLDELRRLVR--------PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED 201 (373)
T ss_pred EecccccCCCCCHHHHHHhCC--------CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 87653 35679999999887 688999885 55679999999999999999999999999999996432221
Q ss_pred hcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHh
Q 018243 186 ALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVML 260 (359)
Q Consensus 186 ~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 260 (359)
....+..... ...+.+.|+||.+|.|+. ||+++++++++.++........+. +.....++..++ +...+..+
T Consensus 202 ~~~~s~~~~~-~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~--~~~~q~~a~~~l~~~~~~l~~~~ 278 (373)
T PRK07324 202 GSTPSIADLY-EKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICA--GVFDDMLASLALEHRDAILERNR 278 (373)
T ss_pred CCCCChhhcc-CCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecC--ChHHHHHHHHHHcCHHHHHHHHH
Confidence 1011122211 112444599999986543 889999999999887766443333 233334444444 34455456
Q ss_pred hhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCC
Q 018243 261 DGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQIS 335 (359)
Q Consensus 261 ~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~ 335 (359)
+.+.++++.+.+.|++.+++.+.. |.++.+.|+.++.+ .+..+++++| +++||.+.|+. .+++||+++ .+
T Consensus 279 ~~~~~~~~~l~~~l~~~~~~~~~~-p~gg~~~~i~~~~~--~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~--~~ 353 (373)
T PRK07324 279 KIVRTNLAILDEWVAKEPRVSYVK-PKAVSTSFVKLDVD--MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC--CD 353 (373)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEC-CCceEEEEEEeCCC--CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec--CC
Confidence 667788889999998887777643 45677778777642 3677888887 78899998874 468999995 57
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018243 336 ANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 336 ~~~i~~~~~~l~~~~~~~ 353 (359)
++.+++.+++|.++++++
T Consensus 354 ~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 354 TETLKKGLKKLSEFLREF 371 (373)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 899999999999988764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=245.48 Aligned_cols=323 Identities=16% Similarity=0.143 Sum_probs=232.8
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CC--C-C-eE-EcCCchHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GK--E-A-GL-FVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~--~-~-~~-~~~~gt~a~~~~l 70 (359)
...|+|+.+++..+. +.+.+++.+.... ...|++.++..++++++++++ |. + . .+ +++||++++..++
T Consensus 32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~ 111 (389)
T PRK08068 32 HDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELP 111 (389)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHH
Confidence 356899998877654 6778887764432 234766778899999999997 42 2 2 34 5555566777766
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ ++||.|++++|+|..... .++..|++++.++.+. ++.+|++++++.++ .++++|++++| ||
T Consensus 112 ~~~~-~~gd~vlv~~P~y~~~~~---~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P-~N 178 (389)
T PRK08068 112 QCLM-NPGDTILVPDPGYPDYLS---GVALARAQFETMPLIAENNFLPDYTKIPEEVA--------EKAKLMYLNYP-NN 178 (389)
T ss_pred HHhC-CCCCEEEEcCCCCcchHH---HHHhcCCEEEEeecccccCCCCCHHHHHHhcc--------ccceEEEEECC-CC
Confidence 7666 599999999999766443 3778899999998753 35679999999887 67889999655 67
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhcCc-c-EEEEeccccCCCcee--eEEecCH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQAA-D-SASVCLSKGLGAPVG--SVIVGSK 221 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~-d-~~~~s~~K~~g~~~g--g~~~~~~ 221 (359)
|||.+++.+++++|.++|++|+++||+||+|.... +.+. +........ . +++.|+||.||.|+- ||+++++
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~--~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 256 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIG--FDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE 256 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhc--cCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCH
Confidence 99999999999999999999999999999964322 2221 211211111 2 445599999986543 8999999
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEecc
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE 298 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 298 (359)
++++.+......+..+. ++..+.++...+ ..+.+..++++.++++.+.+.|+++ |+.+. ++.++.++|+.++.
T Consensus 257 ~l~~~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-~~~g~~~~~v~~~~ 332 (389)
T PRK08068 257 SVIEAINLLQDHLFVSL--FGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI-GWEVD-APKGSFFAWMPVPK 332 (389)
T ss_pred HHHHHHHHHHhhccCCC--ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCC
Confidence 99999887766554333 333333333333 2444556777888899999999998 87753 44567778999875
Q ss_pred chHHHHHHHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 299 DSKLYAACLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 299 ~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
. .+..++.++|. ++||.+.|+ +..++||+++ .+++.+...+++|++
T Consensus 333 ~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 385 (389)
T PRK08068 333 G--YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK 385 (389)
T ss_pred C--CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 2 46788999995 579999775 2468999995 567777777777764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=248.28 Aligned_cols=336 Identities=17% Similarity=0.155 Sum_probs=242.0
Q ss_pred cccccccCCCCCCh-------HHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-------TEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-------~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~ 71 (359)
++.+||+|.++.+- .+.+.+++.+.-.+ ...|+..+.+.++|+.+++++|.+.++++++|..++..++.
T Consensus 100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~ 179 (489)
T PLN02483 100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIP 179 (489)
T ss_pred ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence 45688888876522 26788887775332 22377788999999999999999999999999999998888
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCC----CccCCceeEEEEecccc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKG----EIVYPTTRLICLENTHA 147 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~v~i~~~~~ 147 (359)
+++ ++||.|++++++|.+... + ++..|++++.++.+ |.+++++.+++... ..+.+..+++++.....
T Consensus 180 al~-~~Gd~Vi~d~~~h~s~~~-~--~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~ 250 (489)
T PLN02483 180 ALI-GKGGLIISDSLNHNSIVN-G--ARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY 250 (489)
T ss_pred HhC-CCCCEEEEcchhhHHHHH-H--HHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence 887 599999999999999775 3 78889999999865 67777777653210 11112235444434444
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEF 223 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~ 223 (359)
+++|.+.+ +++|.++|++||+++|+||+|+.+..+..+....++. .+.|+++.|+||.||+ .|||+++++++
T Consensus 251 s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~GG~i~~~~~l 326 (489)
T PLN02483 251 SMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CGGYIAGSKEL 326 (489)
T ss_pred CCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-CceEEEcCHHH
Confidence 48898776 8999999999999999999998765543343333321 3567888899999986 67899999999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHHH--------hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQE--------NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
++.++............++.....+..+++. ...++++++.++++++++.|+++ |+.+.. +..++++++.
T Consensus 327 i~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~-~~~sp~~~l~ 404 (489)
T PLN02483 327 IQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLG-DNDSPVMPIM 404 (489)
T ss_pred HHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCCEEEEE
Confidence 9998765432211111222233333344421 12235677889999999999998 887643 3456777776
Q ss_pred eccchHHHHHHHHHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 296 ITEDSKLYAACLLKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+..+ .+..++.++|.++||.+++. ....+|++++..++++++++++++|+++++.+..
T Consensus 405 l~~~--~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~ 469 (489)
T PLN02483 405 LYNP--AKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGI 469 (489)
T ss_pred ECCH--HHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 6542 35668999998899998632 2367999999889999999999999999887653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=246.91 Aligned_cols=333 Identities=14% Similarity=0.122 Sum_probs=237.0
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHh----CCC----C-eEEcCCchH-HHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVM----GKE----A-GLFVPSGTM-GNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----~~~----~-~~~~~~gt~-a~~~~l 70 (359)
..|||..+.+..+ .+.+.+++.+... ....|.. ++...+++.+++++ |.+ . .+++++|++ ++..++
T Consensus 45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~ 123 (410)
T PRK06290 45 ELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLP 123 (410)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHH
Confidence 4689998876643 4777777765322 1233553 77899999999986 432 2 477777765 555555
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ ++||.|+++.|+|.. +. ..++..|++++.++.++ ++.+|++++++.+. .++++|++++| ||
T Consensus 124 ~~~~-~~gd~Vlv~~P~y~~-~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~nP-~N 190 (410)
T PRK06290 124 SCFI-NPGDVTLMTVPGYPV-TG--THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK--------EKAKLLYLNYP-NN 190 (410)
T ss_pred HHhC-CCCCEEEEeCCCCcc-HH--HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc--------ccceEEEEECC-CC
Confidence 5555 699999999999765 43 34778899999998764 35679999998887 67899999654 77
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc--CccEEEEeccccCCCcee--eEEecCHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
|||.+++.+++++|.++|++||++||+||+|....+.....+...+.. ...+++.|+||.+|.|+. ||++++++++
T Consensus 191 PTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~ 270 (410)
T PRK06290 191 PTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIV 270 (410)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHH
Confidence 999999999999999999999999999999754322111123323321 223555599999986553 9999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch--
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS-- 300 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-- 300 (359)
+.+.........+. +...+.++...++ .+.+..++++.++++.+.+.|++. |+.+. ++.++.++|+.++...
T Consensus 271 ~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~ 346 (410)
T PRK06290 271 KAFATVKDNNDSGQ--FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKS 346 (410)
T ss_pred HHHHHHHhccccCC--cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCcccc
Confidence 98877665554443 2233444444553 344546777888899999999998 88764 3446777888887521
Q ss_pred ---HHHHHHHHHHHHhcC-ceeccCCC--cEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 ---KLYAACLLKKLEEHG-VLVMPESS--TRVRIVVH-HQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 ---~~~~~~~~~~l~~~g-i~~~~~~~--~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
..+..++.++|.++| +.++|++. +++||++. ...++++.++++++|++.+.++.
T Consensus 347 ~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 347 GIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 025778999996654 55567543 48999973 33578999999999999987764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=245.67 Aligned_cols=325 Identities=17% Similarity=0.147 Sum_probs=231.2
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CCC----C-eEEcCCc-hHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GKE----A-GLFVPSG-TMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~----~-~~~~~~g-t~a~~~~l~ 71 (359)
...|+|..+.+..+ .+.+.+++.+.......|+...+..++++.+++++ |.+ . .+++++| ++++..++.
T Consensus 29 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~ 108 (396)
T PRK09147 29 LPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQ 108 (396)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHH
Confidence 35789988776644 57888888775444455777777889999999876 643 2 4555555 566666667
Q ss_pred Hhhhhc---CCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 72 VHCETR---GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 72 ~~~~~~---g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.++ ++ |+.|+++.|+|.. +. ..+...|.+++.++.+. ++.+|++.+++.+. +++++++++ .+
T Consensus 109 ~l~-~~~~~gd~vlv~~P~y~~-~~--~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~-nP 175 (396)
T PRK09147 109 TVI-DRDGPGPLVVCPNPFYQI-YE--GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW--------ARTQLLFVC-SP 175 (396)
T ss_pred HHc-CCCCCCCEEEEcCCCccc-hH--HHHHhcCCEEEEeccCccccCccCHHHHHHHHh--------hccEEEEEc-CC
Confidence 666 57 8899999999655 44 34778899999997753 36789999998887 678999985 56
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh------h-cCcc-EEE-EeccccCCCcee--e
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL------V-QAAD-SAS-VCLSKGLGAPVG--S 215 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~------~-~~~d-~~~-~s~~K~~g~~~g--g 215 (359)
+||||.+++.+++++|.++|++|+++||+||+|....+.........+ . ...+ +++ .|+||.++.|+. |
T Consensus 176 ~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG 255 (396)
T PRK09147 176 GNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG 255 (396)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceee
Confidence 779999999999999999999999999999996543221100111111 0 0112 444 499998876543 8
Q ss_pred EEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 216 VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
|+++++++++.+.......+.+. +...+.++...+ ..++.+.++.+.++++.+.+.|++. +.+ ..+..++++|
T Consensus 256 ~~~~~~~l~~~~~~~~~~~~~~~--~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~-~~p~~g~f~~ 330 (396)
T PRK09147 256 FVAGDAALLKKFLLYRTYHGCAM--PPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--LDV-QLPDAGFYLW 330 (396)
T ss_pred eecCCHHHHHHHHHHhhhcccCC--CHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--cCC-CCCCeeEEEE
Confidence 99999999998876665444433 333333433334 3445556677788888888888874 443 2356899999
Q ss_pred EEeccchHHHHHHHHHHH-HhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKL-EEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++++. +..++.+.| +++||.+.|+. .+++||+++ .+++++++++++|.++++
T Consensus 331 ~~~~~----~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 331 AKVPG----DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR 395 (396)
T ss_pred EECCC----CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 99873 456787887 67899997652 467999995 568899999999988763
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=245.76 Aligned_cols=326 Identities=16% Similarity=0.127 Sum_probs=230.3
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHH----hCCC-----CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKV----MGKE-----AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~----~~~~-----~~~~~~~gt~a~~~~l~~ 72 (359)
.+|+|..+.+..+ .+.+.+++.+... ....|++.++..++++.++++ +|.+ ..++++||++++..++.+
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~ 109 (384)
T PRK12414 30 DALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISA 109 (384)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHH
Confidence 4688988766544 5778887766432 234577767777888777765 4753 346777777888888888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ .+||+|++++|+|.. +. ..++..|.+++.++.+ +++.+|++.|++.++ +++++|+++ .++||||
T Consensus 110 l~-~~gd~Vlv~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~i~-~p~NPTG 176 (384)
T PRK12414 110 LV-HPGDEVIYFEPSFDS-YA--PIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT--------PRTRMIIVN-TPHNPSA 176 (384)
T ss_pred hc-CCCCEEEEeCCCccc-hH--HHHHHcCCEEEEEecCccccccCHHHHHhhcC--------cccEEEEEc-CCCCCCC
Confidence 87 599999999999765 43 3467778899888765 356789999999987 678999885 5577999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCc-c-EEEEeccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAA-D-SASVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~-d-~~~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|+++|++||+++|+|++|....+.. ...+...+.... . +++.|+||.||.|+. ||+++++++++.
T Consensus 177 ~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~ 256 (384)
T PRK12414 177 TVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDE 256 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHH
Confidence 99999999999999999999999999975432211 011122221112 2 444499999986543 999999999998
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+.........+. +...+.++...++ ....+.++.+.++++.+.+.|++. |+.+. ++.++.++|+.++.....+.
T Consensus 257 l~~~~~~~~~~~--s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~~~~~ 332 (384)
T PRK12414 257 IRKVHQFMVFSA--DTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFSDESD 332 (384)
T ss_pred HHHHHhheecCC--CcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccCCCCH
Confidence 887765544443 3334444444443 222235667888899999999998 87764 44567778887753111133
Q ss_pred HHHH-HHHHhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 305 ACLL-KKLEEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 305 ~~~~-~~l~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
.++. +.|.++||.+.|+. .+++||+++ .+++++++.+++|.+
T Consensus 333 ~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 333 SDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 4555 55688999997753 357999996 478999999988864
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=247.41 Aligned_cols=332 Identities=15% Similarity=0.182 Sum_probs=236.4
Q ss_pred cccccccCCCC-CCh-HHHHHHHHHcCCCC-CCcc-------CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTV-TKP-TEAMRAAMASAEVD-DDVL-------MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~-~~~-~~~~~~a~~~~~~~-~~~~-------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++++ ..+ +|++.+++.++... ...| +..+...++|+.+++++|.+..++++||++|+..++.+
T Consensus 38 ~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~ 117 (393)
T TIGR01822 38 REVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFET 117 (393)
T ss_pred ceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHH
Confidence 35699999986 333 47777777654432 1122 22455689999999999999889999999999988888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++||.|++++++|.+... + +.+.+.+.+.+.. +|++++++.+++... ...++++|++++++ ||||.
T Consensus 118 l~-~~gd~vi~~~~~~~s~~~-~--~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~--~~~~~~~v~~~~v~-~~tG~ 185 (393)
T TIGR01822 118 LL-GAEDAIISDALNHASIID-G--VRLCKAKRYRYAN-----NDMADLEAQLKEARA--AGARHRLIATDGVF-SMDGV 185 (393)
T ss_pred hC-CCCCEEEEeccccHHHHH-H--HHhcCCceEEeCC-----CCHHHHHHHHHhhhh--cCCCceEEEEeCCc-cCCCC
Confidence 87 699999999999988765 2 4555656554432 599999999884211 01278888886665 49999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+.+ +++|+++|++||+++|+|++|+++.....+....+. ..+.|+++.|+||+++++.+||+++++++.+.++.
T Consensus 186 ~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~ 262 (393)
T TIGR01822 186 IAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQ 262 (393)
T ss_pred cCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHH
Confidence 877 899999999999999999998776654333322222 22567888899999987677999999999988765
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+......++...+++..+++.. .++.++++.++++++.+.|++. |+++. +..++++.+.+.. ..+..++
T Consensus 263 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~~~~--~~~~~~l 337 (393)
T TIGR01822 263 RSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA-GFDIK--PADHPIIPVMLYD--AVLAQRF 337 (393)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEeCC--HHHHHHH
Confidence 43222111112333333444454322 2336677888999999999887 87763 2245566665543 2467889
Q ss_pred HHHHHhcCceecc-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMP-------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~~~gi~~~~-------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+.|.++||.+.. .+...+|++++..++++++++++++|+++++++.
T Consensus 338 ~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~ 391 (393)
T TIGR01822 338 ARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELG 391 (393)
T ss_pred HHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999888998842 2335699999999999999999999999877653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=245.62 Aligned_cols=333 Identities=15% Similarity=0.114 Sum_probs=237.0
Q ss_pred cccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC------------C-C-eEEcCC
Q 018243 3 TRTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK------------E-A-GLFVPS 61 (359)
Q Consensus 3 ~~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~------------~-~-~~~~~~ 61 (359)
..+|+|..+.+. .|.+.+.+++.+.... ...|+...+..++++.++++++. + . .++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G 112 (412)
T PTZ00433 33 KSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSG 112 (412)
T ss_pred CCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCC
Confidence 456899998775 4668888888775432 34577667889999999999863 1 1 245555
Q ss_pred chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 62 gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+++++..++..++ ++||+|+++.|+|.... ..++..|++++.++.+ .++.+|++++++.++ +++++
T Consensus 113 ~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~---~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--------~~~~~ 180 (412)
T PTZ00433 113 VSHAILMALTALC-DEGDNILVPAPGFPHYE---TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD--------DRTKA 180 (412)
T ss_pred hHHHHHHHHHHhc-CCCCEEEEccCCcccHH---HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc--------cCceE
Confidence 5677777777776 59999999999976644 3477889899888764 357889999999888 67889
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--e
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--S 215 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g 215 (359)
|++++ +|||||.+++.+++++|.++|+++|++||+||+|....+.. ...+...+....+++++ |+||.||.|+- |
T Consensus 181 i~~~~-p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG 259 (412)
T PTZ00433 181 LIMTN-PSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLG 259 (412)
T ss_pred EEEeC-CCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEE
Confidence 98855 46699999999999999999999999999999964322211 01122333222234544 99999976543 8
Q ss_pred EEec------CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC
Q 018243 216 VIVG------SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD 285 (359)
Q Consensus 216 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 285 (359)
|++. .+++++.++..... ..+. +.+.+.++...+ +.+.++.++++.++++.+.+.|++..++.+. .
T Consensus 260 ~~i~~~p~~~~~~~~~~~~~~~~~-~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~ 335 (412)
T PTZ00433 260 WLLLVDPHGNGGDFLDGMKRLGML-VCGP--CSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPT-M 335 (412)
T ss_pred EEEEeCCcccHHHHHHHHHHHhhc-cCCC--ChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-C
Confidence 8875 24566666554332 1222 344444444444 3455556677888899999999886577653 4
Q ss_pred CccceEEEEEeccch--H-HHHHHHHHHHH-hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 286 AVETNIVYFEITEDS--K-LYAACLLKKLE-EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~--~-~~~~~~~~~l~-~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+++++|+.++... + .+..++.+.|. ++||.+.++. .+++|++++ ..++++++.+++|.++++...
T Consensus 336 p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 336 PRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred CCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence 557889999986410 0 14578888885 6899998864 458999995 568899999999999887654
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=242.88 Aligned_cols=334 Identities=15% Similarity=0.210 Sum_probs=239.5
Q ss_pred ccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 6 VDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 6 id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
+||.+.++.+-. |+++++..++... ...|+....+.+||+++++++|.+.++++++|+.++..++.++.
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~- 79 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFA- 79 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhC-
Confidence 588888776444 7777776664422 22467778899999999999999999999999999999998887
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCC------ccCCceeEEEEeccccCC
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGE------IVYPTTRLICLENTHANC 149 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~v~i~~~~~~p 149 (359)
++||.|+++++.|.+.+. + +.+.+.+++.++++ |.+++++.++..... ...+++++|+++++.+ |
T Consensus 80 ~~GD~Vl~~~~~h~s~~~-~--~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~-~ 150 (392)
T PLN03227 80 KRGDLLVVDRGVNEALLV-G--VSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYK-N 150 (392)
T ss_pred CCCCEEEEeccccHHHHH-H--HHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcC-C
Confidence 699999999999999876 3 46666677777665 555555544321100 0114688999988765 9
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-----hcCccEEEEeccccCCCceeeEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-----VQAADSASVCLSKGLGAPVGSVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-----~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~ 224 (359)
+|.+.| +++++++|++||+++|+||+|+++..+..|....+. ..++|+++.|++|.+| +.||+++++++++
T Consensus 151 ~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~ 226 (392)
T PLN03227 151 TGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVV 226 (392)
T ss_pred CCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHH
Confidence 999988 789999999999999999999876655444333332 1256999999999887 6888888998888
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEe---------cCCccceEEE
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVD---------VDAVETNIVY 293 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~---------~~~~~~~~~~ 293 (359)
+.++........+.+.++..++++..++.... ++.+++..++.+++++.|++. ++... .....++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~ 305 (392)
T PLN03227 227 DHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIY 305 (392)
T ss_pred HHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEE
Confidence 77654322222222224556666665664322 247778889999999999863 33211 1123577888
Q ss_pred EEeccchH-------HHHHHHHHHHHhcCceeccC-----------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSK-------LYAACLLKKLEEHGVLVMPE-----------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 294 ~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~-----------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+.+... ....++.+.|.++|+.+.+. .+..+|++++..+|++|+++++++|+++++++.
T Consensus 306 i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 306 LRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred EEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88855210 01358888999999988431 245689999999999999999999999998764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=243.66 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=232.7
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC----C--C--CeEEcCC-chHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG----K--E--AGLFVPS-GTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~----~--~--~~~~~~~-gt~a~~~~l 70 (359)
...+||..+.+..+ .+.+.+++.+.... ...|+...+..++++.++++++ . + ..+++++ +++++..++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~ 108 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIP 108 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHH
Confidence 35689998877644 47777777764322 2346666678899999999874 3 1 2355554 556666777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ ++||.|++++|+|..... .+...|.+++.++.+. ++.+|++++++.+. +++++|++++| +|
T Consensus 109 ~~~~-~~gd~vlv~~P~y~~~~~---~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~--------~~~~~v~i~~P-~N 175 (383)
T TIGR03540 109 LAFV-NPGDIVLVPDPGYPVYRI---GTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA--------KKAKLMFINYP-NN 175 (383)
T ss_pred HHhC-CCCCEEEEeCCCCcchHH---HHHhcCCEEEEEecCcccCCccCHHHHHhhcc--------ccceEEEEeCC-CC
Confidence 6666 699999999999766443 3778899999997753 35579999998887 67899999655 67
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCcc--EEEEeccccCCCcee--eEEecCHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAAD--SASVCLSKGLGAPVG--SVIVGSKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d--~~~~s~~K~~g~~~g--g~~~~~~~~ 223 (359)
|||.+++.+++++|+++|++||++||+||+|....+.. ...+...+....+ ++..|+||.||.|+. ||+++++++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l 255 (383)
T TIGR03540 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADL 255 (383)
T ss_pred CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHH
Confidence 99999999999999999999999999999975432211 1122222221112 444599999986543 899999999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
++.+.........+.+ ...+.++...+ ..+.++.++.+.++++.+.+.|++. ++.+. ++..+.++|+.++..
T Consensus 256 ~~~~~~~~~~~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~~~~~~l~~~- 330 (383)
T TIGR03540 256 IAGLGKVKTNVDSGVF--QAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-GIDVE-KPKATFYVWVPVPEG- 330 (383)
T ss_pred HHHHHHHHHhcccCCC--hHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEec-CCCcceEEEEECCCC-
Confidence 9988776655444442 23344444444 3445556667888899999999998 88774 344677899998752
Q ss_pred HHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
.+..++.++| .++||.+.++ +.+++|++++ .+++++++.+++|.+
T Consensus 331 -~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 331 -YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--VPDERLEEAVARIKK 382 (383)
T ss_pred -CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--CCHHHHHHHHHHHhh
Confidence 5678899887 6899999775 2468999995 677888888777753
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=249.74 Aligned_cols=330 Identities=14% Similarity=0.122 Sum_probs=227.0
Q ss_pred ccccccCCCC---CC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh------CCC-CeEEcCCc-hHHHHHHHH
Q 018243 4 RTVDLRSDTV---TK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM------GKE-AGLFVPSG-TMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~---~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~-~~~~~~~g-t~a~~~~l~ 71 (359)
.+|+|+.+++ .. +++.+.+++.+.......|+...+..++++++++++ +.+ ..+++++| ++++..++.
T Consensus 147 ~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~ 226 (517)
T PRK13355 147 HILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMS 226 (517)
T ss_pred CeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHH
Confidence 5688998766 23 346777777665444456888888999999999998 332 23655555 556667777
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ ++||+|++++|+|.. +. ..+...|.+++.++.+ .++.+|++++++.++ +++++|++++| |||
T Consensus 227 ~l~-~~Gd~Vli~~P~y~~-y~--~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~--------~~~k~i~i~nP-~NP 293 (517)
T PRK13355 227 ALL-DDGDEVLIPSPDYPL-WT--ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT--------SRTKAIVIINP-NNP 293 (517)
T ss_pred HhC-CCCCEEEEcCCCCcC-HH--HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC--------cCceEEEEECC-CCC
Confidence 776 699999999999765 44 3477888899888654 347899999999988 78999998665 679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--eEEe--cCHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIV--GSKEF 223 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~--~~~~~ 223 (359)
||.+++.+++++|+++|++||++||+||+|....+.. ...+...+.....++++ |+||.++.++. ||++ +++++
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~ 373 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRI 373 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhh
Confidence 9999999999999999999999999999964322211 11233333222224444 99999987654 8887 44544
Q ss_pred H----HHHHHHHHhhCCCcchhHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 224 I----KKARRLRKTLGGGMRQVGVLCAAALVALQ------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 224 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
. +.+.... ....+. +...+.++..++. ..... ..+..++++++.+.|+++||+++. ++.++.++|
T Consensus 374 ~~~~~~~l~~~~-~~~~~~--~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~ 448 (517)
T PRK13355 374 AKDYIEGLNMLA-NMRLCS--NVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAV-KPKAAFYIF 448 (517)
T ss_pred HHHHHHHHHHHh-cCcCCc--ChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEE
Confidence 3 3332221 111222 3334444444442 23331 234456678999999998898874 455777788
Q ss_pred EEeccch--HHHHHHHH-HHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDS--KLYAACLL-KKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 294 ~~~~~~~--~~~~~~~~-~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++++... ..+..+++ +.|.++||.+.|+. .+++|+++ ..+++++++.+++|.++++.+
T Consensus 449 ~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 449 PKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred eecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 8876310 01233444 45689999997763 56899999 578999999999999998765
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=241.37 Aligned_cols=323 Identities=17% Similarity=0.160 Sum_probs=250.1
Q ss_pred cccccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+.++|.|++|.+-. |+++++..++... ...++..+.+.++|+++++++|.+.++++++|..|+..++.+
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~a 181 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVA 181 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHH
Confidence 467999999887554 7777777664322 123556778899999999999999999999999999999988
Q ss_pred hh-------------hhcCCeEEecCCCcceeeccccccccC----CccceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 73 HC-------------ETRGSEVILGDNSHIHIYENGGISTIG----GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 73 ~~-------------~~~g~~vl~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
+. ..+++.|+.+...|.+.+. + +++. +++++.++++ |++.|++.+++.. .
T Consensus 182 L~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~d-G--~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~-----~ 248 (476)
T PLN02955 182 IGSVASLLAASGKPLKNEKVAIFSDALNHASIID-G--VRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCK-----M 248 (476)
T ss_pred HhhccccccccccccCCCCcEEEEeccchHHHHH-H--HHhccccCCceEEEeCCC-----CHHHHHHHHHhCC-----C
Confidence 73 2356678999999999887 4 4443 5677778887 9999999997532 3
Q ss_pred ceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCc
Q 018243 136 TTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAP 212 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~ 212 (359)
+.++|++++..+ +.|.+.| +++|.++|++||+++|+||+|++|..+..|....+. ....|+++.|++|.+|.
T Consensus 249 ~~~~Vv~EgV~S-mdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~- 323 (476)
T PLN02955 249 KRKVVVTDSLFS-MDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC- 323 (476)
T ss_pred CceEEEEeCCCC-CCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc-
Confidence 457888888887 7899888 899999999999999999999988887665554433 23567888899999985
Q ss_pred eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccce
Q 018243 213 VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN 290 (359)
Q Consensus 213 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~ 290 (359)
.||++++++++++.++.....+..++..++..++++..+++... ..+++++.++.+++++. . |+.+ .++
T Consensus 324 ~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---~-G~~~-----~sP 394 (476)
T PLN02955 324 HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---S-GVDI-----SSP 394 (476)
T ss_pred cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---c-CCCC-----CCC
Confidence 78889999999998887766655555556666666677665332 23556677777777763 2 5543 477
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCcee-------ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITEDSKLYAACLLKKLEEHGVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~-------~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.+.+..+ ..+..+.++|.++||.+ +|.+...+||+++..++++|+++++++|.++.....
T Consensus 395 I~pI~ig~~--~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 395 IISLVVGNQ--EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred EEEEEeCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 888887763 47778999999999998 445667899999999999999999999998876553
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=241.96 Aligned_cols=335 Identities=16% Similarity=0.127 Sum_probs=237.3
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCC--------C-CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGK--------E-AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--------~-~~~~~~~gt~a~~~~l~ 71 (359)
..+|+|..+.+..+ .+.+.+++.+.... ...|+...+..++++.++++++. + ..++++|+++++..++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 109 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLT 109 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 45789988776644 36677777654332 23476667788999999998742 1 23556666788888888
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
.++ .+||.|++++|+|.... ..++..|.+++.++.+. ++.+|++.+++.+++.. ++++++++++| +|||
T Consensus 110 ~~~-~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~~~i~l~~P-~NPt 179 (391)
T PRK07309 110 AIL-EPGDKVLLPAPAYPGYE---PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG-----DKLKAVILNYP-ANPT 179 (391)
T ss_pred Hhc-CCCCEEEEeCCCCcchH---HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC-----CCeEEEEEECC-CCCC
Confidence 777 59999999999977743 34778899999887654 35789999999987421 36889999655 6799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKA 227 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~ 227 (359)
|.+++.+++++|+++|++||+++|+|++|....+.. ...+...+....-+++.|+||.||.|+. ||+++++++++.+
T Consensus 180 G~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~ 259 (391)
T PRK07309 180 GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQL 259 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHH
Confidence 999999999999999999999999999975433211 1122233321112444599999986543 8999999999988
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHHHh---HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQEN---VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.........+. +.+.+.++...+++. ....++.+.++++++.+.|++. ++.+. ++..+.++|+.++.....+.
T Consensus 260 ~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg~~~~~~l~~~~~~~~ 335 (391)
T PRK07309 260 IKSHQYLVTAA--TTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-GFKII-KPDGAFYIFAKIPAGYNQDS 335 (391)
T ss_pred HHHHhhcccCC--ChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEECCCCCCCCH
Confidence 76544332222 334444444455432 2224556778888999999988 88764 34567788988764211245
Q ss_pred HHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 305 ~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+.| .++||.+.|+. ..++|++++ .+.+++++++++|++++++.
T Consensus 336 ~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 336 FKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred HHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 6788765 78999997763 468999996 46889999999999988765
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=242.65 Aligned_cols=330 Identities=22% Similarity=0.223 Sum_probs=243.2
Q ss_pred ccccccCCCCCCh-----HHHHHHHHHc---CCCCCCccCCChHHHHHHHHHHHHhC--------CCCeEEcCCchHHHH
Q 018243 4 RTVDLRSDTVTKP-----TEAMRAAMAS---AEVDDDVLMHDPTAFRLETEMAKVMG--------KEAGLFVPSGTMGNL 67 (359)
Q Consensus 4 ~~id~~~~~~~~~-----~~~~~~a~~~---~~~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~ 67 (359)
.+|||.++.+... .+++.+++.+ .......|+...+..++++.++++++ .+..+++++|+.++.
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5799999988764 3666666654 22235568888899999999999998 233689999998888
Q ss_pred HHHHHhh-hhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEec
Q 018243 68 ISVLVHC-ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 68 ~~l~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~ 144 (359)
..+..++ .++++.|++++|+|..... .++..|.+++.++. ..++.+|+++|++.+++...+. .++++|++++
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~--~~~~~v~~~~ 156 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIE---AARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG--PRPKAVLICN 156 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHH---HHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT--ETEEEEEEES
T ss_pred hhhhhcccccccccceecCCccccccc---cccccCceeeeccccccccccccccccccccccccccc--cccceeeecc
Confidence 8877777 5689999999999887654 47788989888874 3678889999999999532111 1578888855
Q ss_pred cccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc-h-hHhhhcCccEEE-EeccccCCCcee--eEEec
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV-P-VRRLVQAADSAS-VCLSKGLGAPVG--SVIVG 219 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~-~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~ 219 (359)
+ +||||..++.+++++|+++|++||++||+||+|........+. + ...+....++++ .|+||.||.|+. ||+++
T Consensus 157 p-~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~ 235 (363)
T PF00155_consen 157 P-NNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVA 235 (363)
T ss_dssp S-BTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEE
T ss_pred c-ccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccc
Confidence 5 5699999999999999999999999999999976654432211 1 222223444444 499999987542 88888
Q ss_pred CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEe
Q 018243 220 SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
++++++.++.....+..+.. ........+... .++.++.++++.++++++.+.|++. ++.+..++ .+.++|+.+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~ 312 (363)
T PF00155_consen 236 PPELIERLRRFQRSGLSSSP-MQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRL 312 (363)
T ss_dssp EHHHHHHHHHHHHHTTSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEE
T ss_pred hhhhhhhhhhccccccccch-hhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEc
Confidence 99999998887776555221 111111111111 1255667888889999999999999 99986543 788888888
Q ss_pred ccchHHHHHHHHHHHHhc-CceeccC----CCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEH-GVLVMPE----SSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+.. +..++.++|.++ ||.+.|+ ..+++|+++ ...+++++++++++|
T Consensus 313 ~~~---~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 313 DPN---DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp SHH---HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred ccc---hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 762 788999999665 9999764 366899999 479999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=238.53 Aligned_cols=328 Identities=21% Similarity=0.261 Sum_probs=243.9
Q ss_pred ccccccCCCCCChHHHHHHHHHcCC----CC--CCccCC----ChHHHHHHHHHHHHhCCCC--e-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAE----VD--DDVLMH----DPTAFRLETEMAKVMGKEA--G-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~----~~--~~~~~~----~~~~~~l~~~la~~~~~~~--~-~~~~~gt~a~~~~l 70 (359)
+.++|.+...+..+..+.+++.+.. .+ ...+.. ....++.|+.+++++|.+. . +++.|.|+++..+.
T Consensus 22 ~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va 101 (405)
T COG0520 22 PLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVA 101 (405)
T ss_pred CeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHH
Confidence 4567777666655566666666522 11 112222 3356889999999999873 3 66667777888877
Q ss_pred HHhh--hhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 71 LVHC--ETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 71 ~~~~--~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.++. .++||+|++++..|.+..... ..++..|++++.++.++++.++.+.++..++ ++|++|.+++..|
T Consensus 102 ~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~--------~~Tklvais~vSn 173 (405)
T COG0520 102 RGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT--------PKTKLVALSHVSN 173 (405)
T ss_pred HHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC--------CCceEEEEECccc
Confidence 7774 368999999999998875311 2244568999999988999999999999888 8999999977666
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~ 226 (359)
.||.+.| +++|.++|+++|+++++|.+|+.+.. ......+ ++|++.+|.|||+++|.| |++++++++.+.
T Consensus 174 -~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~---~idv~~l--~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~ 244 (405)
T COG0520 174 -VTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL---PIDVQEL--GCDFLAFSGHKWLLGPTGIGVLYVRKELLEE 244 (405)
T ss_pred -cccccch---HHHHHHHHHHcCCEEEEECccccCcc---CCCchhc--CCCEEEEcccccccCCCceEEEEEchHHHhh
Confidence 8999988 89999999999999999999866544 3344444 899999999999988988 999999999988
Q ss_pred HHHHHH----------------------hhCCCcchhHHHH-HHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 227 ARRLRK----------------------TLGGGMRQVGVLC-AAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 227 ~~~~~~----------------------~~~~~~~~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
+..... .-.++......+. .+++..+ +...+.+.++.+++.+++.+.|+++|++++
T Consensus 245 l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i 324 (405)
T COG0520 245 LEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEI 324 (405)
T ss_pred cCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 622111 0111111111121 1222222 233344566677889999999999999998
Q ss_pred ecCCc--cceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcE------------EEEEeCCCCCHHHHHHHHHHHHH
Q 018243 283 DVDAV--ETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTR------------VRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 283 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~------------lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
..++. .+.++.|.+.. ....++...|.++||.++.+..+. +|+|++.++|++|||++++.|++
T Consensus 325 ~g~~~~~r~~~vsF~v~~---~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~ 401 (405)
T COG0520 325 YGPPDADRGGIVSFNVKG---IHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKK 401 (405)
T ss_pred ecCCcccCceEEEEEeCC---CCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 76653 68888899887 488999999999998886664432 99999999999999999999998
Q ss_pred HHH
Q 018243 349 IYA 351 (359)
Q Consensus 349 ~~~ 351 (359)
+.+
T Consensus 402 ~~~ 404 (405)
T COG0520 402 ALA 404 (405)
T ss_pred Hhh
Confidence 764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=243.86 Aligned_cols=320 Identities=16% Similarity=0.161 Sum_probs=233.5
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~~ 80 (359)
..|+|..+.+. +|++.+++++.+.......| +..+..++++.++++++.+. .+++++|+ +++..++.+++ ++||.
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd~ 107 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDHALY-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL-KAGDN 107 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcC-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCCCE
Confidence 45888887655 45688998887754333344 45677899999999998865 35555555 55566666666 69999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|..... .+...|.+++.++.+ ++.+|++++++.++ ++++++++++ +|||||.+++.++++
T Consensus 108 vlv~~P~y~~~~~---~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~--------~~~~~v~i~~-P~NPTG~~~~~~~l~ 174 (366)
T PRK01533 108 IVTAGATFPQYRH---HAIIEGCEVKEVALN-NGVYDLDEISSVVD--------NDTKIVWICN-PNNPTGTYVNDRKLT 174 (366)
T ss_pred EEEcCCcHHHHHH---HHHHcCCEEEEeecC-CCCcCHHHHHHHhC--------cCCcEEEEeC-CCCCCCCCcCHHHHH
Confidence 9999999765443 477889999999875 55689999999887 6788999865 567999999999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-CccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
+|+++|++++ ++|+||+|..........+...... ...++++ |+||.||+|+. ||+++++++++.++.....
T Consensus 175 ~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~~--- 250 (366)
T PRK01533 175 QFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLP--- 250 (366)
T ss_pred HHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcCC---
Confidence 9999998876 5777999742211101112222221 2235544 99999997554 8999999999988765422
Q ss_pred CcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
+..+.+.+.++..+++ .+.++.++...++++++.+.++.+ |+++. ++.++|+|+.++. ..++.+.|.++
T Consensus 251 -~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~--~~~~nf~~~~~~~-----~~~~~~~l~~~ 321 (366)
T PRK01533 251 -FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIPFY--QSQTNFIFLPVEN-----GGEIYEACAHA 321 (366)
T ss_pred -CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccC--CCcCcEEEEeCCC-----HHHHHHHHHHC
Confidence 2335556666666663 344445566677788888888888 87764 3489999998853 45789999999
Q ss_pred CceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 315 GVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 315 gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
||.+.+. ..++||++ -+.++.+.++++|+++++..+.
T Consensus 322 GI~Vr~~-~~~iRis~---~~~~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 322 GFIIRPF-PNGVRITV---GTREQNEGVISVLQQHFENKKR 358 (366)
T ss_pred CcEEccC-CCceEEeC---CCHHHHHHHHHHHHHHHHhccc
Confidence 9999886 57899998 5789999999999998876543
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=243.28 Aligned_cols=331 Identities=15% Similarity=0.149 Sum_probs=237.0
Q ss_pred ccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC--------CCeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK--------EAGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~ 68 (359)
.+|+|..+.+. .|++.+.+++.+.... ...|+...+..++++.++++++. +..++++|+++++..
T Consensus 32 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~ 111 (409)
T PLN02656 32 RVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDV 111 (409)
T ss_pred eeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHH
Confidence 56888888775 4457888887765443 23577778889999999999853 123566667778777
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++.+++ ++||+|++++|+|.. +. ......|++++.++.. +++.+|++.+++.++ ++++++++.++
T Consensus 112 ~~~~l~-~~gd~Vlv~~p~y~~-~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P- 178 (409)
T PLN02656 112 ALSMLA-RPGANILLPRPGFPI-YE--LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD--------QNTVALVIINP- 178 (409)
T ss_pred HHHHHh-CCCCeEEEeCCCCCc-HH--HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc--------cCceEEEEECC-
Confidence 887777 599999999999764 43 2366778899888764 346789999999887 67888888665
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhcCccEEEE-eccccCCCcee--eEEec-
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQAADSASV-CLSKGLGAPVG--SVIVG- 219 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~- 219 (359)
+||||.+++.+++++|+++|+++|++||+|++|....+ .+. +...+.....++++ |+||.|+.|+. ||+++
T Consensus 179 ~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~ 256 (409)
T PLN02656 179 GNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAF--GSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTT 256 (409)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc--CCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEe
Confidence 67999999999999999999999999999999643222 221 22222222235555 99999887655 88887
Q ss_pred -------CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc
Q 018243 220 -------SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288 (359)
Q Consensus 220 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~ 288 (359)
++++++.+........ +. +.+.+.++...++ .+.++.++++.++++.+.+.|++++++.....+.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~-~~--s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~g 333 (409)
T PLN02656 257 DPSGSFRDPKIVERIKKYFDILG-GP--ATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEG 333 (409)
T ss_pred CcccccccHHHHHHHHHHHhhhc-CC--CHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCe
Confidence 3578887765544322 12 3344445544453 34555667788889999999998755543234568
Q ss_pred ceEEEEEeccc--hH-HHHHHH-HHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITED--SK-LYAACL-LKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 289 ~~~~~~~~~~~--~~-~~~~~~-~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.++|++++.. .. .+..++ .+.|.++||.+.|+. .+++||+++ .+++++++.+++|++++.+..
T Consensus 334 g~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 334 SMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred EEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence 89999998631 00 123344 456689999998874 458999996 589999999999999887654
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=242.07 Aligned_cols=333 Identities=19% Similarity=0.199 Sum_probs=242.0
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhC----C--C--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMG----K--E--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~----~--~--~~~~~~~gt~a~~~~l~~ 72 (359)
.+.+||..+.+..+. +.+.+++.+... ....|+...+...+++.++++++ . + ..++++|+++++..++..
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~ 110 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMA 110 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHH
Confidence 456899998877664 788888776443 23347777788999999999883 2 1 135566667788888887
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++|+.|++++|+|..... .++..|.+++.++.+. ++.+|++.+++.++ +++++|+++++ +|||
T Consensus 111 ~~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p-~NPt 177 (393)
T PRK05764 111 LL-DPGDEVIIPAPYWVSYPE---MVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT--------PKTKALILNSP-SNPT 177 (393)
T ss_pred hc-CCCCEEEecCCCCcchHH---HHHHcCCEEEEEecCcccCCcCCHHHHHHhhC--------ccceEEEEECC-CCCC
Confidence 77 599999999999876443 3677899999987753 46789999999997 67889888655 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc---CccEEEEeccccCCCcee--eEEecCHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ---AADSASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~---~~d~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
|.+++.+++++|+++|++||+++|+|++|....+.. ...+...+.. ..+++..|+||.+|.++. ||++++++++
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~ 257 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELI 257 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHH
Confidence 999999999999999999999999999975432211 1112333311 233555599999986542 8899999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch-
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS- 300 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~- 300 (359)
+.+.........+. +...+.++...++ ...++.++.+.++++.+.+.|++++++.+.. +..+.++|+.++...
T Consensus 258 ~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~ 334 (393)
T PRK05764 258 KAMSKLQSHSTSNP--TSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLG 334 (393)
T ss_pred HHHHHHHhhcccCC--ChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccc
Confidence 99877665544444 3344444444443 4444466667788899999999988888743 456678888886521
Q ss_pred --HHHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 --KLYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 --~~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+..++.+.| .++||.+.++. .+++|+++. .+++++++++++|.+++++.
T Consensus 335 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~--~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 335 KSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYA--TSLEDLEEGLERIERFLESL 392 (393)
T ss_pred cccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 01247888877 67899997764 368999985 68999999999999888753
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=242.01 Aligned_cols=334 Identities=18% Similarity=0.194 Sum_probs=231.8
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHh----CCC---C-eEEcCCc-hHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVM----GKE---A-GLFVPSG-TMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~----~~~---~-~~~~~~g-t~a~~~~l~ 71 (359)
..++|..+.+..+. +.+.+++.+... ....|+...+...+|+.+++++ |.+ . .+++++| .+++..++.
T Consensus 34 ~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~ 113 (403)
T PRK08636 34 DIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQ 113 (403)
T ss_pred CEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHH
Confidence 56889887766443 445555544322 2345777778899999999987 432 2 3555555 556666666
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHH----HHHhcCCCCCccCCceeEEEEecc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLI----EAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l----~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
+++ .+||.|++++|+|.... ..+...|.+++.++.+ +++.+|++.+ ++.+++. .+++++++++ .
T Consensus 114 ~l~-~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~-----~~~~~~i~~~-~ 183 (403)
T PRK08636 114 AIT-NPGDVAIVPDPAYPIHS---QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRES-----SPKPKYVVVN-F 183 (403)
T ss_pred HhC-CCCCEEEEcCCCCcchH---HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhc-----cCCceEEEEe-C
Confidence 666 69999999999976644 3477889999988763 4467888755 4444421 1467888884 4
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCcc-EE-EEeccccCCCcee--eEEecC
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGS 220 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~ 220 (359)
++||||.+++.+++++|.++|++|+++||+||+|....+.. ...+...+....+ ++ +.|+||.||.|+. ||++++
T Consensus 184 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~ 263 (403)
T PRK08636 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGN 263 (403)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCC
Confidence 56799999999999999999999999999999965432211 1122233322223 33 4599999986544 999999
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 221 KEFIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
+++++.+.........+.+... +.++...+ +.++++.++.+.++++.+.+.|++. ++.+. .+..++++|+.++
T Consensus 264 ~~li~~~~~~~~~~~~~~~~~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~p~~g~~~~~~l~ 339 (403)
T PRK08636 264 KKLVGALKKIKSWLDYGMFTPI--QVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA-GWELQ-KPRASMFVWAKIP 339 (403)
T ss_pred HHHHHHHHHHHHHhcccCChHH--HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCcceEEEEECC
Confidence 9999998876654433332222 22222233 3445556667788889999999987 77653 4568999999997
Q ss_pred cch-HHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 298 EDS-KLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 298 ~~~-~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
... ..+..++.+.+ +++||.+.|+. .+++||++. .+++++++.+++|+++++.+
T Consensus 340 ~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 340 EPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred CccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 521 12457788775 68999997762 468999995 68999999999999988764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=246.96 Aligned_cols=327 Identities=19% Similarity=0.241 Sum_probs=238.4
Q ss_pred cccccCCCCC--ChHHHHHHHHHcCCCCC--------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhh
Q 018243 5 TVDLRSDTVT--KPTEAMRAAMASAEVDD--------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 5 ~id~~~~~~~--~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|.++++. .++|.+++++.+..... ..|+..+...++++.+++++|.+..++++||++|+..++..+.
T Consensus 48 ~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~ 127 (410)
T PRK13392 48 VTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLG 127 (410)
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHh
Confidence 5788887665 34588888887644321 2244555688999999999999888999999999998888665
Q ss_pred h-hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 75 E-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 75 ~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. .+|+.|+++...|.+.+. + +...|.++..++.+ |.+.+++.++.... +++++|++++++| |||.+
T Consensus 128 ~~~~g~~vi~~~~~h~s~~~-~--~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~----~~t~~v~i~~~~n-~tG~~ 194 (410)
T PRK13392 128 KLLPGCVILSDALNHASMIE-G--IRRSGAEKQVFRHN-----DLADLEEQLASVDP----DRPKLIAFESVYS-MDGDI 194 (410)
T ss_pred cCCCCCEEEEehhhhHHHHH-H--HHHcCCeEEEEeCC-----CHHHHHHHHHhccC----CCCEEEEEeCCCC-CCccc
Confidence 2 378888888888888765 3 56678777666543 66667776653210 4688999966655 99999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH---hhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR---RLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~---~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
.+ +++|.++|+++|+++|+||+|++|.+...+.... .+....|+++.|+||.||+ .|||+++++++++.++..
T Consensus 195 ~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~~~~~~l~~~ 270 (410)
T PRK13392 195 AP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASADLIDFVRSF 270 (410)
T ss_pred cc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCHHHHHHHHHh
Confidence 88 8999999999999999999998666543332222 1223467778899999997 457888899999987766
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+..+...++..++++..+++... ....+++.++++++++.|++. |+++. +..++++.+.++. ..+..++.
T Consensus 271 ~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~i~~~~--~~~~~~~~ 345 (410)
T PRK13392 271 APGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIPVM--PSPSHIVPVMVGD--PTLCKAIS 345 (410)
T ss_pred CcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEeCC--HHHHHHHH
Confidence 55433334344455666666664322 224566778899999999998 88764 3466776666553 13567899
Q ss_pred HHH-HhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 309 KKL-EEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 309 ~~l-~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++| .++||.+.+. +..++|++++..++++|+++++++|+++++++
T Consensus 346 ~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 346 DRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred HHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 988 5789998542 34689999999999999999999999988764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=243.17 Aligned_cols=324 Identities=19% Similarity=0.209 Sum_probs=230.8
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC----C--C--CeEEcCCc-hHHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG----K--E--AGLFVPSG-TMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~----~--~--~~~~~~~g-t~a~~~~l~ 71 (359)
+.+||+.+.+.. |.+.+.+++.+.... ...|....+..+++++++++++ . + ..+++++| ++++..++.
T Consensus 32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~ 111 (385)
T PRK09276 32 DVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPL 111 (385)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHH
Confidence 468899887654 347788887764322 2346666678899999999884 3 1 23555555 566666666
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
.++ ++||.|++++|+|... . ..++..|.+++.++.+. ++.+|++++++.+. .++++|+++++ +||
T Consensus 112 ~~~-~~gd~Vl~~~P~y~~~-~--~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~--------~~~~~v~l~~p-~NP 178 (385)
T PRK09276 112 AFV-NPGDVVLVPDPGYPVY-K--IGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA--------KKAKLMFINYP-NNP 178 (385)
T ss_pred HhC-CCCCEEEEcCCCCcCh-H--HHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc--------ccceEEEEeCC-CCC
Confidence 666 6999999999997654 3 33778899999887653 35679999988887 67899999654 679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCcc--EEEEeccccCCCcee--eEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAAD--SASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d--~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
||.+++.+++++|+++|++||++||+||+|....+.. ...+...+....+ ++..|+||.||.++. ||++++++++
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~ 258 (385)
T PRK09276 179 TGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLI 258 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHH
Confidence 9999999999999999999999999999975432211 1112222221112 444599999986543 8999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.+.........+. +...+.++...+ +.+.++.++++.++++++.+.|++. ++++. ++..+.++|+.++..
T Consensus 259 ~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~v~~~~~-- 332 (385)
T PRK09276 259 AGLGKVKSNVDSGV--FQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-GLEVE-PPKATFYVWAPVPKG-- 332 (385)
T ss_pred HHHHHHHhhccCCC--CHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEEECCCC--
Confidence 99887665544433 223334444444 3445556667788899999999998 87764 344677789998752
Q ss_pred HHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 302 ~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
.+..++.++| .++||.+.++. .+++||+++ .+++++.+++++|.+
T Consensus 333 ~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 333 YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK 384 (385)
T ss_pred CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence 4677888888 57899997762 468999995 577888888877753
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=240.13 Aligned_cols=331 Identities=17% Similarity=0.144 Sum_probs=235.7
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC----C---C--CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG----K---E--AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~----~---~--~~~~~~~gt~a~~~~l~ 71 (359)
++.|||..+.+..| ++.+.+++.+.... ...|+..++..++|++++++++ . + ..++++|+++|+..++.
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~ 107 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFR 107 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 45689999877644 36777887775443 3457667788999999999884 2 1 23555566778888887
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
.++ ++||.|++++|+|... . ......|++++.++.+. ++.+|.+++++.++ ++++++++. .++|||
T Consensus 108 ~l~-~~gd~Vl~~~p~y~~~-~--~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~i~i~-~p~NPt 174 (387)
T PRK07683 108 TIL-EPGTEVILPAPIYPGY-E--PIIRLCGAKPVFIDTRSTGFRLTAEALENAIT--------EKTRCVVLP-YPSNPT 174 (387)
T ss_pred HhC-CCCCEEEEcCCCccch-H--HHHHHcCCEEEEeecCcccCCCCHHHHHHhcC--------cCceEEEEe-CCCCCC
Confidence 777 5999999999997654 3 33677899999987653 46678899999887 678888884 556799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcC-ccEE-EEeccccCCCcee--eEEecCHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQA-ADSA-SVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~-~d~~-~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
|.+++.+++++|+++|+++|++||+|++|..........+...+... ..++ ..|+||.+|.|+- ||+++++++++.
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~ 254 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKH 254 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHH
Confidence 99999999999999999999999999997543322112223332111 1244 4599999996543 999999999998
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+.........+. +...+.++...+. ...++.++++.++++.+.+.|++. ++.+. ++..+.++|..++. ...+
T Consensus 255 ~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~-~~~~ 329 (387)
T PRK07683 255 ILKVHQYNVTCA--SSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-GLDVE-KPTGAFYLFPSIGH-FTMS 329 (387)
T ss_pred HHHHHHhccCCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCeeEEEEEeccc-CCCC
Confidence 876644333222 2233444444443 334445666778889999999887 77764 34567778877764 1235
Q ss_pred HHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..++...| +++||.+.|+. .+++||++. .+++++++.+++|.+++++-
T Consensus 330 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 330 SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 56677664 88999997753 468999996 47899999999999887643
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=244.00 Aligned_cols=328 Identities=17% Similarity=0.098 Sum_probs=234.1
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHH----hCCC-----CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKV----MGKE-----AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~----~~~~-----~~~~~~~gt~a~~~~l~~ 72 (359)
..|+|..+.+..+ .+.+.+++.+... ....|....+..++++.++++ ++.+ ..++++|+++++..++..
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 110 (386)
T PRK09082 31 GAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILA 110 (386)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHH
Confidence 4588988766644 4677777766432 234466666777777777765 4653 235556667888888888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ .+||+|++++|+|..... .++..|.+++.++.+ +++.+|++++++.++ +++++|++++ ++||||
T Consensus 111 ~~-~~gd~Vli~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~-p~NPtG 177 (386)
T PRK09082 111 LV-RPGDEVIVFDPSYDSYAP---AIELAGGRAVRVALQPPDFRVDWQRFAAAIS--------PRTRLIILNT-PHNPSG 177 (386)
T ss_pred Hc-CCCCEEEEeCCCchhhHH---HHHHcCCEEEEEecCcccccCCHHHHHHhcC--------ccceEEEEeC-CCCCCC
Confidence 87 599999999999877543 366778899999775 457889999999988 6788998865 467999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc--CccEEEEeccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|.++|++||+++|+|++|....+.. .+.+...+.. ...+++.|+||.+|.|+. ||+++++++++.
T Consensus 178 ~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 178 TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAE 257 (386)
T ss_pred cCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHH
Confidence 99999999999999999999999999975433321 1223333321 122444599999986553 899999999999
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHH-HHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVA-LQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
++........+.+...+.+++.... .+.+.++.++.+.++++.+.+.|++. ++++. ++..+.++|+.++...+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~ 335 (386)
T PRK09082 258 FRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAISDLDDV 335 (386)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccCCCCHH
Confidence 8877655444443333332222221 23445545667788999999999986 88764 345677899998631124678
Q ss_pred HHHHHH-HhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 306 CLLKKL-EEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 306 ~~~~~l-~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++.+.| +++||.+.|++ .+++|++++ .+++++++.+++|++
T Consensus 336 ~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 336 EFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ 385 (386)
T ss_pred HHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 898987 78999986653 357999996 478899999988875
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=241.81 Aligned_cols=338 Identities=13% Similarity=0.119 Sum_probs=230.2
Q ss_pred cccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC-------CeE-EcCCchHHHH
Q 018243 3 TRTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE-------AGL-FVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~-------~~~-~~~~gt~a~~ 67 (359)
+..|+|.-+.+. .+++.+.+++.+.... ...|++..+..+++++++++++.. ..+ +++++++++.
T Consensus 32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~ 111 (409)
T PLN00143 32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAE 111 (409)
T ss_pred CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHH
Confidence 456888887774 4457887887765433 244777788899999999998432 124 4555556777
Q ss_pred HHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 68 ISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 68 ~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
.++..++ .+||.|++++|+|... . ..+...|.+++.++.. +++.+|+++|++.++ .+++.+++.+|
T Consensus 112 ~~~~~l~-~~gd~v~v~~P~y~~~-~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~~~~~nP 179 (409)
T PLN00143 112 IIIKVLA-RPEANILLPRPGFPDV-E--TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIAD--------ENTIAMVIINP 179 (409)
T ss_pred HHHHHHc-CCCCEEEEcCCCCcCH-H--HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcc--------cCCEEEEEECC
Confidence 7777777 5999999999997654 3 3477888888888753 456789999999887 57788888665
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCccEEEE-eccccCCCcee--eEEec-C
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG-S 220 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~-~ 220 (359)
|||||.+++.+++++|+++|++|+++||+||+|....+... ..+...+.....++++ |+||.|+.|+. ||+++ +
T Consensus 180 -~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~ 258 (409)
T PLN00143 180 -GNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCD 258 (409)
T ss_pred -CCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeC
Confidence 67999999999999999999999999999999643322111 1122223222235554 99999887654 88887 3
Q ss_pred H-HHHHH---HHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 221 K-EFIKK---ARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 221 ~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
+ .+.+. +..+..........+.+.+.++...++ .+.++.+++..++++.+.+.|+++++......+.+++++
T Consensus 259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~ 338 (409)
T PLN00143 259 PSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFA 338 (409)
T ss_pred chhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEE
Confidence 3 33322 122222211111113344444444453 345556677778888888999887444332345689999
Q ss_pred EEEeccc--hHH-HHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 293 YFEITED--SKL-YAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 293 ~~~~~~~--~~~-~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
|++++.. .+. +..++...+ .++||.+.|+. .+++||+++ .+++++++.+++|.+++++..+
T Consensus 339 w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 339 LVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred EEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHHhcc
Confidence 9998631 011 345565555 89999998864 468999995 6789999999999999887654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=241.23 Aligned_cols=328 Identities=17% Similarity=0.138 Sum_probs=234.1
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh----CC--C--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM----GK--E--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~~--~--~~~~~~~gt~a~~~~l~~ 72 (359)
...++|..+.+.. +.+.+.+++.+... ....|+...+..++++.+++++ |. + ..++++|+++++..++..
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 109 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLA 109 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHH
Confidence 3568898887664 34777777776443 2344666677899999999987 32 1 235666667777777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++||+|++++|+|..... .+...|.+++.++.+. ++.+|++++++.++ +++++|++.++ +|||
T Consensus 110 l~-~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~v~l~~p-~NPt 176 (388)
T PRK07337 110 LV-ERGDEVLMPDPSYPCNRH---FVAAAEGRPVLVPSGPAERFQLTAADVEAAWG--------ERTRGVLLASP-SNPT 176 (388)
T ss_pred hc-CCCCEEEEeCCCchhhHH---HHHHcCCEEEEeecCCccCCcCCHHHHHhhcC--------ccceEEEEECC-CCCC
Confidence 76 699999999999887553 3566788888887653 46889999999888 68889888554 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKA 227 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~ 227 (359)
|.+++.+++++|+++|+++++++|+||+|.. +.+.+..........+++++ |+||.||.|+. ||+++++++++.+
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~--~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTIVDEIYQG--LSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTF 254 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEEEeccccc--cccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHH
Confidence 9999999999999999999999999999643 22222111111113456555 99999986553 9999999999988
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc---h
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED---S 300 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~---~ 300 (359)
.......+.+.+.. .+.++...+. ....+.++.+.++++.+.+.|++. ++.+...+.+++++|++++.. .
T Consensus 255 ~~~~~~~~~~~s~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~~~ 331 (388)
T PRK07337 255 EKLAQNLFICASAL--AQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPA 331 (388)
T ss_pred HHHHHHhccCCChH--HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccCCC
Confidence 77766555444333 3333333332 223335667778889999999987 766422356889999998641 1
Q ss_pred HHHHHHHHHHH-HhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+..++.++| .++||.+.|+. .+++|++++ .+++++++.+++|.+++
T Consensus 332 ~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 332 AGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF 387 (388)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 13567888775 78999997652 468999996 46888999998887754
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=236.59 Aligned_cols=317 Identities=22% Similarity=0.245 Sum_probs=246.4
Q ss_pred ccccccCCC-CCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhC-CC-CeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDT-VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMG-KE-AGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~-~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
..+||+++- +.+|+|.+.+++.+.......|.. +...++++.++++++ .+ ..++.++|+..++..+..++..+||+
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd-~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~ 101 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPD-PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDT 101 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCE
Confidence 468898874 446668888888876544445544 478899999999999 55 35787888888887777776679999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+ |+.|. ..++..|++++.++..+ +..|++.+.+.++ .++++|+++| +|||||..++.++++
T Consensus 102 vl~~~Pt-f~~Y~--~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~--------~~~~lv~i~n-PNNPTG~~~~~~~l~ 168 (356)
T COG0079 102 VLIPEPT-FSMYE--IAAQLAGAEVVKVPLKE-FRLDLDAILAAIR--------DKTKLVFLCN-PNNPTGTLLPREELR 168 (356)
T ss_pred EEEcCCC-hHHHH--HHHHhcCCeEEEecccc-cccCHHHHHHhhh--------cCCCEEEEeC-CCCCCCCCCCHHHHH
Confidence 9999999 55566 45889999999998877 8899999999999 6789999955 555999999999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
++.+.+.+ +.++|+|||| ..+. +.+...+....+ ++++ |+||.||.++. |+.++++++++.+++.+..+..
T Consensus 169 ~l~~~~~~-~~~vVvDEAY--~eF~--~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~v 243 (356)
T COG0079 169 ALLEALPE-GGLVVIDEAY--IEFS--PESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNV 243 (356)
T ss_pred HHHHhCCC-CcEEEEeCch--hhcC--CchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCCC
Confidence 99999888 9999999995 3333 233333332334 7766 99999997544 9999999999999888776554
Q ss_pred CcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 237 GMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+ ....+++..++ +++.++.+++..+.++++.+.|+.+ ++. +. +..++|++++++. .. +..+.++|.+
T Consensus 244 ~----~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~-~~~~v~--pS~aNFvlv~~~~--~~-~~~l~~~L~~ 313 (356)
T COG0079 244 S----SPALAAAIAALRDADYLEESVERIREERERLYAALKAL-GLFGVF--PSQANFVLVRVPD--AE-AAALAEALLK 313 (356)
T ss_pred C----HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeec--CCCCcEEEEECCC--cc-HHHHHHHHHH
Confidence 3 34455555544 3556667778888999999999999 454 43 5579999999986 23 6689999999
Q ss_pred cCceeccCC-----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPES-----STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 314 ~gi~~~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+||.++..+ .+++||++ -++++.++++++|+++++.
T Consensus 314 ~giivR~~~~~~~~~~~lRitv---gt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 314 KGILVRDCSSVGLLPGYLRITV---GTPEENDRLLAALREVLKG 354 (356)
T ss_pred CCEEEEeCCCCCCCCCeEEEEe---CCHHHHHHHHHHHHHHHhc
Confidence 999996653 46899999 4677779999999988764
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=242.73 Aligned_cols=329 Identities=16% Similarity=0.112 Sum_probs=233.0
Q ss_pred ccccccCCCC-----CChHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHhCC-----C--CeEEcCCchHHHHHH
Q 018243 4 RTVDLRSDTV-----TKPTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVMGK-----E--AGLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~-----~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~-----~--~~~~~~~gt~a~~~~ 69 (359)
.+++|..+.+ ..|.+.+.+++.+..... ..|+..++..+++++++++++. + ..++++|+++++..+
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~ 111 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMC 111 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHH
Confidence 5688888765 355688888887754432 3477778889999999999973 2 235666667788888
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+.+++ ++|++|++++|+|... . ..+...|++++.++.+ .++.+|++.+++.++ .++++|++++ ++
T Consensus 112 ~~~l~-~~gd~v~i~~P~y~~~-~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~-p~ 178 (401)
T TIGR01264 112 IAALA-NAGQNILVPRPGFPLY-E--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID--------EKTAALIVNN-PS 178 (401)
T ss_pred HHHhC-CCCCEEEEeCCCChhH-H--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc--------cCceEEEEcC-CC
Confidence 87777 5999999999997654 3 3477888888888654 357899999999887 5678888855 57
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhcCccEEEE-eccccCCCcee--eEEecCH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSK 221 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~ 221 (359)
||||.+++.+++++|+++|+++|++||+||+|.... +.+. +...+.....++++ |+||.|+.|+. ||+++++
T Consensus 179 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~ 256 (401)
T TIGR01264 179 NPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMV--FSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHD 256 (401)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhc--cCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecC
Confidence 799999999999999999999999999999964322 2222 22333222235554 99999877644 8888753
Q ss_pred ------HHHHHHHHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE
Q 018243 222 ------EFIKKARRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI 291 (359)
Q Consensus 222 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 291 (359)
++++.++..... ..+. +.+.+.++...+ +.+.++.++++.++++.+.+.|++++++.+. .+.+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f 332 (401)
T TIGR01264 257 RRGILRDIRDGLVKLSQR-ILGP--CTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV-MPSGAMY 332 (401)
T ss_pred cchhHHHHHHHHHHHhhc-cCCC--CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-CCCeeeE
Confidence 333443333221 1122 223333333333 2445556677888899999999998777653 3568999
Q ss_pred EEEEeccc---hHHHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 292 VYFEITED---SKLYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 292 ~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+|+.++.. ...+..++.++| +++||.+.|++ .+++|++++ .+++++++.+++|.++++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 333 MMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLT--VPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHhcc
Confidence 99997531 112456788887 68999998763 468999995 56899999999999888653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=242.75 Aligned_cols=330 Identities=17% Similarity=0.136 Sum_probs=236.7
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhC----C---C--CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMG----K---E--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~----~---~--~~~~~~~gt~a~~~~l~~ 72 (359)
..|||..+.+..+. +.+.+++.+... ....|+...+..++++.++++++ . + ..++++|+++++..++..
T Consensus 27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~ 106 (387)
T PRK08912 27 GAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLA 106 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHH
Confidence 56889887666543 566666655332 23457777778899999998863 2 1 235566667777777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ ++||.|++++|+|.... ..++..|.+++.++.+ +++.+|++.+++.+. ++++++++.+ ++||||
T Consensus 107 ~~-~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~v~l~~-p~NPtG 173 (387)
T PRK08912 107 LV-EPGDEVVLFQPLYDAYL---PLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS--------PRTKAVLLNN-PLNPAG 173 (387)
T ss_pred hc-CCCCEEEEeCCCchhhH---HHHHHcCCEEEEEecCcccCcCCHHHHHHHhC--------ccceEEEEeC-CCCCcC
Confidence 77 59999999999976644 3477889999888775 357889999999987 6788998864 567999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc--CccEEEEeccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|.++|++|+++||+||+|....+.. ...+...+.. ..++++.|+||.||.++- ||+++++++++.
T Consensus 174 ~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~ 253 (387)
T PRK08912 174 KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRV 253 (387)
T ss_pred cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHH
Confidence 99999999999999999999999999974332211 1112222211 233556699999986542 899999999998
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEecc-chHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE-DSKL 302 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 302 (359)
+.........+. ++....++...+ ..+.++.++++.++++.+.+.|++. |+++. ++.++.++|+.++. ....
T Consensus 254 l~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~l~~~l~~~~~~~ 329 (387)
T PRK08912 254 LAKAHQFLTFTT--PPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-GFPVL-PSQGTYFLTVDLAPLGLAE 329 (387)
T ss_pred HHHHHhhccccC--ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEecccccCCCC
Confidence 876665544333 222333333333 3445556777888999999999998 88764 34567788988864 1113
Q ss_pred HHHHHHHHH-HhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKL-EEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 303 ~~~~~~~~l-~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+..++.+.| .++||.+.|+. .+++|++++ .+++.+++.+++|.+.+++
T Consensus 330 ~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 330 DDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR 386 (387)
T ss_pred CHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence 677888887 67899997642 368999996 4689999999999887653
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=221.80 Aligned_cols=334 Identities=15% Similarity=0.139 Sum_probs=253.0
Q ss_pred ccccccCCCCC----C-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC--------CeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT----K-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE--------AGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~----~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~--------~~~~~~~gt~a~~~ 68 (359)
++|-+..+.++ + ..++..+|+..+... .+.|+++.+....|++++++++.+ +.+++++.++|+..
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~ 141 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIEL 141 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHH
Confidence 56677775443 2 227777777765543 557889999999999999996543 34677777899999
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeee--cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK--NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++.++. +||..|++|+|. ++.|. .-+...|+++++++ .+.+|.+|++.++..++ ++|.++++.||+
T Consensus 142 ~i~~LA-~p~aNILlPrPG-fp~Y~--~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D--------ENT~AivviNP~ 209 (447)
T KOG0259|consen 142 AISSLA-NPGANILLPRPG-FPLYD--TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD--------ENTVAIVVINPN 209 (447)
T ss_pred HHHHhc-CCCCceecCCCC-CchHH--HhhhhcCceeEeecccCcccceechHHHHHhhc--------cCeeEEEEeCCC
Confidence 999999 699999999999 55676 44788899999884 35779999999999999 789999885655
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCccEEEE-eccccCCCcee--eEEecC--
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGS-- 220 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~-- 220 (359)
||.|.+|+.+-+++|++.|+++|++||.||+|....++.. ..++..+...+.++++ |.||.+-.|++ ||++..
T Consensus 210 -NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~ 288 (447)
T KOG0259|consen 210 -NPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDP 288 (447)
T ss_pred -CCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecc
Confidence 5999999999999999999999999999999655444422 2345555556678887 99999988877 777752
Q ss_pred ------HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce
Q 018243 221 ------KEFIKKARRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN 290 (359)
Q Consensus 221 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~ 290 (359)
...++.+ ......+..+..+++++.-.-| +++....+.-.+.+++.-.+.|+++|++.....|.++.
T Consensus 289 ~gvf~~~~~~q~~---~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~m 365 (447)
T KOG0259|consen 289 RGVFRDTKVVQGI---KNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCM 365 (447)
T ss_pred cccccchHHHHHH---HHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcce
Confidence 2233343 3333333333445555554334 45555566678889999999999999998545567888
Q ss_pred EEEEEeccc---hHHHHHHHHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 291 IVYFEITED---SKLYAACLLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
++|+.++-. +..+..+|+++| +++.+.+-|| -.+++|+++ ....+.+++++++|+++..+-.+
T Consensus 366 ylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i--~~~~~~leea~~Rik~Fc~RH~~ 436 (447)
T KOG0259|consen 366 YLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVI--TVEEEMLEEAFSRIKEFCDRHSK 436 (447)
T ss_pred EEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEE--ccChHHHHHHHHHHHHHHHhhhh
Confidence 999887642 123566899999 8899998776 367899999 68999999999999999877653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=240.84 Aligned_cols=334 Identities=16% Similarity=0.101 Sum_probs=232.2
Q ss_pred ccccccCCCCC----ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCC--------CeEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVT----KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKE--------AGLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~----~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~--------~~~~~~~gt~a~~~~l 70 (359)
.+|||..+.+. .|++.+.+++.+.... ...|+..++..++++.++++++.. ..++++|+++++..++
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~ 110 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIF 110 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence 56899988873 4668888888765432 345777788999999999998432 1245555667777777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceee-ecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTV-KNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
.+++ ++||.|++++|+|..... .+...|.+++.+ +.+ +++.+|++++++.++ +++++|+++++ +|
T Consensus 111 ~~~~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p-~N 177 (398)
T PRK08363 111 GALL-DPGDEILIPGPSYPPYTG---LVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT--------EKTKAIAVINP-NN 177 (398)
T ss_pred HHhC-CCCCEEEEcCCCCcchHH---HHHHcCCEEEEeccccccCCcCCHHHHHhhCC--------cceEEEEEECC-CC
Confidence 7776 699999999999777553 366777777777 443 345689999999887 67899999654 66
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEec--CHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG--SKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~--~~~~ 223 (359)
|||.+++.+++++|.++|+++|+++|+|++|....+.....+...+.....++++ |+||.|+.|+- ||++. ++++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~ 257 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGK 257 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHH
Confidence 9999999999999999999999999999997543221111223333322335555 99999876543 77775 6777
Q ss_pred HHHHHHHHHhh-CCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc
Q 018243 224 IKKARRLRKTL-GGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
++.+....... ......+...+.++...+ .++.++.++++.++++.+.+.|++++++.+. .+.++.++|+.++..
T Consensus 258 ~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~ 336 (398)
T PRK08363 258 LAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEG 336 (398)
T ss_pred HHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEeccC
Confidence 66655433221 111222333344444444 3455556777888899999999988787763 445666777777641
Q ss_pred hHHHHHHHH-HHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLL-KKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 300 ~~~~~~~~~-~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+..++. +.|.++||.+.|+. .+++|+++. .+++++++++++|++++++.
T Consensus 337 ~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 337 PWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL--PPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 001334554 45589999997753 468999994 67899999999999988764
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=242.93 Aligned_cols=322 Identities=19% Similarity=0.253 Sum_probs=235.0
Q ss_pred ccccccCCCCCChH--HHHHHHHHcCCCC-------CCc-cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT--EAMRAAMASAEVD-------DDV-LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~--~~~~~a~~~~~~~-------~~~-~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
..+||.+..+..-. |++++++.++... ... ....+...++++.+++++|.+.+++++||++|+..++.++
T Consensus 55 ~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l 134 (407)
T PRK07179 55 DAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTI 134 (407)
T ss_pred cEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh
Confidence 46889887665433 8888888765421 111 2223577999999999999998999999999999999998
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. .+|+.|+++.+.|.+.+. + +...|++++.++. .|++++++.+++ .++++|++++ .+||||.+
T Consensus 135 ~-~~g~~v~~~~~~h~s~~~-~--~~~~g~~~~~~~~-----~d~~~l~~~l~~-------~~~~lV~v~~-v~n~tG~i 197 (407)
T PRK07179 135 A-DPNTPVYIDFFAHMSLWE-G--VRAAGAQAHPFRH-----NDVDHLRRQIER-------HGPGIIVVDS-VYSTTGTI 197 (407)
T ss_pred C-CCCCEEEEECCcCHHHHH-H--HHHCCCeEEEecC-----CCHHHHHHHHHh-------cCCeEEEECC-CCCCCCcc
Confidence 8 489999999999988875 3 5566777666644 399999999973 2477888855 45599999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-hh--hcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RL--VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~--~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
.| +++|.++|+++|+++|+||+|++|..+..+.... .+ ...+|+++.|+||++|++ +|++++++++++.+...
T Consensus 198 ~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~~ 273 (407)
T PRK07179 198 AP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR-AGIITCPRELAEYVPFV 273 (407)
T ss_pred cc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHHh
Confidence 98 7899999999999999999998765543333222 22 124688899999999864 67788888887776543
Q ss_pred HHh--hCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 231 RKT--LGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 231 ~~~--~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
... ++.+. .+...++...+++.. .+..+++..++++++++.|+++ |+++. ..++++++.++. ..+...
T Consensus 274 ~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~---~~~~i~~l~~~~--~~~~~~ 345 (407)
T PRK07179 274 SYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYNIR---SESQIIALETGS--ERNTEV 345 (407)
T ss_pred CcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC---CCCCEEEEEeCC--HHHHHH
Confidence 322 23332 222223333333322 1236677889999999999998 88764 256778877654 135678
Q ss_pred HHHHHHhcCcee----ccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV----MPE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 307 ~~~~l~~~gi~~----~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+.|.++||.+ .|. +...+||+++..++++|+++++++|++++++..
T Consensus 346 ~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 346 LRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 888999999974 232 357899999999999999999999999988764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=241.29 Aligned_cols=324 Identities=17% Similarity=0.251 Sum_probs=231.9
Q ss_pred ChHHHHHHHHHcCCCCCC---------ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 15 KPTEAMRAAMASAEVDDD---------VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 15 ~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
++.+++.+++.+...... .....+...++|+.+++++|.+..++++||++++..++.+++ ++|++|+++.
T Consensus 31 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~-~~gd~Vlv~~ 109 (387)
T PRK09331 31 ILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC-KKGDYVVLDG 109 (387)
T ss_pred CCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEECC
Confidence 344788888876442211 122356789999999999999988999999999999999987 5999999999
Q ss_pred CCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 86 NSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
++|++.+. + ++..|++++.++. ++++.+|++++++.+++..+ ...+++++|+++++.+ +||...+ +++|.
T Consensus 110 ~~h~s~~~-~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~lV~l~~~~~-~tG~~~~---l~~I~ 181 (387)
T PRK09331 110 LAHYTSYV-A--AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKE-ETGKPPALALLTHVDG-NYGNLAD---AKKVA 181 (387)
T ss_pred CchHHHHH-H--HHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhh-ccCCCCEEEEEECCCC-CCccccc---HHHHH
Confidence 99999886 3 6778999999987 56788999999999974211 0113688999977654 8998776 89999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh--------h
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT--------L 234 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~--------~ 234 (359)
++|+++|+++|+|++|+.|..+. +... .++|+++.|+||++++|.| |++++++++++.+...... +
T Consensus 182 ~la~~~g~~livD~a~~~g~~~~---~~~~--~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~ 256 (387)
T PRK09331 182 KVAHEYGIPFLLNGAYTVGRMPV---DGKK--LGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELL 256 (387)
T ss_pred HHHHHcCCEEEEECCcccCCcCC---CHHH--cCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeee
Confidence 99999999999999987765432 2222 2789999999999987665 8999999888876543321 2
Q ss_pred CCCcchhHHHHHH-HHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-CccceEEEEEeccc------hHHHHHH
Q 018243 235 GGGMRQVGVLCAA-ALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVETNIVYFEITED------SKLYAAC 306 (359)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~------~~~~~~~ 306 (359)
+.+..+.+..... ++..+.+..+ +.++..++++++++.|++++|+++... +...+++.+..+.- ...++.+
T Consensus 257 ~~~~~~~~~~~~~aal~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (387)
T PRK09331 257 GCTLRGAPLVTLMASFPHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFF 335 (387)
T ss_pred ceecCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchh
Confidence 2222222222111 1222233333 455667788899999999999998632 22455555554420 1123457
Q ss_pred HHHHHHhcCceeccCCCcE-EEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLVMPESSTR-VRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 307 ~~~~l~~~gi~~~~~~~~~-lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+.|.++||...+.+... +|+.. .+++++++++++++|+++++++.
T Consensus 336 ~~~~L~~~gI~~~~~~~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 336 LYEELKKRGIHGIKPGATKEFKLST-YGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred HHHHHHHcCceEEccCCceEEEEEe-ccCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999965555444 55544 46899999999999999988754
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=243.48 Aligned_cols=329 Identities=18% Similarity=0.218 Sum_probs=238.7
Q ss_pred ccccccCCCCCChH--HHHHHHHHcCCCCCC--------ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT--EAMRAAMASAEVDDD--------VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
+.++|.|+++.+.. |++++++.+...... .++..+...++++.+++++|.+.++++++|++|+..++..+
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l 125 (402)
T TIGR01821 46 DVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATL 125 (402)
T ss_pred eEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHh
Confidence 45899998887443 888888877543211 23456778999999999999888899999999999999887
Q ss_pred hh-hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 74 CE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 74 ~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
.. .+++.|+.+...|.+... + +...|+++..++.+ |.+++++.++...+ .++++|+++++.+ |+|.
T Consensus 126 ~~~~~~~~v~~~~~~h~s~~~-~--~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~----~~~~~v~~e~~~~-~~G~ 192 (402)
T TIGR01821 126 AKIIPGCVIFSDELNHASMIE-G--IRHSGAEKFIFRHN-----DVAHLEKLLQSVDP----NRPKIIAFESVYS-MDGD 192 (402)
T ss_pred hCCCCCCEEEEcchHhHHHHH-H--HHHcCCeEEEECCC-----CHHHHHHHHHhccC----CCCeEEEEcCCCC-CCCC
Confidence 63 256667677677877654 2 55667666555543 78888888863210 3578899977665 9999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+.| +++|.++|++||+++|+||+|++|.+...+..... +....|++..+++|.||+ .|||+++++++++.++.
T Consensus 193 ~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~~~~~~l~~ 268 (402)
T TIGR01821 193 IAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASRKLIDAIRS 268 (402)
T ss_pred ccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCHHHHHHHHH
Confidence 988 89999999999999999999986655433322111 222457777799999986 56788899999888765
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+...++..++++..+++... +...++..++.+++.+.|+++ |+++.. ..++++.+.+... ..+.++
T Consensus 269 ~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~i~~i~~~~~--~~a~~~ 343 (402)
T TIGR01821 269 YAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIPVIP--NPSHIVPVIIGDA--ALCKKV 343 (402)
T ss_pred hCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCC--CCCCEEEEEeCCH--HHHHHH
Confidence 544333333345556666666665432 224455668889999999988 877642 3577777766541 356788
Q ss_pred HHHHH-hcCceecc-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLE-EHGVLVMP-------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~-~~gi~~~~-------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+.|. ++||.+.+ .+..++|++++..++++|+++++++|+++++++.
T Consensus 344 ~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 344 SDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLG 398 (402)
T ss_pred HHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 88884 67999844 2446899999999999999999999999987653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=239.58 Aligned_cols=332 Identities=20% Similarity=0.259 Sum_probs=237.8
Q ss_pred cccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 7 DLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 7 d~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
||.++..+.+ .+++.+++.. +...|+.+++..+||++++++++.+++++++||++|+..++.+++ ++|| |++++
T Consensus 49 D~~tds~t~a~~~a~~~a~~~---g~~~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all-~pGD-Vii~~ 123 (460)
T PRK13238 49 DLLTDSGTGAMSDRQWAAMMR---GDEAYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLI-KKGD-VVPSN 123 (460)
T ss_pred CCCCCCCchhhhHHHHHHHHh---CCcccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhC-CCCC-EEccC
Confidence 4444442222 2445555543 556799999999999999999999999999999999999988887 5999 88888
Q ss_pred CCcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc-eec
Q 018243 86 NSHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG-RCL 154 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG-~~~ 154 (359)
|. +..+. ....+.|.+++.++.+. .|.+|+++|++.++... .+++++|+++ .++|||| .++
T Consensus 124 p~-~~~~~--~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~----~~~tk~Ivl~-~p~NptGG~v~ 195 (460)
T PRK13238 124 YH-FDTTR--AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG----AENVPFIVMT-ITNNSAGGQPV 195 (460)
T ss_pred Cc-ccchH--HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC----CCceeEEEEe-cCCCCCCCcCC
Confidence 84 55565 44778899999887642 24599999999998310 0368899985 5556987 999
Q ss_pred ChhhHHHHHHHHHHcCcEEEEecccccchh--------hhcCchhHhh----hcCccEEEEeccccCCCceeeEEecC-H
Q 018243 155 SVEYTDSVGEIAKKHGLKLHIDGARIFNAA--------VALGVPVRRL----VQAADSASVCLSKGLGAPVGSVIVGS-K 221 (359)
Q Consensus 155 ~~~~l~~i~~~~~~~~~~li~D~a~~~~~~--------~~~~~~~~~~----~~~~d~~~~s~~K~~g~~~gg~~~~~-~ 221 (359)
+.+++++|.++|++||++||+|++|.++.. .+.+.+..++ ....|++++|.+|.+.+|.||+++.+ +
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~ 275 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDE 275 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChH
Confidence 999999999999999999999998865322 1123344333 24689999999998888889988887 6
Q ss_pred HHHHHHHHHHHh-hCC-Ccch-hHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 222 EFIKKARRLRKT-LGG-GMRQ-VGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 222 ~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
++.++++..... .+. ++.. +...+.+...++++..+ ...+...+++++|.+.|++. |+.+.. |.++.++++.+.
T Consensus 276 ~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~-p~Gg~~v~~d~~ 353 (460)
T PRK13238 276 DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GVPIQT-PAGGHAVFVDAG 353 (460)
T ss_pred HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC-CCCeEc-cCCceEEEEEch
Confidence 788887655321 121 1211 22223333444443222 24445556689999999998 999864 567888888875
Q ss_pred cc------hHHHHHHHHHHH-HhcCceeccCC-----------------CcEEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Q 018243 298 ED------SKLYAACLLKKL-EEHGVLVMPES-----------------STRVRIVVHH-QISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 298 ~~------~~~~~~~~~~~l-~~~gi~~~~~~-----------------~~~lRi~~~~-~~~~~~i~~~~~~l~~~~~~ 352 (359)
.- .+....+++.+| .+.||.++|++ ...+|+++.- ..+.++++.++++|.++.++
T Consensus 354 ~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 354 KFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred hcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 31 012357788888 89999997653 3679999742 34899999999999988754
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
-
T Consensus 434 ~ 434 (460)
T PRK13238 434 R 434 (460)
T ss_pred H
Confidence 3
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=240.05 Aligned_cols=323 Identities=16% Similarity=0.117 Sum_probs=229.8
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----C----CCC--eEEcCC-chHHHHHHH
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----G----KEA--GLFVPS-GTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~----~~~--~~~~~~-gt~a~~~~l 70 (359)
...|+|..+.+. .|++.+.+++.+.......|+...+..++++.+++++ + .+. .+++++ +++++..++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~ 107 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFA 107 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHH
Confidence 357889887665 4458888888875544456777778899999999987 3 332 355555 456666666
Q ss_pred HHhhhhcCCe--EEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVHCETRGSE--VILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~~~~~g~~--vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..++ ++|+. |+++.|+|.. +. ..+...|.+++.++.++ ++.+|++++++.+. .++++|++. .+
T Consensus 108 ~~l~-~~gd~~~vlv~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~-~p 174 (393)
T TIGR03538 108 QAVI-NPGQAPLVVMPNPFYQI-YE--GAALLAGAEPYFLNCTAENGFLPDFDAVPESVW--------RRCQLLFVC-SP 174 (393)
T ss_pred HHHc-CCCCcceEEecCCCCcc-hH--HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh--------hcceEEEEe-CC
Confidence 7666 58886 9999999655 44 34778899999997753 35689999999887 578999985 56
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhH-h---hh--cCccEEE-EeccccCCCcee--e
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVR-R---LV--QAADSAS-VCLSKGLGAPVG--S 215 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~-~---~~--~~~d~~~-~s~~K~~g~~~g--g 215 (359)
+||||.+++.+++++|+++|++|+++||+||+|....... ...+.. . .. ....+++ .|+||.++.++. |
T Consensus 175 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG 254 (393)
T TIGR03538 175 GNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSG 254 (393)
T ss_pred CCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceE
Confidence 7799999999999999999999999999999975332210 011111 1 10 0112444 499998876544 8
Q ss_pred EEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 216 VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
|+++++++++.+.......+.+. +...+.++...+ +.+.+..++.++++++.+.+.|++. +.+ ..+.+++++|
T Consensus 255 ~~i~~~~l~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~-~~p~gg~f~~ 329 (393)
T TIGR03538 255 FVAGDAEILKAFLRYRTYHGCAM--PIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--LDL-ELPDAGFYLW 329 (393)
T ss_pred EEecCHHHHHHHHHHHHhhccCc--CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--Ccc-cCCCeeEEEE
Confidence 99999999998877665444333 333333433334 3445556667788888888888875 333 2356899999
Q ss_pred EEeccchHHHHHHHHHHH-HhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKL-EEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+.++. +..++.+.| +++||.+.|+. .+++||++. .+++++++++++|.+.
T Consensus 330 ~~~~~----~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~--~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 330 PKVPG----DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALV--APLEECVEAAERIRSF 392 (393)
T ss_pred EECCC----CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 99873 456788887 67899996653 357999995 4789999999998764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=241.15 Aligned_cols=328 Identities=17% Similarity=0.158 Sum_probs=233.5
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC-------CeEEcCC-chHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE-------AGLFVPS-GTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~-------~~~~~~~-gt~a~~~~l~~ 72 (359)
..|||.++.+..+ .+.+.+++.+.... ...|+..++..++++.++++++.. ..+++++ +++++..++.+
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 109 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVT 109 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHH
Confidence 4689999876654 47788887764322 234666678899999999887521 2344454 56677777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++||+|++++|+|.... ..++..|++++.++.+. ++.+|++++++.++ .++++|+++++ +|||
T Consensus 110 l~-~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~--------~~~~~v~~~~P-~NPt 176 (386)
T PRK07550 110 LA-GAGDEVILPLPWYFNHK---MWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT--------PRTRAIALVTP-NNPT 176 (386)
T ss_pred hc-CCCCEEEEcCCCCcchH---HHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc--------ccCcEEEEeCC-CCCC
Confidence 76 59999999999976644 34678899999998753 45679999999998 67888888665 5799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh---cCccEE-EEeccccCCCcee--eEEecCHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV---QAADSA-SVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~-~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
|.+++.+++++|+++|++||++||+|++|..... ..+.....+. .+.+++ +.|+||.+|.|+. ||++++++++
T Consensus 177 G~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~ 255 (386)
T PRK07550 177 GVVYPPELLHELYDLARRHGIALILDETYRDFDS-GGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARI 255 (386)
T ss_pred CcccCHHHHHHHHHHHHHcCeEEEEeccchhhcc-CCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHH
Confidence 9999999999999999999999999999643221 1111111111 122344 4599999985542 8999999998
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHH-HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAA-LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+.+.......+.+.+.....++.. +..++++.++.++.+.++++.+.+.|++.+++.+. +.+++++|+.++. .+.+
T Consensus 256 ~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~g~~~~~~~~~~-~~~~ 332 (386)
T PRK07550 256 AEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWELL--ASGAYFAYVRHPF-PDRP 332 (386)
T ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC--CCceEEEEecCCC-CCCC
Confidence 888776655444443222222222 22234555545667788889999999887666542 4478889998864 1247
Q ss_pred HHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+++++| .++||.+.|+ +..++||+++ ..+++++++++++|.++
T Consensus 333 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 333 SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADVAGIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCHHHHHHHHHHHHhh
Confidence 78899987 6789999775 2468999996 46789999999999764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=239.51 Aligned_cols=337 Identities=15% Similarity=0.077 Sum_probs=224.5
Q ss_pred ccccccCCCC----CChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC-------CeEEcCCch-HHHHHH
Q 018243 4 RTVDLRSDTV----TKPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE-------AGLFVPSGT-MGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~----~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~-------~~~~~~~gt-~a~~~~ 69 (359)
.+++|..+++ ..|++.+.+++.+.... ...|+...+..++|+.++++++.. ..+++++|+ +++..+
T Consensus 33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~ 112 (433)
T PRK06855 33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKI 112 (433)
T ss_pred cccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHH
Confidence 3577766655 24446677777664432 235777788999999999998432 125555554 555555
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+ .++ .+||.|++++|+|.. +. .......|.+++.++.+ .++.+|+++|++.+++. ++++++++.+ ++
T Consensus 113 ~-~l~-~~Gd~Vlv~~P~Y~~-~~-~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~------~~~~~i~l~~-P~ 181 (433)
T PRK06855 113 Y-GLL-RREARVIGPSPAYST-HS-SAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN------PSIAGILLIN-PD 181 (433)
T ss_pred H-Hhc-CCCCeEEEeCCCCch-HH-HHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC------CCceEEEEEC-CC
Confidence 5 555 599999999999876 43 11123457777877654 34678999999999731 3578888855 56
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCcc-EEEEeccccCCCcee--eEEecC---
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAAD-SASVCLSKGLGAPVG--SVIVGS--- 220 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d-~~~~s~~K~~g~~~g--g~~~~~--- 220 (359)
||||.+++.+++++|+++|++||++||+||+|....+.. ...+...+..... +++.|+||.+++|+. ||++.+
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~ 261 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNAD 261 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCc
Confidence 799999999999999999999999999999964332211 1123333322223 444599999986654 888862
Q ss_pred --HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 221 --KEFIKKARRLRKTLGGGMRQVGVLCAAALVAL-----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
+.+.+.++............+.+.+.++...+ +.++++.++.+.++++.+.+.|++++++.+ .++.++.++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~~~w 340 (433)
T PRK06855 262 KDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAFYMT 340 (433)
T ss_pred hhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cCCCeeEEEe
Confidence 22233333232221111112334445555454 345555677788899999999988878765 3456788999
Q ss_pred EEeccch-------------------------HHHHHHHHHHH-HhcCceeccCCC-----cEEEEEeCCCCCHHHHHHH
Q 018243 294 FEITEDS-------------------------KLYAACLLKKL-EEHGVLVMPESS-----TRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 294 ~~~~~~~-------------------------~~~~~~~~~~l-~~~gi~~~~~~~-----~~lRi~~~~~~~~~~i~~~ 342 (359)
+.++... ..+..++...+ .++||.+.|+.. .++|++++ ..+++++++.
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~-~~~~~~i~~~ 419 (433)
T PRK06855 341 VVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLL-ERDEEKFEWI 419 (433)
T ss_pred eccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEEC-CCcHHHHHHH
Confidence 9997521 00244666554 889999988743 35999997 3689999999
Q ss_pred HHHHHHHHHHH
Q 018243 343 LSCFQKIYAGV 353 (359)
Q Consensus 343 ~~~l~~~~~~~ 353 (359)
+++|.++++++
T Consensus 420 ~~~l~~~~~~~ 430 (433)
T PRK06855 420 YQTLAEKIEEY 430 (433)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=241.90 Aligned_cols=314 Identities=14% Similarity=0.125 Sum_probs=214.8
Q ss_pred CccCCChHHHHHHHHHHHHhCCC-------CeEEcC-CchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCc
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKE-------AGLFVP-SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGV 103 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~-------~~~~~~-~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~ 103 (359)
..|+...+..+++++++++++.. ..++++ |+++++..++.+++..+||.|+++.|+|.... ..++..|.
T Consensus 109 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~---~~~~~~g~ 185 (481)
T PTZ00377 109 GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS---AAITLLGG 185 (481)
T ss_pred cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHH---HHHHHcCC
Confidence 45888888999999999998532 225444 55566666766666348999999999977644 34778888
Q ss_pred cceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccccc
Q 018243 104 HPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181 (359)
Q Consensus 104 ~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 181 (359)
+++.++.++ ++.+|+++|++.++..... ..+++++++.+ ++||||.+++.+++++|+++|++||++||+||+|..
T Consensus 186 ~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~--~~~~k~l~l~~-P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~ 262 (481)
T PTZ00377 186 KQVPYYLDEEKGWSLDQEELEEAYEQAVRN--GITPRALVVIN-PGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQE 262 (481)
T ss_pred EEEEEEeccccCCCCCHHHHHHHHHHHHhc--CCCeeEEEEEC-CCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHh
Confidence 999987653 4678999999998731000 02788888865 467999999999999999999999999999999643
Q ss_pred chhhh--cCchhHh----hhcC----ccEEEE-eccccC-CCcee--eEEec---CHHHHHHHHHHHHhhCCCcchhHHH
Q 018243 182 NAAVA--LGVPVRR----LVQA----ADSASV-CLSKGL-GAPVG--SVIVG---SKEFIKKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 182 ~~~~~--~~~~~~~----~~~~----~d~~~~-s~~K~~-g~~~g--g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (359)
..+.. ...+... +... ..++++ |+||.+ +.|+. ||+++ ++++++.+...... ..+. +...
T Consensus 263 l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~-~~~~--~~~~ 339 (481)
T PTZ00377 263 NIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI-NLCS--NVVG 339 (481)
T ss_pred hccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe-ecCC--ChHH
Confidence 22210 1112222 1111 125555 999974 64433 88775 89999988765532 2122 3334
Q ss_pred HHHHHHHHH----------HhHH---HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH---------
Q 018243 245 CAAALVALQ----------ENVL---VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL--------- 302 (359)
Q Consensus 245 ~~~~~~~l~----------~~~~---~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------- 302 (359)
+.++...++ .+.+ ..+..+.++++.+.+.|++++|+.+. .+.+++++|+.++.+.+.
T Consensus 340 Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~-~p~gg~fl~~~~~l~~~~~~~~~~~~~ 418 (481)
T PTZ00377 340 QLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ-PVEGAMYAFPRIELPEKAIQEAKERGL 418 (481)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEee-cCCeeEEEEeeccCchhhHHHHHhcCC
Confidence 444443331 1222 12334678889999999998888875 455788899776432111
Q ss_pred -HHHHHH-HHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 303 -YAACLL-KKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 303 -~~~~~~-~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
+...++ ..|.++||.++|++ ..++|+++. .+++++++++++|.++++++.++.
T Consensus 419 ~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~~~ 480 (481)
T PTZ00377 419 APDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMKKY 480 (481)
T ss_pred CcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 123344 44588999998763 247999995 778899999999999999887764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=241.86 Aligned_cols=345 Identities=16% Similarity=0.177 Sum_probs=231.5
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCC--C--CCccCCChHHHHHHHHHHHHhCCC-------CeEEc-CCchHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEV--D--DDVLMHDPTAFRLETEMAKVMGKE-------AGLFV-PSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~--~--~~~~~~~~~~~~l~~~la~~~~~~-------~~~~~-~~gt~a~~~~l 70 (359)
+..|+|..+...+|...+.++...... + ...|+.+.+..++++.+++++... ..+++ +|+++++..++
T Consensus 129 p~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~ 208 (534)
T PLN02231 129 PSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMM 208 (534)
T ss_pred CccCCCCCccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHH
Confidence 346788776677777555555432211 1 345888899999999999988432 12544 45556666777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++..+||.|+++.|+|.. +. ..+...|.+++.++.++ +|.+|+++|++.+++.... ..+++++++.+| +|
T Consensus 209 ~~l~~~~gd~Vli~~P~Y~~-y~--~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~--~~~~k~ivl~nP-~N 282 (534)
T PLN02231 209 QLLIRSEKDGILCPIPQYPL-YS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSK--GITVRALVVINP-GN 282 (534)
T ss_pred HHhccCCCCEEEEeCCCChh-HH--HHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhc--CCCeEEEEEeCC-CC
Confidence 77764479999999999765 44 34777888999987654 4789999999998742110 126888888555 66
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhhc-------CccEEEE-eccccC-CCcee--e
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLVQ-------AADSASV-CLSKGL-GAPVG--S 215 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~~-------~~d~~~~-s~~K~~-g~~~g--g 215 (359)
|||.+++.+++++|+++|++||++||+||+|....+.. ...++..+.. ...++++ |+||.+ |.|+. |
T Consensus 283 PTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiG 362 (534)
T PLN02231 283 PTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGG 362 (534)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceE
Confidence 99999999999999999999999999999964432210 1113333311 1235666 999976 54432 7
Q ss_pred EEec---CHHHHHHHHHHHHhhCCCcchhHHHHHHHHH--------HHHHhHH---HHhhhHHHHHHHHHHHHhcCCCce
Q 018243 216 VIVG---SKEFIKKARRLRKTLGGGMRQVGVLCAAALV--------ALQENVL---VMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 216 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~---~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
|++. ++++.+.+...... ..+.......++.... .++.+.+ ..++.+.++++.+.+.|++++|+.
T Consensus 363 y~~~~~~~~~l~~~l~k~~~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 363 YMEVTGFTSDVREQIYKVASV-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred EEEEecCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 7764 78888888765442 2222222222222211 2222222 245678889999999999988988
Q ss_pred EecCCccceEEEEEeccchH-HH---------HHHHHHHH-HhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHH
Q 018243 282 VDVDAVETNIVYFEITEDSK-LY---------AACLLKKL-EEHGVLVMPES-------STRVRIVVHHQISANDVHYTL 343 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~l-~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~ 343 (359)
+. ++.++.++|.++..+.. .+ ...++.+| .++||.++|+. ..++|+++ ..+++++++.+
T Consensus 442 ~~-~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~--~~~~e~l~eal 518 (534)
T PLN02231 442 CN-KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIV 518 (534)
T ss_pred ec-CCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe--CCCHHHHHHHH
Confidence 74 45688888855542111 11 22355656 68899998874 23599998 57899999999
Q ss_pred HHHHHHHHHHHhhc
Q 018243 344 SCFQKIYAGVCEEN 357 (359)
Q Consensus 344 ~~l~~~~~~~~~~~ 357 (359)
++|.++++++.++.
T Consensus 519 ~RL~~~~~~~~~~~ 532 (534)
T PLN02231 519 SRLTEFHKSFMDEF 532 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=239.40 Aligned_cols=315 Identities=20% Similarity=0.224 Sum_probs=226.9
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-e-EEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-G-LFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~-~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
..+|||.++.+. .++|.+.+++.+.......|+... ..++|+.++++++.+. . ++++|+++++..++..++ ++|+
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~-~~gd 96 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDPD-PAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL-EPGD 96 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence 357999877655 455889999988643334455434 4899999999999653 3 455555567767777776 5899
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|++++|+|.. +. ..+...|.+++.++.+.++.+|++++++.++ +++++|+++++ +||||..++.+++
T Consensus 97 ~v~~~~p~y~~-~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~~~~~ 164 (346)
T TIGR01141 97 AVLVPPPTYSM-YE--ISAKIHGAEVVKVPLDEDGQLDLEDILVAID--------DKPKLVFLCSP-NNPTGNLLSRSDI 164 (346)
T ss_pred EEEEcCCCHHH-HH--HHHHHcCCeEEEeccCCCCCCCHHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCCHHHH
Confidence 99999999654 43 3367789999999887778899999999876 68899998655 6699999998777
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EEEEeccccCCCce-e-eEEecCHHHHHHHHHHHHhhCC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
.++++.++ +++++|+|++|.. +...+..........+ ++..|+||++|.++ + ||++.++++.++++.....++
T Consensus 165 ~~l~~~~~-~~~~ii~D~~y~~--~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~- 240 (346)
T TIGR01141 165 EAVLERTP-EDALVVVDEAYGE--FSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAPFN- 240 (346)
T ss_pred HHHHHhCC-CCcEEEEECchhh--hcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCCCC-
Confidence 77777776 6999999999642 2111111111111234 44559999997653 2 889999999888765543322
Q ss_pred CcchhHHHHHHHHHHHHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
.+...+.++...++. ..+..++++.++++++++.|++++|+++. +..+.++|+.++. +.+++.++|.++
T Consensus 241 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~g~~~~~~~~~----~~~~~~~~L~~~ 311 (346)
T TIGR01141 241 ---LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY--PSDANFVLIRFPR----DADALFEALLEK 311 (346)
T ss_pred ---CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC--CCcCCEEEEecCC----CHHHHHHHHHHC
Confidence 233344444444432 34446677888899999999988888753 3467889988864 567899999999
Q ss_pred CceeccCC-----CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 315 GVLVMPES-----STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 315 gi~~~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
||.+.++. .+++|++++ ++++++++++.|+
T Consensus 312 gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 312 GIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 99998764 478999984 7899999998773
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=237.70 Aligned_cols=323 Identities=16% Similarity=0.171 Sum_probs=224.2
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CC---C-CeEE-cCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GK---E-AGLF-VPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~---~-~~~~-~~~gt~a~~~~l~ 71 (359)
..|||..+++..+. +.+.+++.+.... ...|+...+..++++++++++ +. + ..++ ++|+++++..++.
T Consensus 36 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~ 115 (394)
T PRK05942 36 DLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLAL 115 (394)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHH
Confidence 46899988776544 4455555443222 245776677889999999987 32 2 2355 4555667777777
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ .+||+|++++|+|..... .+...|.+++.++.+. ++.+|++++++.++ +++++|++++| +||
T Consensus 116 ~~~-~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~i~l~~P-~NP 182 (394)
T PRK05942 116 AYV-NPGDVVLVPSPAYPAHFR---GPLIAGAQIYPIILKPENDWLIDLSSIPEEVA--------QQAKILYFNYP-SNP 182 (394)
T ss_pred HhC-CCCCEEEEcCCCCcchHH---HHHHcCCEEEEeecCCccCCccCHHHHHHhcc--------ccceEEEEcCC-CCC
Confidence 776 599999999999876553 2567888988887653 35689999999887 78999999644 679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCcc--EEEEeccccCCCcee--eEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAAD--SASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d--~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
||.+++.+++++|.++|+++|++||+||+|....... ...+...+....+ +++.|+||.||.|+. ||++++++++
T Consensus 183 tG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~ 262 (394)
T PRK05942 183 TTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHII 262 (394)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHH
Confidence 9999999999999999999999999999965433211 1112222221122 445599999986543 8999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.++........+.+ ...+.++...+ +.+.++.++++.++++.+.+.|++. ++.+. ++..+.++|+.++..
T Consensus 263 ~~l~~~~~~~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~f~~~~~~~~-- 336 (394)
T PRK05942 263 QGLRTLKTNLDYGIF--SALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL-GWNIP-PTKATMYLWVPCPVG-- 336 (394)
T ss_pred HHHHHHHhhcccCCC--HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeeEEEEECCCC--
Confidence 998876654443332 23333333333 3455556777888889999999887 77764 344666899998752
Q ss_pred HHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 302 LYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 302 ~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.+..++..++ .++||.+.++ +..++|+++. .+.+.+.+.+++|.
T Consensus 337 ~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~ 387 (394)
T PRK05942 337 MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLK 387 (394)
T ss_pred CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHH
Confidence 3556676655 7899999765 2468999995 44555555555554
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=238.90 Aligned_cols=326 Identities=18% Similarity=0.155 Sum_probs=234.3
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCC---CCccCC-------ChHHHHHHHHHHHHhCCC--Ce-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVD---DDVLMH-------DPTAFRLETEMAKVMGKE--AG-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~-------~~~~~~l~~~la~~~~~~--~~-~~~~~gt~a~~~~l 70 (359)
+.++|++...+.+++.+.+++.+.... ...++. .....++++.+++++|.+ .. ++++|+|+++..++
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA 95 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence 468888888887778888888664321 111111 233577999999999984 23 56777778888888
Q ss_pred HHhh---hhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVHC---ETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~~---~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.++. .++|++|++++++|++.+... ..++..|++++.++.+.++.+|++++++.++ +++++|+++++
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~--------~~t~lv~i~~~- 166 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT--------PRTRILALGQM- 166 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhc--------cCceEEEEECc-
Confidence 7763 258999999999997753200 2356789999999887778889999999998 78999998654
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
+||||...| +++|.++|+++|+++++|++|+.+... .....+ ++|++++|+||.+| |.| |+++.++++.+
T Consensus 167 ~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~---~~~~~~--~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 167 SNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP---PDVQAL--DIDFYAFSGHKLYG-PTGIGVLYGKTELLE 237 (398)
T ss_pred cccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC---CChhhc--CCCEEEEecccccC-CCceEEEEEcHHHHh
Confidence 559999987 789999999999999999998654432 222232 68999999999777 556 89999988877
Q ss_pred HHHHHHH--------------------hh-CCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 226 KARRLRK--------------------TL-GGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 226 ~~~~~~~--------------------~~-~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
.+..... .+ .++... ....+...+++ ...+...++..+.++++.+.|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~--~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~ 315 (398)
T TIGR03392 238 AMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNI--AGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGF 315 (398)
T ss_pred hCCCeecCCceEeeccccccccCCChhhccCCCCCH--HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 6532110 00 011111 11222222232 223335566777889999999998898
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++... ...+++.+.++. .+.+++.+.|.++||.+.++. .+++|++++..++++|++++++.|++
T Consensus 316 ~~~~~-~~~~i~~~~~~~---~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~ 391 (398)
T TIGR03392 316 RSFRC-PGSSLLAFDFAG---VHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGA 391 (398)
T ss_pred EEeCC-CCCcEEEEEeCC---cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHH
Confidence 87533 345677777654 366789999999999996653 46899999999999999999999999
Q ss_pred HHHHH
Q 018243 349 IYAGV 353 (359)
Q Consensus 349 ~~~~~ 353 (359)
+++++
T Consensus 392 ~~~~~ 396 (398)
T TIGR03392 392 ALELL 396 (398)
T ss_pred HHHHh
Confidence 88764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=237.78 Aligned_cols=329 Identities=20% Similarity=0.177 Sum_probs=231.6
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHH----hCCC-----CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKV----MGKE-----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~----~~~~-----~~~~~~~gt~a~~~~l~ 71 (359)
+..+||..+.+..+. +.+.+++.+... ....|...++..++++.++++ +|.+ ..++++||++++..++.
T Consensus 24 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 103 (387)
T PRK07777 24 TGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVL 103 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHH
Confidence 456888887655333 445555554332 234577777888999998876 4543 24566677788888888
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
.++ .+||+|+++.|+|.... ..+...|.+++.++.++ ++.+|++++++.++ +++++|++++ ++|
T Consensus 104 ~~~-~~gd~vli~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~-p~N 170 (387)
T PRK07777 104 GLV-EPGDEVLLIEPYYDSYA---AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT--------PRTRALIVNS-PHN 170 (387)
T ss_pred Hhc-CCCCEEEEeCCCchhhH---HHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC--------cccEEEEEcC-CCC
Confidence 776 59999999999976644 33667788888886643 35689999999887 6788999865 567
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh--cCccEEEEeccccCCCcee--eEEecCHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV--QAADSASVCLSKGLGAPVG--SVIVGSKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~--~~~d~~~~s~~K~~g~~~g--g~~~~~~~~ 223 (359)
|||.+++.+++++|.++|+++++++|+|++|....+... ..+...+. .+.++++.|+||.||.|+. ||+++++++
T Consensus 171 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l 250 (387)
T PRK07777 171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPL 250 (387)
T ss_pred CCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHH
Confidence 999999999999999999999999999999754332111 11222221 1234556699999986543 899999999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
++.+...........+.. .+.++...+ +.+.+..++.+.++++.+.+.|++. ++++. ++..+.++|+.++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~ 326 (387)
T PRK07777 251 IAAVRAAKQYLTYVGGAP--FQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA-GFEVH-DSAGTYFLCADPRPLG 326 (387)
T ss_pred HHHHHHHHhhcccCCCCH--HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCcc-CCCcceEEEecccccC
Confidence 988876655433333222 222332333 3445556677888999999999997 87764 3446778888875311
Q ss_pred HHHHHHHHHHH-HhcCceeccCC---------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPES---------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+..+++++| +++||.+.|+. ..++|++++ .+++++++.+++|.++.
T Consensus 327 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 327 YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--KRDDTLDEAIRRLRALR 384 (387)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 12678899999 57899997653 347999995 57899999999997654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=237.51 Aligned_cols=330 Identities=15% Similarity=0.144 Sum_probs=234.2
Q ss_pred ccccccCCCCC-----ChHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHhCCC--------CeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT-----KPTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVMGKE--------AGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~-----~~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~~--------~~~~~~~gt~a~~~ 68 (359)
..|+|..+.+. .|.+.+.+++.+..... ..|+..++..++++.++++++.. ..++++|+++++..
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~ 111 (403)
T TIGR01265 32 PIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEI 111 (403)
T ss_pred CeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHH
Confidence 57889888763 45588888887654332 34666778899999999999852 23666777888888
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++.+++ .+|++|++++|+|... . ..+...|.+++.++.+ .++.+|++.+++.++ +++++++++++
T Consensus 112 ~~~~l~-~~gd~Vlv~~p~y~~~-~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~i~~p- 178 (403)
T TIGR01265 112 CIEALA-NPGANILVPRPGFPLY-D--TRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD--------EKTVAIVVINP- 178 (403)
T ss_pred HHHHhC-CCCCEEEEeCCCchhH-H--HHHHHcCCEEEEecCCcccCCccCHHHHHHHhC--------cCccEEEEecC-
Confidence 888887 5999999999997653 3 3367778888887653 356789999999887 67888888665
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--eEEecC-H
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGS-K 221 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~-~ 221 (359)
+||||.+++.+++++|.++|+++|+++|+|++|....+.. ...+...+.....++++ |+||.|+.|+- ||++++ +
T Consensus 179 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~ 258 (403)
T TIGR01265 179 SNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDP 258 (403)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCc
Confidence 5699999999999999999999999999999965332221 11233333323345555 99999877643 787763 2
Q ss_pred -H-----HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE
Q 018243 222 -E-----FIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI 291 (359)
Q Consensus 222 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 291 (359)
+ +.+.+...... ....+...+.++...++ .+.++.++++.++++.+.+.|+.++++.+. .+.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~~g~f 334 (403)
T TIGR01265 259 HGIFRDTVLQGLKNLLQR---ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP-KPEGAMY 334 (403)
T ss_pred hhhhHHHHHHHHHHHhhh---hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCceeE
Confidence 2 33333333221 11223344444444442 445556777888889999999988787753 3568999
Q ss_pred EEEEeccch---HHHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 292 VYFEITEDS---KLYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 292 ~~~~~~~~~---~~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+|++++... ..+..++.+.| .++||.+.|+. .+++||+++ .+++.+++.+++|.+++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 335 LMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCER 401 (403)
T ss_pred EEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 999986420 01466787886 78999998764 468999995 5688899999999888765
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=227.68 Aligned_cols=323 Identities=19% Similarity=0.179 Sum_probs=225.5
Q ss_pred ccCCCCCChH-HHHHHHHHcCCCC--CCcc----CCChHHHHHHHHHHHHhCCC----CeE-EcCCchHHHHHHHHHhhh
Q 018243 8 LRSDTVTKPT-EAMRAAMASAEVD--DDVL----MHDPTAFRLETEMAKVMGKE----AGL-FVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 8 ~~~~~~~~~~-~~~~~a~~~~~~~--~~~~----~~~~~~~~l~~~la~~~~~~----~~~-~~~~gt~a~~~~l~~~~~ 75 (359)
|..+.+..|. +-+.+++.+.... ...| |..+....|++.+++++|.. +.+ ++.++.+++..++.+++.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~ 115 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN 115 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC
Confidence 5555555544 5677777665443 2234 44445555555566655543 235 455556788889999994
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecC--------CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--------QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+||+|++.+|.|.+.+. ...+.|..++.++.. .++.+|.++++.++. ++|++|++ +++|
T Consensus 116 -~GDeVii~eP~fd~Y~~---~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t--------~kTk~Ii~-ntPh 182 (420)
T KOG0257|consen 116 -PGDEVIVFEPFFDCYIP---QVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT--------EKTKAIIL-NTPH 182 (420)
T ss_pred -CCCEEEEecCcchhhhh---HHhhcCCcceeeccccccccccCccccCChHHHHhhcc--------CCccEEEE-eCCC
Confidence 99999999999777553 488888899988554 568899999999999 89999999 5566
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc--CccEEEEeccccCCCcee--eEEecCHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKE 222 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~ 222 (359)
||||.+++.++|++|+++|++||+++|.|++|.+..+... +.....+.. ...+-+.|++|+||..++ ||+++++.
T Consensus 183 NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~ 262 (420)
T KOG0257|consen 183 NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKH 262 (420)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHH
Confidence 6999999999999999999999999999999766544322 223333321 122445599999998666 99999999
Q ss_pred HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 223 FIKKARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
+....+..........+.+.+.+.++..+.. .+.....+.++++++.|.+.|.++ |+++.. |.+++|+|
T Consensus 263 L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~-p~gayyl~ 340 (420)
T KOG0257|consen 263 LYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTG-PEGAYYLW 340 (420)
T ss_pred hhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCcccc-CCCceEEE
Confidence 9999887776655444333222222222221 233346777999999999999999 999854 56999999
Q ss_pred EEeccc------hHH----HHHHHHHHH-HhcCceeccCCCc-----------EEEEEeCCCCCHHHHHHHHHHHH
Q 018243 294 FEITED------SKL----YAACLLKKL-EEHGVLVMPESST-----------RVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 294 ~~~~~~------~~~----~~~~~~~~l-~~~gi~~~~~~~~-----------~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
..++.. ++. +...+..+| .+.|+.+.|.+.+ .+|+++ .-+++.++..++.|+
T Consensus 341 adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~--~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 341 ADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCF--CKADETLRKAIERLK 414 (420)
T ss_pred EeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHH--HhhHHHHHHHHHHHh
Confidence 998821 011 334567777 7888888776433 355565 456666666666665
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=236.04 Aligned_cols=335 Identities=18% Similarity=0.146 Sum_probs=232.9
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CC---CC-eEEcC-CchHHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GK---EA-GLFVP-SGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~---~~-~~~~~-~gt~a~~~~l~ 71 (359)
.+|||..+++..+ ++.+.+++.+.... ...|....+..++++.+++++ |. +. .++++ |+++++..++.
T Consensus 31 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~ 110 (405)
T PRK09148 31 DIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQ 110 (405)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHH
Confidence 5689998877543 46677776654322 235766677899999999987 33 12 35455 55566667777
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
.++ .+||.|++++|+|..... .+...|++++.++.+.++. +++++++.++... +++++|++++| |||||
T Consensus 111 ~l~-~~gd~Vl~~~P~y~~~~~---~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~-----~~~~~v~l~~P-~NPtG 179 (405)
T PRK09148 111 AIT-APGDVILCPNPSYPIHAF---GFIMAGGVIRSVPAEPDEE-FFPALERAVRHSI-----PKPIALIVNYP-SNPTA 179 (405)
T ss_pred Hhc-CCCCEEEEcCCCCcccHH---HHHhcCCEEEEEeCCCCCC-CccCHHHHHhhcc-----ccceEEEEeCC-CCCCC
Confidence 776 599999999999776543 3677898998887654432 3344555554211 57788888554 66999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EE-EEeccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|.++|++||++||+||+|....+... ..+...+....+ ++ +.|+||.+|.|+. ||+++++++++.
T Consensus 180 ~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~ 259 (405)
T PRK09148 180 YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAA 259 (405)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHH
Confidence 999999999999999999999999999654322110 112222221123 33 5599999996653 999999999999
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch-HH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS-KL 302 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 302 (359)
+.........+.+ ...+.++...+ +.+.+..++.+.++++.+.+.|++. ++.+. .+..++++|+.++... ..
T Consensus 260 l~~~~~~~~~~~~--~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~f~~~~l~~~~~~~ 335 (405)
T PRK09148 260 LTRVKSYLDYGAF--TPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-GWDIP-PPAASMFAWAPIPEAFRHL 335 (405)
T ss_pred HHHHHHHhccCCC--hHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCeeEEEEEECCCccCCC
Confidence 8877665444432 23333333344 3445556677888999999999987 77653 3568889999987521 12
Q ss_pred HHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 303 YAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 303 ~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+..++.+.| .++||.+.|+. ..++||++. .+.+++++.+++|.+++++..+
T Consensus 336 ~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 336 GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLSSADE 393 (405)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHHH
Confidence 356788877 68999998752 468999995 6889999999999999987754
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=237.50 Aligned_cols=329 Identities=21% Similarity=0.214 Sum_probs=233.6
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhC-----CC--CeEEcCCchHHHHHHHHHhhh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMG-----KE--AGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~-----~~--~~~~~~~gt~a~~~~l~~~~~ 75 (359)
++++|+++.+.. +.+.+.+++.+.......|+...+..++++.++++++ .+ ..++++||++++..++..++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~- 109 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC- 109 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc-
Confidence 468898887754 3478888887644334457777788999999999984 22 23666677778888877776
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecCC-C-CC-CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-D-GT-MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-~~-~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++|++|++++|+|.. +. ..++..|.+++.++.+. + +. .+++++++.++ +++++|++.++ +||||.
T Consensus 110 ~~gd~Vl~~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~--------~~~~~v~i~~p-~NPtG~ 177 (397)
T PRK07568 110 DPGDEILVPEPFYAN-YN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT--------PKTKAILISNP-GNPTGV 177 (397)
T ss_pred CCCCEEEEecCCCcc-HH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC--------ccceEEEEECC-CCCCCc
Confidence 599999999998654 43 34677888988887642 2 23 35789999887 67889988665 579999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhc-CccEEE-EeccccCCCcee--eEEec-CHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQ-AADSAS-VCLSKGLGAPVG--SVIVG-SKEFI 224 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~-~~d~~~-~s~~K~~g~~~g--g~~~~-~~~~~ 224 (359)
+++.+++++|+++|+++|+++|+|++|.... +.+. +...+.. ...+++ .|+||.||+|+. ||+++ +++++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~--~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~ 255 (397)
T PRK07568 178 VYTKEELEMLAEIAKKHDLFLISDEVYREFV--YDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELI 255 (397)
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeccchhcc--cCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHH
Confidence 9999999999999999999999999964322 2222 2223321 223444 499999986433 78777 57788
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.+...... ..+. +.+.+.++...+ +.+.++.++.+.++++.+.+.|++++++.+. .+.++.++|++++..
T Consensus 256 ~~~~~~~~~-~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~-- 329 (397)
T PRK07568 256 AAAMKLCQA-RLSP--PTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPVD-- 329 (397)
T ss_pred HHHHHHhhc-cCCC--CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCcceEEEEecCCC--
Confidence 776544332 1222 333334444444 3445556667888899999999988777664 345677889998752
Q ss_pred HHHHHHHHHHHh------cCceeccCC---------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 302 LYAACLLKKLEE------HGVLVMPES---------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 302 ~~~~~~~~~l~~------~gi~~~~~~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+..++.++|.+ +||.+.|+. .+++|++++ .+++++++++++|.++++++..+
T Consensus 330 -~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~~~~~ 396 (397)
T PRK07568 330 -DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALEKYNKR 396 (397)
T ss_pred -CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHhhcc
Confidence 56788888843 699987642 358999995 57899999999999999887643
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=220.09 Aligned_cols=318 Identities=20% Similarity=0.194 Sum_probs=231.4
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CCC---Ce-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GKE---AG-LFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~---~~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
.|++++|+.+.. .+..||++-..+++-+++++|+ +.. .. +++++-..++..++.++. ++||.|++..|.|
T Consensus 40 pp~i~~Al~~rv-dhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd~Vvi~tPvY 117 (388)
T COG1168 40 PPEIIEALRERV-DHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGDGVVIQTPVY 117 (388)
T ss_pred CHHHHHHHHHHH-hcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCCeeEecCCCc
Confidence 389999998854 4445665544455666666554 332 12 455566677888888888 6999999999999
Q ss_pred ceeeccccccccCCccceeeecC-C--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 89 IHIYENGGISTIGGVHPRTVKNN-Q--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~v~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
++.+. .....|-+++..|.- + .+.+|.++|++.+.+ .++++++++||+| |||.+++.++|.+|.++
T Consensus 118 ~PF~~---~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-------~~vkl~iLCnPHN-P~Grvwt~eeL~~i~el 186 (388)
T COG1168 118 PPFYN---AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD-------ERVKLFILCNPHN-PTGRVWTKEELRKIAEL 186 (388)
T ss_pred hHHHH---HHhhcCcEEEeccccccCCcEEecHHHHHHHHhc-------CCccEEEEeCCCC-CCCccccHHHHHHHHHH
Confidence 99886 366777788877554 3 356799999999996 6678999977666 99999999999999999
Q ss_pred HHHcCcEEEEecccccchhhh-cCchhHhhhc-Ccc-EE-EEeccccCCCcee---eEEecCHHHHHHH-HHHHHhhCCC
Q 018243 166 AKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ-AAD-SA-SVCLSKGLGAPVG---SVIVGSKEFIKKA-RRLRKTLGGG 237 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~-~~d-~~-~~s~~K~~g~~~g---g~~~~~~~~~~~~-~~~~~~~~~~ 237 (359)
|.+||+.||.||.|+-..+.. .+.+...+.. .+| .+ ..|.||+|..++- -+++.++++..++ +++.......
T Consensus 187 c~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~ 266 (388)
T COG1168 187 CLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHG 266 (388)
T ss_pred HHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCC
Confidence 999999999999987655542 2333333321 233 34 4489999976422 4566787775544 4444443333
Q ss_pred cchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccchHHHHHHHHHHH-H
Q 018243 238 MRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-E 312 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 312 (359)
. +.+...+...++ +.+++..++.+..|.+++++.|.+ +|++++.. |.+++.+|+.+.. .+.+..++.+.| .
T Consensus 267 ~--n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~-p~gTYL~WLD~r~-l~l~d~~l~~~ll~ 342 (388)
T COG1168 267 P--SALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTE-PQGTYLAWLDCRE-LGLDDSELAEFLLE 342 (388)
T ss_pred C--chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec-CCCceeeeeeccc-cCCChHHHHHHHHH
Confidence 4 333334445555 456666777788999999999998 58999854 5678889999987 456777888888 7
Q ss_pred hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 313 ~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+|.+.+| +.+++|+.+ .++.+-+++.+++|+.++++.
T Consensus 343 ~akVal~~G~~FG~~g~gf~RlN~--acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 343 EAKVALSPGSTFGEEGSGFVRLNF--ACPRAILEEALERLKRALKKR 387 (388)
T ss_pred hhcEeccCCCccCcCCCceEEEec--CCCHHHHHHHHHHHHHHHhcc
Confidence 778877554 567899999 799999999999999888754
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=239.21 Aligned_cols=330 Identities=18% Similarity=0.204 Sum_probs=238.5
Q ss_pred cccccccCCCCC--ChHHHHHHHHHcCCCCC--------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVT--KPTEAMRAAMASAEVDD--------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~--~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
...++|.|+++. .++|++.+++.+..... ..|+..+...++++.+++++|.+..+++++|++|+..++..
T Consensus 46 ~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~ 125 (407)
T PRK09064 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLST 125 (407)
T ss_pred ceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHH
Confidence 346899998775 33588988887643221 12445778899999999999988889999999999999888
Q ss_pred hhh-hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+.. .+++.|+.+...|.+... + ....+.++..++.+ |++++++.++... .+++++|+++++.+ ++|
T Consensus 126 l~~~~~~~~i~~~~~~h~s~~~-~--~~~~~~~~~~~~~~-----d~~~le~~l~~~~----~~~~~~v~~~~v~s-~~G 192 (407)
T PRK09064 126 LAKLIPDCVIFSDELNHASMIE-G--IRRSRCEKHIFRHN-----DVAHLEELLAAAD----PDRPKLIAFESVYS-MDG 192 (407)
T ss_pred HhCCCCCCEEEEeCcchHHHHH-H--HHHcCCcEEEECCC-----CHHHHHHHHHhcc----CCCCeEEEEeCCCC-CCc
Confidence 763 256656666667776654 3 45566666656543 8888888887321 03578999977666 899
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
.+.+ +++|.++|++||+++|+||+|++|.++..+...... ....|+++.|++|.||. .||++++++++++.++
T Consensus 193 ~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~~~~~~~~~~~l~ 268 (407)
T PRK09064 193 DIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV-MGGYIAGSAALVDAVR 268 (407)
T ss_pred cccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc-cCceEecCHHHHHHHH
Confidence 9887 899999999999999999999766544333332222 12457777899999985 5688889999988876
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHHhHH--HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQENVL--VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
.....+..+...++..++++..+++...+ ..+++..++++++.+.|+++ |+++. +..++++++.++.. ..+.+
T Consensus 269 ~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~iv~i~~~~~--~~~~~ 343 (407)
T PRK09064 269 SYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIPVM--PNESHIVPVMVGDP--EKCKK 343 (407)
T ss_pred HhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCCEEEEEeCCH--HHHHH
Confidence 55443332333445555556666643322 23567788899999999997 88764 23577777777541 36778
Q ss_pred HHHHHH-hcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLE-EHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 307 ~~~~l~-~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.++|. ++||.+.+. +..++|++++..++++|++++++.|+++++++.
T Consensus 344 l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 344 ASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred HHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999884 679998432 346799999999999999999999999987764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=236.95 Aligned_cols=321 Identities=21% Similarity=0.244 Sum_probs=230.9
Q ss_pred ccccccCCCCCCh--HHHHHHHHHcCCCC-C-------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP--TEAMRAAMASAEVD-D-------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~--~~~~~~a~~~~~~~-~-------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++++.++ +|++++++.+.... . ..++..+...++++.++++++.+..+++++|++++..++..+
T Consensus 17 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~ 96 (360)
T TIGR00858 17 RLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISAL 96 (360)
T ss_pred eEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHh
Confidence 5799999876443 37888888764322 1 113445677889999999999888899999999999887777
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++||.|++++++|..... + ....|.+++.++. +|++.+++.+++... .++++|++.+ .+|+||..
T Consensus 97 ~-~~gd~v~~~~~~~~~~~~-~--~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~----~~~~~v~~~~-~~~~~G~~ 162 (360)
T TIGR00858 97 V-GKGDLILSDALNHASLID-G--CRLSGARVRRYRH-----NDVEHLERLLEKNRG----ERRKLIVTDG-VFSMDGDI 162 (360)
T ss_pred C-CCCCEEEEEccccHHHHH-H--HHhcCCceEEecC-----CCHHHHHHHHHHccc----CCCeEEEEeC-CccCCCCC
Confidence 6 599999999999887664 2 6677888877753 488999999874100 2467777755 45599987
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
.+ +++|.++|+++|+++|+||+|..+.....+.+..... .+.++++.|+||+|++ .|||+++++++.+.+..
T Consensus 163 ~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~gG~~~~~~~~~~~~~~ 238 (360)
T TIGR00858 163 AP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YGAYVAGSQALIDYLIN 238 (360)
T ss_pred cC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cCcEEEcCHHHHHHHHH
Confidence 66 8999999999999999999987654432222222211 2456777799999986 55888899988887754
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+...++...+++..+++.. .+..+++..++++++.+.|+++ ++++. +..++++|+.++. ..+..++
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~~~--~~~~~~~ 313 (360)
T TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL-GFTLM--PSCTPIVPVIIGD--NASALAL 313 (360)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCCEEEEEeCC--HHHHHHH
Confidence 43322222222334444444555422 2336677889999999999997 77664 3467889988864 2467789
Q ss_pred HHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 308 ~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.++|.++||.+.+. +..++|++++..++++++++++++|+
T Consensus 314 ~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 314 AEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 99999999999542 34589999988889999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=237.66 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=233.8
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCC------ccC----CChHHHHHHHHHHHHhCC-CC-e-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDD------VLM----HDPTAFRLETEMAKVMGK-EA-G-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~------~~~----~~~~~~~l~~~la~~~~~-~~-~-~~~~~gt~a~~~~l 70 (359)
+.++|++...+.+++.+.+++.+...... .+. ......++++.+++++|. +. . ++++|+|+++..++
T Consensus 19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~ 98 (401)
T PRK10874 19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA 98 (401)
T ss_pred ceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence 46888888888777788888865432211 110 123457889999999998 33 3 55666677777777
Q ss_pred HHhh---hhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVHC---ETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~~---~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.++. .++|++|+++++.|++.+... ..++..|++++.++.+.++.+|++++++.++ +++++|+++++
T Consensus 99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--------~~t~lv~i~~~- 169 (401)
T PRK10874 99 QSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELIT--------PRTRILALGQM- 169 (401)
T ss_pred HHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcC--------cCcEEEEEeCC-
Confidence 7763 258999999999997753200 2356779999999887788899999999998 78999999665
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
+||||...| +++|.++|+++|+++|+|++|+.+... .....+ ++|++++|+||.+| |.| |+++.++++.+
T Consensus 170 ~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~---~~~~~~--~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~ 240 (401)
T PRK10874 170 SNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP---ADVQAL--DIDFYAFSGHKLYG-PTGIGVLYGKSELLE 240 (401)
T ss_pred cccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc---CCchhc--CCCEEEEecccccC-CCccEEEEEchHHHh
Confidence 459999987 789999999999999999998665442 222233 68999999999776 566 99999988877
Q ss_pred HHHHHHH--------------------hh-CCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 226 KARRLRK--------------------TL-GGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 226 ~~~~~~~--------------------~~-~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
.+..... .+ .++. +.....+...+++ ...+...++..+.++++.+.|+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~--~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~ 318 (401)
T PRK10874 241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTP--NVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGF 318 (401)
T ss_pred cCCCeecCCcceEeeccCccCCCCChhhccCCCc--CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 6532210 00 0111 1112222223332 222334556667789999999998899
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++..+ ...+++++.++. .+.+++.+.|.++||.+.++. .+++|++++..++++|+++++++|++
T Consensus 319 ~~~~~-~~~~i~~~~~~~---~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~ 394 (401)
T PRK10874 319 RSFRC-QDSSLLAFDFAG---VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDR 394 (401)
T ss_pred EEeCC-CCCcEEEEEECC---cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHH
Confidence 87543 356677777764 356789999989999986643 46899999999999999999999999
Q ss_pred HHHHH
Q 018243 349 IYAGV 353 (359)
Q Consensus 349 ~~~~~ 353 (359)
+++++
T Consensus 395 ~~~~~ 399 (401)
T PRK10874 395 ALELL 399 (401)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=235.35 Aligned_cols=314 Identities=20% Similarity=0.230 Sum_probs=226.8
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcC
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRG 78 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g 78 (359)
..|+|+.+.+. +|++.+++++.+.... ...|.. +...++++.++++++.+. .+++++|++..+..+..++..+|
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~g 105 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPG 105 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCC
Confidence 57889777555 4568999998875432 234554 567899999999999753 47777777655554444433699
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
|+|++++|+|.. +. ..++..|++++.++.++++.+|++++++.+++ .++++|++++ ++||||.+++.++
T Consensus 106 d~vlv~~P~y~~-~~--~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~-------~~~~~v~l~~-p~NPtG~~~~~~~ 174 (356)
T PRK04870 106 ATVLAPEPGFVM-YR--MSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE-------HRPALVFLAY-PNNPTGNLFDDAD 174 (356)
T ss_pred CEEEECCCCHHH-HH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc-------CCCCEEEEcC-CCCCCCCCCCHHH
Confidence 999999999776 44 34788999999998887788999999999974 5789999955 5779999999999
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEE-EeccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
+++|+++| ++++|+||+|.. +.... ....+.....+++ .|+|| ++.|+. ||+++++++++.++.....+
T Consensus 175 ~~~i~~~~---~~~ii~De~y~~--~~~~~-~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~~- 246 (356)
T PRK04870 175 VERIIEAA---PGLVVVDEAYQP--FAGDS-WLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPY- 246 (356)
T ss_pred HHHHHHHC---CCEEEEECCchh--hcCcc-hHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCCC-
Confidence 99998888 789999999642 22111 1112222223444 49999 776543 89999999998877654322
Q ss_pred CCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+. +...+.++...++ ...++.++++.++++.+.+.|++++++.+. +..++++|+.++. ..++.+.|.+
T Consensus 247 -~~--~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~l~~ 316 (356)
T PRK04870 247 -NV--NVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTVF--PSAANFILVRVPD-----AAAVFDGLKT 316 (356)
T ss_pred -cC--CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECCC-----HHHHHHHHHH
Confidence 22 2233333433442 234446677788899999999998888653 4577899998762 4578888999
Q ss_pred cCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 314 ~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+||.+.++. .+++|++++ +.++.++++++|++++
T Consensus 317 ~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 317 RGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred CCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 999996642 458999994 6899999999998753
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=237.67 Aligned_cols=320 Identities=21% Similarity=0.230 Sum_probs=228.7
Q ss_pred ccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHH-HHHHHhhhhcCCe
Q 018243 4 RTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNL-ISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~-~~l~~~~~~~g~~ 80 (359)
..+||.++ +..+|+|.+.+++.+.......|... ...++++.++++++.+. .+++++|++.++ .++..++ ++|+.
T Consensus 33 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~ 110 (367)
T PRK02731 33 DIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG-SGFELKAALAEKFGVDPERIILGNGSDEILELLARAYL-GPGDE 110 (367)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCCCE
Confidence 46899987 45566788888887754333445443 34789999999999864 477777766554 4445555 68999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|++++|+|.. +. ..+...|.+++.++. .++.+|++++++.++ +++++|++++ ++||||.+++.+++.
T Consensus 111 vl~~~p~y~~-~~--~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~--------~~~~~v~l~~-p~nptG~~~~~~~l~ 177 (367)
T PRK02731 111 VIYSEHGFAV-YP--IAAQAVGAKPVEVPA-KDYGHDLDAMLAAVT--------PRTRLVFIAN-PNNPTGTYLPAEEVE 177 (367)
T ss_pred EEEecCCHHH-HH--HHHHHcCCeEEEecc-cCCCCCHHHHHHHhC--------CCCcEEEEeC-CCCCCCcCCCHHHHH
Confidence 9999999754 43 236678889998876 457789999999997 6789999865 556999999988888
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCccEEE-EeccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
++++.++ +|+++|+|++|........ ......+....++++ .|+||.+|.++. ||+++++++++.++.....++
T Consensus 178 ~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~~~- 255 (367)
T PRK02731 178 RFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPFN- 255 (367)
T ss_pred HHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCCCC-
Confidence 8777764 5999999999754332111 111211112234444 499999986543 899999999988776543322
Q ss_pred CcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
. +...+.++...++ .+.++.++.+.++.+.+.+.|++. |+.+. +..++++|+.++.. .+..++.++|.++
T Consensus 256 -~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~g~~~~i~~~~~--~~~~~~~~~L~~~ 327 (367)
T PRK02731 256 -V--NSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYI--PSVGNFILVDFDDG--KDAAEAYQALLKR 327 (367)
T ss_pred -C--CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC--CCCceEEEEECCCC--CCHHHHHHHHHHC
Confidence 2 3344445554443 344445666777888999999988 87764 34689999998542 4678999999999
Q ss_pred CceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 315 gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
||.+.++. .+++|++++ +.++++.++++|+++++
T Consensus 328 gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 328 GVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred CEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 99997763 457999984 68899999999998764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=235.08 Aligned_cols=314 Identities=19% Similarity=0.154 Sum_probs=225.7
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-E-EcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-L-FVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~-~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
+..++|+.+.+. +|+|.+.+++.+.......|+.. ...++++.+++++|.+.. + +++|+++++..++..++ ++||
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~-~~gd 120 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYDLE-LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT-SPTA 120 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc-CCCC
Confidence 456888887664 45688888887654333346544 388999999999987643 4 45555667777777776 5999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|++++|+|..... .++..|.+++.++.+.++.+|++++++. . ++++++++++ +|||||.+++.+++
T Consensus 121 ~Vli~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~--------~~~~~v~l~n-P~NPTG~~~~~~~l 187 (370)
T PRK09105 121 GLVTADPTYEAGWR---AADAQGAPVAKVPLRADGAHDVKAMLAA-D--------PNAGLIYICN-PNNPTGTVTPRADI 187 (370)
T ss_pred EEEEeCCChHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHhc-C--------CCCCEEEEeC-CCCCCCcCcCHHHH
Confidence 99999999776543 4778899999998777788899998865 3 4678888855 56799999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
+++.+.+ ++++++|+||+|... .. ..+...+. ...+++++ |+||.||.++. ||+++++++++.+... . .
T Consensus 188 ~~l~~~~-~~~~~lIvDEaY~~f--~~-~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~--~ 260 (370)
T PRK09105 188 EWLLANK-PAGSVLLVDEAYIHF--SD-APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-G--H 260 (370)
T ss_pred HHHHHhC-CCCcEEEEECchHHh--cc-CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-C--C
Confidence 9998875 459999999997432 11 22223332 23456665 99999987653 8999999999887654 1 1
Q ss_pred CCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+..+...+.++...+ ..+.+..++++.++++++.+.|+++ ++++. +..++++++.++. +..++.+.|.+
T Consensus 261 --~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~~f~~~~~~~----~~~~l~~~L~~ 331 (370)
T PRK09105 261 --NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKCT--PSQANCFMVDVKR----PAKAVADAMAK 331 (370)
T ss_pred --CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcC--CCCCcEEEEeCCC----CHHHHHHHHHH
Confidence 112333344444444 3445556677888899999999997 88764 2356676776653 56789999988
Q ss_pred cCceecc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMP---ESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 314 ~gi~~~~---~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+||.+.. ...+++|+++. +++++++++++|++++
T Consensus 332 ~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 332 QGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8998831 23578999984 5788999999998765
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=235.52 Aligned_cols=332 Identities=16% Similarity=0.123 Sum_probs=234.1
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh----CCCC---eEEcCC-chHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM----GKEA---GLFVPS-GTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~~~~---~~~~~~-gt~a~~~~l~~~ 73 (359)
..+||..+.+..+ ++.+.+++.+... ....|....+..++++.+++++ |.+. .+++++ +++|+..++..+
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~ 113 (402)
T PRK06107 34 SIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT 113 (402)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh
Confidence 4588888877654 3777777776443 2334666667778888777765 4432 255555 567777777766
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++||.|++++|+|..... .....+..++.++.+ .++.+|++++++.++ +++++|+++++ +||||
T Consensus 114 ~-~~gd~vl~~~p~y~~y~~---~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--------~~~~~v~l~~p-~NPtG 180 (402)
T PRK06107 114 L-EAGDEVIIPAPYWVSYPD---MVLANDGTPVIVACPEEQGFKLTPEALEAAIT--------PRTRWLILNAP-SNPTG 180 (402)
T ss_pred c-CCCCEEEEecCCCcCHHH---HHHHcCCEEEEecCCcccCCCCCHHHHHhhcC--------cCceEEEEECC-CCCCC
Confidence 6 599999999998665432 245556677777654 345689999999887 67888888655 66999
Q ss_pred eecChhhHHHHHHHHHHc-CcEEEEecccccchhhh-cCchhHhhhcC--ccEEEE-eccccCCCcee--eEEecCHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKH-GLKLHIDGARIFNAAVA-LGVPVRRLVQA--ADSASV-CLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~-~~~~~~~~~~~--~d~~~~-s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
.+++.+++++++++|+++ ++++|+|++|....+.. ...++..+... ..++++ |+||.||.|+. ||++++++++
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~ 260 (402)
T PRK06107 181 AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLI 260 (402)
T ss_pred cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHH
Confidence 999999999999999998 99999999975322211 11222222111 235544 99999986554 9999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEecc---
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE--- 298 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~--- 298 (359)
+.+.......+.+. +.+.+.++...+ +.+.+..++.+.++++.+.+.|++++|+++. ++..+.++|+.++.
T Consensus 261 ~~~~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~~~ 337 (402)
T PRK06107 261 AAINKLQSQSSSCP--SSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGLIG 337 (402)
T ss_pred HHHHHHHHhcccCC--ChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccccc
Confidence 99887776555444 444445554444 2345556677888899999999887787764 45678889988742
Q ss_pred ---chH---HHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 299 ---DSK---LYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 299 ---~~~---~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+ .+..++.+.| .++||.+.|+. .+++|++++ .+++++++++++|.+.++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 338 KTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAAL 401 (402)
T ss_pred cccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhc
Confidence 011 1455677666 78999998874 357999996 57999999999999988765
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=237.37 Aligned_cols=316 Identities=19% Similarity=0.192 Sum_probs=225.9
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~~ 80 (359)
..+||.++.+. +|+|.+.+++.+.... ..|.+..+..++++.++++++.+. .+++++|+ +++..++.+++ ++||.
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~ 107 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-LALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL-NPGTN 107 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh-CCCCE
Confidence 45889887554 4678899998775433 234455678999999999998754 35555554 55555555665 59999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|++++|+|..... .+...|.+++.++.+ ++.+|++++++.++ +++++++++++ +||||.+++.+++.
T Consensus 108 v~~~~p~y~~~~~---~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~~~~l~ 174 (359)
T PRK03158 108 TVMAEPTFSQYRH---NAIIEGAEVREVPLK-DGGHDLEAMLKAID--------EQTKIVWICNP-NNPTGTYVNHEELL 174 (359)
T ss_pred EEEcCCCHHHHHH---HHHHcCCeEEEEecC-CCCcCHHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCCHHHHH
Confidence 9999999776433 366778899998876 67789999998887 67889988665 66999999988777
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCcc-EEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAAD-SASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d-~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
++++.++ +|++||+||+|..........+..... .... +++.|+||.||.++- ||+++++++++.+......+
T Consensus 175 ~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~~-- 251 (359)
T PRK03158 175 SFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPF-- 251 (359)
T ss_pred HHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCCC--
Confidence 7777663 699999999974432211111111111 1222 444599999986543 89999999998887654432
Q ss_pred CcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
..+.+.+.++...++ .+.++.++...++++.+.+.|++. ++.+. +..++++|+.++. +..++.+.|.++
T Consensus 252 --~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~g~~i~~~~~~----~~~~~~~~l~~~ 322 (359)
T PRK03158 252 --NTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFYY--PSQTNFIFVDTGR----DANELFEALLKK 322 (359)
T ss_pred --CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC--CCcCcEEEEECCC----CHHHHHHHHHHC
Confidence 234455555555553 334445556677788888899888 77764 3467899988753 567899999889
Q ss_pred CceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 315 GVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 315 gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
||.+.++ .++++||+++ +.+++++++++|+++
T Consensus 323 gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 323 GYIVRSGAALGFPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred CeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 9999885 3568999984 789999999999875
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=237.27 Aligned_cols=329 Identities=19% Similarity=0.230 Sum_probs=239.3
Q ss_pred cccccccCCCCCCh--HHHHHHHHHcCCCCCC--------ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP--TEAMRAAMASAEVDDD--------VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+.++|.|+++.+. +|++++++.+...... .++..+...++++.+++++|.+.+++++||++|+..++..
T Consensus 45 ~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~ 124 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALST 124 (406)
T ss_pred ccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHH
Confidence 35689999988766 4889988887543211 1334567799999999999998899999999999999997
Q ss_pred hhhh-cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCET-RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~-~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+... +++.|+.+...|.+... + ....|.+++.++.+ |++.+++.++.... +++++|+++++.+ ++|
T Consensus 125 l~~~~~g~~I~~~~~~H~s~~~-~--~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~----~~~~~v~~~~v~~-~~G 191 (406)
T PRK13393 125 LGSRLPGCVILSDELNHASMIE-G--IRHSRAEKRIFRHN-----DPADLERKLSDLDP----HRPKLVAFESVYS-MDG 191 (406)
T ss_pred hhcCCCCCEEEEccchhHHHHH-H--HHHcCCeEEEeCCC-----CHHHHHHHHHhccC----CCCEEEEEcCCCC-CCC
Confidence 6532 67778888889888775 2 45567676666654 78888887763210 3578888877665 899
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
.+.| +++|.++|+++|+++|+|++|+.|.++..|..... +....|++..|++|.+|. .|||+++++++.+.++
T Consensus 192 ~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~~~~~~l~ 267 (406)
T PRK13393 192 DIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSAALCDFIR 267 (406)
T ss_pred chhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCHHHHHHHH
Confidence 9988 89999999999999999999986665444432221 222346777799999996 5688889999888876
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHHhHH--HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQENVL--VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
.....+..+...++..++++..+++...+ ..+.+..++.+++.+.|+++ ++++. +..++++.+.+.. ..+..+
T Consensus 268 ~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~i~~v~~~~--~~~~~~ 342 (406)
T PRK13393 268 SFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-GIPHL--PNPSHIVPVMVGD--PVLCKQ 342 (406)
T ss_pred HhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCCCCeEEEEeCC--HHHHHH
Confidence 55443323333445555566666643321 23455677889999999987 77654 3467777766543 135678
Q ss_pred HHHHHHh-cCceecc-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEE-HGVLVMP-------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l~~-~gi~~~~-------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+.|.+ +||.+.+ .+...+|++++..++++|+++++++|+++++++
T Consensus 343 l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 343 ISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred HHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999965 6999843 244689999999999999999999999988765
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=237.43 Aligned_cols=337 Identities=13% Similarity=0.092 Sum_probs=228.4
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC-------------CCCccCCChHHHHHHHHHHHHhCC--------C-CeEEcCC
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV-------------DDDVLMHDPTAFRLETEMAKVMGK--------E-AGLFVPS 61 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~l~~~la~~~~~--------~-~~~~~~~ 61 (359)
.+|+|...-+..+.+.+.+.+..... ....|+...+..+|+++++++++. + ..+++++
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~ 118 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTA 118 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEcc
Confidence 46777777766666666666655311 112366667888999999999852 2 1266666
Q ss_pred chH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccc-cCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 62 GTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGIST-IGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 62 gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
|++ ++..++.+++ .+||.|++++|+|..... .+. ..|++++.++.+ +++.+|++.+++.+++.... ..++
T Consensus 119 Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~---~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~--~~~~ 192 (468)
T PLN02450 119 GATSANETLMFCLA-EPGDAFLLPTPYYPGFDR---DLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKL--NLKV 192 (468)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCCchHH---HHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhc--CCCe
Confidence 655 5555555555 699999999999766443 244 578899988764 45677889999888631000 1378
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc---------CccEEEE-ecc
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ---------AADSASV-CLS 206 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~---------~~d~~~~-s~~ 206 (359)
++|++++ ++||||.+++.+++++|+++|++||++||+||+|....+.. ...+...... ...++++ |+|
T Consensus 193 k~v~l~n-P~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~S 271 (468)
T PLN02450 193 KGVLITN-PSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLS 271 (468)
T ss_pred eEEEEec-CCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEecc
Confidence 8999865 56799999999999999999999999999999975322211 1112222210 1224444 999
Q ss_pred ccCCCcee--eEEecCH-HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHHHhcC
Q 018243 207 KGLGAPVG--SVIVGSK-EFIKKARRLRKTLGGGMRQVGVLCAAALVALQ------ENVLVMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 207 K~~g~~~g--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~l~~~l~~~ 277 (359)
|.||.|+- ||+++++ .+.+.+...... + .. +.+.+.++...++ .++++.++++.++++.+.+.|+++
T Consensus 272 K~~~l~GlRiG~li~~~~~l~~~~~~~~~~-~-~~--s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~ 347 (468)
T PLN02450 272 KDLGLPGFRVGAIYSNDEMVVSAATKMSSF-G-LV--SSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA 347 (468)
T ss_pred ccCCCCCccEEEEEECCHHHHHHHHHHhhc-C-CC--CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99986543 8888864 455555444322 1 12 3344444444442 234556777888999999999998
Q ss_pred CCceEecCCccceEEEEEeccc----hHHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITED----SKLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
|+.+. ++..+.|+|++++.. ......++.+.| .++||.+.|+. .+++|++++ ..+++++++.+++|
T Consensus 348 -gi~~~-~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~-~~~~~~l~~~l~ri 424 (468)
T PLN02450 348 -GIKCL-KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFA-NMSEETLDLAMKRL 424 (468)
T ss_pred -CCccc-CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEec-CCCHHHHHHHHHHH
Confidence 88764 455777999998631 001224566666 67899998873 468999996 36789999999999
Q ss_pred HHHHHHHH
Q 018243 347 QKIYAGVC 354 (359)
Q Consensus 347 ~~~~~~~~ 354 (359)
++++++..
T Consensus 425 ~~~l~~~~ 432 (468)
T PLN02450 425 KSFVESDS 432 (468)
T ss_pred HHHHHhcc
Confidence 99987655
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=233.28 Aligned_cols=331 Identities=15% Similarity=0.121 Sum_probs=223.7
Q ss_pred ccccccCCCCC----ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhC------CCC-eEEcCCch-HHHHHHHH
Q 018243 4 RTVDLRSDTVT----KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMG------KEA-GLFVPSGT-MGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~-~~~~~~gt-~a~~~~l~ 71 (359)
..++|..+++. .+.+.+.+++.+.......|+...+..++++.++++++ .+. .+++++|+ +++..++.
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~ 113 (404)
T PRK09265 34 KILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQ 113 (404)
T ss_pred CeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHH
Confidence 56889886652 24477777776644334457777778899999999983 332 35555555 45566666
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ ++||+|++++|+|..... .+...|.+++.++.+ .++.+|++++++.++ +++++|+++++ +||
T Consensus 114 ~~~-~~gd~Vlv~~p~y~~~~~---~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~l~~P-~NP 180 (404)
T PRK09265 114 ALL-NNGDEVLVPAPDYPLWTA---AVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT--------PRTKAIVIINP-NNP 180 (404)
T ss_pred HhC-CCCCEEEEeCCCCcChHH---HHHHcCCEEEEEecccccCCCCCHHHHHHhcc--------ccceEEEEECC-CCC
Confidence 666 699999999999876443 356678788877544 346789999999887 67889888765 669
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcCccEEEE-eccccCCCcee--eEEec--CHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG--SKEF 223 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~--~~~~ 223 (359)
||.+++.+++++|.++|+++|++||+||+|....+.. ...+...+.....++++ |+||.+|.|+. ||++. ++++
T Consensus 181 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~ 260 (404)
T PRK09265 181 TGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKH 260 (404)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHH
Confidence 9999999999999999999999999999964322211 11223333222335555 99999976543 77774 4443
Q ss_pred ----HHHHHHHHHhhCCCcchhHHHHHHHHHHHHH--hHHH---HhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 224 ----IKKARRLRKTLGGGMRQVGVLCAAALVALQE--NVLV---MLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~---~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
++.+... .....+. +...+.++..++.. ..++ ..+++.++++.+.+.|++++++++. ++..++++|+
T Consensus 261 ~~~~~~~~~~~-~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~~l~~ 336 (404)
T PRK09265 261 AKGYIEGLDML-ASMRLCA--NVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCV-KPKGALYAFP 336 (404)
T ss_pred HHHHHHHHHHH-hccccCC--CcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEEE
Confidence 3333222 1112222 33334444444421 1111 1235666788889999888787764 4567899999
Q ss_pred Eeccch---HHHHHHHHHHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 295 EITEDS---KLYAACLLKKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 295 ~~~~~~---~~~~~~~~~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+++... ..+.+.+.+.|.++||.+.|+. .+++|+++ ..+++++++++++|.++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 337 KLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred EecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHHh
Confidence 887420 0134456677799999997752 46899999 478999999999999988765
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=234.95 Aligned_cols=322 Identities=17% Similarity=0.140 Sum_probs=231.6
Q ss_pred cccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 5 TVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 5 ~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
+++|..+.+. .+++.+.+++.+.......|+.. ...++++.++++++.+. .+++++|++.++..+..++.++||.|+
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vl 112 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVV 112 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEE
Confidence 3688877555 45588888887754322345543 47899999999998753 577777777666555554436999999
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+++|+|..... .+...|.+++.++.+.+ .+|++++.+.+.+ .++++++++ .++||||.+++.+++.++
T Consensus 113 v~~p~y~~~~~---~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~-------~~~~~i~l~-~P~NPtG~~~~~~~l~~l 180 (369)
T PRK08153 113 TSLGAYPTFNY---HVAGFGGRLVTVPYRDD-REDLDALLDAARR-------ENAPLVYLA-NPDNPMGSWHPAADIVAF 180 (369)
T ss_pred ECCCcchHHHH---HHHHcCCeEEEeeCCCC-CCCHHHHHHHhcc-------cCCcEEEEe-CCCCCCCCCCCHHHHHHH
Confidence 99999766443 25667888888887555 4789988877753 578888885 467799999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhc-CccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCc
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
+++|+ ++++||+||+|.. +...+ ....+.. ..+++++ |+||.+|.|+. ||+++++++++.+......+
T Consensus 181 ~~~~~-~~~~lI~DE~y~~--~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~~---- 252 (369)
T PRK08153 181 IEALP-ETTLLVLDEAYCE--TAPAG-AAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF---- 252 (369)
T ss_pred HHhCC-CCcEEEEeCchhh--hcCcc-cchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcCC----
Confidence 99887 4999999999643 22222 1222221 2344544 99999986543 89999999998887655432
Q ss_pred chhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCc
Q 018243 239 RQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 316 (359)
..+...+.++...++ .+.++.++...++++++.+.|++. |+... +..++++|+.++. ....+.++.++|.++||
T Consensus 253 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~--p~~~~f~~~~~~~-~~~~a~~l~~~l~~~Gi 328 (369)
T PRK08153 253 GMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL--PSATNFVAIDCGR-DGAFARAVLDGLIARDI 328 (369)
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC--CCcCcEEEEECCC-CcccHHHHHHHHHHCCe
Confidence 234555666666663 344445666778888899999887 77643 4578899988753 12357789999989999
Q ss_pred eec-cC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 317 LVM-PE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 317 ~~~-~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+. |+ +..++|+++. ++++++.++++|+++++..+
T Consensus 329 ~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 329 FVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred EEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence 994 43 2468999984 78999999999999987654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=229.66 Aligned_cols=335 Identities=19% Similarity=0.228 Sum_probs=245.7
Q ss_pred cccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|||.+|+-+.+ ++++.++|.. ++..|+.+++..+||+.+++++|.++++.+++|++|+..++.+++ ++||.| +
T Consensus 22 ~iDlltds~t~ams~~~~~a~~~---gd~~Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~-~pGD~V-~ 96 (431)
T cd00617 22 YIDLLTDSGTGAMSDYQWAAMML---GDEAYAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILL-KPGRTV-P 96 (431)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHh---CCCccCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhC-CCCCEE-c
Confidence 579999887765 4888888875 455699999999999999999999999999999999999999887 599977 5
Q ss_pred cCCCcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC-ce
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG-GR 152 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt-G~ 152 (359)
+++. +..+. ......|++++.++.+. .|.+|+++|++.+++. +..++++|+++ .++||+ |.
T Consensus 97 ~~~~-f~~~~--~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~----~~~~~~~I~v~-~p~N~~gG~ 168 (431)
T cd00617 97 SNMH-FDTTR--GHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV----GAENIPYIVLT-ITNNTAGGQ 168 (431)
T ss_pred cCCc-ccchH--HHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc----cCCCccEEEEE-CCcCCCCCc
Confidence 6655 44454 34778898999986642 3559999999999831 01247888884 566687 99
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhh--------hcCchhHhh----hcCccEEEEeccccCCCceeeEEecC
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV--------ALGVPVRRL----VQAADSASVCLSKGLGAPVGSVIVGS 220 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~~~----~~~~d~~~~s~~K~~g~~~gg~~~~~ 220 (359)
+++.+++++|.++|++||++||.|+++.++... +.+.+..++ ....|.+++|++|.++.+.||+++++
T Consensus 169 ~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~ 248 (431)
T cd00617 169 PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALR 248 (431)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeC
Confidence 999999999999999999999999998654221 233444432 24789999999999998999999887
Q ss_pred H-HHHHHHHHHHHhh-CCCc--chhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 221 K-EFIKKARRLRKTL-GGGM--RQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 221 ~-~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
+ ++.++++...... +... ..++...++...++++.. .+.+++..+++++|.+.|++. |+.+.. |.++.++|+.
T Consensus 249 d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~-G~~v~~-P~Ggh~v~~d 326 (431)
T cd00617 249 DDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA-GVPIVE-PAGGHAVFID 326 (431)
T ss_pred cHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCCccC-CCcceEEEEE
Confidence 5 6888876543211 1100 012223333333554421 124555566779999999999 998854 5688899998
Q ss_pred eccc------hHHHHHHHHHHH-HhcCceeccC-----------------CCcEEEEEeC-CCCCHHHHHHHHHHHHHHH
Q 018243 296 ITED------SKLYAACLLKKL-EEHGVLVMPE-----------------SSTRVRIVVH-HQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 296 ~~~~------~~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.- ...++.+|+.+| .+.||.++.- ....+|+.++ ...|.++++.++++|..++
T Consensus 327 ~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~ 406 (431)
T cd00617 327 AREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALY 406 (431)
T ss_pred hHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHH
Confidence 7631 113577888777 8899986321 1256999864 3679999999999999998
Q ss_pred HHHH
Q 018243 351 AGVC 354 (359)
Q Consensus 351 ~~~~ 354 (359)
++-.
T Consensus 407 ~~~~ 410 (431)
T cd00617 407 ERRE 410 (431)
T ss_pred hhHh
Confidence 8754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=233.40 Aligned_cols=322 Identities=18% Similarity=0.216 Sum_probs=226.3
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCC---CccCCChHHHHHHHHHHHHhCCC---------CeEEcCCchH-HHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDD---DVLMHDPTAFRLETEMAKVMGKE---------AGLFVPSGTM-GNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~---------~~~~~~~gt~-a~~~~ 69 (359)
+.++|.++.+.. |+|.+.+++.+..... ..|. .++..+++++++++++.. ..+++++|++ ++..+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 357788876664 4588888887643321 3453 467899999999999732 1266666665 44455
Q ss_pred HHHhhhhcCC-eEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 70 VLVHCETRGS-EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 70 l~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+.+++. +|+ .|++++|+|.. +. ..++..|++++.++.+. ++.+|+++|++.+++.. .+++++|++++ +|
T Consensus 108 ~~~~~~-~g~~~Vlv~~P~y~~-~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~----~~~~k~i~l~~-P~ 178 (374)
T PRK02610 108 LIATCL-GGEGSILVAEPTFSM-YG--ILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQ----NPPVRVVFVVH-PN 178 (374)
T ss_pred HHHHcC-CCCCeEEEcCCChHH-HH--HHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhc----CCCceEEEEeC-CC
Confidence 666553 665 89999999765 44 34788899999997654 47899999999887310 03788999965 57
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEE-EeccccCCCcee--eEEecCHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
||||.+++.++++++.+++ ++++||+||+|.... . ......+.....+++ .|+||.||.|+. ||++++++++
T Consensus 179 NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~--~-~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~ 253 (374)
T PRK02610 179 SPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFS--Q-TTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELI 253 (374)
T ss_pred CCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccC--c-cchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHH
Confidence 7999999999999998876 499999999964321 1 112222322233444 499999987654 9999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.+......+ +. +.+.+.++..+++ .+.+ .+++..+.++.+.+.|++++++.+. +..++++|++++..
T Consensus 254 ~~l~~~~~~~--~~--~~~~q~a~~~~l~~~~~~~~-~~~~~~~~r~~l~~~L~~~~~~~~~--p~~g~f~~~~l~~~-- 324 (374)
T PRK02610 254 AVLEKVRLPY--NL--PSFSQLAAQLALEHRQELLA-AIPEILQERDRLYQALQELPQLRVW--PSAANFLYLRLSQD-- 324 (374)
T ss_pred HHHHHhcCCC--CC--CHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHhCCCcEeC--CCcceEEEEeCCCC--
Confidence 9887665322 22 3344444444553 3333 3334444567788888888777653 56889999998752
Q ss_pred HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 302 ~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+..++.+.|.++||.+.+. .+++||++. +.+++++++++|+++++++
T Consensus 325 ~~~~~~~~~l~~~gi~v~~~-~~~lRls~~---~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 325 AALAALHQALKAQGTLVRHT-GGGLRITIG---TPEENQRTLERLQAALTQL 372 (374)
T ss_pred CCHHHHHHHHHHCCEEEEeC-CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence 46788999999999998764 468999984 3577899999999888764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=232.52 Aligned_cols=316 Identities=19% Similarity=0.181 Sum_probs=226.2
Q ss_pred CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcce
Q 018243 14 TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90 (359)
Q Consensus 14 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~ 90 (359)
..+++++.+++.+...........+...++++.+++++|.+. .++++||++++..++.++. ++|+.|+++.++|++
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-~~g~~vl~~~~~~~~ 86 (356)
T cd06451 8 SNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-EPGDKVLVGVNGVFG 86 (356)
T ss_pred cCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-CCCCEEEEecCCchh
Confidence 344588999997754332211123446799999999999843 3577788999999998887 589999999988876
Q ss_pred e-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc
Q 018243 91 I-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH 169 (359)
Q Consensus 91 ~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~ 169 (359)
. +. ..++..|++++.++.+.++.+|++++++.+++ .++++|+++++ +||+|.+.| +++|.++|+++
T Consensus 87 ~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~-------~~~~~v~i~~~-~~~~G~~~~---~~~i~~~a~~~ 153 (356)
T cd06451 87 DRWA--DMAERYGADVDVVEKPWGEAVSPEEIAEALEQ-------HDIKAVTLTHN-ETSTGVLNP---LEGIGALAKKH 153 (356)
T ss_pred HHHH--HHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc-------cCCCEEEEecc-CCCcccccC---HHHHHHHHHhc
Confidence 3 33 34677899999998777788999999999983 37889998665 569999988 78899999999
Q ss_pred CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH----H---------HHhhC
Q 018243 170 GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR----L---------RKTLG 235 (359)
Q Consensus 170 ~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~----~---------~~~~~ 235 (359)
|+++++|++|++|... .+... .++|+++.|+||++++|.| |+++.++++++.+.. . ....+
T Consensus 154 ~~~li~D~~~~~g~~~---~~~~~--~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (356)
T cd06451 154 DALLIVDAVSSLGGEP---FRMDE--WGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWG 228 (356)
T ss_pred CCEEEEeeehhccCcc---ccccc--cCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhc
Confidence 9999999998765432 12222 2678888899999998877 899999888877643 0 00000
Q ss_pred ---CC-cchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEEEeccchHHHHH
Q 018243 236 ---GG-MRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 236 ---~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 305 (359)
.. ...+.....+...+++ ...+...++..++++++.+.|++. |+++..++. ...+.++.++. +.+..
T Consensus 229 ~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~~~ 305 (356)
T cd06451 229 EGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPE--GVDGD 305 (356)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCC--CCCHH
Confidence 01 0111221222223332 223345667778899999999988 888753321 22334566553 24678
Q ss_pred HHHHHHHhc-CceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEH-GVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 306 ~~~~~l~~~-gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.++|.++ ||.+.++ .+.++|++++..++++++++++++|+++++
T Consensus 306 ~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 306 EVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 999999877 9998764 245899999989999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=234.73 Aligned_cols=318 Identities=20% Similarity=0.191 Sum_probs=225.4
Q ss_pred ccccccCCCC-CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchH-HHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTV-TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTM-GNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~-a~~~~l~~~~~~~g~~ 80 (359)
.+|||..+.+ ..|.+.+.+++.+.......|+...+ .++++.++++++.+. .+++++|++ ++..++.+++ ++||.
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~ 114 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL-RPGDR 114 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCCCE
Confidence 4688998744 45668888888764323334665555 489999999998764 366666655 5555555555 69999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|.... ..++..|.+++.++.+.++.+|++++++.++ +++++|++ +.++||||.+++.++++
T Consensus 115 vli~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~--------~~~~~v~l-~~p~NPtG~~~~~~~~~ 182 (371)
T PRK05166 115 VVTLYPSFPLHE---DYPTMMGARVERVTVTPDLGFDLDALCAAVA--------RAPRMLMF-SNPSNPVGSWLTADQLA 182 (371)
T ss_pred EEEcCCChHHHH---HHHHHcCCeEEEeecCCCCCCCHHHHHHhhh--------cCCCEEEE-eCCCCCCCCCCCHHHHH
Confidence 999999976643 3367889999999887778899999999988 67788888 45566999999999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-c-CccEEE-EeccccCCCcee--eEEe-cCHHHHHHHHHHHHhh
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-Q-AADSAS-VCLSKGLGAPVG--SVIV-GSKEFIKKARRLRKTL 234 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~-~~d~~~-~s~~K~~g~~~g--g~~~-~~~~~~~~~~~~~~~~ 234 (359)
+|+++|++ +++||+||+|..........+..... . ...+++ .|+||.||.|+- ||++ .++++.+.+......+
T Consensus 183 ~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~ 261 (371)
T PRK05166 183 RVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPF 261 (371)
T ss_pred HHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCC
Confidence 99998864 88999999964433111111222221 1 223444 499999986543 8865 4788888876554322
Q ss_pred CCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+ .+...+.++...+ ..+.++.++.+.++++.+.+.|++. |+.+. +..++++|+.++. +..++.+.|.
T Consensus 262 ~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--p~~g~fl~~~~~~----~~~~l~~~l~ 330 (371)
T PRK05166 262 N----VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYRIA--PSRANFLFFDARR----PASAVAEALL 330 (371)
T ss_pred C----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC--CCcCCEEEEeCCC----CHHHHHHHHH
Confidence 2 2334444444444 2345545667778889999999998 87753 4578899998764 4678999998
Q ss_pred hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 313 ~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++||.+.|+. ..++||+++ +.++.+++++.|++++
T Consensus 331 ~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 331 RQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred HCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 8999997753 467999994 5777888888887764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=233.22 Aligned_cols=326 Identities=17% Similarity=0.193 Sum_probs=231.6
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCC----CCCccCCChHHHHHHHHHHHHhCC-------C-CeEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEV----DDDVLMHDPTAFRLETEMAKVMGK-------E-AGLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~-------~-~~~~~~~gt~a~~~~l 70 (359)
..+||+.+++.. |.+.+.+++.+... ....|+...+...+++.++++++. + ..++++|+++++..++
T Consensus 34 ~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~ 113 (394)
T PRK06836 34 NVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVAL 113 (394)
T ss_pred CeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHH
Confidence 458998887654 34777777765322 134466677889999999998852 1 2355666667777778
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
..++ .+|+.|++++|+|.... ..++..|++++.++.+++ +.+|++++++.++ +++++|++++ ++||
T Consensus 114 ~~l~-~~gd~Vli~~p~~~~~~---~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~-p~NP 180 (394)
T PRK06836 114 KAIL-NPGDEVIVFAPYFVEYR---FYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT--------PKTKAVIINS-PNNP 180 (394)
T ss_pred HHhc-CCCCEEEEcCCCCccHH---HHHHHcCCEEEEEecCCccCcCCHHHHHhhcC--------cCceEEEEeC-CCCC
Confidence 7777 59999999999976643 346778999999977655 7899999999998 6889999865 5779
Q ss_pred CceecChhhHHHHHHHHHH------cCcEEEEecccccchhhhcCchhHhhhc-CccEE-EEeccccCCCce-e-eEEec
Q 018243 150 GGRCLSVEYTDSVGEIAKK------HGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSA-SVCLSKGLGAPV-G-SVIVG 219 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~------~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~-~~s~~K~~g~~~-g-g~~~~ 219 (359)
||.++|.+++++|+++|++ ||++||+|++|....+ .+.....+.. ...++ ..|+||.||.|+ + ||+++
T Consensus 181 tG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~ 258 (394)
T PRK06836 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY--DGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAV 258 (394)
T ss_pred CCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc--CCCCCCChHHccCcEEEEecchhhccCcceeeEEEec
Confidence 9999999999999999999 8999999999754322 2212111111 12344 459999998654 3 88888
Q ss_pred CHHHHHHH---HHH---HHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 220 SKEFIKKA---RRL---RKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 220 ~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
++++.+.. ... ....+. ...+...+.+....++... ....+.++++.+.+.|++. |+.+. ++.++.++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~--~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~ 333 (394)
T PRK06836 259 NPEMEDADDLVAALVFANRILGF-VNAPALMQRVVAKCLDATV--DVSIYKRNRDLLYDGLTEL-GFECV-KPQGAFYLF 333 (394)
T ss_pred CHHHhhhHHHHHHHHHHhhcccc-ccCCHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHhC-CCEee-cCCceEEEE
Confidence 87664321 111 111111 1223344444444443322 3455677888899999988 88764 345688899
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.++.. +..++.+.|.++||.+.|+. .+++||+++ .+++++++.+++|+++++++.
T Consensus 334 ~~~~~~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 334 PKSPEE---DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred EeCCCC---CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence 887652 66788888999999998874 468999996 689999999999999998764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=233.03 Aligned_cols=314 Identities=18% Similarity=0.178 Sum_probs=222.6
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCCe-EEcC-CchHHHHHHHHHhhhhcCC
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAG-LFVP-SGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~-~gt~a~~~~l~~~~~~~g~ 79 (359)
.+|||.++.+.. |++.+.+++.+.... ...|.. +...+++++++++++.+.. ++++ |+++++..++.+++ ++||
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~-~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd 102 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPD-PNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF-NHDR 102 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCC-CcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence 568999987665 458888888765432 334543 3568999999999987643 5554 55566667777776 5999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|++++|+|.. +. ..++..|++++.++.++++.+|++.+++ .++++++.+ +|||||.+++.+++
T Consensus 103 ~vlv~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~------------~~~~v~~~~-P~NPtG~~~~~~~~ 166 (353)
T PRK05387 103 PLLFPDITYSF-YP--VYAGLYGIPYEEIPLDDDFSIDVEDYLR------------PNGGIIFPN-PNAPTGIALPLAEI 166 (353)
T ss_pred EEEEeCCCHHH-HH--HHHHHcCCEEEEeecCCCCCCCHHHHHh------------cCCEEEEeC-CCCCCCCCCCHHHH
Confidence 99999999744 54 3477889999999887788899998763 234666644 57799999998888
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc--CccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ--AADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
.+|++.++ ++++|+||+|.. +. +.+...+.. ...+++.|+||.+|.|+- ||+++++++.+.++.......
T Consensus 167 ~~l~~~~~--~~~livDe~y~~--~~--~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~ 240 (353)
T PRK05387 167 ERILAANP--DSVVVIDEAYVD--FG--GESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFN 240 (353)
T ss_pred HHHHHhCC--CcEEEEeCcccc--cC--CcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCC
Confidence 87776543 999999999742 22 222222211 222455599999986542 889999999998876654332
Q ss_pred CCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
. +..+...+.++...+ ..+.++.++++.++++.+.+.|+++ |+.+. +..++++|+.++. .+..++.+.|.+
T Consensus 241 ~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~---~~~~~~~~~l~~ 313 (353)
T PRK05387 241 S-YPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL--PSKANFVFARHPS---HDAAELAAKLRE 313 (353)
T ss_pred C-CCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC--CCcCcEEEEECCC---CCHHHHHHHHHH
Confidence 1 122334444444444 2344446677888899999999998 88763 4477888988764 367889999999
Q ss_pred cCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 314 ~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+||.+.+. ..+++|++++ +++++++++++|++++.
T Consensus 314 ~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 314 RGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred CCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 99998443 2468999984 67999999999998765
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=232.25 Aligned_cols=315 Identities=17% Similarity=0.142 Sum_probs=223.6
Q ss_pred ccccccCCC-CCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDT-VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~~ 80 (359)
..|+|..+. +..|+|.+.+++.+.. ....|. .+...++++.++++++.+. .+++++|+ +++..++..++ ++|++
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~-~~~~Yp-~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~-~~gd~ 129 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMK-FPYVYP-DPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL-DPGDK 129 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhH-hhccCC-CCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc-CCCCE
Confidence 568999884 4456688888886531 223354 3457899999999999764 46666665 45555655665 69999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|++++|+|. .+. ..++..|++++.++.+.++.+|++++++.++. +++++|++++ ++||||.+++.+++.
T Consensus 130 Vlv~~P~y~-~y~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~~~v~l~~-P~NPTG~~~~~~~l~ 198 (380)
T PLN03026 130 IIDCPPTFG-MYV--FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET-------HKPKLLFLTS-PNNPDGSIISDDDLL 198 (380)
T ss_pred EEEcCCChH-HHH--HHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc-------cCCcEEEEeC-CCCCCCCCCCHHHHH
Confidence 999999965 454 34677899999998777788999999999842 6889999965 567999999977777
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccE-EEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADS-ASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGG 237 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~-~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
+|++.+ ++||+||+|.... ..+.....+.....+ ++.|+||.||.++. ||+++++++++.+......+.
T Consensus 199 ~l~~~~----~~vi~DeaY~~~~--~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~~~-- 270 (380)
T PLN03026 199 KILELP----ILVVLDEAYIEFS--TQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN-- 270 (380)
T ss_pred HHHhcC----CEEEEECcchhhc--CCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCCCC--
Confidence 766543 8999999974322 112111112112234 44599999986543 999999999988776554322
Q ss_pred cchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcC
Q 018243 238 MRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHG 315 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 315 (359)
. +...+.++..+++ .+.++.++.+.++++++.+.|++++++.+ .+..++|+|+.++.. .+..++.+.|.++|
T Consensus 271 ~--~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~p~~~~f~~~~~~~~--~~~~~~~~~l~~~g 344 (380)
T PLN03026 271 V--SVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEP--YPSDANFILCRVTSG--RDAKKLKEDLAKMG 344 (380)
T ss_pred C--CHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE--CCCCCeEEEEECCCC--CCHHHHHHHHHHCC
Confidence 2 3344444455553 44454666778888999999998844554 256889999998742 35678999999999
Q ss_pred ceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 316 VLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 316 i~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
|.+.++ ..+++||++. +.+++++++++|+++
T Consensus 345 I~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 345 VMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred eEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 998664 2468999994 678899999988754
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=234.00 Aligned_cols=324 Identities=21% Similarity=0.236 Sum_probs=230.4
Q ss_pred cccccccCCCC-CC-hHHHHHHHHHcCCCC----C----CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTV-TK-PTEAMRAAMASAEVD----D----DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~-~~-~~~~~~~a~~~~~~~----~----~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
..+|||.++.+ .. ++|++++++.+.... . ..++..+...++++.++++++.+..+++++|++++..++..
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~ 118 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTA 118 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHH
Confidence 46799998754 32 458888888764422 1 11234566789999999999987789999999999887777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++||.|++++++|.+... + ....|.+++.++.. |++.+++.++... +.+.++++ ++.+|++|.
T Consensus 119 ~~-~~gd~V~~~~~~~~~~~~-~--~~~~g~~~~~~~~~-----d~~~l~~~i~~~~-----~~~~lvi~-~~~~~~~G~ 183 (385)
T PRK05958 119 LA-GKGDLIVSDKLNHASLID-G--ARLSRARVRRYPHN-----DVDALEALLAKWR-----AGRALIVT-ESVFSMDGD 183 (385)
T ss_pred hC-CCCCEEEEeCccCHHHHH-H--HHhcCCceEEeCCC-----CHHHHHHHHHhcc-----CCCeEEEE-EecccCCCC
Confidence 66 699999999999887664 2 56678888877643 8899999887310 13555655 445568998
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCcc-EEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAAD-SASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d-~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
..+ +++|+++|++||+++|+|++|..+.....+..... +....+ +++.|+||++|. .||+++.++++.+.+.
T Consensus 184 ~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~Gg~~~~~~~~~~~~~ 259 (385)
T PRK05958 184 LAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SGAAVLGSETLIDYLI 259 (385)
T ss_pred cCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CCcEEEcCHHHHHHHH
Confidence 765 89999999999999999999866544322222222 222334 555699999985 5678888988888765
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
.....+..+...++...+++..+++... +...+++.++++++.+.|+++ ++++. +..++++++.++. ..+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~~~--~~~~~~ 334 (385)
T PRK05958 260 NRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL-GFQLM--DSQSAIQPLIVGD--NERALA 334 (385)
T ss_pred HhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEeCC--HHHHHH
Confidence 4332222222223444444555554222 336677888899999999988 77753 3467788888764 246778
Q ss_pred HHHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 307 ~~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.++|.++||.+.+. +..++|++++..++++++++++++|++++
T Consensus 335 ~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 335 LAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 999999999999642 24689999988899999999999998753
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=224.86 Aligned_cols=330 Identities=18% Similarity=0.236 Sum_probs=242.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC-------ccCC--ChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD-------VLMH--DPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~--~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~ 73 (359)
+|+|.+.-.+++.|++.++|........ .||. ....++.|+.+++++|.+. .+||++||+++..++..+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~ 81 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGA 81 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhh
Confidence 5778888888888999999877543321 1221 3456888999999999976 378889999999999984
Q ss_pred h--h---hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 74 C--E---TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 74 ~--~---~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
. . +.+.+|+++.-.|.++.+.....+..|.++.+++.+.+|.+|+++|+++|+ ++|.+|.+.+.+ |
T Consensus 82 ~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~--------~~T~LVSim~aN-n 152 (386)
T COG1104 82 ALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR--------PDTILVSIMHAN-N 152 (386)
T ss_pred HHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC--------CCceEEEEEecc-c
Confidence 2 1 247799999999999987332233469999999999999999999999999 789999996655 4
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKA 227 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~ 227 (359)
-+|++.| +++|.++|+++|+++++|.+|++|-.+ .....+ ++|++++|.||..| |-| |+++.++...-..
T Consensus 153 E~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~Gkip---i~~~~~--~vD~ls~SaHK~~G-pkGiGaLyv~~~~~~~p 223 (386)
T COG1104 153 ETGTIQP---IAEIGEICKERGILFHVDAVQAVGKIP---IDLEEL--GVDLLSFSAHKFGG-PKGIGALYVRPGVRLEP 223 (386)
T ss_pred Ceeeccc---HHHHHHHHHHcCCeEEEehhhhcCcee---cccccc--CcceEEeehhhccC-CCceEEEEECCCCccCc
Confidence 8999988 899999999999999999999776553 233333 69999999999655 677 8888755432221
Q ss_pred H-----HHHHhhCCCcchhHHHHHH--HHHHHHHhHHHHhhhHHHHHHHHHHHHhcC-CCceEecC--CccceEEEEEec
Q 018243 228 R-----RLRKTLGGGMRQVGVLCAA--ALVALQENVLVMLDGDHKKAKLLAEGLNQL-KGLRVDVD--AVETNIVYFEIT 297 (359)
Q Consensus 228 ~-----~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~g~~~~~~--~~~~~~~~~~~~ 297 (359)
. +.+..-.++...+.+...+ +..+.++.. ....+....+++|.+.|.+. |++.+... +.-.+.+.+.++
T Consensus 224 ~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~-~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~ 302 (386)
T COG1104 224 LIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELE-EENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFP 302 (386)
T ss_pred eeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeC
Confidence 0 0000111222222222211 122223333 36667888899999999976 78777433 223455778887
Q ss_pred cchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. +.++.+.-.|..+||.+..++ ...|||+++..++++|++++++.+.+++++++
T Consensus 303 g---v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr 379 (386)
T COG1104 303 G---VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379 (386)
T ss_pred C---CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 6 588999999999999996652 23599999999999999999999999999987
Q ss_pred hh
Q 018243 355 EE 356 (359)
Q Consensus 355 ~~ 356 (359)
+.
T Consensus 380 ~~ 381 (386)
T COG1104 380 EL 381 (386)
T ss_pred hh
Confidence 63
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=232.73 Aligned_cols=332 Identities=20% Similarity=0.229 Sum_probs=233.3
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhC----C--C-C-eEEcCCch-HHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMG----K--E-A-GLFVPSGT-MGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~----~--~-~-~~~~~~gt-~a~~~~l 70 (359)
.+++||..+++..+. +.+.+++.+... ....|+...+..+++++++++++ . + . .+++++|+ +++..++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~ 108 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLM 108 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHH
Confidence 457899988766443 445555554322 23457777788999999999863 2 1 2 36556665 5555666
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
..++ ++|++|++++|+|..... .+...|.+++.++.+.++. +.+++++.+++.. +++++|++++ ++|||
T Consensus 109 ~~~~-~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~~-----~~~~~v~i~~-p~NPt 177 (395)
T PRK08175 109 LATL-DHGDTVLVPNPSYPIHIY---GAVIAGAQVRSVPLVEGVD-FFNELERAIRESY-----PKPKMMILGF-PSNPT 177 (395)
T ss_pred HHhC-CCCCEEEEcCCCCcchHH---HHHHcCCeEEEEecccCCC-cHHHHHHHHhhcc-----CCceEEEEeC-CCCCC
Confidence 6666 699999999999776543 2567888988887765433 5788888887311 3688888854 46699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhcCcc--EEEEeccccCCCcee--eEEecCHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQAAD--SASVCLSKGLGAPVG--SVIVGSKEF 223 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d--~~~~s~~K~~g~~~g--g~~~~~~~~ 223 (359)
|.+++.+++++|.++|++||++||+|++|.... +.+. +...+....| +++.|+||.||.|+. ||++.++++
T Consensus 178 G~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l 255 (395)
T PRK08175 178 AQCVELEFFEKVVALAKRYDVLVVHDLAYADIV--YDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPEL 255 (395)
T ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEecchHhhc--cCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHH
Confidence 999999999999999999999999999964322 2221 2222221133 345699999986643 899999999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
++.+.........+.+.. .+.++...+ +.+.+..++.+.++++++.+.|++. ++.+. .+..++++|+.++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~p~~g~~i~i~l~~~~ 331 (395)
T PRK08175 256 VSALARIKSYHDYGTFTP--LQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVE-MPKASMYVWAKIPEPY 331 (395)
T ss_pred HHHHHHHHhhcccCCCcH--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCEEEEEEEECCccc
Confidence 999887666544443322 333333333 3345556677888899999999998 77763 4558999999997631
Q ss_pred -HHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 -KLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 -~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+..++...| .++||.+.|+. ..++|+++. .+++.+++++++|.+++++.
T Consensus 332 ~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~--~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 332 AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI--ENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHhc
Confidence 12467888776 67999997762 358999994 68899999999999988764
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=231.71 Aligned_cols=338 Identities=13% Similarity=0.152 Sum_probs=231.5
Q ss_pred cccccCCCCCChHHHHHHHHHcCCC-------------CCCccCCChHHHHHHHHHHHHhCC--------C-CeEEcCCc
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEV-------------DDDVLMHDPTAFRLETEMAKVMGK--------E-AGLFVPSG 62 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~l~~~la~~~~~--------~-~~~~~~~g 62 (359)
+|+|...-+....+.+.+.+.+... ....|+...+..+|+++++++++. + ..+++++|
T Consensus 49 ~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G 128 (447)
T PLN02607 49 VIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAG 128 (447)
T ss_pred eEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCC
Confidence 5777777777777788888766422 112355667889999999998852 1 12555555
Q ss_pred -hHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 63 -TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 63 -t~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
++++..++..++ .+||.|+++.|+|..... .+....|++++.++.+ +++.+|++.+++++++.... ..++++
T Consensus 129 ~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~--~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~--~~~vk~ 203 (447)
T PLN02607 129 ATAANELLTFILA-DPGDALLVPTPYYPGFDR--DLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAA--NIRVRG 203 (447)
T ss_pred hHHHHHHHHHHhC-CCCCEEEEcCCCCcchHH--HHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHh--CCCeeE
Confidence 556666666666 699999999999766543 2233578888888765 34568999999988742111 147889
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc-----C-cc-EEE-EeccccCC
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ-----A-AD-SAS-VCLSKGLG 210 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~-----~-~d-~~~-~s~~K~~g 210 (359)
|++.+ ++||||.+++.+++++|.++|++|++.+|+||+|....+.. ...+...+.. + .+ +++ .|+||.||
T Consensus 204 lll~n-P~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg 282 (447)
T PLN02607 204 VLITN-PSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLG 282 (447)
T ss_pred EEEeC-CCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCC
Confidence 99955 56699999999999999999999999999999975433321 1223333211 1 22 444 49999998
Q ss_pred Ccee--eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 211 APVG--SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 211 ~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
.++- ||+++ ++++.+.++....... . +.+.+.++...+ +.++...++++.++++.+.+.|++. |+.
T Consensus 283 ~~GlRvG~ivs~n~~l~~~~~~~~~~~~--~--s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~ 357 (447)
T PLN02607 283 LPGFRVGTIYSYNDKVVTTARRMSSFTL--V--SSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIE 357 (447)
T ss_pred CCcceEEEEEEcCHHHHHHHHHHhhcCC--C--CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 6543 88887 7777776654432221 2 222333333333 2334446677788889999999987 887
Q ss_pred EecCCccceEEEEEeccch----HHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 282 VDVDAVETNIVYFEITEDS----KLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+. ++..+.|+|++++... .....++.++| .++||.+.||. ++++|++++ ..+++++++++++|.+++
T Consensus 358 ~~-~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa-~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 358 CL-KGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFA-NMSEDTLEVALKRIHRFM 435 (447)
T ss_pred cc-cCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEec-cCCHHHHHHHHHHHHHHH
Confidence 63 4568899999986410 01234677677 56899998863 568999996 358999999999999999
Q ss_pred HHHHh
Q 018243 351 AGVCE 355 (359)
Q Consensus 351 ~~~~~ 355 (359)
++.+.
T Consensus 436 ~~~~~ 440 (447)
T PLN02607 436 DRRKT 440 (447)
T ss_pred HHHHh
Confidence 87764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=230.79 Aligned_cols=299 Identities=17% Similarity=0.219 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCC
Q 018243 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGT 115 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~ 115 (359)
+...++++.+++++|.+..++++||++++..++.++. ++||.|+++.+.|++.+. + ++..|++++.++.+ .++.
T Consensus 51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~-~--~~~~g~~~~~~~~~~~~~~~ 126 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYV-A--AERAGLNVKEVPHTGHPEYK 126 (370)
T ss_pred hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHH-H--HHHcCCEEEEEecCCcccCC
Confidence 4567888889999999998889999999999998887 599999999999999885 3 68889999999865 3578
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+|+++|++.++.... ....++++|+++++ +||+|...+ +++|.++|+++|+++|+|++|+.|..+ .....
T Consensus 127 ~d~~~l~~~l~~~~~-~~~~~~~lv~~~~p-~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~---~~~~~-- 196 (370)
T TIGR02539 127 VDPEGYGEVIEEVED-ESGKPPVLALLTHV-DGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP---VSAKE-- 196 (370)
T ss_pred cCHHHHHHHHHHhhh-ccCCCcEEEEEECC-CCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC---CCHHH--
Confidence 899999999863110 00025778888665 459999777 789999999999999999998775322 22222
Q ss_pred cCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcc------hhHHHHHHHHHHHHH---hHHHHhhhHHH
Q 018243 196 QAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMR------QVGVLCAAALVALQE---NVLVMLDGDHK 265 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~---~~~~~~~~~~~ 265 (359)
.+.|+++.|+||+++++.+ |++++++++++.++.....+..+.. .......++..+++. .++ ...+..+
T Consensus 197 ~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~-~~~~~~~ 275 (370)
T TIGR02539 197 IGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVK-RWDEEVK 275 (370)
T ss_pred cCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 2678888999999986443 8899999999988765543222110 011122233334432 222 2333445
Q ss_pred HHHHHHHHHhcCCCceEe-cCCccceEEEEEeccch------HHHHHHHHHHHHhcCce-eccCCCcEEEEEeCCCCCHH
Q 018243 266 KAKLLAEGLNQLKGLRVD-VDAVETNIVYFEITEDS------KLYAACLLKKLEEHGVL-VMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 266 ~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~-~~~~~~~~lRi~~~~~~~~~ 337 (359)
+++++++.|+++ |+++. ..+..++++++.++... ..+...+.+.|.++||. +.++...++|+++. ..+++
T Consensus 276 ~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~~~iRis~~-~~t~e 353 (370)
T TIGR02539 276 KTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQTKYFKLSVY-GLTKE 353 (370)
T ss_pred HHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcceEEEEEec-CCCHH
Confidence 567899999998 88863 23567889988875310 11345799999999997 66665678999975 68999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018243 338 DVHYTLSCFQKIYAGV 353 (359)
Q Consensus 338 ~i~~~~~~l~~~~~~~ 353 (359)
++++++++|+++++++
T Consensus 354 ~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 354 QVEYVVDSFEEIVEEY 369 (370)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=233.16 Aligned_cols=325 Identities=16% Similarity=0.138 Sum_probs=231.2
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC------CccC----CChHHHHHHHHHHHHhCC-C-Ce-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD------DVLM----HDPTAFRLETEMAKVMGK-E-AG-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~------~~~~----~~~~~~~l~~~la~~~~~-~-~~-~~~~~gt~a~~~~l 70 (359)
+.+.|++...+.+++.+.+++.+..... ..+. ......++++.+++++|. + .. ++++|+|+++..++
T Consensus 23 ~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~ 102 (406)
T PRK09295 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVA 102 (406)
T ss_pred ceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHH
Confidence 3688888887777778888876533211 1111 123457889999999997 3 23 56666677777777
Q ss_pred HHh---hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVH---CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~---~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.++ ..++||+|+++++.|.+.+... ..++..|++++.++.+.++.+|+++|++.++ +++++|+++++.
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--------~~t~lv~l~~~~ 174 (406)
T PRK09295 103 NSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFD--------ERTRLLAITHVS 174 (406)
T ss_pred HHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcC--------CCcEEEEEecch
Confidence 654 3358999999999987753211 2345678899999888888899999999998 688999996554
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
||||..+| +++|.++|+++|+++++|++|+.+... .+... .++|++++|+||.+| |.| |+++.++++.+
T Consensus 175 -n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~---~~~~~--~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~ 244 (406)
T PRK09295 175 -NVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHHP---VDVQA--LDCDFYVFSGHKLYG-PTGIGILYVKEALLQ 244 (406)
T ss_pred -hcccccCC---HHHHHHHHHHcCCEEEEEcccccCccc---cCchh--cCCCEEEeehhhccC-CCCcEEEEEchHhHh
Confidence 59999988 789999999999999999998665432 22333 378999999999766 667 89999888776
Q ss_pred HHHHHHH----------------------hhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCC
Q 018243 226 KARRLRK----------------------TLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKG 279 (359)
Q Consensus 226 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g 279 (359)
.+..... ...++. +.....+...+++ ...+...++..++.+++.+.|+++++
T Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~--~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~ 322 (406)
T PRK09295 245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTP--NTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPD 322 (406)
T ss_pred hCCCcccCCceeeeeecCCccccCCchhhcCCCCc--cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5431100 001111 1222222233332 23344556677888999999999988
Q ss_pred ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+++..+....+++.+.++. .+..++.+.|.++||.+..+. +..+|+|++.+++++|++.++++|+
T Consensus 323 ~~~~~~~~~~~iv~~~~~~---~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~ 399 (406)
T PRK09295 323 LTLYGPQNRLGVIAFNLGK---HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQ 399 (406)
T ss_pred EEEeCCCCCceEEEEEECC---cCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 9886543345677777765 356788889999999986543 3479999999999999999999998
Q ss_pred HHHH
Q 018243 348 KIYA 351 (359)
Q Consensus 348 ~~~~ 351 (359)
++..
T Consensus 400 ~i~~ 403 (406)
T PRK09295 400 RIHR 403 (406)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=227.24 Aligned_cols=317 Identities=16% Similarity=0.190 Sum_probs=221.8
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
..+||..+.+. .+++.+.+++.+.......|.. +...++|+.++++++.+. .+++++|++..+..+..++. + +.|
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-~-~~v 96 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLDKLVEYPD-PDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-P-KKV 96 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-C-CcE
Confidence 36889887443 4458888888775433334543 457899999999998764 36566665544444444442 4 589
Q ss_pred EecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
++++|+|.. +. ..++..|++++.++.+. ++.+| +++.+.+. .+++++++.+| |||||.+++.+++
T Consensus 97 ~i~~P~y~~-~~--~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~--------~~~~~v~~~~P-~NPtG~~~~~~~~ 163 (354)
T PRK06358 97 LILAPTFAE-YE--RALKAFDAEIEYAELTEETNFAAN-EIVLEEIK--------EEIDLVFLCNP-NNPTGQLISKEEM 163 (354)
T ss_pred EEecCChHH-HH--HHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc--------cCCCEEEEeCC-CCCCCCccCHHHH
Confidence 999999765 44 33677898998887653 35678 66666665 56888888555 6799999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHh-hhcCccEEEE-eccccCCCcee--eEEec-CHHHHHHHHHHHHhh
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR-LVQAADSASV-CLSKGLGAPVG--SVIVG-SKEFIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~d~~~~-s~~K~~g~~~g--g~~~~-~~~~~~~~~~~~~~~ 234 (359)
++|.++|++||++||+||+|..........+... +.....++++ |+||.||.|+. ||++. ++.+.+.+......
T Consensus 164 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~- 242 (354)
T PRK06358 164 KKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREP- 242 (354)
T ss_pred HHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC-
Confidence 9999999999999999999743322111112111 2112335555 99999996544 88887 57787887665432
Q ss_pred CCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+..+.....++...++ .+.++.++.+.++++.+.+.|++++++++.. +.++++|++++. ..++.+.|.
T Consensus 243 ---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~g~f~~~~~~~-----~~~~~~~l~ 312 (354)
T PRK06358 243 ---WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK--PSVNFIFFKLEK-----PIDLRKELL 312 (354)
T ss_pred ---CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC--CcceEEEEEcCc-----hHHHHHHHH
Confidence 2234444555555553 3445466777888999999999987877643 367799998864 268999998
Q ss_pred hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 313 ~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++||.+.++. ..++||++ .+.++.++++++|++++
T Consensus 313 ~~gI~v~~~~~f~~~~~~~iRls~---~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 313 KKGILIRSCSNYRGLDENYYRVAV---KSREDNKKLLKALEVIL 353 (354)
T ss_pred HCCeEEEECCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHh
Confidence 8999997752 35799998 57899999999998765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=232.76 Aligned_cols=319 Identities=22% Similarity=0.224 Sum_probs=226.7
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
.+|||.++.+.. |.+.+.+++.+.......|+ .++..++++.++++++.+. .+++++|+++....+.....++||.|
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~V 101 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEV 101 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 468899886654 66889888877543334453 4688999999999999764 47777777765555444444699999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
+++.|+|.. +. ...+..|.+++.++.+.++.+|++.+++.++ +++++|++++ ++||||.+++.+++.+
T Consensus 102 li~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~--------~~~~~v~l~~-p~NPtG~~~~~~~l~~ 169 (352)
T PRK03321 102 IFAWRSFEA-YP--ILVQVAGATPVQVPLTPDHTHDLDAMAAAIT--------DRTRLIFVCN-PNNPTGTVVTPAELAR 169 (352)
T ss_pred EeCCCCHHH-HH--HHHHHcCCEEEEccCCCCCCCCHHHHHHhhc--------cCCCEEEEeC-CCCCcCCCcCHHHHHH
Confidence 999998654 33 2367788899999877668889999999987 6788999965 5669999999766666
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcC-chhHhhhcCccEEEE-eccccCCCce-e-eEEecCHHHHHHHHHHHHhhCCC
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQAADSASV-CLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTLGGG 237 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~d~~~~-s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
+++.+ +++++||+|++|......... .....+....+++++ |+||.||.|+ . ||+++++++++.+..... ..+
T Consensus 170 l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~--~~~ 246 (352)
T PRK03321 170 FLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVAV--PFS 246 (352)
T ss_pred HHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhcC--CCC
Confidence 66554 369999999996432221111 111222223345555 9999998643 2 889999999998875432 222
Q ss_pred cchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 238 MRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
.+.+.+.++..++ ..+.+ .+++..++++.+.+.|++. ++.+. +..++++|+.++. +..++.+.|.++
T Consensus 247 --~s~~~q~~a~~~l~~~~~~~~-~~~~~~~~r~~~~~~L~~~-~~~~~--~~~g~~i~i~l~~----~~~~~~~~l~~~ 316 (352)
T PRK03321 247 --VNSLAQAAAIASLAAEDELLE-RVDAVVAERDRVRAALRAA-GWTVP--PSQANFVWLPLGE----RTADFAAAAAEA 316 (352)
T ss_pred --CCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHC-CCccC--CCCCCEEEEeCCC----CHHHHHHHHHHC
Confidence 2444444444444 23333 4445556667788889887 77652 3468899998854 467899999999
Q ss_pred CceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 315 gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
||.+.+.+..++||++ .+.++.++++++|++++.
T Consensus 317 gI~v~~~~~~~iRi~~---~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 317 GVVVRPFAGEGVRVTI---GAPEENDAFLRAARAWRA 350 (352)
T ss_pred CEEEEccCCCcEEEee---CCHHHHHHHHHHHHHHhc
Confidence 9999887667899998 578999999999998764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=232.03 Aligned_cols=328 Identities=17% Similarity=0.207 Sum_probs=232.8
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC--C-c---cC----CChHHHHHHHHHHHHhCCC-C--eEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD--D-V---LM----HDPTAFRLETEMAKVMGKE-A--GLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~--~-~---~~----~~~~~~~l~~~la~~~~~~-~--~~~~~~gt~a~~~~l 70 (359)
..+.|..+....+++.+.+++.+..... . . +. ......++++.+++++|.+ . .++++|+++++..++
T Consensus 18 ~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~ 97 (403)
T TIGR01979 18 PLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVA 97 (403)
T ss_pred ceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHH
Confidence 3577888888777777888876533211 1 0 11 1234578899999999987 2 366666777777766
Q ss_pred HHh---hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVH---CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~---~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.++ ..++|++|+++++.|.+.+... ..+...|.+++.++.++++.+|++++++.++ +++++|+++++.
T Consensus 98 ~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~--------~~~~lv~~~~~~ 169 (403)
T TIGR01979 98 YSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLT--------EKTKLVAITHVS 169 (403)
T ss_pred HHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhc--------cCCeEEEEEccc
Confidence 664 2258999999999988754211 1245678899999888888899999999998 789999996655
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
||||..+| +++|.++|+++|+++|+|++|+.+... .....+ +.|++++|+||++| |.| |+++.++++.+
T Consensus 170 -~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~---~~~~~~--~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~ 239 (403)
T TIGR01979 170 -NVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP---VDVQAL--DCDFYVFSGHKMYG-PTGIGVLYGKEELLE 239 (403)
T ss_pred -ccccccCC---HHHHHHHHHHcCCEEEEEchhhcCccc---cCcccc--CCCEEEEecccccC-CCCceEEEEchHHHh
Confidence 59999988 789999999999999999998665432 222222 68999999999887 666 88888888776
Q ss_pred HHHHHHHh--------------------hCCCcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 226 KARRLRKT--------------------LGGGMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 226 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
.+...... +..++ .+.....+...+++. ..+...++..+.++++.+.|+++++++
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~ 318 (403)
T TIGR01979 240 QMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGT-PNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLR 318 (403)
T ss_pred cCCCeecCCCceeecccCccccCCChhhcCCCC-ccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 64321100 00011 111222222333322 234466778888999999999988998
Q ss_pred EecCCc---cceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 282 VDVDAV---ETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 282 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+..++. .++++.+.++. .+..++.+.|.++||.+..+. ..++|++++..++++|+++++++|
T Consensus 319 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l 395 (403)
T TIGR01979 319 IYGPRDAEDRGGIISFNVEG---VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEAL 395 (403)
T ss_pred EeCCCCccccCceEEEEeCC---cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHH
Confidence 864431 36677777764 356788889999999986542 468999999899999999999999
Q ss_pred HHHHHHH
Q 018243 347 QKIYAGV 353 (359)
Q Consensus 347 ~~~~~~~ 353 (359)
+++++.+
T Consensus 396 ~~~~~~~ 402 (403)
T TIGR01979 396 KKVRKFF 402 (403)
T ss_pred HHHHHHh
Confidence 9887765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=232.87 Aligned_cols=323 Identities=18% Similarity=0.160 Sum_probs=217.6
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCC------CCCccCCChHHHHHHHHHHHHh------CCC-CeEEcCCchHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEV------DDDVLMHDPTAFRLETEMAKVM------GKE-AGLFVPSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~------~~~-~~~~~~~gt~a~~~ 68 (359)
+.+++|..+.+..+ ++.+.+++.+... ....|+..++..++++++++++ +.+ ..+++++|++..+.
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~ 113 (409)
T PRK07590 34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTG 113 (409)
T ss_pred CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHH
Confidence 35788988876644 3677777665432 2235777788899999999986 222 23777777665555
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCcc-----------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVH-----------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
.+..++ .+||+|++++|+|..... .++..|.+ ++.++.+.++.+..+ +.+ +++
T Consensus 114 ~l~~~~-~~gd~V~v~~P~Y~~~~~---~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-----~~~-------~~~ 177 (409)
T PRK07590 114 NILDIF-GPDNTIAVTDPVYPVYVD---TNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPE-----LPE-------EKV 177 (409)
T ss_pred HHHHhc-CCCCEEEEeCCCCcchHH---HHHHcCCcccccccccccceeEeecccccCCccc-----Ccc-------cCc
Confidence 566666 599999999999766543 46677765 777766533222221 111 578
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EEE-EeccccCCCcee
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SAS-VCLSKGLGAPVG 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~~-~s~~K~~g~~~g 214 (359)
++|+++ .++||||.+++.+++++|+++|++|+++||+||+|........ ..+...+....+ +++ .|+||.+|.|+.
T Consensus 178 k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGl 256 (409)
T PRK07590 178 DIIYLC-FPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGT 256 (409)
T ss_pred eEEEEe-CCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCc
Confidence 899985 5567999999999999999999999999999999653222110 112222221122 454 499999986544
Q ss_pred --eEEecCHHHHHHH------------HHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhc
Q 018243 215 --SVIVGSKEFIKKA------------RRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 215 --g~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~ 276 (359)
||+++++++++.+ .........+. +.+.+.++...+. .+.++.++.+.++++.+.+.|++
T Consensus 257 RiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 334 (409)
T PRK07590 257 RCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGV--SYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES 334 (409)
T ss_pred eeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCc--CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888732 11111111122 3334444444442 34444666778888999999999
Q ss_pred CCCceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 277 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
. ++.+. ++..++++|++++.. .+..++.+.| +++||.+.|+. .+++||++ ..+++++++++++|.++
T Consensus 335 ~-~~~~~-~~~g~~f~wi~~~~~--~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 335 A-GFEVY-GGVNAPYIWVKTPDG--MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA--FGSRENVLEAMERIKKA 408 (409)
T ss_pred c-CCcee-cCCcceEEEEECCCC--CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc--cCCHHHHHHHHHHHHhh
Confidence 8 77764 345788999999753 4567888887 57899997763 45899996 46889999999999765
Q ss_pred H
Q 018243 350 Y 350 (359)
Q Consensus 350 ~ 350 (359)
+
T Consensus 409 ~ 409 (409)
T PRK07590 409 L 409 (409)
T ss_pred C
Confidence 3
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=228.93 Aligned_cols=325 Identities=23% Similarity=0.253 Sum_probs=231.6
Q ss_pred ccccccCCCCCCh--HHHHHHHHHcCCCCC----C----ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP--TEAMRAAMASAEVDD----D----VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~--~~~~~~a~~~~~~~~----~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+++|.+..+.+. +|++++++.+..... . ..+..+...++++.++++++.+..+++++|++++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~ 81 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTL 81 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHh
Confidence 4678888766543 388888888755321 1 12457778999999999999988899999999999888877
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++|++|++++++|.+... + +...|++++.++. +|.+++++.+++.. ...+++++++++ .+||||..
T Consensus 82 ~-~~gd~Vl~~~~~~~~~~~-~--~~~~g~~~~~~~~-----~~~~~le~~i~~~~---~~~~~~~v~~~~-~~~~tG~~ 148 (349)
T cd06454 82 A-GKGDLIISDSLNHASIID-G--IRLSGAKKRIFKH-----NDMEDLEKLLREAR---RPYGKKLIVTEG-VYSMDGDI 148 (349)
T ss_pred c-CCCCEEEEehhhhHHHHH-H--HHHcCCceEEecC-----CCHHHHHHHHHHhh---ccCCCeEEEEec-cccCCCCc
Confidence 7 599999999999988664 2 5667888877753 37888888887421 003466777745 45599998
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
.+ +++|.++|+++|+++|+|++|++|.....+.....+ ..+.|+++.|+||+++. .||+++.++++.+.+...
T Consensus 149 ~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~~~~~~~~~~ 224 (349)
T cd06454 149 AP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSKELIDYLRSY 224 (349)
T ss_pred cC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCHHHHHHHHHh
Confidence 66 899999999999999999998765543222211111 23567888899999986 567888888888877654
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+..+....+...+++..+++.. .+...++..++++++.+.|+++ ++....+ ....+.++.++. ..+..++.
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 300 (349)
T cd06454 225 ARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFPVGGS-PSHIIPPLIGDD--PAKAVAFS 300 (349)
T ss_pred chhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCcccCC-CCCcEEEEeCCC--hHHHHHHH
Confidence 4333322223444444555555432 2336677888999999999987 7776433 233334444432 24678999
Q ss_pred HHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 309 ~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+.|.++||.+.+. +...+|++++..++++++++++++|+++
T Consensus 301 ~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 301 DALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred HHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 9998889998642 2468999998889999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=228.58 Aligned_cols=316 Identities=15% Similarity=0.082 Sum_probs=218.1
Q ss_pred ccccccCCCC-CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchH-HHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTV-TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTM-GNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~-a~~~~l~~~~~~~g~~ 80 (359)
..+||..+.+ .+|++.+.+++.+.......|.. +...++++.++++++.+. .+++++|++ ++..++.. + .+|+
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~-l-~~g~- 96 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-VEYRHLHQALARHHQVPASWILAGNGETESIFAVVSG-L-KPRR- 96 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH-h-CCCC-
Confidence 3588887744 45668888888765433334543 457999999999998764 365666654 55555554 4 3665
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
+++..|+|.. +. ..++..|.+++.++.++ ++.+| +++.+.+. +++++|++++ ++||||..++.++
T Consensus 97 viv~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~--------~~~k~v~l~~-p~NPTG~~~~~~~ 163 (356)
T PRK08056 97 AMIVTPGFAE-YR--RALQQVGCEIRRYSLREADGWQLT-DAILEALT--------PDLDCLFLCT-PNNPTGLLPERQL 163 (356)
T ss_pred EEEeCCCcHH-HH--HHHHHcCCeEEEEecccccCCCcc-HHHHHhcc--------CCCCEEEEeC-CcCCCCCCCCHHH
Confidence 7777888655 43 34778899999997653 34445 35555565 6788999855 5669999999999
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHh-hhc-CccEEEEeccccCCCcee--eEEec-CHHHHHHHHHHHHh
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR-LVQ-AADSASVCLSKGLGAPVG--SVIVG-SKEFIKKARRLRKT 233 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~-~~d~~~~s~~K~~g~~~g--g~~~~-~~~~~~~~~~~~~~ 233 (359)
+++|+++|++++++||+|++|.... ..+....+ +.. ...+++.|+||+||.++. ||++. ++++++.++.....
T Consensus 164 ~~~i~~~a~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~ 241 (356)
T PRK08056 164 LQAIAERCKSLNIALILDEAFIDFI--PDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP 241 (356)
T ss_pred HHHHHHHHHhcCCEEEEecchhccC--CcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC
Confidence 9999999999999999999964322 12221111 211 223555699999996544 88887 56777776543221
Q ss_pred hCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH
Q 018243 234 LGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
+..+...+.++...++ .+..+.++++.++++++.+.|++++++.+. +..++++|+.++. +..++.+.|
T Consensus 242 ----~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~l 311 (356)
T PRK08056 242 ----WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW--PGRANYLFLRCER----PDIDLQRAL 311 (356)
T ss_pred ----CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc--CCCCcEEEEEcCC----ChHHHHHHH
Confidence 2223344444444442 334445667888899999999988787764 3478999998875 356889999
Q ss_pred HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 312 EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 312 ~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++||.+.++. .+++||++ .+.++.+.++++|+++++
T Consensus 312 ~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 312 LTQRILIRSCANYPGLDSRYYRVAI---RSAAENERLLAALRNVLT 354 (356)
T ss_pred HHCCeEEEECCCCCCCCCCEEEEEE---cCHHHHHHHHHHHHHHHc
Confidence 88999986553 35899998 367999999999987654
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=232.18 Aligned_cols=319 Identities=16% Similarity=0.189 Sum_probs=227.6
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCC------ccCC----ChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHHHh
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEVDDD------VLMH----DPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~----~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~~~ 73 (359)
.|+.+....+++.+.+++.+...... .+.. .....++++.++++++.+ ..++++|+++++..++.++
T Consensus 2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l 81 (373)
T cd06453 2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGL 81 (373)
T ss_pred cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHh
Confidence 45666666666777777766432111 1111 234578889999999987 3467788888999999888
Q ss_pred hhh--cCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 CET--RGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~~~--~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
... +|++|++++++|++.+... ..++..|++++.++.+.++.+|++++++.++ +++++|++.++++ ||
T Consensus 82 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~~~~-~t 152 (373)
T cd06453 82 GRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLT--------ERTKLVAVTHVSN-VL 152 (373)
T ss_pred hhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhc--------CCceEEEEeCccc-cc
Confidence 743 8899999999998864311 2245678899999888888899999999998 6788999866555 99
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
|...| +++|.++|+++|++||+|++|+.+... ..... .++|++++|++|+++++..|+++.++++++.++..
T Consensus 153 G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~---~~~~~--~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~ 224 (373)
T cd06453 153 GTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP---VDVQD--LGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPY 224 (373)
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee---eeccc--cCCCEEEeccccccCCCCcEEEEEchHHhhcCCCe
Confidence 99988 789999999999999999998665432 11222 26899999999999874448898998888776533
Q ss_pred HHh--------------------hCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-
Q 018243 231 RKT--------------------LGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD- 285 (359)
Q Consensus 231 ~~~--------------------~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~- 285 (359)
... +..++ .+.....+...+++ ...+...++..++++++.+.|++++++++..+
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 303 (373)
T cd06453 225 GGGGEMIEEVSFEETTYADLPHKFEAGT-PNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA 303 (373)
T ss_pred ecCCCccccccccccccCCCccccCCCC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc
Confidence 210 00001 11111222222332 23344666777889999999999988887532
Q ss_pred CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 286 AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
...++++++.++. .+..++.+.|.++||.+.+++ ..++|++++..++++|+++++++|
T Consensus 304 ~~~~~~~~~~~~~---~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 304 EDRAGVVSFNLEG---IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred cccCCeEEEEECC---cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 2246677787764 477899999999999885432 468999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=231.70 Aligned_cols=330 Identities=18% Similarity=0.182 Sum_probs=229.7
Q ss_pred ccccccCCC-CCC-hHHHHHHHHHcCCCC-CCc-------cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDT-VTK-PTEAMRAAMASAEVD-DDV-------LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~-~~~-~~~~~~~a~~~~~~~-~~~-------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++. +.. ++|.+.+++.+.... ... .+..+...++++.+++++|.+..+++++|++++..++.++
T Consensus 43 ~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l 122 (397)
T PRK06939 43 EVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETL 122 (397)
T ss_pred eEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHh
Confidence 568998876 344 347777766654322 111 1234556789999999999888899999999999988888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++||.|++++|+|++... + +...+.+++.++. .|++++++.+++.... ..++++|++.+.. |++|..
T Consensus 123 ~-~~gd~vi~~~~~~~~~~~-~--~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~--~~~~~~v~~~~v~-~~~G~~ 190 (397)
T PRK06939 123 L-GKEDAIISDALNHASIID-G--VRLCKAKRYRYAN-----NDMADLEAQLKEAKEA--GARHKLIATDGVF-SMDGDI 190 (397)
T ss_pred C-CCCCEEEEEhhhhHHHHH-H--HHhcCCceEEeCC-----CCHHHHHHHHHhhhcc--CCCCeEEEEecCc-CCCCCc
Confidence 7 599999999999988664 2 5666777777654 3888998888742111 1367788775544 488985
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH---hhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR---RLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~---~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
. ++++|.++|++||++||+|++|.++.....+.... .+....|+++.|+||+++++.+||+++++++++.+...
T Consensus 191 ~---~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~ 267 (397)
T PRK06939 191 A---PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQR 267 (397)
T ss_pred C---CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHh
Confidence 4 48999999999999999999986554332222111 12224678888999999656679999999998887654
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+.......+..++++..+++... ++.++++.++++++.+.|+++ ++++.. ..+.++++.++. ..+..++.
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~~~~~~~~--~~~~~~~~ 342 (397)
T PRK06939 268 SRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-GFTLGP--GEHPIIPVMLGD--AKLAQEFA 342 (397)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCC--CCCCEEEEEECC--HHHHHHHH
Confidence 32221111123333444444443221 236677888999999999988 776532 244555555543 24678899
Q ss_pred HHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 309 ~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.|.++||.+.+. +..++|++++..++++++++++++|++++++.
T Consensus 343 ~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 343 DRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred HHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 9998889988532 23579999988899999999999999988765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=227.87 Aligned_cols=317 Identities=18% Similarity=0.118 Sum_probs=215.7
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CC--C-CeEEcCCchH-HHHHHHHHhh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GK--E-AGLFVPSGTM-GNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~--~-~~~~~~~gt~-a~~~~l~~~~ 74 (359)
.++||+.+.+..+ ++.+.+++.+.......|....+..++++++++++ |. + ..+++++|++ ++..++..++
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~ 104 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVL 104 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHh
Confidence 6799999877644 47788887764433455776677889999988775 42 2 2366666665 4445555554
Q ss_pred -hhcCCeEEecCCCcceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 -ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 -~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
.++|+.|+++.|+|..... .+...|++++.++.+.+ +.+|..+. .+ .++++|++. .+|||||
T Consensus 105 ~~~~gd~vlv~~P~y~~~~~---~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~---------~~~k~v~i~-nP~NPTG 169 (374)
T PRK05839 105 FDKQNPTIAYPNPFYQIYEG---AAIASRAKVLLMPLTKENDFTPSLNEK--EL---------QEVDLVILN-SPNNPTG 169 (374)
T ss_pred cCCCCCEEEECCCCchhhHH---HHHhcCCEEEEeecccccCCcCCcchh--hh---------ccccEEEEe-CCCCCcC
Confidence 2478999999999766443 36788999999977543 44454332 22 357899985 5667999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-----cC-ccEEEE-eccccCCCcee--eEEecCHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-----QA-ADSASV-CLSKGLGAPVG--SVIVGSKE 222 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~-~d~~~~-s~~K~~g~~~g--g~~~~~~~ 222 (359)
.+++.+++++|+++|+++|++||+||+|..........+..... .. ..++++ |+||.|+.|+- ||++++++
T Consensus 170 ~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~ 249 (374)
T PRK05839 170 RTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDAS 249 (374)
T ss_pred cccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHH
Confidence 99999999999999999999999999964321110111111110 01 235554 99999876644 99999999
Q ss_pred HHHHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 223 FIKKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
+++.+.......+.+.+ ...+.++...+ +.+.++.++.+.++++.+.+.| ++. .+.+++++|++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----~~~---~p~gg~fi~~~~~~-- 318 (374)
T PRK05839 250 ILKKYKAYRTYLGCASP--LPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL----GIT---IPPATFYVWLPVDN-- 318 (374)
T ss_pred HHHHHHHHHhhcCCCCC--hHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc----CCC---CCCeeEEEEEeCCC--
Confidence 99988776655444432 23333333333 3444445666667777766655 333 35689999999864
Q ss_pred HHHHHHHHHHH-HhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.++| +++||.+.|+. .+++||++. .+++++++++++|.++++
T Consensus 319 ---~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 319 ---DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred ---hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 35788888 46999997752 478999995 579999999999998875
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=232.72 Aligned_cols=330 Identities=15% Similarity=0.165 Sum_probs=233.2
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC--C----ccC----CChHHHHHHHHHHHHhCCC--C-eEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD--D----VLM----HDPTAFRLETEMAKVMGKE--A-GLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~--~----~~~----~~~~~~~l~~~la~~~~~~--~-~~~~~~gt~a~~~~l 70 (359)
+.+.|.+.....+++.+.+++.+..... . .+. ..+...++++.+++++|.+ . .++++|+|+++..++
T Consensus 32 ~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~ 111 (424)
T PLN02855 32 KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVA 111 (424)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHH
Confidence 3678888877777778888876632211 0 111 1223578899999999984 2 366667777777777
Q ss_pred HHh---hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVH---CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~---~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..+ ..++|++|+++.+.|.+.+... ..++..|.+++.++.+.++.+|++++++.++ +++++|+++++
T Consensus 112 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~--------~~t~lv~i~~~- 182 (424)
T PLN02855 112 YTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLS--------EKTKLVATHHV- 182 (424)
T ss_pred HHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhc--------cCceEEEEeCc-
Confidence 653 2358999999999987754200 2245678899999877777799999999998 78999999654
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
+||||..+| +++|.++|+++|+++++|++|+.+.. ......+ ++|+++.|+||.+| |.| |+++.++++++
T Consensus 183 ~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g~~---~~~~~~~--~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~ 253 (424)
T PLN02855 183 SNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVPHM---PVDVQTL--GADFLVASSHKMCG-PTGIGFLWGKSDLLE 253 (424)
T ss_pred cccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCc---CCCchhc--CCCEEEeecccccC-CCccEEEEEchhhhh
Confidence 459999998 78999999999999999999865433 2222222 68999999999665 666 89999888877
Q ss_pred HHHHHHH--------------------hhCCCcchhHHHH-HHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 226 KARRLRK--------------------TLGGGMRQVGVLC-AAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 226 ~~~~~~~--------------------~~~~~~~~~~~~~-~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
.+..... .+..++ ..... ++...+++ ...+...++..+.++++++.|++++++
T Consensus 254 ~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~ 331 (424)
T PLN02855 254 SMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGT--PAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGV 331 (424)
T ss_pred cCCCEecCCCceeeeecCccccCCChhhccCCC--hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 6532210 011111 11111 22222332 244446667778899999999999899
Q ss_pred eEecCC-----ccceEEEEEeccchHHHHHHHHHHHHhc-CceeccCC------------CcEEEEEeCCCCCHHHHHHH
Q 018243 281 RVDVDA-----VETNIVYFEITEDSKLYAACLLKKLEEH-GVLVMPES------------STRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 281 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~ 342 (359)
++..+. ..++++.+.++. .+..++.+.|.++ ||.+..+. ..++|++++++++++|++++
T Consensus 332 ~i~~~~~~~~~~r~~~v~~~~~~---~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l 408 (424)
T PLN02855 332 RIYGPKPSEGVGRAALCAFNVEG---IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAF 408 (424)
T ss_pred EEeCCCcccccCcccEEEEEECC---cCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHH
Confidence 886432 235677788764 3677899999665 99986543 35799999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 018243 343 LSCFQKIYAGVCEE 356 (359)
Q Consensus 343 ~~~l~~~~~~~~~~ 356 (359)
++.|+++++.++.-
T Consensus 409 ~~~l~~~~~~~~~~ 422 (424)
T PLN02855 409 IHALKDTIAFFSSF 422 (424)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=231.60 Aligned_cols=336 Identities=13% Similarity=0.116 Sum_probs=223.7
Q ss_pred cccccCCCCCChHHHHHHHHHcCCC-------------CCCccCCChHHHHHHHHHHHHhCC--------C-CeEEcC-C
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEV-------------DDDVLMHDPTAFRLETEMAKVMGK--------E-AGLFVP-S 61 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~~~~~~l~~~la~~~~~--------~-~~~~~~-~ 61 (359)
+|++...-+....+.+.+.+.+... ....|+...+..+++++++++++. + ..++++ |
T Consensus 48 ~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~G 127 (496)
T PLN02376 48 IIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGG 127 (496)
T ss_pred eEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccc
Confidence 4666665555544454544444211 112466778889999999998862 2 225444 5
Q ss_pred chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccc-cCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIST-IGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 62 gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
+++++..++.+++ .+||.|++++|+|..... .+. ..|++++.++.+ +++.+|++.+++.+++.... ..+++
T Consensus 128 a~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~---~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~--~~~~k 201 (496)
T PLN02376 128 ATGANETIMFCLA-DPGDVFLIPSPYYAAFDR---DLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQES--NKKVK 201 (496)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCccchHH---HHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhc--CCCee
Confidence 5566667777776 599999999999776543 244 579999999774 45788999998765321000 04788
Q ss_pred EEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhcC-------cc-EE-EEecccc
Q 018243 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQA-------AD-SA-SVCLSKG 208 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~~-------~d-~~-~~s~~K~ 208 (359)
+|++++ ++||||.+++.+++++|+++|++||++||+||+|....+.. ...+...+... .+ ++ +.|+||.
T Consensus 202 ~l~l~n-P~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~ 280 (496)
T PLN02376 202 GLILTN-PSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKD 280 (496)
T ss_pred EEEEcC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEecccc
Confidence 888854 56699999999999999999999999999999975432211 11233333211 13 33 4599999
Q ss_pred CCCcee--eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhcCCC
Q 018243 209 LGAPVG--SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQLKG 279 (359)
Q Consensus 209 ~g~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~~~g 279 (359)
||.|+- ||+++ ++.+.+.++..... + .. +.+.+.++...+ +.++...++++.++.+.+.+.|++. +
T Consensus 281 ~glpGlRvG~li~~~~~l~~~~~~~~~~-~-~v--s~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-g 355 (496)
T PLN02376 281 MGLPGFRVGIVYSFNDSVVSCARKMSSF-G-LV--SSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-D 355 (496)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhhc-C-CC--CHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 986544 88887 56666655443322 2 12 333344333333 2333334666778888999999987 8
Q ss_pred ceEecCCccceEEEEEeccch-----HHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDS-----KLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+.+. ++.++.++|+.++... ..+..++.+.| .+.||.+.|+. ++++||+++ ..++++++..+++|+
T Consensus 356 i~~~-~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa-~~~~~~l~~al~rl~ 433 (496)
T PLN02376 356 IACL-TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFA-NMDDDTLHVALGRIQ 433 (496)
T ss_pred Cccc-CCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEee-CCCHHHHHHHHHHHH
Confidence 7764 3567899999986410 01235677777 55799998863 458999996 467899999999999
Q ss_pred HHHHHHH
Q 018243 348 KIYAGVC 354 (359)
Q Consensus 348 ~~~~~~~ 354 (359)
+++.+..
T Consensus 434 ~~l~~~~ 440 (496)
T PLN02376 434 DFVSKNK 440 (496)
T ss_pred HHHHHhh
Confidence 9987544
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=235.04 Aligned_cols=333 Identities=18% Similarity=0.146 Sum_probs=223.6
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhC-----C---C---CeE-EcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMG-----K---E---AGL-FVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~-----~---~---~~~-~~~~gt~a~~~~l 70 (359)
..|+|..+.+..+. +.+.+ +.+...+. .|....+..++++++++.+. . + ..+ +++|+++|+..++
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e-~~~~~~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~ 178 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYE-LVDGIIGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIF 178 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHH-HHHHHhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence 45788888877666 44555 44434444 48888899999999987431 1 1 134 5555667777777
Q ss_pred HHh----hhhcCCeEEecCCCcceeeccccccccC--CccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 71 LVH----CETRGSEVILGDNSHIHIYENGGISTIG--GVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 71 ~~~----~~~~g~~vl~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
.++ +..+||+|++++|+|..... .+.+. +.+++.++.+ .++.+|.+++++.++ +++++|++
T Consensus 179 ~aL~~~~ll~pGD~Vlv~~P~y~~Y~~---~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~--------~~tkai~l 247 (527)
T PRK09275 179 DSLKENGLLKAGDKIALMTPIFTPYLE---IPELPRYDLEVVHINADEENEWQYPDSELEKLRD--------PSIKALFL 247 (527)
T ss_pred HHHhhhhcCCCCCEEEEeCCChHHHHH---HHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC--------CCCCEEEE
Confidence 752 23699999999999776543 34554 4555556432 357899999999877 78999999
Q ss_pred eccccCCCceecChhhHHHHHHHHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEe
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIV 218 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~ 218 (359)
++ ++||||.+++.+++++|+++|++ ++++||+||+|.. +.....+........-+++.|+||.||++++ ||++
T Consensus 248 ~n-P~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~--f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~ 324 (527)
T PRK09275 248 VN-PSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGT--FVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIA 324 (527)
T ss_pred eC-CcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChh--hcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhh
Confidence 65 56799999999999999999965 4999999999643 2222223222211122444599999998766 8998
Q ss_pred cCHH-----HHHHH--------------------------------HHHHHhhCCCcchhHHHHHH---HHHHH---HHh
Q 018243 219 GSKE-----FIKKA--------------------------------RRLRKTLGGGMRQVGVLCAA---ALVAL---QEN 255 (359)
Q Consensus 219 ~~~~-----~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~l---~~~ 255 (359)
++++ +++.+ +.+......+.+.+.+.+.+ ....+ +..
T Consensus 325 ~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~ 404 (527)
T PRK09275 325 LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAY 404 (527)
T ss_pred cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHH
Confidence 8765 33222 33334444444433333322 22223 344
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCceEe-cCCccceEEEEEeccch--------------HHHHHHHHHHH-HhcCceec
Q 018243 256 VLVMLDGDHKKAKLLAEGLNQLKGLRVD-VDAVETNIVYFEITEDS--------------KLYAACLLKKL-EEHGVLVM 319 (359)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~~~ 319 (359)
.+..++.++++++.+.+.| |+.+. .++.++.++|+.++.-. ..+..+|+.+| .+.||.+.
T Consensus 405 ~~~~~~~~~~Rr~~l~~~L----g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~ 480 (527)
T PRK09275 405 KKAMKDIIRRRYKALYEGL----GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLL 480 (527)
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEe
Confidence 5556667778888887777 33331 24567888998876310 01466778888 78899998
Q ss_pred cCC-----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 320 PES-----STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 320 ~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
||. ..++|+++. ..+++++.++.++|.++++++..+.
T Consensus 481 PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y~~~~ 522 (527)
T PRK09275 481 PGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEYYEEY 522 (527)
T ss_pred CchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 347999995 4788999999999999999887543
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=228.93 Aligned_cols=311 Identities=20% Similarity=0.205 Sum_probs=217.7
Q ss_pred ccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-EEc-CCchHHH-HHHHHHhhhhcCC
Q 018243 4 RTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-LFV-PSGTMGN-LISVLVHCETRGS 79 (359)
Q Consensus 4 ~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~~~-~~gt~a~-~~~l~~~~~~~g~ 79 (359)
.+|||.++ +...|+|.+.+++.+.......|.. +...++++.++++++.+.. +++ ++|++.. ..++..++ ++|+
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~-~~gd 112 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPE-PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI-DPGD 112 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc-CCCC
Confidence 56899877 4456668888888765443334543 3458999999999998643 444 6776654 45555555 6899
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
.|+++.|+|.. +. ..++..|++++.++.+.++.+|++++++.++ +++++++++++ +||||.+++.
T Consensus 113 ~vlv~~p~y~~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~v~~~~p-~nptG~~~~~--- 177 (361)
T PRK00950 113 EVIIPTPTFSY-YE--ISAKAHGAKPVYAKREEDFSLDVDSVLNAIT--------EKTKVIFLCTP-NNPTGNLIPE--- 177 (361)
T ss_pred EEEEcCCChHH-HH--HHHHHcCCEEEEeecCCCCCcCHHHHHHHhc--------cCCCEEEEeCC-CCCCCCCcCH---
Confidence 99999998655 43 2367789999988877777899999999887 67888888655 6699999994
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EE-EEeccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
+++.++|+++|+++|+|++|.... +.+...+....+ ++ +.|+||.+|.|+- ||+++++++++.++.....++
T Consensus 178 ~~l~~l~~~~~~~li~De~y~~~~----~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~ 253 (361)
T PRK00950 178 EDIRKILESTDALVFVDEAYVEFA----EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFS 253 (361)
T ss_pred HHHHHHHHHCCcEEEEECchhhhC----ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCCC
Confidence 667777888999999999974322 222222222223 44 4599999986542 889999999888776544332
Q ss_pred CCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
.+...+.++..+++ ++.++..++..++++++.+.|. +.+. +..++++|+.++. .+..++.+.|.+
T Consensus 254 ----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~~--~~~~~~i~~~~~~---~~~~~~~~~l~~ 320 (361)
T PRK00950 254 ----LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKVY--PSEANFVLVDVTP---MTAKEFCEELLK 320 (361)
T ss_pred ----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeEC--CCcceEEEEECCC---CCHHHHHHHHHH
Confidence 23444445555553 2333344455555566655554 4442 4578899998843 478899999988
Q ss_pred cCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 314 ~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+||.+.++ ++.++|++++ +.+++++++++|+++++
T Consensus 321 ~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 321 RGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIVE 361 (361)
T ss_pred CCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHhC
Confidence 99998664 2458999984 67899999999988753
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=222.96 Aligned_cols=313 Identities=19% Similarity=0.231 Sum_probs=220.0
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHH-HHHHHHHhhhhcC
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMG-NLISVLVHCETRG 78 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a-~~~~l~~~~~~~g 78 (359)
..++|.++.+.. +++.+.+++.+.... ...|.. +...++++.++++++.+. .+++++|++. +..++..++ ++|
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~-~~g 100 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI-NKG 100 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-CCC
Confidence 457788776664 447888888764432 223443 446899999999998753 4666666654 555666665 699
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
|+|++++|+|.. +. ..++..|++++.++.++++.+|++++++.+++ .++++|++++ ++||||.+++.
T Consensus 101 d~Vlv~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~k~v~l~~-p~NPtG~~~~~-- 167 (351)
T PRK14807 101 DVVIYPHPSFAM-YS--VYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK-------YQPKLVFLCN-PNNPTGSVIER-- 167 (351)
T ss_pred CEEEEeCCChHH-HH--HHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc-------cCCCEEEEeC-CCCCCCCCCCH--
Confidence 999999999764 44 34678899999998877788999999999973 4789999965 56799999995
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEE-EeccccCCCcee--eEEecCHHHHHHHHHHHHhh
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSAS-VCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~ 234 (359)
+++.+++++++.++|+||+|.. +. +....+.. ....+++ .|+||.+|.|+. ||+++++++++.++.....+
T Consensus 168 -~~l~~l~~~~~~~~ivDe~y~~--~~--~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~~ 242 (351)
T PRK14807 168 -EDIIKIIEKSRGIVVVDEAYFE--FY--GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPY 242 (351)
T ss_pred -HHHHHHHHhCCCEEEEeCcchh--hc--ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCCC
Confidence 5555666677788999999632 22 22222221 1223454 499999986543 99999999999887554322
Q ss_pred CCCcchhHHHHHHHHHHHH-HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 235 GGGMRQVGVLCAAALVALQ-ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+. +...+.++...++ ...++.++...++++.+.+.|++++|+.+. +..++++|+.++. .+++.+.|.+
T Consensus 243 --~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~--~~~~~~~~i~~~~-----~~~~~~~l~~ 311 (351)
T PRK14807 243 --NI--NSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVY--PSKTNFILVKFKD-----ADYVYQGLLE 311 (351)
T ss_pred --Cc--CHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--cCCccEEEEEcCC-----HHHHHHHHHH
Confidence 22 3344444444443 233435566777888899999888888763 4468889988863 4678888988
Q ss_pred cCceeccC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPE-----SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 314 ~gi~~~~~-----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+||.+.+. ...++||++. +.++.+++++.|++++
T Consensus 312 ~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 312 RGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred CCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 99998553 2468999984 5788899999987753
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-30 Score=217.14 Aligned_cols=312 Identities=25% Similarity=0.308 Sum_probs=243.6
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccc
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~ 97 (359)
++.++++.+...+.. +..++...++|+.+++++|.++++.++|||.|+..+++++..++||+|+++..+|..+.. .
T Consensus 15 ~~e~~~v~~vl~sg~-i~~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan---~ 90 (374)
T COG0399 15 EEELAAVQEVLKSGW-LTGGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATAN---A 90 (374)
T ss_pred hHHHHHHHHHHHcCC-eecChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHH---H
Confidence 555555555443333 334899999999999999999999999999999999997766799999999999887765 2
Q ss_pred cccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEe
Q 018243 98 STIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID 176 (359)
Q Consensus 98 ~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D 176 (359)
....|+++++++.+ +++.+|++.++++|+ +++|+|+..|.. |...+ +++|.++|++||++||+|
T Consensus 91 i~~~Ga~PVFvDid~~T~nid~~~ie~aIt--------~~tKAIipVhl~----G~~~d---m~~i~~la~~~~l~vIED 155 (374)
T COG0399 91 VLLVGAKPVFVDIDPDTLNIDPDLIEAAIT--------PRTKAIIPVHLA----GQPCD---MDAIMALAKRHGLPVIED 155 (374)
T ss_pred HHHcCCeEEEEecCCcccCCCHHHHHHHcc--------cCCeEEEEehhc----cCCCC---HHHHHHHHHHcCCeEEEE
Confidence 66789999999887 458999999999999 789999987765 45544 899999999999999999
Q ss_pred cccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh--------------hCCCcchh
Q 018243 177 GARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT--------------LGGGMRQV 241 (359)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~ 241 (359)
.||++|... .|.....+. ++-.+++-.+|.+...-||+++. ++++.++++.++.+ .|.++++.
T Consensus 156 aAqa~Ga~y-~gk~vGt~G-d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~ 233 (374)
T COG0399 156 AAQAHGATY-KGKKVGSFG-DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLT 233 (374)
T ss_pred cchhccCee-cCccccccc-ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHH
Confidence 999998764 555545442 45577778889998766766555 78888888766653 45667788
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccc---eE-EEEEeccchHHHHHHHHHHHHhcCce
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVET---NI-VYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
.+.++.++..|+...+ ..++..+.++++.+.|++++++.+...+... .. ..+.++. .+.+.+.+.+.|+++||.
T Consensus 234 ~iqAAigl~QL~~l~~-~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~-~~~~R~~l~~~L~~~gi~ 311 (374)
T COG0399 234 EIQAAIGLAQLERLDE-INERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDE-EGISRDALMESLKEAGVG 311 (374)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecC-CCCCHHHHHHHHHhCCCC
Confidence 8999999999988776 8888999999999999998776653332222 11 2233443 245788999999998775
Q ss_pred e----ccC-----------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 318 V----MPE-----------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 318 ~----~~~-----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
. .|. ....+++++++.++++++++++++|++++.+
T Consensus 312 ~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 312 AVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred ceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 4 221 1235999999999999999999999988754
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-29 Score=224.80 Aligned_cols=323 Identities=19% Similarity=0.164 Sum_probs=224.6
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCC--------CccCCChHHHHHHH----HHHHHhCCCCeE-EcCCchHHHHHHHHHhh
Q 018243 8 LRSDTVTKPTEAMRAAMASAEVDD--------DVLMHDPTAFRLET----EMAKVMGKEAGL-FVPSGTMGNLISVLVHC 74 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~l~~----~la~~~~~~~~~-~~~~gt~a~~~~l~~~~ 74 (359)
+.|+|+. +|.+++++....... ..++..+...++|+ .+++++|.+.++ +++||+.|+..++.+++
T Consensus 34 ~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~ 111 (416)
T PRK13034 34 IASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL 111 (416)
T ss_pred cccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc
Confidence 4455554 688888887764221 12333678899998 999999999985 46899999999999997
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccc--eeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHP--RTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++||+|+++...|.+.+..+......+... +.++.+ .++.+|++++++.++. .++++|+++.+. +|
T Consensus 112 -~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-------~~~klVi~~~~~---~g 180 (416)
T PRK13034 112 -KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE-------HKPKLIIAGFSA---YP 180 (416)
T ss_pred -CCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh-------cCCeEEEECCCc---cc
Confidence 599999999999988544342222223222 234332 3466899999999863 357788774322 35
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH-HHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK-EFIKKARRL 230 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~-~~~~~~~~~ 230 (359)
+..+ +.+|.++|++||+++++|++|++|... .+....++ ..+|++++|+||++++|.||++++++ .+.+.++..
T Consensus 181 ~~~d---l~~l~~la~~~g~~livD~Aha~G~~~-~g~~~~~~-~~~Di~~~s~~K~l~g~~GG~v~~~~~~~~~~~~~~ 255 (416)
T PRK13034 181 RELD---FARFREIADEVGALLMVDMAHIAGLVA-AGEHPNPF-PHAHVVTTTTHKTLRGPRGGMILTNDEEIAKKINSA 255 (416)
T ss_pred cccC---HHHHHHHHHHcCCEEEEeCcccccCcc-cCCCCCCC-CCceEEEEeCcccCCCCCCeEEEECcHHHHHHHHhh
Confidence 6555 899999999999999999999988775 33333333 36899999999999778888777654 444444332
Q ss_pred HHhhCCC-cchhHHHHHHHHHHHHHh----HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 231 RKTLGGG-MRQVGVLCAAALVALQEN----VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 231 ~~~~~~~-~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
.+.+.. ...++.. +++..++.+. ..+++++..++.++|++.|++. |+.+..+...++++++.+.. .+....
T Consensus 256 -~~~~~~~~~~~~~~-aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~-~~~~~~ 331 (416)
T PRK13034 256 -VFPGLQGGPLMHVI-AAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRP-KGLSGK 331 (416)
T ss_pred -cCCcccCCccHHHH-HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCC-CCCCHH
Confidence 111211 1122233 3333333222 1235678889999999999999 99875333477888888765 234667
Q ss_pred HHHHHHHhcCceecc----------CCCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVMP----------ESSTRVRIVVHH----QISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 306 ~~~~~l~~~gi~~~~----------~~~~~lRi~~~~----~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+.+.|+++||.+.. ..+..+|++++. .++++|++++++.|++++.+
T Consensus 332 ~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 332 DAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 787899999998842 234579999877 78899999999999988874
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-30 Score=226.96 Aligned_cols=309 Identities=19% Similarity=0.183 Sum_probs=216.4
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHH-HHh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISV-LVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l-~~~ 73 (359)
..+||+.+++..|. +.+.+++.+.. ....|....+..++++.+++++ |.+ ..+++++|++..+..+ ..+
T Consensus 28 ~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l 106 (364)
T PRK07865 28 GIVDLSVGTPVDPVPPVIQEALAAAA-DAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLL 106 (364)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHH-hhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHH
Confidence 46899998776554 77778876643 2345777777889999999987 432 2466777665555444 444
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
..++|+.|++++|+|..... .+...|++++.++ +.++ +.. .++++|+++ +++||||.+
T Consensus 107 ~~~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~-------~~~~----l~~-------~~~~~v~~~-~p~NPtG~~ 164 (364)
T PRK07865 107 GLGPGDVVVIPELAYPTYEV---GARLAGATVVRAD-------SLTE----LGP-------QRPALIWLN-SPSNPTGRV 164 (364)
T ss_pred cCCCCCEEEECCCCcccHHH---HHHhcCCEEEecC-------Chhh----CCc-------ccceEEEEc-CCCCCCCcc
Confidence 13699999999999866443 3677888887773 2222 221 467899986 466799999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-----C-cc-EEEEeccccCCCcee--eEEecCHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-----A-AD-SASVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-----~-~d-~~~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
++.+++++|.++|+++|++||+||+|..... .+.....+.. . .. +++.|+||.||.|+. ||++++++++
T Consensus 165 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~ 242 (364)
T PRK07865 165 LGVDHLRKVVAWARERGAVVASDECYLELGW--DAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALV 242 (364)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecchhhhcc--CCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHH
Confidence 9999999999999999999999999754222 2211111110 1 12 444599999976543 8999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
+.++......+.+. +...+.++...++ ...++.++.+.++++.+.+.|++. |+.+.. +..+.++|+.+..
T Consensus 243 ~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~---- 314 (364)
T PRK07865 243 AELLEVRKHAGMMV--PAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFRVDH-SEAGLYLWATRGE---- 314 (364)
T ss_pred HHHHHHHHhcCCCc--CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccC-CCccEEEEEeCCC----
Confidence 99887665555444 3344444444453 344446667788899999999987 877643 4466678888754
Q ss_pred HHHHHHHHHHhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+..++.+.|.++||.+.|+ ...++||+++ .+++++++++++|+
T Consensus 315 ~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~ 363 (364)
T PRK07865 315 DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA 363 (364)
T ss_pred CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence 4567788899999999764 2468999996 46899999998874
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=220.13 Aligned_cols=335 Identities=19% Similarity=0.242 Sum_probs=249.9
Q ss_pred cccccCCCCCChHHHHHHH-HHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKPTEAMRAA-MASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|||.||+.+ +++.++ +.....++..|+.++...+||+.+++++|.++++.++||+.|+..+. .+..++||.|
T Consensus 40 ~iDLltDsgT---~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~-~l~l~pGDeV-- 113 (450)
T TIGR02618 40 YIDLLTDSGT---NAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLS-QIAIKPGDYV-- 113 (450)
T ss_pred EEEcccCCCc---HHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHH-HhCCCCcCEE--
Confidence 5899999888 555555 55555577789999999999999999999999999999999987654 4444699976
Q ss_pred cCCCcceeeccccccccCCccceeeec----------CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKN----------NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+.++|+.... +.....|+.++.++. +.+|.+|+++|++.++... ..++++|.++++.|..+|.+
T Consensus 114 psn~~f~Tt~--ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~----~~~~~lV~~e~t~N~~GG~p 187 (450)
T TIGR02618 114 PGNMYFTTTR--YHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG----ADKIPYICLAVTVNLAGGQP 187 (450)
T ss_pred CCceeHHHHH--HHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhcccc----CcccCceEEEEecccCCCee
Confidence 6788777766 335667775555532 3468899999999998411 12456778878888778999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccch-hh-------hcCchh----HhhhcCccEEEEeccccCCCceeeEEe-cC
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNA-AV-------ALGVPV----RRLVQAADSASVCLSKGLGAPVGSVIV-GS 220 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~-~~-------~~~~~~----~~~~~~~d~~~~s~~K~~g~~~gg~~~-~~ 220 (359)
+|.++++++.++|++||+.+|.|+|+.++. .. +.+.+. .++...+|.+++|.+|.++.|.||+++ .+
T Consensus 188 vs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d 267 (450)
T TIGR02618 188 VSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMND 267 (450)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCC
Confidence 999999999999999999999999998843 22 345555 344568999999999999999998888 68
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHH----HHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 221 KEFIKKARRLRKTLGGGMRQVGVLCAAA----LVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
+++.++++.....++ ++.+.+.++... ..++++..+ ...+....+.++|.+.|.+. |+.+.. |.+++.+++.
T Consensus 268 ~~l~~k~r~~~~~~e-G~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~-Gvpv~~-p~ggh~V~vd 344 (450)
T TIGR02618 268 DEMFQSAKELVVVFE-GMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA-GVPIVE-PVGGHAVFLD 344 (450)
T ss_pred HHHHHHHHHHhhhcC-CccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCcceEEEE
Confidence 999999988876663 333333333323 345555444 34444556799999999999 998843 5688888886
Q ss_pred ecc------chHHHHHHHHHHH-HhcCceeccC-----------------CCcEEEEEe-CCCCCHHHHHHHHHHHHHHH
Q 018243 296 ITE------DSKLYAACLLKKL-EEHGVLVMPE-----------------SSTRVRIVV-HHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 296 ~~~------~~~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~ 350 (359)
... .....+..+..+| .+.||..+.- .-..+|+.+ .-..|.++++.+++++..+.
T Consensus 345 a~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~ 424 (450)
T TIGR02618 345 ARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLY 424 (450)
T ss_pred hHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHH
Confidence 532 1234677888888 8888876321 024589874 33468899999999999888
Q ss_pred HHHH
Q 018243 351 AGVC 354 (359)
Q Consensus 351 ~~~~ 354 (359)
++-.
T Consensus 425 ~~~~ 428 (450)
T TIGR02618 425 KHRD 428 (450)
T ss_pred hhHh
Confidence 7654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-30 Score=224.84 Aligned_cols=322 Identities=22% Similarity=0.240 Sum_probs=230.3
Q ss_pred ccccCCCCCC-hHHHHHHHHHc--CCCCCCccCCChHHHHHHHHHHHHhCCC--------CeEEcCCchHHHHHHHHHhh
Q 018243 6 VDLRSDTVTK-PTEAMRAAMAS--AEVDDDVLMHDPTAFRLETEMAKVMGKE--------AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 6 id~~~~~~~~-~~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~la~~~~~~--------~~~~~~~gt~a~~~~l~~~~ 74 (359)
|||..+.+.. ++|.+..++.+ .......|...+...++++.++++++.. ..++++||++++..++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC
Confidence 4666665543 33666666653 2223445677788899999999998754 24677778888888888887
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCH--HHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDI--DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++|++|+++.++|.+... .++..|.+++.++.++++..+. +.++...+ +++++|++++ ++||||.
T Consensus 81 -~~g~~vl~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~v~i~~-~~~~tG~ 147 (350)
T cd00609 81 -NPGDEVLVPDPTYPGYEA---AARLAGAEVVPVPLDEEGGFLLDLELLEAAKT--------PKTKLLYLNN-PNNPTGA 147 (350)
T ss_pred -CCCCEEEEcCCCchhHHH---HHHHCCCEEEEEecccccCCccCHHHHHhhcC--------ccceEEEEEC-CCCCCCc
Confidence 589999999999988665 3677788998898877766554 55665554 7899999977 7779999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCC-cee-eEEecCH-HHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGA-PVG-SVIVGSK-EFIKKA 227 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~-~~g-g~~~~~~-~~~~~~ 227 (359)
.+|.+++.+|.++|+++|+++|+|++|+.+........ ......+.|+++.|++|+++. +.+ |+++.++ ++.+.+
T Consensus 148 ~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~ 227 (350)
T cd00609 148 VLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERL 227 (350)
T ss_pred ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHH
Confidence 99999999999999999999999999765443211111 111112456777899999973 333 8888887 788888
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+........+. +...+.+....++ +..+...++..++++++.+.|++.+...+ ..+..+.++|+.++.. .+.
T Consensus 228 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~g~~~~~~~~~~--~~~ 302 (350)
T cd00609 228 KKLLPYTTSGP--STLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVV-VKPSGGFFLWLDLPEG--DDE 302 (350)
T ss_pred HHHHHhcccCC--ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCccEEEEEecCCC--ChH
Confidence 76655543333 2233333444443 23444666788899999999999844443 2345788889888762 245
Q ss_pred HHHHHHHHhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
..+.+.|.++||.+.++ +..++|++++.. ++|+++++++|+
T Consensus 303 ~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 303 EFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred HHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 56777778899999776 567899999744 999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=223.56 Aligned_cols=317 Identities=17% Similarity=0.261 Sum_probs=222.1
Q ss_pred HHHHHHHHcCCCCCC---------ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 18 EAMRAAMASAEVDDD---------VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
|++.+++.+.-.+.. ....++...++++.+++++|.+..++++||++++..++..++ ++|++|++++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~-~~gd~Vl~~~~~~ 93 (361)
T cd06452 15 PEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLC-EKGDWVVVDGLAH 93 (361)
T ss_pred HHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCcc
Confidence 888888877542211 112246788999999999999777888888889998888887 5999999999999
Q ss_pred ceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 89 IHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
++.+. . +...|++++.++.+.+ +.+|++++++.+++..+. ..+++++|+++++ +||||...+ +++|.++|
T Consensus 94 ~~~~~-~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~~lv~l~~p-~n~tG~~~~---~~~i~~~~ 165 (361)
T cd06452 94 YTSYV-A--AERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDE-FGKPPALALLTHV-DGNYGNLHD---AKKIAKVC 165 (361)
T ss_pred hHHHH-H--HHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhc-cCCCceEEEEECC-CCCCeeecc---HHHHHHHH
Confidence 98875 2 6778999999977654 488999999988631100 0036889999665 569998765 89999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhh--------CCC
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTL--------GGG 237 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~--------~~~ 237 (359)
+++|+++|+|++|+++... .....+ +.|+++.|+||++++|.+ |+++++++++++++.....+ +.+
T Consensus 166 ~~~~~~vivD~a~~~g~~~---~~~~~~--~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 240 (361)
T cd06452 166 HEYGVPLLLNGAYTVGRMP---VSGKEL--GADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCT 240 (361)
T ss_pred HHcCCeEEEECCcccCCcC---CCHHHc--CCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccc
Confidence 9999999999998765432 222222 689999999999986655 88999999888876544321 122
Q ss_pred cchhHHHHHH-HHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEec-CCccceEEEEEeccch------HHHHHHHHH
Q 018243 238 MRQVGVLCAA-ALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV-DAVETNIVYFEITEDS------KLYAACLLK 309 (359)
Q Consensus 238 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~ 309 (359)
....+..... ++..+.+..+ ...+..++++++++.|+++||+++.. .+...+++.+..+.-. ...+.++.+
T Consensus 241 ~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (361)
T cd06452 241 LRGAPLVTLMASFPHVKERVK-RWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYS 319 (361)
T ss_pred cCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHH
Confidence 2111121111 1222223333 34444556789999999998998753 2345667766654200 012346999
Q ss_pred HHHhcCceecc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 310 KLEEHGVLVMP-ESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 310 ~l~~~gi~~~~-~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+|.++||.+.. +...++|++.. ..++++++.++++|+++.
T Consensus 320 ~L~~~gI~~~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 320 ELKKRGIHGIKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred HHHHcCceEEcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 99889999743 34457888874 579999999999998664
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-30 Score=225.37 Aligned_cols=312 Identities=18% Similarity=0.168 Sum_probs=216.8
Q ss_pred ccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~~ 80 (359)
..|||..+ +...|+|.+.+++.+.......|. .++..++++.++++++.+. .+++++|+ +++..++.+++ ++||.
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~-~~gd~ 108 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML-DPGDT 108 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCCCE
Confidence 46889887 444666888888877543334454 3567899999999998764 35555555 56666666666 69999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
|++++|+|.. +. ......|..++.++.+ +++.++.+++.+..+ ++++|+++ .+|||||.+++.++
T Consensus 109 V~v~~P~y~~-~~--~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~k~i~l~-~p~NPTG~~~s~~~ 175 (357)
T PRK14809 109 VLVPDPGFAY-YG--MSARYHHGEVREYPVSKADDFEQTADTVLDAYD---------GERIVYLT-SPHNPTGSEIPLDE 175 (357)
T ss_pred EEEeCCChHH-HH--HHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc---------CCcEEEEe-CCCCCCCcCCCHHH
Confidence 9999999654 33 2356677788877654 345667777666543 46788886 56679999999999
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
+.+++++|++ +++||+||+|..... .+.....+.....++++ |+||.||.|+. ||+++++++++.+......
T Consensus 176 ~~~l~~~~~~-~~~iI~De~y~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~-- 250 (357)
T PRK14809 176 VEALAERTDE-ETLVVVDEAYGEFAE--RPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTP-- 250 (357)
T ss_pred HHHHHHhCcc-CcEEEEechhhhccC--CchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCCC--
Confidence 9999998875 789999999654322 22112222212235554 99999986544 9999999998887765322
Q ss_pred CCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
...+...+.++...+ ..+.++.++.+.++++.+.+.|... . . +..++++|+.++ +..++.+.|.+
T Consensus 251 --~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~---~--~~~g~f~~~~~~-----~~~~~~~~l~~ 317 (357)
T PRK14809 251 --FAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-T---W--ESAGNFVLAEVG-----DASAVAEAAQE 317 (357)
T ss_pred --CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc-c---C--CCCCCEEEEECC-----CHHHHHHHHHH
Confidence 222344445555555 3444445556667777788887653 2 1 357889999874 35678888999
Q ss_pred cCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 314 ~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+||.+.++. .+++|+++. +.+++++++++|+++++
T Consensus 318 ~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 318 RGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred CCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 999997764 457999984 47899999999998764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-30 Score=228.11 Aligned_cols=327 Identities=18% Similarity=0.214 Sum_probs=224.5
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCC----C-ccCC----ChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhh
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDD----D-VLMH----DPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~----~-~~~~----~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~ 74 (359)
+.|++...+.+++.+.+++.+..... . .+.. .....++++.+++++|.+. .++++|||+++..++..+.
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~ 80 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSAL 80 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence 35666666666678888887643211 1 1111 2335788899999999874 4777889999998888764
Q ss_pred h--hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 75 E--TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 75 ~--~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
. .+++.|+++..+|.+........+..|.+++.++.+.++.+|++++++.++ +++++++++++ +||||.
T Consensus 81 ~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~--------~~~~lv~i~~~-~n~tG~ 151 (379)
T TIGR03402 81 AAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT--------DDTALVSVMWA-NNETGT 151 (379)
T ss_pred HhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC--------CCcEEEEEEcc-cCCeee
Confidence 2 356789999989877543111233468899988877788899999999998 67889988665 459999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR 231 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~ 231 (359)
..| +++|.++|+++|+++++|++|++|... ..... .++|++++|.||. ++|.| |+++.+++.. +....
T Consensus 152 ~~~---~~~I~~l~~~~g~~vivD~~~~~g~~~---~~~~~--~~~D~~~~s~~K~-~gp~G~g~l~v~~~~~--~~p~~ 220 (379)
T TIGR03402 152 IFP---IEEIGEIAKERGALFHTDAVQAVGKIP---IDLKE--MNIDMLSLSGHKL-HGPKGVGALYIRKGTR--FRPLL 220 (379)
T ss_pred ccc---HHHHHHHHHHcCCEEEEECcccccccc---cCccc--CCCCEEEEcHHHc-CCCCceEEEEECCCCC--CCCcc
Confidence 998 688999999999999999998765432 22222 3789999999995 45777 8777765431 11000
Q ss_pred -------HhhCCCcchhHHHHHH-HHHHHHHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCc-c-ceEEEEEeccch
Q 018243 232 -------KTLGGGMRQVGVLCAA-ALVALQENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAV-E-TNIVYFEITEDS 300 (359)
Q Consensus 232 -------~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~-~-~~~~~~~~~~~~ 300 (359)
....++.....+.+.. +...+....+...++..++++++.+.|++ +|++.+..++. . ...+.+.++.
T Consensus 221 ~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 298 (379)
T TIGR03402 221 RGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY-- 298 (379)
T ss_pred cCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecC--
Confidence 0011122222222111 12222334444556777888899999986 88888754322 1 2345555554
Q ss_pred HHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 301 KLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 301 ~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+..++.+.|.++||.+..+. .+.+|++++..++++|++++++.|+++++++.+
T Consensus 299 -~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 299 -IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred -CCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999986542 357999999999999999999999999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=223.98 Aligned_cols=312 Identities=18% Similarity=0.131 Sum_probs=224.5
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCC
Q 018243 9 RSDTVTKPTEAMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~ 86 (359)
.++++.++..+..+++.+.......|+ ..|...+|++.+++++|.+.+++++||+.|+..++.+++ ++||+|+++.+
T Consensus 30 ~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~ 108 (386)
T PRK06767 30 QTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFL-KAGDHIICSNG 108 (386)
T ss_pred CccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCC
Confidence 344555566555555544332344455 467789999999999999999999999999988888887 69999999999
Q ss_pred Ccceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 87 SHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 87 ~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
.|.+.+... ......|+++..++. .|++++++.++ +++++|++++++| |||.+.+ +++|.++
T Consensus 109 ~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~--------~~tklV~lesp~N-ptG~v~d---l~~I~~l 171 (386)
T PRK06767 109 LYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIR--------PNTKLIFVETPIN-PTMKLID---LKQVIRV 171 (386)
T ss_pred cHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhC--------cCceEEEEeCCCC-CCceecC---HHHHHHH
Confidence 887665310 112234544444433 28899999988 7899999976655 9999988 7999999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHHHHH-HHHHhhCCCcchh
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKAR-RLRKTLGGGMRQV 241 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~-~~~~~~~~~~~~~ 241 (359)
|+++|+++|+|++|+.+.. .. ++..++|+++.|++|+++++. ||+++++++.++++. ......+..+ +
T Consensus 172 a~~~g~~vivD~a~a~~~~---~~---pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~--~ 243 (386)
T PRK06767 172 AKRNGLLVIVDNTFCSPYL---QR---PLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIM--A 243 (386)
T ss_pred HHHcCCEEEEECCCccccc---CC---chhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCC--C
Confidence 9999999999999643221 22 233478999999999997754 688999888777653 4444455544 4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceE-ecC---------CccceEEEEEeccchHHHHHHHHHHH
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV-DVD---------AVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
+..++++..+++.... ++++..+++.++.+.|+++|+++. ..| +..+.++.|.++. ...+..+|.+.|
T Consensus 244 ~~~a~l~~~~L~tl~~-r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~-~~~~~~~f~~~l 321 (386)
T PRK06767 244 PFDAWLLLRGLKTLAV-RMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG-GKEETQAFINDL 321 (386)
T ss_pred HHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC-CHHHHHHHHHhC
Confidence 5556666666665544 788899999999999999999874 322 2346778888864 234678899999
Q ss_pred HhcCceeccC---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 312 EEHGVLVMPE---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 312 ~~~gi~~~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+..++.+.-| ..+.+|+++. + |+.+.+++-|.++++.
T Consensus 322 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG--l--E~~~dl~~dl~~al~~ 385 (386)
T PRK06767 322 HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVG--L--ESWEDIVSDLEQALKK 385 (386)
T ss_pred CccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHhh
Confidence 8777655222 2346999985 3 5788888888887764
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-30 Score=228.63 Aligned_cols=320 Identities=17% Similarity=0.184 Sum_probs=222.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC-----CccCCC----hHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD-----DVLMHD----PTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~----~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~ 73 (359)
.++|.+.....+++.+++++.+..... ..|... +...++++.+++++|.+. .++++|+++++..++.++
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~ 97 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 578888888878888888887643211 123222 345799999999999864 355566666665555554
Q ss_pred --hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 74 --CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 74 --~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
..++|++|+++++.|++.+... ..++..|++++.++.+. ++.+|++++++.++ +++++|+++++.| |
T Consensus 98 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~--------~~~~lv~i~~~~n-~ 168 (397)
T TIGR01976 98 SRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS--------PRTRLVAVTAASN-T 168 (397)
T ss_pred HhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC--------CCceEEEEeCCCC-C
Confidence 2358999999999998765311 12466798999887764 67899999999998 6789999966554 9
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
||...+ +++|.++|+++|+++++|++|..+.. ...... .++|++++|+||++|.+ .|+++.++++++.+..
T Consensus 169 tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~---~~~~~~--~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~ 239 (397)
T TIGR01976 169 LGSIVD---LAAITELVHAAGALVVVDAVHYAPHG---LIDVQA--TGADFLTCSAYKFFGPH-MGILWGRPELLMNLPP 239 (397)
T ss_pred CCccCC---HHHHHHHHHHcCCEEEEehhhhcccc---CCCHHH--cCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCC
Confidence 999887 89999999999999999999854321 122222 37899999999999854 6778888888777553
Q ss_pred HHHhhC---------CCcchhHHHHHHHHHHHHHh------------------HHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 230 LRKTLG---------GGMRQVGVLCAAALVALQEN------------------VLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 230 ~~~~~~---------~~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
....+. .++. +....++...+++.. .+...++..+.++++++.|++++++++
T Consensus 240 ~~~~~~~~~~~~~~~~gt~-~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 318 (397)
T TIGR01976 240 YKLTFSYDTGPERFELGTP-QYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL 318 (397)
T ss_pred ccccCccCCCcchhcCCCC-CHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 322111 1111 111112222222211 222445556778889999998867887
Q ss_pred ecC---CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---------------CCcEEEEEeCCCCCHHHHHHHHH
Q 018243 283 DVD---AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE---------------SSTRVRIVVHHQISANDVHYTLS 344 (359)
Q Consensus 283 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------~~~~lRi~~~~~~~~~~i~~~~~ 344 (359)
..+ ...++++.+.++. .+..++.++|.++||.+..+ ...++|++++..++++|++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~ 395 (397)
T TIGR01976 319 YGVARLAARVPTVSFTVHG---LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLE 395 (397)
T ss_pred eCCCCccCCCceEEEEeCC---cCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHH
Confidence 543 2356777777654 36778999999999998644 24579999999999999999998
Q ss_pred HH
Q 018243 345 CF 346 (359)
Q Consensus 345 ~l 346 (359)
.|
T Consensus 396 ~l 397 (397)
T TIGR01976 396 AL 397 (397)
T ss_pred hC
Confidence 64
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-30 Score=227.44 Aligned_cols=323 Identities=15% Similarity=0.112 Sum_probs=218.2
Q ss_pred cccccccCCCC---CCh---HHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhCCCC-------eEE---cCCchH
Q 018243 3 TRTVDLRSDTV---TKP---TEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMGKEA-------GLF---VPSGTM 64 (359)
Q Consensus 3 ~~~id~~~~~~---~~~---~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~~-------~~~---~~~gt~ 64 (359)
+..|||+.+.+ ..| .+.+.+++.+... ....|+...+..++|+++++++.... .++ +.+|++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~ 108 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG 108 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence 45688888763 221 2556666544322 23468888899999999999873221 243 666667
Q ss_pred HHHHHHH---HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 65 GNLISVL---VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 65 a~~~~l~---~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
|+..++. .++ ++||.|++++|+|.... ..++..|++++.++.. +++.+|++.+++.+++.. +++++
T Consensus 109 al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~---~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~-----~~~~~ 179 (404)
T PTZ00376 109 ALRLGFEFLKRFL-PAGTTVYVSNPTWPNHV---NIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAP-----NGSVV 179 (404)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEcCCCchhHH---HHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCC-----CCCEE
Confidence 7666654 344 69999999999977654 3488899999999862 457899999999986420 23455
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh---cCchhHhhhcCc-cEEE-EeccccCCCcee
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA---LGVPVRRLVQAA-DSAS-VCLSKGLGAPVG 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~~~~-d~~~-~s~~K~~g~~~g 214 (359)
+++ +++|||||.+++.+++++|.++|++||++||+||+|....... ...+...+.... .+++ .|+||.|+.++.
T Consensus 180 ~~~-~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl 258 (404)
T PTZ00376 180 LLH-ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGE 258 (404)
T ss_pred EEe-CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccc
Confidence 555 7778899999999999999999999999999999964322210 011222222222 3554 499999996544
Q ss_pred --eEE---ecCHHHHHHHH-HHH---HhhCCCcchhHHHHHHHHHHHHH------h---HHHHhhhHHHHHHHHHHHHhc
Q 018243 215 --SVI---VGSKEFIKKAR-RLR---KTLGGGMRQVGVLCAAALVALQE------N---VLVMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 215 --g~~---~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~------~---~~~~~~~~~~~~~~l~~~l~~ 276 (359)
||+ +.++++.+.+. .+. .....+. +.+.+.++...+++ + .++.++++.++++.+.+.|++
T Consensus 259 RvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 336 (404)
T PTZ00376 259 RIGALHIVCANKEEAANVLSQLKLIIRPMYSSP--PIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA 336 (404)
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCC--chHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776 57887665543 222 2211221 23344444444421 1 223455677889999999998
Q ss_pred CCC----ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 277 LKG----LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 277 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
. + +.+. .+.++.++|+.++. +++++| .++||.+.|++ |++++ ..+.++++.++++|++++.
T Consensus 337 ~-~~~~~~~~~-~p~gg~f~~~~~~~-------~~~~~L~~~~~v~v~p~~----Ris~~-~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 337 L-GSPGDWEHI-INQIGMFSFTGLTK-------EQVERLIEKYHIYLLDNG----RISVA-GLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred c-CCCCccccc-ccCceEEEecCCCH-------HHHHHHHHhCCEeecCCC----eEEEe-ccCHHhHHHHHHHHHHHHh
Confidence 7 4 3332 35678889988753 677788 56699998884 99995 4899999999999998865
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=223.30 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=216.0
Q ss_pred cccccCCCCC-ChHHHHHHHHHcCCC----CCCccCCChHHHHHHHHHHHHh----CC--C-CeEEcCCchH-HHHHHHH
Q 018243 5 TVDLRSDTVT-KPTEAMRAAMASAEV----DDDVLMHDPTAFRLETEMAKVM----GK--E-AGLFVPSGTM-GNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~-~~~~~~~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~----~~--~-~~~~~~~gt~-a~~~~l~ 71 (359)
.+||+.+.+. .|++.+.+++.+... ....|. .++...+++.+++++ |. + ..+++++|++ ++..++.
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~ 106 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQ 106 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHH
Confidence 4778877655 455888888876532 223453 356789999999998 32 2 2366666655 5555555
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+++ ++||.|+++.|+|.. +. ..+...|.+++.++.++++.+|++.+++.+++ .++++|++++ ++||||
T Consensus 107 ~~~-~~gd~v~v~~P~y~~-~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~~i~l~~-p~NPtG 174 (368)
T PRK03317 107 AFG-GPGRTALGFVPSYSM-HP--IIARGTHTEWVEGPRAADFTLDVDAAVAAIAE-------HRPDVVFLTS-PNNPTG 174 (368)
T ss_pred Hhc-CCCCEEEEeCCChHH-HH--HHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc-------cCCCEEEEeC-CCCCCC
Confidence 555 699999999999765 44 33667788888887666788999999999874 4678888865 567999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc-hhHhhh-cCccEEEE-eccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV-PVRRLV-QAADSASV-CLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~~~~~~-~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|+++| +++||+||+|.... +.+. +...+. ...+++++ |+||.+|.++- ||+++++++++.
T Consensus 175 ~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~--~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~ 249 (368)
T PRK03317 175 TALPLDDVEAILDAA---PGIVVVDEAYAEFR--RSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDA 249 (368)
T ss_pred CCCCHHHHHHHHHHC---CceEEEeCCchhhc--ccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHH
Confidence 999976666665555 79999999975422 1221 222221 22355555 99999986432 889999999988
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE-EEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI-VYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (359)
++..... +..+.+.+.++..+++.. ..+.++++.++++.+.+.|++. |+.+. ++ .+++ +|..+. +
T Consensus 250 l~~~~~~----~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~-~~~~~~~~~~~-----~ 317 (368)
T PRK03317 250 LRLVRLP----YHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVA-PS-DANFVLFGRFA-----D 317 (368)
T ss_pred HHhcCCC----CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-CC-CCcEEEEeccC-----C
Confidence 7754422 223445555555555321 1224556677788889999887 88764 33 4444 443432 4
Q ss_pred HHHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..++.+.|.++||.+.+.+ ..++|++++ +.+++++++++|+++++.
T Consensus 318 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~---~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 318 RHAVWQGLLDRGVLIRDVGIPGWLRVTIG---TPEENDAFLAALAEVLAT 364 (368)
T ss_pred HHHHHHHHHHCCEEEEeCCCCCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 5688899989999997754 478999984 678999999999988753
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=227.16 Aligned_cols=333 Identities=16% Similarity=0.130 Sum_probs=217.2
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHH-HHhC-------CC----CeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMA-KVMG-------KE----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la-~~~~-------~~----~~~~~~~gt~a~~~~l~ 71 (359)
..|+|..+.+..+.+++..++.+...+. .|....+...++++++ +++. .+ ..+++.|+++|+..++.
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~ 173 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFD 173 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 4688888888777766667666654444 3544444444444444 4432 12 23455566677777776
Q ss_pred Hh----hhhcCCeEEecCCCcceeecccccccc--CCccceeeecCC--C-----CCCCHHHHHHHhcCCCCCccCCcee
Q 018243 72 VH----CETRGSEVILGDNSHIHIYENGGISTI--GGVHPRTVKNNQ--D-----GTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 72 ~~----~~~~g~~vl~~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~--~-----~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
++ +..+||+|+++.|+|..... .+.+ .|.+++.++.+. + +.+|.+++++.++ ++++
T Consensus 174 ~l~~~~ll~pGD~Vlv~~P~y~~y~~---~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~--------~~~k 242 (521)
T TIGR03801 174 SLKANELLKKGDKIALMTPIFTPYLE---IPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD--------PSIK 242 (521)
T ss_pred HHhHhhcCCCCCEEEEeCCCcHHHHH---HHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC--------CCCc
Confidence 62 23699999999999776543 2444 366777775432 2 7789999998777 7899
Q ss_pred EEEEeccccCCCceecChhhHHHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--
Q 018243 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-- 214 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-- 214 (359)
+|++++| +||||.+++.+++++|+++|++| +++||+||+|.. +.....+........-+++.|+||.||.++.
T Consensus 243 ai~l~nP-~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~--f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~Rl 319 (521)
T TIGR03801 243 ALFVVNP-SNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGT--FVDDFRSLFAELPYNTIGVYSFSKYFGATGWRL 319 (521)
T ss_pred EEEEeCC-CCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchh--hcccccchhhhCCCCEEEEEcchhhccCchhhh
Confidence 9999654 57999999999999999999987 999999999643 2222223323211112444599999998766
Q ss_pred eEEecCHH-----HHH--------HH------------------------HHHHHhhCCCcchhHHHHHH--H-HHHH--
Q 018243 215 SVIVGSKE-----FIK--------KA------------------------RRLRKTLGGGMRQVGVLCAA--A-LVAL-- 252 (359)
Q Consensus 215 g~~~~~~~-----~~~--------~~------------------------~~~~~~~~~~~~~~~~~~~~--~-~~~l-- 252 (359)
||++.+++ +++ .+ +........+.+.+.+.+.+ + ...+
T Consensus 320 G~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~ 399 (521)
T TIGR03801 320 GTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK 399 (521)
T ss_pred hhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc
Confidence 88888654 221 11 22233333333333333222 2 2222
Q ss_pred -HHhHHHHhhhHHHHHHHHHHHHhcCCCceEe-cCCccceEEEEEeccchH--------------HHHHHHHHHH-HhcC
Q 018243 253 -QENVLVMLDGDHKKAKLLAEGLNQLKGLRVD-VDAVETNIVYFEITEDSK--------------LYAACLLKKL-EEHG 315 (359)
Q Consensus 253 -~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l-~~~g 315 (359)
+...++.++.++++++.+.+.| |+.+. .++.++.++|+.++.-.. .+..+++.+| .++|
T Consensus 400 ~~~y~~~~~~~~~~R~~~l~~~L----g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~g 475 (521)
T TIGR03801 400 ENAYKAETKDICRRREKLLFRGL----GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETG 475 (521)
T ss_pred chhHHHHHHHHHHHHHHHHHHhc----CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCC
Confidence 2344445667777777877777 44432 245577889998874100 1356778888 7889
Q ss_pred ceeccCC-----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 316 VLVMPES-----STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 316 i~~~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
|.+.||. ..++|+++. ..+++++.++.++|+++++++..+
T Consensus 476 V~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~~~~~ 520 (521)
T TIGR03801 476 IVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDEYYEA 520 (521)
T ss_pred EEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9998873 346999995 478999999999999999888654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=223.27 Aligned_cols=308 Identities=20% Similarity=0.188 Sum_probs=213.3
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCc-hHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSG-TMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~g-t~a~~~~l~~~ 73 (359)
..+||.++++..| .+.+.+++.+.. ....|....+..++++++++++ |.+ ..+++++| ++++..++..+
T Consensus 22 ~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l 100 (357)
T TIGR03539 22 GIVDLSVGTPVDPVPPLIRAALAAAA-DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLL 100 (357)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHH-hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHH
Confidence 3589998876554 477777776543 3345766677889999998887 432 23555555 55555555555
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
..++||.|++++|+|..... .+...|++++.++ +.+. ++. .++++|++++ ++||||.+
T Consensus 101 ~~~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~v~-------~~~~----l~~-------~~~~~v~~~~-p~NPtG~~ 158 (357)
T TIGR03539 101 GLGPGDTVVIPELAYPTYEV---GALLAGATPVAAD-------DPTE----LDP-------VGPDLIWLNS-PGNPTGRV 158 (357)
T ss_pred cCCCCCEEEECCCCcHHHHH---HHHhcCCEEeccC-------Chhh----cCc-------cCccEEEEeC-CCCCcCcc
Confidence 24699999999999866443 3667788877763 3222 322 5788999865 66699999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-----Cc-cEE-EEeccccCCCcee--eEEecCHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-----AA-DSA-SVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-----~~-d~~-~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
++.+++++|.++|+++|++||+||+|.... +.+.....+.. .. .++ +.|+||.|+.++. ||++++++++
T Consensus 159 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~ 236 (357)
T TIGR03539 159 LSVDELRAIVAWARERGAVVASDECYLELG--WEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALV 236 (357)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEecchhhhc--cCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHH
Confidence 999999999999999999999999964322 22221111110 11 234 4499999976543 8999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
+.++..+...+.+. +...+.++...+ ..+.+..++.+.++++.+.+.|++. |+.+. ++..+.++|+.++.
T Consensus 237 ~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~-~p~~~~~~~~~~~~---- 308 (357)
T TIGR03539 237 AELLTVRKHAGLMV--PAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFRID-HSEAGLYLWATRGE---- 308 (357)
T ss_pred HHHHHHHhhcccCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCc-CCCccEEEEEECCC----
Confidence 98877665544333 334444455555 2344445666778889999999987 87764 34466778888754
Q ss_pred HHHHHHHHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+..++.+.|.++||.+.|+. ..++|++++ .+++++++++++|
T Consensus 309 ~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~~i~~~~~~l 356 (357)
T TIGR03539 309 DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATDERIAAAVARL 356 (357)
T ss_pred CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCHHHHHHHHHhh
Confidence 45678889999999997753 468999995 4788999988876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=225.02 Aligned_cols=324 Identities=16% Similarity=0.124 Sum_probs=213.7
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC------CCccCCChHHHHHHHHHHHHh---CCC-CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD------DDVLMHDPTAFRLETEMAKVM---GKE-AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~---~~~-~~~~~~~gt~a~~~~l~ 71 (359)
...|+|..+.+..+ .+.+.+++.+.... ...|++.++..++++++++++ +.+ ..+++++|++..+..+.
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~ 112 (402)
T TIGR03542 33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ 112 (402)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH
Confidence 35688988776543 46677766653322 234767788999999999976 332 23667777665555566
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCc-----------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGV-----------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
.++ .+|++|++++|+|.... ..++..|+ +++.++.+....++.+ +. +. .++++|
T Consensus 113 ~l~-~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~---~~-------~~~~~i 177 (402)
T TIGR03542 113 SLF-GSDNTVAVQDPVYPAYV---DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPD-LP---EE-------PKIDII 177 (402)
T ss_pred Hhc-CCCCEEEEeCCCCcchH---HHHHHcCCccccccccccceEEEeecchhhCCCCC-cc---cc-------CCceEE
Confidence 666 58999999999976644 34677787 7777765432222222 11 11 468899
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EE-EEeccccCCCcee--e
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SA-SVCLSKGLGAPVG--S 215 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g 215 (359)
+++ .++||||.+++.+++++|+++|++|+++||+||+|........ ..+...+....+ ++ +.|+||.||.|+- |
T Consensus 178 ~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG 256 (402)
T TIGR03542 178 YLC-SPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLG 256 (402)
T ss_pred EEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceE
Confidence 996 5677999999999999999999999999999999754322110 112222221122 44 4499999986544 8
Q ss_pred EEecCHHHH--------HHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 216 VIVGSKEFI--------KKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 216 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
|++++++++ +.+.........+. +.+.+.++...+. ....+.++.+.++++.+.+.|++. ++++.
T Consensus 257 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~ 333 (402)
T TIGR03542 257 WTVVPKELTYADGHSVIQDWERRQCTKFNGA--SYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-GFKVY 333 (402)
T ss_pred EEEecHHHhhcchhhHHHHHHHHhhhcccCC--CHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-Cceec
Confidence 999988876 22111111111122 3333333333332 122234556778888999999987 77764
Q ss_pred cCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++..++++|+.++.. .+..++.+.| +++||.+.|+. .+++||++. .+++++++++++|++++
T Consensus 334 -~~~~~~f~~v~l~~~--~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 334 -GGEHAPYLWVKTPEG--ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAF--GKRENIVEACERIKEAL 402 (402)
T ss_pred -CCCceeEEEEECCCC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHhhC
Confidence 345788999999752 4667888887 57899997753 468999974 58899999999998753
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=220.86 Aligned_cols=309 Identities=20% Similarity=0.245 Sum_probs=216.0
Q ss_pred ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCC---------------
Q 018243 15 KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGS--------------- 79 (359)
Q Consensus 15 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~--------------- 79 (359)
.++++++++|.+.. +..+...+...++++.+++++|.+.+++++|||+|+..++.+++ ++||
T Consensus 24 ~~~~~v~~a~~~~~--~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~-~~Gd~~~~~~~~~s~~~~~ 100 (363)
T TIGR01437 24 TVSDEVADAQKRGA--QNYFEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI-TRGNRYLVENLHDSKIEVN 100 (363)
T ss_pred CCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh-cCCCcchhhcccccccccc
Confidence 45689999998863 22344556778999999999999988999999999999999997 4787
Q ss_pred eEEecCCCccee---eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 80 EVILGDNSHIHI---YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 80 ~vl~~~~~~~~~---~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
+|+++.|.+... +. ....+.|+++++++. ++.+|+++++++++ ++++++++.+.++||+|.+.+
T Consensus 101 eVi~~~~~~~~~~~~~~--~~~~~~g~~~v~v~~--~~~~d~~~le~ai~--------~~t~ai~~v~~~~~~~g~~~~- 167 (363)
T TIGR01437 101 EVVLPKGHNVDYGAPVE--TMVRLGGGKVVEAGY--ANECSAEQLEAAIT--------EKTAAILYIKSHHCVQKSMLS- 167 (363)
T ss_pred eEEEECccchhcCCchH--HHHHhcCCeEEEEcC--CCCCCHHHHHHhcC--------hhceEEEEEecCCCCcCCcCC-
Confidence 888877544322 12 235678889988865 45689999999999 788877754666669999888
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCC
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~ 236 (359)
+++|.++|++||+++|+|++|.... .....+ ++|++++|+||++++|.+|+++.++++++.++......+.
T Consensus 168 --~~~i~~~a~~~gi~vivD~a~~~~~-----~~~~~~--g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~~~~~~~~ 238 (363)
T TIGR01437 168 --VEDAAQVAQEHNLPLIVDAAAEEDL-----QKYYRL--GADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKLQSKGIGR 238 (363)
T ss_pred --HHHHHHHHHHcCCeEEEECCCCCch-----HHHHHc--CCCEEEEeCCcccCCCceEEEEEcHHHHHHHHhccCCCcc
Confidence 7889999999999999999985211 111222 6899999999999888788888888888775432221111
Q ss_pred CcchhHHHHHHHHHHHHHhH---HHHhhhHHHHHHHHHHHHhcCCCceEecCCccc------eEEEEEeccchHHHHHHH
Q 018243 237 GMRQVGVLCAAALVALQENV---LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVET------NIVYFEITEDSKLYAACL 307 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 307 (359)
.........++...+++... .+..+...++++++.+.|+++||+++..+.... ..+.+.... .+.+..++
T Consensus 239 ~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~~~~l 317 (363)
T TIGR01437 239 AMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE-LGMTAADV 317 (363)
T ss_pred eeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC-CCCCHHHH
Confidence 11111111122222332222 124455666788899999999999875321111 122233321 24688999
Q ss_pred HHHHHhcC--ceecc--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHG--VLVMP--ESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 308 ~~~l~~~g--i~~~~--~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.|+++| |.+.+ ...+.+|+.+. .++++|++.++++|++++
T Consensus 318 ~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 318 VQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREIV 363 (363)
T ss_pred HHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHhC
Confidence 99998877 55442 35678899887 577999999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=223.66 Aligned_cols=328 Identities=20% Similarity=0.234 Sum_probs=228.9
Q ss_pred cccccccCCC-CCC-hHHHHHHHHHcCCCC----CCcc----CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDT-VTK-PTEAMRAAMASAEVD----DDVL----MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~-~~~-~~~~~~~a~~~~~~~----~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.+++ ... ++|.+.+++.+.... ...| +..+...++++.+++++|.+..+++++|++++..++..
T Consensus 33 ~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~ 112 (385)
T TIGR01825 33 KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSA 112 (385)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHH
Confidence 3578999875 444 557887777764431 1122 22455688888899988988889999999999988888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++||.|++++++|.+... + +...|.++..++ .+|++++++.+++..+ +++++|++++ .+||||.
T Consensus 113 ~~-~~gd~vi~~~~~~~~~~~-~--~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~----~~~~~v~~~~-v~~~tG~ 178 (385)
T TIGR01825 113 LL-RKGDIVLSDELNHASIID-G--LRLTKATKKIYK-----HADMDDLDRVLRENPS----YGKKLIVTDG-VFSMDGD 178 (385)
T ss_pred hC-CCCCEEEEEccccHHHHH-H--HHhcCCceEEeC-----CCCHHHHHHHHHhhcc----CCCeEEEEec-CCcCCCC
Confidence 87 599999999999887654 2 456676666553 3588889888874211 3677887744 4559999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch---hHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP---VRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+.+ +++|.++|++||+++|+|++|+.+.....+.. ......+.++++.|+||++|+ .|||+++++++++.+..
T Consensus 179 ~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~~~~~~~~~~~~~~ 254 (385)
T TIGR01825 179 VAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-VGGYAAGHKELIEYLKN 254 (385)
T ss_pred ccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-CCCEEecCHHHHHHHHH
Confidence 877 79999999999999999999866544322211 111223556777899999986 45788889988888765
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+....+..++++..+++... .+..++..++++++.+.|+++ |+++.. ..++++.+.++. ..+..++
T Consensus 255 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~--~~~~~~~ 329 (385)
T TIGR01825 255 RARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-GYDTGG--SETPITPVVIGD--EKAAQEF 329 (385)
T ss_pred hCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCC--CCCCEEEEEECC--HHHHHHH
Confidence 433221111123343444444553221 125667778899999999987 887643 245566666543 2356789
Q ss_pred HHHHHhcCceecc-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMP-------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 308 ~~~l~~~gi~~~~-------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.|.++||.+.+ .+...+|++++..++++++++++++|++++++.
T Consensus 330 ~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 330 SRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred HHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999778998732 234689999988999999999999999988654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=222.88 Aligned_cols=323 Identities=17% Similarity=0.142 Sum_probs=215.5
Q ss_pred ccccccCCCC-----CCh-HHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC-------Ce---EEcCCchHH
Q 018243 4 RTVDLRSDTV-----TKP-TEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE-------AG---LFVPSGTMG 65 (359)
Q Consensus 4 ~~id~~~~~~-----~~~-~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~-------~~---~~~~~gt~a 65 (359)
..|||..+.+ ..| .+.+.+++.+.... ...|+...+..++|+++++++... .. ++++|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 5688888742 223 26788887776532 235888889999999999987322 12 344555667
Q ss_pred HHHHHHHhh-hhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 66 NLISVLVHC-ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 66 ~~~~l~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
+..++..+. ..+||.|++++|+|.... ..++..|++++.++. .+++.+|++.+++.+++. ...+.+++
T Consensus 107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~---~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~i 177 (396)
T PRK09257 107 LRVGADFLKRAFPDAKVWVSDPTWPNHR---AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA------PAGDVVLL 177 (396)
T ss_pred HHHHHHHHHHhCCCCeEEECCCCcccHH---HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC------CCCCEEEE
Confidence 777765543 259999999999976644 347889999999975 345789999999988742 12235555
Q ss_pred eccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc--CchhHhhhc-CccEEE-EeccccCCCcee--eE
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL--GVPVRRLVQ-AADSAS-VCLSKGLGAPVG--SV 216 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~--~~~~~~~~~-~~d~~~-~s~~K~~g~~~g--g~ 216 (359)
.+++|||||.+++.+++++|+++|++||++||+|++|........ ..+...+.. ...+++ .|+||.|+.++. ||
T Consensus 178 ~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~ 257 (396)
T PRK09257 178 HGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGA 257 (396)
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccccccee
Confidence 588888999999999999999999999999999999643221100 112222222 223554 499999986433 87
Q ss_pred Ee---cCHHHHHH----HHHHHHhhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHhcCC--
Q 018243 217 IV---GSKEFIKK----ARRLRKTLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLNQLK-- 278 (359)
Q Consensus 217 ~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~~~-- 278 (359)
++ .+++.... +.........+. +...+.++...+ .+++++.++++.++++.+.+.|++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~ 335 (396)
T PRK09257 258 LSVVAEDAEEADRVLSQLKATIRTNYSNP--PAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS 335 (396)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhhcCCC--cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 76 34443333 222222211222 222222222222 33444467778889999999999871
Q ss_pred -CceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 279 -GLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 279 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++.+. .+.++.++|+.++. ++.+.| .++||.+.|.+ ||+++ ..+++++++++++|++++
T Consensus 336 ~~~~~~-~p~gg~~~w~~l~~-------~~~~~l~~~~~V~~~p~~----ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 336 RDFDFI-ARQRGMFSYSGLTP-------EQVDRLREEFGVYAVGSG----RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred CCcccc-cccceEEEecCCCH-------HHHHHHHHcCCEEEcCCC----eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 24543 35688899998753 344445 88999998753 99996 589999999999998753
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=220.68 Aligned_cols=309 Identities=24% Similarity=0.262 Sum_probs=226.1
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 10 SDTVTKPTEAMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 10 ~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
++++..+..+..+++.........|+ ..|...++|+.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.
T Consensus 10 ~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~ 88 (369)
T cd00614 10 TSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALL-KAGDHVVASDDL 88 (369)
T ss_pred CCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 34556666555554443322334455 578899999999999999999999999999999999988 599999999999
Q ss_pred cceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 88 HIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 88 ~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
|.+.+... ..+...|+++..++.+ |++++++.++ +++++|+++++.| |+|.+.+ +++|.++|
T Consensus 89 y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~--------~~~~~v~~e~~~n-p~g~~~d---l~~i~~la 151 (369)
T cd00614 89 YGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIK--------PETKLVYVESPTN-PTLKVVD---IEAIAELA 151 (369)
T ss_pred cchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcC--------CCCeEEEEECCCC-CCCeecC---HHHHHHHH
Confidence 87765311 1244678888888665 7899999998 6889999976655 9999887 89999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCH-HHHHHHHHHHHhhCCCcchhH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSK-EFIKKARRLRKTLGGGMRQVG 242 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 242 (359)
+++|+++|+|++++.+.. ..++..++|+++.|++|+++++ .||++++++ ++.++++.....++.+. ++
T Consensus 152 ~~~g~~livD~t~~~~~~------~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~--~p 223 (369)
T cd00614 152 HEHGALLVVDNTFATPYL------QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTIL--SP 223 (369)
T ss_pred HHcCCEEEEECCCcchhc------CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCC--CH
Confidence 999999999999654322 1222337899999999999864 368888876 88888887776666654 55
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHH
Q 018243 243 VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 306 (359)
..++++..+++.... ++++..+++.++.+.|++.|++. +..| ...+.++.|.+.. ......+
T Consensus 224 ~~a~~~l~~l~tl~~-r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~~~~~~~ 301 (369)
T cd00614 224 FDAWLLLRGLKTLPL-RMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-GLEAAKK 301 (369)
T ss_pred HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-CHHHHHH
Confidence 666666677765444 78889999999999999987664 3222 1357788888864 2345667
Q ss_pred HHHHHHhcCceec----------cC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLVM----------PE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 307 ~~~~l~~~gi~~~----------~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
|.+.|+--++.+. |. .++.+|+++. + |+.+.+++.|++++
T Consensus 302 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG--l--E~~~dl~~dl~~al 368 (369)
T cd00614 302 FLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG--I--EDVEDLIADLEQAL 368 (369)
T ss_pred HHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHhh
Confidence 7776643322210 10 1356999995 4 68888888888775
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=216.72 Aligned_cols=301 Identities=17% Similarity=0.154 Sum_probs=207.2
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
.|||+++.+..+.. .....| +.+...+|++.++++++.+.. +++++|++..+..+..++ +++ .|++
T Consensus 18 ~i~l~~Nenp~~~~----------~~~~~Y-p~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~-~~~-~vv~ 84 (332)
T PRK06425 18 IIDFSANINDFMDI----------GDISIY-PEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYI-NVG-NIII 84 (332)
T ss_pred EEEeccccCCCcCh----------hhcccC-cCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh-CCC-cEEE
Confidence 47777775554311 011224 345689999999999999763 666666654444444455 465 5777
Q ss_pred cCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
++|+|.. +. ..++..|++++.++.+. ..+|.+.++ . .++++|+++ .+|||||.+++.+++++|.
T Consensus 85 ~~P~y~~-y~--~~~~~~G~~v~~vp~~~-~~~~~~~l~----~-------~~~k~v~l~-nP~NPTG~~~s~~~~~~l~ 148 (332)
T PRK06425 85 VEPNFNE-YK--GYAFTHGIRISALPFNL-INNNPEILN----N-------YNFDLIFIV-SPDNPLGNLISRDSLLTIS 148 (332)
T ss_pred eCCChHH-HH--HHHHHcCCeEEEEeCCc-ccCcHHHHh----h-------cCCCEEEEe-CCCCCcCCccCHHHHHHHH
Confidence 7999666 44 34888999999998754 334544333 2 467899986 5677999999999999999
Q ss_pred HHHHHcCcEEEEecccccchhhhcC-chhHhhhcC-ccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCc
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQA-ADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~-~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
++|+++|++||+||+|.... +.+ .+...+... ..++++ |+||.+|.|+. ||+++++++++.+......+. .
T Consensus 149 ~~a~~~~~~iI~DE~Y~~~~--~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~~--~ 224 (332)
T PRK06425 149 EICRKKGALLFIDEAFIDFV--PNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWS--V 224 (332)
T ss_pred HHHHHcCCEEEEecchhccc--cccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCCc--c
Confidence 99999999999999964322 222 122233222 235555 99999997554 999999999988765433221 1
Q ss_pred chhHHHHHHHH-HHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 239 RQVGVLCAAAL-VALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 239 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
+.....+.. ...+.+.++.++.+.++++++.+.|+++ ++.+.. +..++++|+.++ +..++.+.|.++||.
T Consensus 225 --~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~-~~~g~f~~~~~~-----~~~~~~~~l~~~gi~ 295 (332)
T PRK06425 225 --CDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRAAG-DPSANFITFMIP-----DAHDFYSYLLKNGIL 295 (332)
T ss_pred --CHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECC-CCCceEEEEEcC-----CHHHHHHHHHHCCeE
Confidence 112211211 1223344446677888899999999998 887643 347889999875 356888999889999
Q ss_pred eccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 318 VMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 318 ~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.++. .+++||++ .+.++.++++++|++++
T Consensus 296 v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 296 VRLLDDYECLGEQYIRIAI---RRRSFNIKLVNALRNFL 331 (332)
T ss_pred EEECCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHh
Confidence 97653 35899999 46889999999998765
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=226.00 Aligned_cols=326 Identities=18% Similarity=0.185 Sum_probs=224.2
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC---C--ccCC----ChHHHHHHHHHHHHhCCCC-eE-EcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD---D--VLMH----DPTAFRLETEMAKVMGKEA-GL-FVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~---~--~~~~----~~~~~~l~~~la~~~~~~~-~~-~~~~gt~a~~~~l~~~ 73 (359)
++.|.+...+.+++.+.+++.+..... . .+.. ....+++++.+++++|.+. .+ +++|+++++..++..+
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~ 80 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSL 80 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 367888877777788888886533211 1 1111 2345788999999998753 44 5556688888887777
Q ss_pred hh---hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 CE---TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~~---~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
.. ++|+.|+++...|.+.......++..|++++.++.+.++.+|++++++.++ +++++|+++++ +|||
T Consensus 81 ~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~--------~~~~lv~~~~~-~n~t 151 (381)
T PRK02948 81 LNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT--------PDTVLASIQHA-NSEI 151 (381)
T ss_pred HHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC--------CCCEEEEEECC-cCCc
Confidence 52 468899999988877654222345678899999887788899999999998 67889988665 4599
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHH-HHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFI-KKAR 228 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~-~~~~ 228 (359)
|.+.| +++|.++|+++|+++|+|++|.++... .....+ +.|+++.|+||++| |.| |+++.++++. ....
T Consensus 152 G~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~~---~~~~~~--~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~ 222 (381)
T PRK02948 152 GTIQP---IAEIGALLKKYNVLFHSDCVQTFGKLP---IDVFEM--GIDSLSVSAHKIYG-PKGVGAVYINPQVRWKPVF 222 (381)
T ss_pred Eeehh---HHHHHHHHHHcCCEEEEEChhhccccc---cCcccC--CCCEEEecHHhcCC-CCcEEEEEEcCCCCCCCcc
Confidence 99988 789999999999999999998776432 222222 68999999999887 555 7777765531 1110
Q ss_pred H----HHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc----ceEEEEEec
Q 018243 229 R----LRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE----TNIVYFEIT 297 (359)
Q Consensus 229 ~----~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~----~~~~~~~~~ 297 (359)
. ......++. +.....++..+++ +..++..++..++++++.+.|+++ ++++...... ..++.+.++
T Consensus 223 ~~~~~~~~~~~~t~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~ 299 (381)
T PRK02948 223 PGTTHEKGFRPGTV--NVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIK 299 (381)
T ss_pred cCCCCCCCcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeC
Confidence 0 000111222 2222333333332 334446677888999999999998 7655322111 223334444
Q ss_pred cchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. .+.+++..+|.++||.+..+. ..++|++++..++++|++++++.|+++++++-
T Consensus 300 ~---~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 300 G---IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred C---CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 356778888889999996432 35899999999999999999999999987764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=221.38 Aligned_cols=329 Identities=22% Similarity=0.205 Sum_probs=221.6
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC--------CCccCCChHHHHHHH----HHHHHhCCCCe-EEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD--------DDVLMHDPTAFRLET----EMAKVMGKEAG-LFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~----~la~~~~~~~~-~~~~~gt~a~~~~l~ 71 (359)
.++|..+... .+|.+++++.+.... ...|...+....+++ .+++++|.+.. ++++||++|+..++.
T Consensus 21 ~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~ 99 (402)
T cd00378 21 TLELIASENF-TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYF 99 (402)
T ss_pred CeeeeccCCc-CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHH
Confidence 3445433222 258899998764321 123444555555554 46788998765 666789999999999
Q ss_pred HhhhhcCCeEEecCCCcceeecccc--ccccCCccceeeecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGG--ISTIGGVHPRTVKNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~--~~~~~g~~~~~v~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++. ++||+|++++|+|.+....+. ..+..|.++..++.+. ++.+|++++++.+.+ ++++++++.++
T Consensus 100 ~l~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-------~~~~~v~~~~~- 170 (402)
T cd00378 100 ALL-EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE-------FKPKLIVAGAS- 170 (402)
T ss_pred Hhc-CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh-------CCCCEEEecCc-
Confidence 887 599999999999876543111 1445676665554332 688999999999964 57888888554
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH-HHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK-EFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~-~~~~ 225 (359)
+|| ... ++++|.++|+++|+++|+|++|..+... .+.....+. +.|+++.|+||+|+++.||++++++ ++.+
T Consensus 171 ~~~--~~~---~~~~I~~l~~~~~~~li~D~a~~~g~~~-~g~~~~~~~-~~dv~~~s~sK~l~G~~gg~i~~~~~~~~~ 243 (402)
T cd00378 171 AYP--RPI---DFKRFREIADEVGAYLLVDMAHVAGLVA-GGVFPNPLP-GADVVTTTTHKTLRGPRGGLILTRKGELAK 243 (402)
T ss_pred ccC--CCc---CHHHHHHHHHhcCCEEEEEccchhhhhh-cccCCCccc-CCcEEEeccccCCCCCCceEEEeccHHHHH
Confidence 434 333 4899999999999999999998554432 221122222 5688888999999767777777765 8888
Q ss_pred HHHHHHHhhCCCcchhHHHHHHH--HHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAA--LVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~--~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
.++........+........+++ ...+ ....++.++++.++++++.+.|++. |+++...+..++++|+.++. .+.
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~-~~~ 321 (402)
T cd00378 244 KINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRP-KGI 321 (402)
T ss_pred HHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCc-cCC
Confidence 87654432222221122222212 1111 2133446777889999999999998 88875444578899999874 223
Q ss_pred HHHHHHHHHHhcCceecc----C------CCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMP----E------SSTRVRIVVHH----QISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~----~------~~~~lRi~~~~----~~~~~~i~~~~~~l~~~~~~ 352 (359)
+...+.+.|.++||.+.+ . ...++|++++. .++++|++++++.|++++++
T Consensus 322 ~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 322 TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 556777788999999942 2 34579998764 45799999999999997754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=224.82 Aligned_cols=322 Identities=14% Similarity=0.097 Sum_probs=215.5
Q ss_pred ccccccCCCC-CCh---H--HHHHHHHHcCC-CC-CCccCCChHHHHHHHHHHHHhCCCC-------eE---EcCC--ch
Q 018243 4 RTVDLRSDTV-TKP---T--EAMRAAMASAE-VD-DDVLMHDPTAFRLETEMAKVMGKEA-------GL---FVPS--GT 63 (359)
Q Consensus 4 ~~id~~~~~~-~~~---~--~~~~~a~~~~~-~~-~~~~~~~~~~~~l~~~la~~~~~~~-------~~---~~~~--gt 63 (359)
..|+|....+ ..+ . +.+.++..... .+ ...|++..+..+||+++++++.... .+ .+.+ |+
T Consensus 49 ~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga 128 (423)
T PLN02397 49 VKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGS 128 (423)
T ss_pred ceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHH
Confidence 4567777642 221 1 35666543321 12 2358888899999999999874321 11 1333 44
Q ss_pred HHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec-C-CCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN-N-QDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 64 ~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
.++...+..++. +||+|++++|+|.... ..++..|.+++.++. + +++.+|++.+++.+++.. +++++++
T Consensus 129 ~~l~~~~~~~~~-pGd~Vlv~~P~y~~y~---~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~-----~~~~~i~ 199 (423)
T PLN02397 129 LRLGAEFLARFY-PGSTIYIPNPTWGNHH---NIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP-----DGSFVLL 199 (423)
T ss_pred HHHHHHHHHHhC-CCCEEEEeCCCchhHH---HHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC-----CCCEEEE
Confidence 445666666664 9999999999976644 347888999999975 2 357889999988886320 3556666
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc---CchhHhhhcC-ccEEEE-eccccCCCcee--
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL---GVPVRRLVQA-ADSASV-CLSKGLGAPVG-- 214 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~~~-~d~~~~-s~~K~~g~~~g-- 214 (359)
+ +++|||||.+++.+++++|+++|++||++||+||+|....+... ..+...+... ..++++ |+||.+++++.
T Consensus 200 ~-~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv 278 (423)
T PLN02397 200 H-ACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV 278 (423)
T ss_pred e-CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc
Confidence 6 77888999999999999999999999999999999644332110 1122223212 235554 99999997544
Q ss_pred eEEe---cCHHHHHHHH----HHHHhhCCCcchhHHHHHHHHHHHHH------h---HHHHhhhHHHHHHHHHHHHhcCC
Q 018243 215 SVIV---GSKEFIKKAR----RLRKTLGGGMRQVGVLCAAALVALQE------N---VLVMLDGDHKKAKLLAEGLNQLK 278 (359)
Q Consensus 215 g~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~------~---~~~~~~~~~~~~~~l~~~l~~~~ 278 (359)
||++ .+++.++.+. ........+. +.+.+.++...++. + .++.++++.++++.+.+.|+++
T Consensus 279 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~- 355 (423)
T PLN02397 279 GALSVVCKSADVAVRVKSQLKLIARPMYSNP--PIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR- 355 (423)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHhcccCCC--cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 7763 4666555432 2222222222 22333333333321 1 3446678889999999999998
Q ss_pred C----ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 279 G----LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 279 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+ +.+. .+.++.|+|+.++. +++++| .++||.+.+.+ |+++. ..+++++++++++|+++++
T Consensus 356 ~~~~~~~~~-~p~gg~fl~~~l~~-------~~~~~Ll~~~~V~v~~~~----Ri~~~-~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 356 GSPGDWSHI-TKQIGMFSFTGLNK-------EQVDRMTKEYHIYMTRDG----RISMA-GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred CCCCCCCcc-cCCceEEEecCCCH-------HHHHHHHHhCCEEECCCC----eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 6 5543 35688899998752 577788 78899997554 99985 5899999999999999875
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=218.25 Aligned_cols=317 Identities=18% Similarity=0.236 Sum_probs=221.9
Q ss_pred CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---e-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcc
Q 018243 14 TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---G-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89 (359)
Q Consensus 14 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~ 89 (359)
..+.|.+++++... .++..-...+...++++.+++++|.+. . ++++||++++..++..++. +++++++..+.++
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~-~~~~vi~~~~~~~ 85 (355)
T TIGR03301 8 LSTSATVRDAMLVD-WCHWDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP-RDGKLLVLINGAY 85 (355)
T ss_pred CCCCHHHHHHhhhh-ccCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC-CCCeEEEECCCch
Confidence 34458999998872 222211123667899999999999874 2 4678999999999999884 6777665555444
Q ss_pred ee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 90 HI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 90 ~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
+. +. ..+...|.+++.++.+.++.+|++++++.+++. ++++++++.+ ++||||...+ +++|.++|++
T Consensus 86 ~~~~~--~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~~-~~~~~G~~~~---~~~i~~l~~~ 153 (355)
T TIGR03301 86 GERLA--KICEYLGIPHTDLNFSEYEPPDLNRIEEALAAD------PDITHVATVH-HETTTGILNP---LEAIAKVARS 153 (355)
T ss_pred hhHHH--HHHHHcCCceEEEecCCCCCCCHHHHHHHHHhC------CCceEEEEEe-cCCcccchhH---HHHHHHHHHH
Confidence 43 33 336678989999987777889999999999742 3566777644 4559999887 7999999999
Q ss_pred cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH--------------h
Q 018243 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK--------------T 233 (359)
Q Consensus 169 ~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~--------------~ 233 (359)
||+++|+|++++++.. +.++..+ +.|+++.|++|+++++.| |+++.++++++.+..... .
T Consensus 154 ~~~~livD~~~s~g~~---~~~~~~~--~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T TIGR03301 154 HGAVLIVDAMSSFGAI---PIDIEEL--DVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEK 228 (355)
T ss_pred cCCEEEEEeccccCCc---ccchhhc--CccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhh
Confidence 9999999998877643 2223333 688999999999866666 899999998877651000 0
Q ss_pred hCC-CcchhHHHHHHHHHHHH----Hh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCc-c-ceEEEEEeccchHHHHH
Q 018243 234 LGG-GMRQVGVLCAAALVALQ----EN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV-E-TNIVYFEITEDSKLYAA 305 (359)
Q Consensus 234 ~~~-~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 305 (359)
.+. ....+.....++..+++ .. .++.+++..++++++.+.|+++ |+++..++. . +.++++.++.....+..
T Consensus 229 ~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T TIGR03301 229 TGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFD 307 (355)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCcchHH
Confidence 000 01112222233233332 22 4446677888899999999988 887643322 2 23466776642123567
Q ss_pred HHHHHHHhcCceeccCCC---cEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVMPESS---TRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 306 ~~~~~l~~~gi~~~~~~~---~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++.++|.++||.+.+++. .++||+++..+++++++++++.|++++
T Consensus 308 ~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 308 DFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred HHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 899999999999977642 689999977889999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=235.93 Aligned_cols=333 Identities=11% Similarity=0.067 Sum_probs=228.1
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhhc
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCETR 77 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~~ 77 (359)
..|+|..+.+..| ++.+++++.+...... .++.......+.+.+++.+|.+. .+++++|+++++..+..++.++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~p 777 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQE 777 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCC
Confidence 4578887766544 4888888876432222 22333446777788888877753 4788888887776554444469
Q ss_pred CCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 78 g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
||.|+++.|+|..... .++..|++++.++.+ .++.+|.+.+++.+++ ...++|++.+|++||||.+++
T Consensus 778 GD~VLVp~PtY~~Y~~---~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~-------~~~~~I~L~nPnhNPTG~v~S 847 (1082)
T PLN02672 778 GGTLCFPAGSNGTYVS---AAKFLKANFRRIPTKSSDGFKLTAKTLASTLET-------VKKPWVYISGPTINPTGLLYS 847 (1082)
T ss_pred CCEEEEeCCChHHHHH---HHHHcCCEEEEEecccccCCCCCHHHHHHHhcc-------CCCCEEEEECcCCCCcCccCC
Confidence 9999999999766443 478889999999875 3578899999999873 234567776766589999999
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcC---chhHhhh---cC----ccEEEE-eccccCCCcee--eEEecC-H
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG---VPVRRLV---QA----ADSASV-CLSKGLGAPVG--SVIVGS-K 221 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~---~~----~d~~~~-s~~K~~g~~~g--g~~~~~-~ 221 (359)
.+++++|+++|++||++||+||+|....+.... .+..+.. .. ..++++ |+||.++.++. ||++++ +
T Consensus 848 ~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~ 927 (1082)
T PLN02672 848 NSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS 927 (1082)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH
Confidence 999999999999999999999997432221111 1111111 11 135555 99999987655 888885 5
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-------HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVAL-------QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
++++.+........... .....+.++...+ .....+.++.+.++++++.+.|++. |+.+. ++.++.++|+
T Consensus 928 eLi~~l~~~~~~s~~~~-~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~-~PeGGFfLwl 1004 (1082)
T PLN02672 928 VLIDAFHSAPGLSRPHS-TLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVL-EPQGGISMVA 1004 (1082)
T ss_pred HHHHHHHHhhhhcCCCc-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEe-cCCcEEEEEE
Confidence 58888876543332222 1112222222212 2334446667888999999999998 88864 4557777888
Q ss_pred Eecc----------c-----hHHHHHHHHHHHH-hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 295 EITE----------D-----SKLYAACLLKKLE-EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 295 ~~~~----------~-----~~~~~~~~~~~l~-~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++. . .+.+..++.++|. +.||.+.|+. .+++||++. .+++++++++++|+++.+
T Consensus 1005 ~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa--~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1005 KPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFA--LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred EccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 6531 0 0235678999995 5699998763 468999994 688999999999998654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=218.83 Aligned_cols=313 Identities=19% Similarity=0.199 Sum_probs=223.8
Q ss_pred cCCCCCChHHHHHHHHHcCCC----CCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 9 RSDTVTKPTEAMRAAMASAEV----DDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~----~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
.++++..|+++..+++..... ....|+ ..|...+||+.+++++|.+.+++++||++|+..++.+++ ++||+|+
T Consensus 41 ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl 119 (418)
T PLN02242 41 ASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLC-SSGGHVV 119 (418)
T ss_pred cCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEE
Confidence 345667777777777765432 123566 478899999999999999999999999999999999988 5999999
Q ss_pred ecCCCcceeeccc--cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhH
Q 018243 83 LGDNSHIHIYENG--GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
++.+.|....... ...+..|++++.++.. |++++++.++ + ++++|++++++ ||||.+.+ +
T Consensus 120 ~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~--------~~~tklV~lesp~-NPtG~v~d---l 182 (418)
T PLN02242 120 ASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVV--------PGKTKVLYFESIS-NPTLTVAD---I 182 (418)
T ss_pred EcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcC--------cCCCEEEEEecCC-CCCCcccC---H
Confidence 9999876654300 0123467777766543 8999999998 5 59999997655 59999886 8
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHHHHHHHHHh--h
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRLRKT--L 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~~~~--~ 234 (359)
++|+++|+++|+++|+|++|..+.. ....+ +.|+++.|+||+++++. ||++++++++++.++..... .
T Consensus 183 ~~I~~la~~~gi~livDea~~~~~~-----~~~~~--g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~ 255 (418)
T PLN02242 183 PELARIAHEKGVTVVVDNTFAPMVL-----SPARL--GADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALM 255 (418)
T ss_pred HHHHHHHHHhCCEEEEECCCCccCC-----CHHHc--CCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhh
Confidence 9999999999999999999643221 12222 68999999999997653 68999999998888766442 1
Q ss_pred CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC------------------ccceEEEEEe
Q 018243 235 GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA------------------VETNIVYFEI 296 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~------------------~~~~~~~~~~ 296 (359)
..+..+.+..++.....++.... +++++.+++.++.+.|+++ ++++..|. ..+..+.|.+
T Consensus 256 ~~g~~~~~~~A~l~~~~l~tl~~-r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l 333 (418)
T PLN02242 256 LLGPTMNPKVAFELSERLPHLSL-RMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDM 333 (418)
T ss_pred ccCCCCCHHHHHHHHcCCCcHHH-HHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEE
Confidence 22233455565555555554433 7788999999999999998 56665432 2456677888
Q ss_pred ccchHHHHHHHHHHHHhc----CceeccC---------------------------CCcEEEEEeCCCCCHH-HHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEH----GVLVMPE---------------------------SSTRVRIVVHHQISAN-DVHYTLS 344 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~----gi~~~~~---------------------------~~~~lRi~~~~~~~~~-~i~~~~~ 344 (359)
.. ...+..|.+.|+-- .+.+..+ ..+.+|+++. + | +.+.+++
T Consensus 334 ~~--~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG--l--E~~~~dli~ 407 (418)
T PLN02242 334 DT--EERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG--Y--TGTLEQRWS 407 (418)
T ss_pred CC--HHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec--C--CCCHHHHHH
Confidence 64 24577888888622 2222111 1346999984 3 5 4888888
Q ss_pred HHHHHHHHHH
Q 018243 345 CFQKIYAGVC 354 (359)
Q Consensus 345 ~l~~~~~~~~ 354 (359)
.|++++++++
T Consensus 408 dl~~al~~~~ 417 (418)
T PLN02242 408 QFEKALSAMK 417 (418)
T ss_pred HHHHHHHHhh
Confidence 8888887653
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=221.37 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=214.3
Q ss_pred cccccccCCCCC-C--hHHHHHHHHHcCCCC------CCccCCChHHHHHHHHHHHHh----CC--C-CeEEcCCchH-H
Q 018243 3 TRTVDLRSDTVT-K--PTEAMRAAMASAEVD------DDVLMHDPTAFRLETEMAKVM----GK--E-AGLFVPSGTM-G 65 (359)
Q Consensus 3 ~~~id~~~~~~~-~--~~~~~~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----~~--~-~~~~~~~gt~-a 65 (359)
...|||..+++. . |.+.+.+++.+.... ...|+...+..++++.+++++ |. + ..+++++|++ +
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 346899887654 2 235666666553322 134777778899999999987 32 2 2366666655 5
Q ss_pred HHHHHHHhhh----hcCCeEEe-cCCCcceeeccc---cccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCc
Q 018243 66 NLISVLVHCE----TRGSEVIL-GDNSHIHIYENG---GISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 66 ~~~~l~~~~~----~~g~~vl~-~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
+..++..++. .+|+.|++ ..|+|......+ ......+..++.++.+. ++.+|++.|+ +. .+
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--------~~ 179 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID--------ED 179 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC--------CC
Confidence 5555555553 25889999 699976543210 01111222232332211 3568988887 33 56
Q ss_pred eeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc--CccEEE-EeccccCCCce
Q 018243 137 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ--AADSAS-VCLSKGLGAPV 213 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~~d~~~-~s~~K~~g~~~ 213 (359)
++++++.+ ++||||.+++.+++++|+++|++|+++||+||+|.. .. .......... ...+++ .|+||. +.|+
T Consensus 180 ~~~i~l~~-P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~--~~-~~~~~~~~~~~~~~~vI~~~SfSK~-~~pG 254 (416)
T PRK09440 180 TGAICVSR-PTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP--PF-PGIIFSEATPLWNPNIILCMSLSKL-GLPG 254 (416)
T ss_pred ceEEEEec-CCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc--cC-CCcchhhcCccccCCeEEEeccccc-CCCc
Confidence 78888855 567999999999999999999999999999999632 11 1111111111 123444 499996 5554
Q ss_pred e--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH-----hHHH-HhhhHHHHHHHHHHHHhcC-C--CceE
Q 018243 214 G--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE-----NVLV-MLDGDHKKAKLLAEGLNQL-K--GLRV 282 (359)
Q Consensus 214 g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~-~~~~~~~~~~~l~~~l~~~-~--g~~~ 282 (359)
. ||+++++++++.+.........+. +.+.+.++...++. ...+ .+..+.++++.+.+.|.+. + ++.+
T Consensus 255 lRiG~~i~~~~l~~~~~~~~~~~~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~ 332 (416)
T PRK09440 255 VRCGIVIADEEIIEALSNMNGIISLAP--GRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLI 332 (416)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhccCC--CcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEE
Confidence 3 999999999999887776655444 33344444444421 1111 3344566667777777653 2 3444
Q ss_pred ecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-------------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-------------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+.+++++|+.++.. +.+..++.+.|.++||.+.|+. ..++||+++ .+++++++++++|+++
T Consensus 333 -~~p~gg~fiw~~~~~~-~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~ 408 (416)
T PRK09440 333 -HKPEGAIFLWLWFKDL-PITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEE 408 (416)
T ss_pred -ecCCCceEEEEECCCC-CCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHH
Confidence 2455789999998751 1356788899999999997752 137999996 4789999999999999
Q ss_pred HHHHHhh
Q 018243 350 YAGVCEE 356 (359)
Q Consensus 350 ~~~~~~~ 356 (359)
+++...+
T Consensus 409 ~~~~~~~ 415 (416)
T PRK09440 409 VEKAYAE 415 (416)
T ss_pred HHHHhhc
Confidence 9886543
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=220.33 Aligned_cols=307 Identities=22% Similarity=0.270 Sum_probs=225.1
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccc
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~ 97 (359)
++.++++.+...+......++...++|+.+++++|.++++.++|||.|+..++.++-.++|++|+++..++.++.. .
T Consensus 5 ~e~~~~v~~~l~s~~~~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~---a 81 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLSTYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATAS---A 81 (363)
T ss_dssp HHHHHHHHHHHHHTCCSSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHH---H
T ss_pred HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHH---H
Confidence 4444555544333333333799999999999999999999999999999999999988899999999999877765 3
Q ss_pred cccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEe
Q 018243 98 STIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID 176 (359)
Q Consensus 98 ~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D 176 (359)
....|++++.++.+ +++.+|++.+++.++ +++++|++.|.. |... ++++|.++|+++|++||+|
T Consensus 82 i~~~G~~pv~~Di~~~~~~id~~~~~~~i~--------~~t~ai~~~h~~----G~~~---d~~~i~~~~~~~~i~lIeD 146 (363)
T PF01041_consen 82 ILWAGAEPVFVDIDPETLNIDPEALEKAIT--------PKTKAILVVHLF----GNPA---DMDAIRAIARKHGIPLIED 146 (363)
T ss_dssp HHHTT-EEEEE-BETTTSSB-HHHHHHHHH--------TTEEEEEEE-GG----GB------HHHHHHHHHHTT-EEEEE
T ss_pred HHHhccEEEEEeccCCcCCcCHHHHHHHhc--------cCccEEEEecCC----CCcc---cHHHHHHHHHHcCCcEEEc
Confidence 67789999999877 789999999999999 789999987755 4544 4899999999999999999
Q ss_pred cccccchhhhcCchhHhhhcCccEEEEe--ccccCCCceeeEEec-CHHHHHHHHHHHHh---------------hCCCc
Q 018243 177 GARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGAPVGSVIVG-SKEFIKKARRLRKT---------------LGGGM 238 (359)
Q Consensus 177 ~a~~~~~~~~~~~~~~~~~~~~d~~~~s--~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~---------------~~~~~ 238 (359)
.+|++|... .+.....+ .|+.++| .+|.+..+.||+++. ++++.++++.++.. .|.++
T Consensus 147 ~a~a~g~~~-~g~~~G~~---gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~ 222 (363)
T PF01041_consen 147 AAQAFGARY-KGRPVGSF---GDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNF 222 (363)
T ss_dssp -TTTTT-EE-TTEETTSS---SSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-
T ss_pred cccccCcee-CCEeccCC---CCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccc
Confidence 999987754 44443333 4655555 469997767776666 67888888766542 34566
Q ss_pred chhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccc---eE--EEEEeccchHHHHHHHHHHHHh
Q 018243 239 RQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVET---NI--VYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+++.+.++.+...|++..+ +.++.+++++++.+.|++.+++.....+... .+ +.+.++.....+.+++.+.|.+
T Consensus 223 rm~~~~AAigl~QL~~L~~-~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~ 301 (363)
T PF01041_consen 223 RMSELQAAIGLAQLKRLDE-IIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRA 301 (363)
T ss_dssp B-BHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHH
Confidence 7888888888989988766 8888899999999999999888654332222 22 3455554211357899999999
Q ss_pred cCceeccCC----------------------------CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 314 HGVLVMPES----------------------------STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 314 ~gi~~~~~~----------------------------~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+||.+.+.. ...+.+++++.+++++++++++.|+
T Consensus 302 ~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 302 RGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp TTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 999883321 1248899999999999999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=220.42 Aligned_cols=330 Identities=20% Similarity=0.172 Sum_probs=223.1
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCC--------ccCCChHHHHHHH----HHHHHhCCCCe-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDD--------VLMHDPTAFRLET----EMAKVMGKEAG-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~~----~la~~~~~~~~-~~~~~gt~a~~~~l 70 (359)
..++|..+... ++|.+++++.+...... .+...+....+++ .+++++|.+.. ++++||++|+..++
T Consensus 26 ~~~~l~~~~n~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l 104 (416)
T PRK00011 26 EHIELIASENF-VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVY 104 (416)
T ss_pred cCeeeecccCc-CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHH
Confidence 34666665444 56888888866432111 1112334455554 78999999876 66788999999988
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccc--cccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGI--STIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~--~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.+++ ++||+|+++.++|.+.+..+.. ....|++++.++.+ .++.+|++++++.+++ .++++|++.+ ++
T Consensus 105 ~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~k~v~~~~-~~ 175 (416)
T PRK00011 105 FALL-KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE-------HKPKLIIAGA-SA 175 (416)
T ss_pred HHhc-CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh-------cCCCEEEECC-Cc
Confidence 8887 6999999999998754321111 12335677777665 3578999999999973 4688888843 33
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC-HHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS-KEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~-~~~~~~ 226 (359)
+|...+ +++|.++|+++|+++|+|++|..|.... +.....+. +.|+++.|+||+++++.||+++++ +++.+.
T Consensus 176 --~~~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~-g~~~~~~~-~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~ 248 (416)
T PRK00011 176 --YSRPID---FKRFREIADEVGAYLMVDMAHIAGLVAA-GVHPSPVP-HADVVTTTTHKTLRGPRGGLILTNDEELAKK 248 (416)
T ss_pred --CCCccC---HHHHHHHHHHcCCEEEEECcchhccccc-CccCCCCC-CCcEEEecCCcCCCCCCceEEEeCCHHHHHH
Confidence 344444 8999999999999999999987655431 11112222 678999999999977778878874 788888
Q ss_pred HHHHHHhhCCCcchhHHHHHHHH---HHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAAL---VALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
++........+.......+++.. ..++...+++++++.++++++++.|++. |+++...+..++++|+.++. .+.+
T Consensus 249 l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~-~~~~ 326 (416)
T PRK00011 249 INSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRS-KGLT 326 (416)
T ss_pred HHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcc-cCCC
Confidence 76654332222211222222222 2223344557788899999999999998 88764322345888888864 2235
Q ss_pred HHHHHHHHHhcCceecc----C------CCcEEEEEeC----CCCCHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMP----E------SSTRVRIVVH----HQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~----~------~~~~lRi~~~----~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..++.+.|.++||.+.. . .+..+|++.. ..++++|++++++.|+++++.
T Consensus 327 ~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 327 GKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 67899999999999852 1 2346898542 257899999999999998765
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=221.63 Aligned_cols=325 Identities=13% Similarity=0.132 Sum_probs=228.2
Q ss_pred CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcce
Q 018243 14 TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90 (359)
Q Consensus 14 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~ 90 (359)
...++++++++.+....+......+...++++.+++++|.+. .+++++|++++..++..++ ++||+|+++++.|++
T Consensus 18 ~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv~~~~~~~ 96 (401)
T PLN02409 18 VNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-SPGDKVVSFRIGQFS 96 (401)
T ss_pred CCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEEeCCCchh
Confidence 333489999998754333222223455788888999999864 3777888888888888877 599999999988876
Q ss_pred eeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC
Q 018243 91 IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170 (359)
Q Consensus 91 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~ 170 (359)
... ...++..|.+++.++.+.+..+|++++++.+++.. .+++++|+++++ +||||..+|.+++.++.+ |+++|
T Consensus 97 ~~~-~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~----~~~~k~v~~~~~-~~~tG~~~~~~~i~~l~~-~~~~g 169 (401)
T PLN02409 97 LLW-IDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDT----NHKIKAVCVVHN-ETSTGVTNDLAGVRKLLD-CAQHP 169 (401)
T ss_pred HHH-HHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCc----CCCccEEEEEee-cccccccCCHHHHHHHHh-hhccC
Confidence 532 13366779999999877666689999999998310 026889999555 559999999544444444 99999
Q ss_pred cEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH------------h--hC
Q 018243 171 LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK------------T--LG 235 (359)
Q Consensus 171 ~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~------------~--~~ 235 (359)
+++|+|++|+.+... .....+ ++|+++.|.|||+++|.| |+++.+++..+.+..... . .+
T Consensus 170 ~~~vvD~v~s~g~~~---id~~~~--~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 244 (401)
T PLN02409 170 ALLLVDGVSSIGALD---FRMDEW--GVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLG 244 (401)
T ss_pred cEEEEEcccccCCcc---cccccc--CccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcC
Confidence 999999998664332 222223 789999999999988888 999999888877643110 0 11
Q ss_pred CC--cchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC--ccc-eEEEEEeccchHHHHHH
Q 018243 236 GG--MRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--VET-NIVYFEITEDSKLYAAC 306 (359)
Q Consensus 236 ~~--~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~~~-~~~~~~~~~~~~~~~~~ 306 (359)
.. ..++.....+...++ +...+.+.++..++++++++.|+++ |+++..+. ..+ .+.++.++. +++..+
T Consensus 245 ~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~--~~~~~~ 321 (401)
T PLN02409 245 TYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPE--GIDSAE 321 (401)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCC--CCCHHH
Confidence 00 011111222223333 3345556777888999999999988 88875432 123 345566653 357778
Q ss_pred HHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 307 ~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+.| .++||.+..+ ....+||+....++.+++..++++|.+++.++.
T Consensus 322 l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 322 IVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred HHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 88888 7889998654 356799999889999999999999999998765
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=217.61 Aligned_cols=314 Identities=18% Similarity=0.191 Sum_probs=220.5
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCccee-
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHI- 91 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~- 91 (359)
.+++++++.... .+..-...+...++++.+++++|.+. .++++|||+++..++..+.. +++++++..+.+++.
T Consensus 15 ~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-~~~~vlv~~~~~~~~~ 92 (363)
T TIGR02326 15 SRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-KDGKLLVVINGAYGAR 92 (363)
T ss_pred CHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-CCCeEEEEeCChhhHH
Confidence 488888887743 22111123455788999999999863 36778899999999999884 777766544443433
Q ss_pred eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCc
Q 018243 92 YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171 (359)
Q Consensus 92 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~ 171 (359)
+. ..++..|.+++.++.++++.+|++.+++.+++. ++++++.+.++ +||||...| +++|.++|+++|+
T Consensus 93 ~~--~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~~~-~~~tG~~~~---i~~I~~l~~~~g~ 160 (363)
T TIGR02326 93 IV--QIAEYLGIPHHVVDTGEVEPPDVVEVEAILAAD------PAITHIALVHC-ETTTGILNP---IEAVAKLAHRHGK 160 (363)
T ss_pred HH--HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC------CCccEEEEEee-cCCccccCc---HHHHHHHHHHcCC
Confidence 33 336778999999988888889999999999842 35667777454 559999988 7999999999999
Q ss_pred EEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH------------h---hC
Q 018243 172 KLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK------------T---LG 235 (359)
Q Consensus 172 ~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~------------~---~~ 235 (359)
++++|++|++|..+ .+...+ ++|+++.|+||++++|.| |+++.+++.++++..... . .+
T Consensus 161 ~livD~~~~~g~~~---~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (363)
T TIGR02326 161 VTIVDAMSSFGGIP---IDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHG 235 (363)
T ss_pred EEEEEccccccCcc---cchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCC
Confidence 99999998776542 233333 689999999999977777 999998887766431000 0 00
Q ss_pred -CCcchhHHHHHHHHHHHH----H-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-ccce-EEEEEeccchHHHHHHH
Q 018243 236 -GGMRQVGVLCAAALVALQ----E-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-VETN-IVYFEITEDSKLYAACL 307 (359)
Q Consensus 236 -~~~~~~~~~~~~~~~~l~----~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 307 (359)
..+..+.....+...+++ . ..+.+.+++.++++++++.|+++ |+++..++ ..++ ..++.++.....+...+
T Consensus 236 ~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 314 (363)
T TIGR02326 236 KWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADF 314 (363)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCCCCHHHH
Confidence 001112222222233332 2 23446677888999999999998 88764332 2333 35677654212366789
Q ss_pred HHHHHhcCceeccCC---CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPES---STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 308 ~~~l~~~gi~~~~~~---~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.|.++||.+.++. ..++|+++...++.+++++++++|++++
T Consensus 315 ~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 315 YQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred HHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999997764 4689999866789999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=217.83 Aligned_cols=316 Identities=16% Similarity=0.117 Sum_probs=208.8
Q ss_pred ccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
..|||..+ +...|++.+.+++.+.......|... ...++++.++++++.+.. +++++|++..+..+..++. +|+.|
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~v 100 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSALRHYPDP-DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAV 100 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCCc-CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeE
Confidence 35889887 44566688888887654333345543 357999999999987643 6666666544444444443 67899
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCC-----CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT-----MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
++++|+|.... ..++..|.+++.++.+.++. .+++++++.. .+++++++. .+|||||.+++.
T Consensus 101 lv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~-nP~NPTG~~~~~ 167 (360)
T PRK07392 101 YLITPAFGDYR---RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL---------TPNDGLLLN-NPHNPTGKLWSR 167 (360)
T ss_pred EEECCCcHHHH---HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc---------cCCCEEEEe-CCCCCCCCCcCH
Confidence 99999976644 34778899999998764443 3455554432 356778775 557799999995
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh-hhcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHH
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR-LVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~ 232 (359)
++|.++++++++ +|+||+|..........+... +.....++++ |+||.||.|+- ||+++++++++.+.....
T Consensus 168 ---~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~ 243 (360)
T PRK07392 168 ---EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD 243 (360)
T ss_pred ---HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC
Confidence 566677778885 666999643222111112222 2222235554 99999996544 999999998888764432
Q ss_pred hhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHH
Q 018243 233 TLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKK 310 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
. +..+.+.+.++...++ .+.+...+.+.++++++.+.|+.++++.+. +..++++|+.++. +..++.+.
T Consensus 244 ~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~fl~~~~~~----~~~~l~~~ 313 (360)
T PRK07392 244 P----WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTPL--PSAANFLLVQSQG----SALQLQEK 313 (360)
T ss_pred C----CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCCEEEEEcCC----CHHHHHHH
Confidence 1 2234455555555553 333334456777888999999988888764 3578899988764 56678877
Q ss_pred H-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 311 L-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 311 l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
| +++||.+.|+. .+++||++. +.++.+++.+.|++++.
T Consensus 314 ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 314 LLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLLEALAAILA 358 (360)
T ss_pred HHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 6 78899997762 368999994 35556677777766543
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=220.64 Aligned_cols=304 Identities=14% Similarity=0.156 Sum_probs=212.6
Q ss_pred cccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-EEcCCch-HHHHHHHHHhhhhcC-Ce
Q 018243 5 TVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-LFVPSGT-MGNLISVLVHCETRG-SE 80 (359)
Q Consensus 5 ~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~~gt-~a~~~~l~~~~~~~g-~~ 80 (359)
.|+|+++.+.. |++.+ .. .....| +.+...++++.+++++|.+.. +++++|+ +++..++.+++ ++| +.
T Consensus 30 ~~~l~~Nenp~~~~~~~----~~--~~~~~Y-p~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~ 101 (351)
T PRK01688 30 DVWLNANEYPTAVEFQL----TQ--QTLNRY-PECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDA 101 (351)
T ss_pred ceEecCCCCCCCCChhh----cc--cccccC-CCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCCE
Confidence 47787765554 33432 11 122234 334457999999999998653 6555555 56666666665 576 89
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|.. +. ..++..|++++.++.++++.+|++++++.++ ++++|++++ +|||||..++.++++
T Consensus 102 vli~~P~y~~-y~--~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~---------~~~lv~l~n-PnNPTG~~~~~~~l~ 168 (351)
T PRK01688 102 ILYCPPTYGM-YS--VSAETIGVEIRTVPTLDNWQLDLPAIADNLD---------GVKVVYVCS-PNNPTGNLINPQDLR 168 (351)
T ss_pred EEEcCCCHHH-HH--HHHHHcCCEEEEeecCCCCCCCHHHHHHhcc---------CCcEEEEeC-CCCCCCCCCCHHHHH
Confidence 9999999755 44 3477889999999887778899999988764 578888865 566999999999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
+|++.|++ +.+||+||+|.... ...+...+. ....++++ |+||.||.++- ||+++++++++.++.....+.
T Consensus 169 ~l~~~~~~-~~~vivDEay~~f~---~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~~- 243 (351)
T PRK01688 169 TLLELTRG-KAIVVADEAYIEFC---PQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPYP- 243 (351)
T ss_pred HHHHhCCC-CcEEEEECchhhcC---CCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCCC-
Confidence 99999876 68899999964322 112222322 23355555 99999986543 889999999988776544332
Q ss_pred CcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 237 GMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
. +...+.++...++ ...++.++...+.++++.+.|++++++.... +..++|+|+.++ +..++.++|.
T Consensus 244 -v--~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-ps~~nfi~~~~~-----~~~~l~~~L~ 314 (351)
T PRK01688 244 -L--STPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVF-DSETNYILARFT-----ASSAVFKSLW 314 (351)
T ss_pred -C--CHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-CCCCcEEEEEcC-----CHHHHHHHHH
Confidence 2 2233334444453 2334455666778889999999887775323 458899999875 3568899999
Q ss_pred hcCceeccC-----CCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 313 EHGVLVMPE-----SSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 313 ~~gi~~~~~-----~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
++||.+.++ ..+++||+++ ++++++.++++|
T Consensus 315 ~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 315 DQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred HCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 999999653 2468999984 689999999887
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=217.14 Aligned_cols=283 Identities=18% Similarity=0.171 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHhCCCC-eEEcCCc-hHHHHHHHHHhhhhcC-CeEEecCCCcceeeccccccccCCccceeeecC--C-
Q 018243 39 TAFRLETEMAKVMGKEA-GLFVPSG-TMGNLISVLVHCETRG-SEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--Q- 112 (359)
Q Consensus 39 ~~~~l~~~la~~~~~~~-~~~~~~g-t~a~~~~l~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~- 112 (359)
...++++.++++++.+. .+++++| ++++..++..++ .+| +.|++++|+|. .+. ..++..|.+++.++.. .
T Consensus 60 ~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~-~~~--~~~~~~g~~~~~v~~~~~~~ 135 (364)
T PRK04781 60 QPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFG-MYA--VCARLQNAPLVEVPLVDGAD 135 (364)
T ss_pred CHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChH-HHH--HHHHHcCCEEEEEecCCCcc
Confidence 36899999999998865 3666665 556666666666 577 78999999854 454 3367789999999763 2
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
.+.+|++++.+.+.+ +++++|++++ +|||||.+++.+++.++++.|+ ++++||+||+|.... . ..+..
T Consensus 136 ~~~~d~~~l~~~~~~-------~~~~lv~l~~-p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~--~-~~~~~ 203 (364)
T PRK04781 136 GFHADVPAIVAAALA-------SNAKLVFLCS-PSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFS--D-VPSAV 203 (364)
T ss_pred CCCcCHHHHHHHHhc-------cCCeEEEEcC-CCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhc--C-CcchH
Confidence 345788888766543 6889999965 6679999999999999998885 478999999964322 1 11222
Q ss_pred hh-hcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH----hHHHHhhhHH
Q 018243 193 RL-VQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE----NVLVMLDGDH 264 (359)
Q Consensus 193 ~~-~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 264 (359)
.+ .....++++ |+||.||.|+. ||+++++++++.++.....++. +...+.++...++. ...+.++++.
T Consensus 204 ~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 279 (364)
T PRK04781 204 GLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPYPV----PTPCAALAEQALSAPALAVTARRVAEVR 279 (364)
T ss_pred HHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCCCC----CHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22 222345555 99999996544 9999999999998776554332 22333344444432 2223555677
Q ss_pred HHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcEEEEEeCCCCCHHHH
Q 018243 265 KKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STRVRIVVHHQISANDV 339 (359)
Q Consensus 265 ~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lRi~~~~~~~~~~i 339 (359)
++++.+.+.|++++++.... +..++++|++++. ..++.+.|.++||.+.++. .+++||++. ++++.
T Consensus 280 ~~r~~l~~~L~~~~~~~~~~-p~~g~f~~~~~~~-----~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~~ 350 (364)
T PRK04781 280 AERERLHAALAQLPGVRRVY-PSQGNFLLVRFDD-----AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQN 350 (364)
T ss_pred HHHHHHHHHHHhCCCCCeEC-CCCCcEEEEEcCC-----HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHHH
Confidence 88899999999887775323 4579999999863 4578889999999997653 468999984 68999
Q ss_pred HHHHHHHHHHH
Q 018243 340 HYTLSCFQKIY 350 (359)
Q Consensus 340 ~~~~~~l~~~~ 350 (359)
++++++|+++.
T Consensus 351 ~~l~~al~~~~ 361 (364)
T PRK04781 351 DRVLAALQRTQ 361 (364)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=220.54 Aligned_cols=326 Identities=18% Similarity=0.181 Sum_probs=217.8
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCC----CC---ccCCChHHHHHHHHH---HHHhCC--CC-eEEcCCchHHHHHHHHH
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVD----DD---VLMHDPTAFRLETEM---AKVMGK--EA-GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~----~~---~~~~~~~~~~l~~~l---a~~~~~--~~-~~~~~~gt~a~~~~l~~ 72 (359)
+.|.+...+.+++.+++++.+.... .. .|+ .+....+++.+ .+.++. +. .++++|+++++..++.+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~ 79 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG 79 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence 3566766677777888888664321 11 111 12334555554 444554 23 35666777888888876
Q ss_pred hhh----hc-CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 73 HCE----TR-GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 73 ~~~----~~-g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+.. ++ +++|+++...|++.......++..|++++.++.++++.+|++++++.++ ++++++++.+ ++
T Consensus 80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~--------~~t~lv~~~~-~~ 150 (382)
T TIGR03403 80 VYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT--------EKTALVSVMW-AN 150 (382)
T ss_pred HHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc--------cCCeEEEEEc-cc
Confidence 631 24 4689999988877654222245678899999888888899999999998 6788888855 55
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHH--
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFI-- 224 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~-- 224 (359)
||||..+| +++|.++|+++|+++++|+++..+... ..... .++|++++|+||++| |.| |+++.++...
T Consensus 151 n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~~---~~~~~--~~~D~~~~s~~K~~g-p~G~g~l~vr~~~~~~ 221 (382)
T TIGR03403 151 NETGMIFP---IKEIGEICKERGVLFHTDAVQAIGKIP---VDVQK--AGVDFLSFSAHKFHG-PKGVGGLYIRKGVELT 221 (382)
T ss_pred CCCccccC---HHHHHHHHHHcCCEEEEechhhcCCCc---cCccc--cCCCEEEEcchhhCC-CCceEEEEECCCCCCC
Confidence 59999998 789999999999999999998654332 12222 378999999999876 555 7776554331
Q ss_pred HHHH---HHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC--ccceEEEEEe
Q 018243 225 KKAR---RLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--VETNIVYFEI 296 (359)
Q Consensus 225 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~~~~~~~~~~ 296 (359)
..+. .......++.....+ .++..++ .+..+...++..+.++++.+.|+++|++.+..+. ...+++.+.+
T Consensus 222 p~~~g~~~~~~~~~gt~~~~~~--~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T TIGR03403 222 PLFHGGEHMGGRRSGTLNVPYI--VAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISI 299 (382)
T ss_pred CcccCCCCCCCcccCCcChHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEe
Confidence 0000 000001111211222 1222233 3334445567778889999999998899886432 1245667777
Q ss_pred ccchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+. .+..++.+.|.++||.+..+. ...+|+++++.++++|++++++.|+++++++
T Consensus 300 ~~---~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 300 KG---VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred CC---CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 64 467788888989999996431 2469999999999999999999999999887
Q ss_pred Hh
Q 018243 354 CE 355 (359)
Q Consensus 354 ~~ 355 (359)
+.
T Consensus 377 ~~ 378 (382)
T TIGR03403 377 RA 378 (382)
T ss_pred Hh
Confidence 64
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=220.58 Aligned_cols=319 Identities=17% Similarity=0.185 Sum_probs=220.2
Q ss_pred cccCCCCC-ChHHHHHHHHHcCCCCC---Cc---cCC----ChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHH
Q 018243 7 DLRSDTVT-KPTEAMRAAMASAEVDD---DV---LMH----DPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 7 d~~~~~~~-~~~~~~~~a~~~~~~~~---~~---~~~----~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~ 72 (359)
.|.+.... .+++.+.+++.+..... .. |.. .+...++++.+++++|.+. .++++|+++++..++.+
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~ 81 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG 81 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh
Confidence 45554433 34466776665532211 11 211 2556899999999999863 36667888898888888
Q ss_pred hhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ ++|++|+++.++|.+..... ..++..|.+++.++.+.++.+|++++++.++ +++++|++++ ++||||
T Consensus 82 ~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~-~~n~tG 151 (376)
T TIGR01977 82 LL-KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK--------TNTKLIVVSH-ASNVTG 151 (376)
T ss_pred cc-CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC--------CCCeEEEEEC-CCCCcc
Confidence 66 58999999999987764310 1244568899988877778899999999997 6788999865 555999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEec-CHHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARR 229 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~ 229 (359)
..+| +++|.++|+++|+++|+|++|++|.... .... .++|++++|+||++++|.| |+++. ++..+..+..
T Consensus 152 ~~~~---~~~i~~l~~~~~~~livD~a~~~g~~~~---~~~~--~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 152 TILP---IEEIGELAQENGIFFILDAAQTAGVIPI---DMTE--LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred ccCC---HHHHHHHHHHcCCEEEEEhhhccCccCC---Cchh--cCCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 9998 7889999999999999999997766531 1222 3799999999999988876 55544 4331111110
Q ss_pred H---------------H-HhhCCCcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCC---
Q 018243 230 L---------------R-KTLGGGMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--- 286 (359)
Q Consensus 230 ~---------------~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--- 286 (359)
. . ....++. +.....+...+++. ..+...++..++++++.+.|++.+++++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~--~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 301 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTL--NTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPA 301 (376)
T ss_pred CCCccccccccccccchhhccCCCC--CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcc
Confidence 0 0 0001111 11222222333432 23345667788899999999988888875431
Q ss_pred ccceEEEEEeccchHHHHHHHHHHHHhc-CceeccC--------------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDSKLYAACLLKKLEEH-GVLVMPE--------------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--------------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
...+++++.++. .+..++.+.|.++ ||.+..+ ....+|++++..++++|+++++++|++
T Consensus 302 ~~~~~v~~~~~~---~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 302 NRVGVVSFTVEG---IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccCCeEEEEECC---CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 135677778764 4778899999765 9988543 346899999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=215.64 Aligned_cols=322 Identities=14% Similarity=0.044 Sum_probs=213.4
Q ss_pred HHHHHHHHHcCC-CCCCccCCChHHHHHHHHHHHHhCC-----C----CeEEcCCc-hHHHHHHHHHhhhhcCCeEEecC
Q 018243 17 TEAMRAAMASAE-VDDDVLMHDPTAFRLETEMAKVMGK-----E----AGLFVPSG-TMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 17 ~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~-----~----~~~~~~~g-t~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
.+.+.+++.+.. .....|+..++...+++.+++++.. . ..+++++| ++++..++..++ ++||.|++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~ 100 (388)
T PRK08637 22 LSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPD 100 (388)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcC
Confidence 377777776632 1244577788899999999987631 1 12455555 556666666666 6999999999
Q ss_pred CCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 86 NSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
|+|..... ......|.+++.++.. +++.+|++++++.++... .+.+.+++.+.+|||||.+++.+++++|++
T Consensus 101 P~y~~~~~--~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~-----~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~ 173 (388)
T PRK08637 101 HNWGNYKL--TFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAY-----NKGKVIVILNFPNNPTGYTPTEKEATAIVE 173 (388)
T ss_pred CCCccHHH--HHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhc-----cCCCEEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99766443 1234578899998863 556789999999887110 233444444667889999999999999999
Q ss_pred HHHH-----cCcEEEEecccccchhhhcCchh----Hhhhc-CccE--EEE-eccccCCCcee--eEEec------CHHH
Q 018243 165 IAKK-----HGLKLHIDGARIFNAAVALGVPV----RRLVQ-AADS--ASV-CLSKGLGAPVG--SVIVG------SKEF 223 (359)
Q Consensus 165 ~~~~-----~~~~li~D~a~~~~~~~~~~~~~----~~~~~-~~d~--~~~-s~~K~~g~~~g--g~~~~------~~~~ 223 (359)
+|++ |+++||+||+|.... +.+... ..+.. ...+ +.+ |+||.++.|+. ||++. ++++
T Consensus 174 ~~~~~~~~~~~~~iI~De~Y~~l~--~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l 251 (388)
T PRK08637 174 AIKELADAGTKVVAVVDDAYFGLF--YEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTV 251 (388)
T ss_pred HHHHHHhcCCcEEEEecccchhcc--cCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHH
Confidence 8875 899999999964322 222211 12211 1133 333 99999876654 87774 3677
Q ss_pred HHHHHHHHH-hh-CCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcC---CCceEecCCccceEEE
Q 018243 224 IKKARRLRK-TL-GGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETNIVY 293 (359)
Q Consensus 224 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~~~~ 293 (359)
.+.+..... .. ......+.+.+.++...++ ....+.+..+.++.+.+.+.|++. +++.+. ++..+.++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~ 330 (388)
T PRK08637 252 KEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY-PFNSGYFMC 330 (388)
T ss_pred HHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cccceEEEE
Confidence 777653221 10 1111223444455544442 222223344666677777777664 245553 345788899
Q ss_pred EEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++++. .+..++.++| +++||.+.+.+.+++|++++ ..+++++++++++|.++++++
T Consensus 331 ~~l~~---~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~-~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 331 LKLKG---VDAEELRVHLLEKYGIGTIALNETDLRIAFS-CVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ecCCh---HHHHHHHHHHhhhcceEEEeccCCceEEEee-cCCHHHHHHHHHHHHHHHHhc
Confidence 99863 4778899998 67899987777789999997 478999999999999998765
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=217.37 Aligned_cols=320 Identities=16% Similarity=0.173 Sum_probs=221.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|.+.+++.+....... ....+...+++++++++.+.+.+++++||++|+..++..+..
T Consensus 40 ~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~ 119 (396)
T PRK04073 40 NRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARR 119 (396)
T ss_pred CEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHH
Confidence 357898876 3334558888888775443211 224566788999999998888889999999999999998863
Q ss_pred h--------cC-CeEEecC-CCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 76 T--------RG-SEVILGD-NSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 76 ~--------~g-~~vl~~~-~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
. ++ ++|+... ..|..+.. + ....+. .+..++.+ |++++++.++
T Consensus 120 ~~~~~~g~~~~r~~ii~~~~~~HG~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~------- 184 (396)
T PRK04073 120 WAYDVKGVEPNKAEIIACEGNFHGRTMA--A-VSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAIT------- 184 (396)
T ss_pred HhhhccCCCCCCCEEEEECCCcCCCCHH--H-HhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcc-------
Confidence 1 23 4566554 45544432 1 222111 11223322 7899999887
Q ss_pred CCceeEEEEeccccCCCceecCh-hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-h-hhcCccEEEEeccccCC
Q 018243 134 YPTTRLICLENTHANCGGRCLSV-EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-R-LVQAADSASVCLSKGLG 210 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~~~-~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~~K~~g 210 (359)
+++++|+++++ +||+|..++. +++++|.++|++||+++|+||+|.. +...+.... . ....+|++ +++|.+|
T Consensus 185 -~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~~~~pdi~--~~sK~lg 258 (396)
T PRK04073 185 -PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG--LGRTGKLFACDWDNVTPDMY--ILGKALG 258 (396)
T ss_pred -cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhC--CCcCcHHHHhhhcCCCCCEE--Eeccccc
Confidence 67888988664 4599998775 5799999999999999999999863 222232111 1 11245655 4679997
Q ss_pred Ccee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCce-EecCC
Q 018243 211 APVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA 286 (359)
Q Consensus 211 ~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~ 286 (359)
++.. |++++++++.+.+... ..+.++..+++.++++..+++... +...++..++.+++.+.|+++ +.. +...+
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l-~~~~i~~~~ 335 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPG--SHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI-DNPMIKEVR 335 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCC--CCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh-cCCccccee
Confidence 6532 7888899988876432 233344456677777777776442 235566777889999999886 321 11113
Q ss_pred ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+.++++.+.. +..++.++|.++||.+.+.+..++|++++..++++++++++++|++++
T Consensus 336 ~~g~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 336 GRGLFIGVELNE----PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred cceEEEEEEecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 457778888764 567899999999999987777899999988999999999999998875
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=215.96 Aligned_cols=324 Identities=19% Similarity=0.229 Sum_probs=227.3
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 10 SDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 10 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
+.-+..+.+.++++|.+.. ++..........++++.+++++|.+. .++++||++++..++.++. .+++.+++..
T Consensus 10 ~pgP~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~ 87 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDW-GSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPD 87 (368)
T ss_pred cCCCCCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEe
Confidence 3344555699999997753 33221123467899999999999863 2477899999999999998 5888888877
Q ss_pred CCcceee-ccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 86 NSHIHIY-ENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 86 ~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
+.+++.. . ..++..|++++.++.++++.+|++++++.+++. +++++|++.+ ++||||...| +++|.+
T Consensus 88 ~~~~~~~~~--~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~~-~~~~tG~~~~---~~~i~~ 155 (368)
T PRK13479 88 NGAYGARIA--QIAEYLGIAHVVLDTGEDEPPDAAEVEAALAAD------PRITHVALVH-CETTTGILNP---LDEIAA 155 (368)
T ss_pred CCchHHHHH--HHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhC------CCCcEEEEEc-ccCccccccC---HHHHHH
Confidence 7766543 2 236778999999988777788999999998731 4567788755 4559999988 789999
Q ss_pred HHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhh---------
Q 018243 165 IAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTL--------- 234 (359)
Q Consensus 165 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~--------- 234 (359)
+|+++|+++|+|+++.++... .+...+ ++|+++.|++|++++|.| |+++.++++++.+......+
T Consensus 156 l~~~~~~~livDa~~~~g~~~---~~~~~~--~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T PRK13479 156 VAKRHGKRLIVDAMSSFGAIP---IDIAEL--GIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWA 230 (368)
T ss_pred HHHHcCCEEEEEcccccCCcc---cccccc--CceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHh
Confidence 999999999999987665432 222222 688888999999877777 99999998887754321110
Q ss_pred -----CCC-cchhHHHHHHHHHHH----HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc-cceE-EEEEeccchH
Q 018243 235 -----GGG-MRQVGVLCAAALVAL----QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV-ETNI-VYFEITEDSK 301 (359)
Q Consensus 235 -----~~~-~~~~~~~~~~~~~~l----~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~-~~~~~~~~~~ 301 (359)
+.. +..+.....+...++ +. ..++..+++.++++++++.|+++ |+++..++. ..+. ..+.++....
T Consensus 231 ~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 309 (368)
T PRK13479 231 YMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPA 309 (368)
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCC
Confidence 000 011212222222222 22 24446677888999999999998 887643321 2222 3344443222
Q ss_pred HHHHHHHHHHHhcCceeccCC---CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLEEHGVLVMPES---STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 302 ~~~~~~~~~l~~~gi~~~~~~---~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+..++.++|.++||.+.++. ..++|++....+++++++.++++|+++++++
T Consensus 310 ~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 310 YDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred cCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 466789999999999997653 3479999765789999999999999998765
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=215.35 Aligned_cols=289 Identities=18% Similarity=0.188 Sum_probs=214.6
Q ss_pred ccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeee
Q 018243 33 VLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVK 109 (359)
Q Consensus 33 ~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~ 109 (359)
.|+ .++...+||+.+++++|.+.+++++||+.|+..++.+++ ++||+|+++.+.|.+.+... ..+...|++++.++
T Consensus 57 ~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd 135 (400)
T PRK06234 57 IYSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVD 135 (400)
T ss_pred cccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEEC
Confidence 365 578899999999999999988999999999998888887 59999999999887655300 11456788888887
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc--CcEEEEecccccchhhhc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH--GLKLHIDGARIFNAAVAL 187 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~--~~~li~D~a~~~~~~~~~ 187 (359)
.. |++++++.++ +++++|+++++ +||||.+.+ +++|.++|+++ |+++|+|++|..+..
T Consensus 136 ~~-----d~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~--- 195 (400)
T PRK06234 136 TS-----NLEEVRNALK--------ANTKVVYLETP-ANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYI--- 195 (400)
T ss_pred CC-----CHHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhc---
Confidence 54 8999999998 78999999765 559999887 89999999997 999999999754322
Q ss_pred CchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHHHHHHH--HHhhCCCcchhHHHHHHHHHHHHHhHHHHhhh
Q 018243 188 GVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRL--RKTLGGGMRQVGVLCAAALVALQENVLVMLDG 262 (359)
Q Consensus 188 ~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (359)
.. ++..++|+++.|++|+++++. ||++++++++++.++.. ....+.. .++..++.+..+++.... ++++
T Consensus 196 ~~---~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~--l~p~~a~l~~~~l~tl~~-r~~~ 269 (400)
T PRK06234 196 QR---PLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSV--IGPFEAFLIIRGMKTLQI-RMEK 269 (400)
T ss_pred CC---chhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhccCcHHH-HHHH
Confidence 22 122378999999999998654 58999999888887643 2233433 466777777777776554 7788
Q ss_pred HHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-----
Q 018243 263 DHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE----- 321 (359)
Q Consensus 263 ~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----- 321 (359)
..+++.++.+.|++.|.+. +..|. ..+.++.|.++.. .....+|.+.|+-.++.+.-|
T Consensus 270 ~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl 348 (400)
T PRK06234 270 HCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG-VEEGKVVMNNVKLATLAVSLGDAETL 348 (400)
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc-HHHHHHHHHhCCcceEeccCCCCCce
Confidence 8899999999999876653 22221 2466778888642 235678888886555444111
Q ss_pred ----------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 ----------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 ----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+|+++. + |+.+++++.|.++++.+
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG--l--E~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 349 IQHPASMTHSPYTAEERKEAGISDGLVRLSVG--L--EDVDDIIADLKQALDLI 398 (400)
T ss_pred ecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC--C--CCHHHHHHHHHHHHHHH
Confidence 2356999985 3 56777777777777654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=213.32 Aligned_cols=295 Identities=17% Similarity=0.168 Sum_probs=210.2
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHhhhhcCCeEEec---CCCcceee
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVHCETRGSEVILG---DNSHIHIY 92 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~---~~~~~~~~ 92 (359)
|.+.++..++.... -+..+.+.++++.+++++|. +..++++||++|+..++.++. ++||+|+++ .|+|.+..
T Consensus 36 ~~~~~~~~~~~~~~--~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s~~ 112 (346)
T TIGR03576 36 FKIDEEDLELLETY--VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPSIP 112 (346)
T ss_pred hhHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchhHH
Confidence 77777766643222 15568889999999999999 667899999999999999988 599999864 56776654
Q ss_pred ccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcE
Q 018243 93 ENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLK 172 (359)
Q Consensus 93 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~ 172 (359)
. + +++.|++++.+ + ++++++. . +++++|+++. . +++|.+++.+++++|+++|+++|++
T Consensus 113 ~-~--~~l~ga~~~~~--~-----~l~~l~~--~--------~~~~lIiitg-~-s~~G~v~~~~~L~~i~~la~~~~~~ 170 (346)
T TIGR03576 113 R-S--CKLAGAEYFES--D-----ELSELKK--I--------DGTSLVVITG-S-TMDLKVVSEEDLKRVIKQAKSKEAI 170 (346)
T ss_pred H-H--HHHcCCEEecc--C-----CHHHHhh--C--------cCceEEEEEC-C-CCCCcccCHHHHHHHHHHHHHcCCE
Confidence 3 3 77778765332 1 4555322 1 4577888843 3 5889999999999999999999999
Q ss_pred EEEecccccchhhhcCc-hhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHH
Q 018243 173 LHIDGARIFNAAVALGV-PVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVA 251 (359)
Q Consensus 173 li~D~a~~~~~~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
+++||+|+.+.....+. +... .+.|+++.|+||++++..+||+++++++++.++.....+..+. ++..++++..+
T Consensus 171 livDEAy~~~~~~~~~~~~~~~--~~~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~s~--~~~~~~aa~~a 246 (346)
T TIGR03576 171 VLVDDASGARVRRLYGQPPALD--LGADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGLEA--QAPLLAAVVRA 246 (346)
T ss_pred EEEECCccccccccCCCCCHHH--cCCcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCcccCc--cHHHHHHHHHH
Confidence 99999987754332222 1122 2568888899998855678999999999999888777666543 44566667777
Q ss_pred HHHh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcE
Q 018243 252 LQEN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STR 325 (359)
Q Consensus 252 l~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~ 325 (359)
++.. .+..++.+.++.+.+.+.++++ .+. +...+|+|++++.. -+.+.+.+.|.++||.++|+. .++
T Consensus 247 L~~~~~~~~~~~l~~r~~~~~~~l~~~---~~~--~~~~~f~~~~~~~~--~~~~~~~~ll~~~gV~v~~~~~f~~~~~~ 319 (346)
T TIGR03576 247 LEEFELSRIRDAFKRKEEVYLRLFDKL---NVE--RTPTGFVIKGVEEE--KLIEIGLDLLRNYGIITITAVGMPGASKT 319 (346)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHhC---CCC--cCCCeEEEEeCCCC--CHHHHHHHHHHhCCEEEeCCcccCCCCCe
Confidence 7543 2334556667777777777643 332 23566899988641 023445555589999998853 568
Q ss_pred EEEEeCCCCCHH---HHHHHHHHHHHHH
Q 018243 326 VRIVVHHQISAN---DVHYTLSCFQKIY 350 (359)
Q Consensus 326 lRi~~~~~~~~~---~i~~~~~~l~~~~ 350 (359)
+||++. .+++ +.+.++++|++.+
T Consensus 320 vRis~~--~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 320 LRFDLA--AKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred EEEEEe--cChHHhcCHHHHHHHHHhcc
Confidence 999993 4444 7999999998754
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=216.54 Aligned_cols=321 Identities=18% Similarity=0.191 Sum_probs=224.2
Q ss_pred cCCCCCChHHHHHHHHHcCCCC----CCccC-CChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhh---hcC
Q 018243 9 RSDTVTKPTEAMRAAMASAEVD----DDVLM-HDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCE---TRG 78 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~---~~g 78 (359)
.++..+.|+|.+.+++.+.... ...+. ......++++.+++++|.+. .+++++|++++..++..+.. +++
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~ 104 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEK 104 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCC
Confidence 4455677888888888553322 11121 12234788999999999864 47888999999998877653 247
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
++|+++++.|++..+ .++..|.+++.++.+.++.+|+++|++.++ +++++|++.+ .+|+||.+.|
T Consensus 105 ~~vl~~~~~h~s~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~vi~~~-~~~~tG~~~~--- 169 (371)
T PRK13520 105 PNIVVPESAHFSFDK---AADMLGVELRRAPLDDDYRVDVKAVEDLID--------DNTIGIVGIA-GTTELGQVDP--- 169 (371)
T ss_pred ceEEecCcchHHHHH---HHHHcCceEEEecCCCCCcCCHHHHHHHHh--------hCCEEEEEEc-CCcCCcccCC---
Confidence 899999999988554 367778899989887788899999999998 5676666645 4569999887
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCch-hHhh-hcCccEEEEeccccCCCc--eeeEEecCHHHHHHHHHHHHhh
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-VRRL-VQAADSASVCLSKGLGAP--VGSVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-~~~~-~~~~d~~~~s~~K~~g~~--~gg~~~~~~~~~~~~~~~~~~~ 234 (359)
+++|.++|+++|+++++|++|+.+........ .... ..++|.+++|.+|+.++| .|++++.++++.+.+.......
T Consensus 170 l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~ 249 (371)
T PRK13520 170 IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYL 249 (371)
T ss_pred HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccc
Confidence 89999999999999999999865443211110 0111 136789999999987543 4456666777776654211111
Q ss_pred CCCc------chhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 235 GGGM------RQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 235 ~~~~------~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.... ..++....++..+++ ...++..++..++++++.+.|+++ |+++... ...+++.+.++ +.
T Consensus 250 ~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~v~~~~~-----~~ 322 (371)
T PRK13520 250 TSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIE-PVLNIVAFDDP-----NP 322 (371)
T ss_pred cCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecC-CCceEEEEecC-----CH
Confidence 1100 011222333344442 334446777888999999999998 8884333 35667777664 35
Q ss_pred HHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++.++|.++||.+.... ..++|+++++.++++|++++++.|+++++
T Consensus 323 ~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 323 DEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 689999988899986643 56799999888999999999999998764
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=215.39 Aligned_cols=309 Identities=15% Similarity=0.129 Sum_probs=213.5
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~ 79 (359)
...+||..+.+. .|++.+++++.+.......|...++..++++.++++++.+. .+++++|+ +++..++. + ++ +
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l-~~-~ 97 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--L-RP-R 97 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--c-CC-C
Confidence 457899887664 45688898888765444457666788999999999998764 36555555 55544444 4 35 4
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
.+++..|+|..... .++..|.+++.++.+.++.+|++.+ + ++++++++. .++||||.+++.+
T Consensus 98 ~viv~~P~y~~~~~---~~~~~G~~i~~v~~~~~~~~d~~~l----~--------~~~~~i~l~-np~NPTG~~~~~~-- 159 (349)
T PRK07908 98 RAAVVHPSFTEPEA---ALRAAGIPVHRVVLDPPFRLDPAAV----P--------DDADLVVIG-NPTNPTSVLHPAE-- 159 (349)
T ss_pred eEEEeCCCChHHHH---HHHHcCCEEEeeccCcccCcChhHh----c--------cCCCEEEEc-CCCCCCCCCcCHH--
Confidence 67778899665443 3677899999998776677888743 4 567788884 4567999999965
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
+|.++|+ ++.++|+||+|.... .....+.... ...+++++ |+||.+|.++. ||+++++++++.+......+.
T Consensus 160 -~l~~l~~-~~~~iIvDe~y~~~~-~~~~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~~- 234 (349)
T PRK07908 160 -QLLALRR-PGRILVVDEAFADAV-PGEPESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHWP- 234 (349)
T ss_pred -HHHHHHh-cCCEEEEECcchhhc-cCCccccccc-cCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCCC-
Confidence 5566665 478899999975321 1111122222 12346665 99999985433 899999999988765543322
Q ss_pred CcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 237 GMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
. +....+++...++ .+.++.++++.++++++.+.|+++ ++++. ++..++++|+.++. .+++.+.|+
T Consensus 235 -~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-~p~~g~~~~~~~~~-----~~~~~~~l~ 304 (349)
T PRK07908 235 -V--GTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVV-DPAAAPFVLVRVPD-----AELLRKRLR 304 (349)
T ss_pred -c--cHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEec-cCCCceEEEEECCc-----HHHHHHHHH
Confidence 2 2222233322222 334446677888899999999998 88764 34689999999874 457888889
Q ss_pred hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 313 ~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++||.+.++. .+++||++ .+++++++++++|++++.
T Consensus 305 ~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 305 ERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred hCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence 9999997652 56899999 478899999999988754
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=216.27 Aligned_cols=291 Identities=22% Similarity=0.280 Sum_probs=216.1
Q ss_pred cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-
Q 018243 34 LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ- 112 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~- 112 (359)
|+.++...++++.+++++|.+.+++++||++|+..++..+..++|++|+++.++|.+... .+...|++++.++.+.
T Consensus 14 ~~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 90 (352)
T cd00616 14 LTLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN---AILLLGATPVFVDIDPD 90 (352)
T ss_pred ccCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH---HHHHcCCeEEEEecCCC
Confidence 456788999999999999998889999999999999998854699999999999988764 2667788999998776
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
++.+|++++++.++ +++++|++++ ++|...+ +++|.++|+++|+++|+|++|++|... .+..
T Consensus 91 ~~~~d~~~l~~~i~--------~~~~~v~~~~----~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~-~~~~-- 152 (352)
T cd00616 91 TYNIDPELIEAAIT--------PRTKAIIPVH----LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATY-KGRK-- 152 (352)
T ss_pred cCCcCHHHHHHhcC--------cCCeEEEEEC----CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeE-CCEE--
Confidence 68889999999987 6888988754 5788766 799999999999999999999876653 2221
Q ss_pred hhhcCccEEEEecc--ccCCCceeeEEec-CHHHHHHHHHHHHhhC-------------CCcchhHHHHHHHHHHHHHhH
Q 018243 193 RLVQAADSASVCLS--KGLGAPVGSVIVG-SKEFIKKARRLRKTLG-------------GGMRQVGVLCAAALVALQENV 256 (359)
Q Consensus 193 ~~~~~~d~~~~s~~--K~~g~~~gg~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~ 256 (359)
+....|+.++|++ |+++++.||+++. ++++.+.++.+..... .+..++++.++.+...++..
T Consensus 153 -~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~- 230 (352)
T cd00616 153 -VGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL- 230 (352)
T ss_pred -cccCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh-
Confidence 1123466666655 9997666776665 5688777765543211 12223445555555555544
Q ss_pred HHHhhhHHHHHHHHHHHHhcCCCceEecCCc----cceEEEEEeccchHHHHHHHHHHHHhcCceec----cC-------
Q 018243 257 LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV----ETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----PE------- 321 (359)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~------- 321 (359)
++..++..++.+++++.|+++|++++..++. ...++.+.++...+.+..++.+.|.++||.+. |.
T Consensus 231 ~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~ 310 (352)
T cd00616 231 DEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYK 310 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhh
Confidence 3367778899999999999988988754322 22345566653112478899999999999662 11
Q ss_pred ----------------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 322 ----------------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 322 ----------------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
....+|+++++.++++|+++++++|+
T Consensus 311 ~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 311 KLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred hccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 02579999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=220.04 Aligned_cols=327 Identities=14% Similarity=0.204 Sum_probs=219.1
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC----CC--cc--C--CChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD----DD--VL--M--HDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~----~~--~~--~--~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~ 72 (359)
.++|++...+++++.+++++.+.... .. .+ + ..+...++++.+++++|.+. .++++|||+++..++..
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~ 83 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG 83 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence 47788877777778888888653311 11 01 0 12346778999999999864 46777888898888776
Q ss_pred hh---hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 73 HC---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 73 ~~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+. .++|++|+++.++|.+.......++..|++++.++.+.++.+|++.+++.++ +++++|++++++ ||
T Consensus 84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~--------~~~~lv~v~~~~-n~ 154 (402)
T TIGR02006 84 IAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR--------DDTILVSIMHVN-NE 154 (402)
T ss_pred HHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC--------CCCEEEEEECCC-cC
Confidence 64 2478999999999988664211234468899999888888899999999998 678899886654 59
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKAR 228 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~ 228 (359)
||...| +++|.++|+++|+++++|++|++|... ..... .++|++++|.||++| |.| |+++.+++....+.
T Consensus 155 tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~---~~~~~--~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~ 225 (402)
T TIGR02006 155 IGVIQD---IAAIGEICRERKVFFHVDAAQSVGKIP---INVNE--LKVDLMSISGHKIYG-PKGIGALYVRRKPRVRLE 225 (402)
T ss_pred ceeccc---HHHHHHHHHHcCCEEEEEcchhcCCcc---cCccc--cCCCEEEEehhhhcC-CCceEEEEEccCCCCCCC
Confidence 999987 789999999999999999998776543 22222 378999999999876 655 77766544333222
Q ss_pred HHHH-------hhCCCcchhHHHHH-HHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-ccce-EEEEEecc
Q 018243 229 RLRK-------TLGGGMRQVGVLCA-AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-VETN-IVYFEITE 298 (359)
Q Consensus 229 ~~~~-------~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~-~~~~~~~~ 298 (359)
.... ...++......... .++..++...+...++..++++++.+.|++++++.+..+. ...+ .+.+.+..
T Consensus 226 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~ 305 (402)
T TIGR02006 226 ALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY 305 (402)
T ss_pred ceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC
Confidence 1111 11111211111111 1222233444546667888899999999988888764321 1221 22344443
Q ss_pred chHHHHHHHHHHHHhcCceeccC-----------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 299 DSKLYAACLLKKLEEHGVLVMPE-----------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 299 ~~~~~~~~~~~~l~~~gi~~~~~-----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+.+.+...| ++|.+..+ ..+.+|+|+++.+|++|+|++++.|++++++++
T Consensus 306 ---~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 306 ---VEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred ---cCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2344555555 35544211 136799999999999999999999999988764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=215.64 Aligned_cols=324 Identities=18% Similarity=0.194 Sum_probs=224.8
Q ss_pred cccccccCC---CCCCh-HHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVTKP-TEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~~~-~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ ++.++ +|.+.+++.+..... ..|. .+...++.+.++++++.+ ..++++||++|+..++.
T Consensus 43 ~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~ 121 (398)
T PRK03244 43 KEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFA-TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFK 121 (398)
T ss_pred CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccC-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHH
Confidence 357899884 44455 588888887754421 1233 345578999999998854 45888999999999999
Q ss_pred HhhhhcC-CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 72 VHCETRG-SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
.++. +| ++|+..+++|..... ......| .++..++.+ |++.+++.++ ++++
T Consensus 122 ~~~~-~g~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~--------~~~~ 185 (398)
T PRK03244 122 LARL-TGRTKIVAAEGGFHGRTM--GALALTGQPAKRAPFEPLPGGVEHVPYG-----DVDALAAAVD--------DDTA 185 (398)
T ss_pred HHHH-HCCCeEEEECCCcCCccH--HHHhccCCcccccCCCCCCCCceEeCCC-----CHHHHHHhhc--------CCeE
Confidence 8875 55 456666555543321 0111112 123333332 8899998886 6789
Q ss_pred EEEEeccccCCCceecCh-hhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccCCCcee-
Q 018243 139 LICLENTHANCGGRCLSV-EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGLGAPVG- 214 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~-~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~g~~~g- 214 (359)
+|+++++ +||+|..++. +++++|.++|++||+++|+||+|.. ++..+... ......+|++ +++|+++++..
T Consensus 186 aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~i 260 (398)
T PRK03244 186 AVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTG--IGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPI 260 (398)
T ss_pred EEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CcccchHHhhhhhCCCCCEE--EEchhhhCCccc
Confidence 9999877 5599998866 5699999999999999999999752 22223211 1111245654 66799974333
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCceEe-cCCccceEE
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVD-VDAVETNIV 292 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~ 292 (359)
|+++.++++.+.+... ..+.++..+++.++++...++... ++..++..++.+++++.|+++ +.... .....+.++
T Consensus 261 g~~~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~ 337 (398)
T PRK03244 261 GACLAFGPAADLLTPG--LHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLL 337 (398)
T ss_pred EEEEEcHHHHhhccCC--CCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEE
Confidence 6677777887765422 233445556777777777776433 235667778888999999886 33211 113478888
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.++.+ .+..+.+.|.++||.+.+.+...+|++++..++++|+++++++|+++++++.
T Consensus 338 ~i~~~~~---~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 338 GIVLTAP---VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred EEEEecc---HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 9988652 5678999999999999887778999999988999999999999999998653
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=210.52 Aligned_cols=318 Identities=20% Similarity=0.216 Sum_probs=226.3
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhc------
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETR------ 77 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~------ 77 (359)
+|.+++++.....+ ..+|+..+..+++| ++.+++||.+++ +-..||+.|+..++.+++. |
T Consensus 62 s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~-~~~~~p~ 140 (493)
T PRK13580 62 SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILA-HKVESPA 140 (493)
T ss_pred CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhc-ccccCcc
Confidence 47777777654332 23466556555554 456778999876 7889999999999999984 4
Q ss_pred -------------------------CCeEEecCCCcceeeccccccccCC--ccceeeecC-CCCCCCHHHHHHHhcCCC
Q 018243 78 -------------------------GSEVILGDNSHIHIYENGGISTIGG--VHPRTVKNN-QDGTMDIDLIEAAIRDPK 129 (359)
Q Consensus 78 -------------------------g~~vl~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~-~~~~~~~~~l~~~l~~~~ 129 (359)
||+|+..+..++.....+......+ .+.+.++.+ +++.+|++++++.++
T Consensus 141 ~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~--- 217 (493)
T PRK13580 141 LEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAR--- 217 (493)
T ss_pred hhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHh---
Confidence 7899977776665543221122223 334444444 458899999999999
Q ss_pred CCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccc
Q 018243 130 GEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSK 207 (359)
Q Consensus 130 ~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K 207 (359)
+.++.|++.+..++ +...| +++|+++|+++|+++++|++|+.|..+..... ..+. .++|++++|+||
T Consensus 218 -----~~~plvii~g~S~~--~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hK 286 (493)
T PRK13580 218 -----EFKPLILVAGYSAY--PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHK 286 (493)
T ss_pred -----hcCCEEEEeCcccc--CCCcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChh
Confidence 56677777677764 34555 89999999999999999999999887622211 1122 478999999999
Q ss_pred cCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 208 GLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV----LVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 208 ~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
+|++|.||++++++++.+.++..... -.+...++..++++. ++.... .+++++..+++++|++.|++. |+.+.
T Consensus 287 aL~GP~GG~I~~~~~l~~~L~~a~P~-i~gg~l~p~iAA~av-Al~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv 363 (493)
T PRK13580 287 TLRGPRGGLVLAKKEYADAVDKGCPL-VLGGPLPHVMAAKAV-ALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLV 363 (493)
T ss_pred hccCCCeEEEEecHHHHHHHhhCCCc-ccCCCccHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCcc
Confidence 99778899999999988887533322 222233444444443 343322 336788899999999999999 99875
Q ss_pred cCCccceEEEEEeccchHHHHHHHHHHHHhcCceec-------cCC---CcEEEEEeCC----CCCHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM-------PES---STRVRIVVHH----QISANDVHYTLSCFQKI 349 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-------~~~---~~~lRi~~~~----~~~~~~i~~~~~~l~~~ 349 (359)
.....+.++++.+.+ .+.....+.+.|.+.||.+. |.+ ...|||+++. .++++|++++++.|.++
T Consensus 364 ~ggTdshIV~V~lg~-~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~ 442 (493)
T PRK13580 364 TGGTDNHLVLIDVTS-FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKV 442 (493)
T ss_pred CCCCCCCEEEEEeCC-HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHH
Confidence 444578889999876 34455678889999999882 333 5679999876 56799999999999998
Q ss_pred HHHH
Q 018243 350 YAGV 353 (359)
Q Consensus 350 ~~~~ 353 (359)
++..
T Consensus 443 l~~~ 446 (493)
T PRK13580 443 LSNT 446 (493)
T ss_pred HHhh
Confidence 8754
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=203.99 Aligned_cols=323 Identities=19% Similarity=0.266 Sum_probs=263.2
Q ss_pred CCCCCChH--HHHHHHHHcCCCCC--------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh-hcC
Q 018243 10 SDTVTKPT--EAMRAAMASAEVDD--------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE-TRG 78 (359)
Q Consensus 10 ~~~~~~~~--~~~~~a~~~~~~~~--------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~-~~g 78 (359)
|+.+.++. |++++||.+....+ +.-+.+....+||++++++.+.+.+++++|.--|+...|..+.. -||
T Consensus 178 SNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpg 257 (570)
T KOG1360|consen 178 SNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPG 257 (570)
T ss_pred cCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCC
Confidence 44555444 99999998755321 23455778899999999999999999999999999988887753 378
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
..|.-++..|.++.. | .+..++.-..+.++ |++.|+++|++.+. ..+++|-+++.++ .+|.+.|
T Consensus 258 cei~SD~gNHASMI~-G--Irns~v~K~IFrHN-----D~~hL~~lL~~~~~----svPKivAFEtVhS-M~Gavcp--- 321 (570)
T KOG1360|consen 258 CEIFSDEGNHASMIQ-G--IRNSRVPKHIFRHN-----DLDHLEQLLQSSPK----SVPKIVAFETVHS-MDGAVCP--- 321 (570)
T ss_pred cEEeccccchHHHHH-H--hhhcCCcceeeccC-----CHHHHHHHHHhCCC----CCCceEEEeeeec-cCCCcCC---
Confidence 888899999999887 5 67777666666777 99999999986432 4688999999998 7899988
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhC
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~ 235 (359)
+++|++++++||++-.+||+|+.|.++..|....+ .....|+++.++.|.||. .||++.+...+++.++.+...+.
T Consensus 322 leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc-VGGYIAat~~LvDmiRSyAaGFI 400 (570)
T KOG1360|consen 322 LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC-VGGYIAATRKLVDMIRSYAAGFI 400 (570)
T ss_pred HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc-ccceehhhhhHHHHHHHhcCceE
Confidence 89999999999999999999998887755443332 234678999999999995 99999999999999999999888
Q ss_pred CCcchhHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH
Q 018243 236 GGMRQVGVLCAAALVALQENV----LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
.+++.++-..+.++.+.+... ...++..+++..++++.|.++ |+.+. +.++.++.+.+.+. ....++.+.|
T Consensus 401 FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi--~~pSHIiPv~vgda--~l~~~~sd~L 475 (570)
T KOG1360|consen 401 FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVI--PNPSHIIPVRVGDA--ALAKQASDIL 475 (570)
T ss_pred EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCcceeeeeccCH--HHHHHHHHHH
Confidence 888888888888877764221 124555778899999999999 99986 44788888888763 4667778877
Q ss_pred -HhcCcee-------ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 312 -EEHGVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 312 -~~~gi~~-------~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++||++ ++.|...+||.+++.++++.++.+++.+..+.+++.
T Consensus 476 i~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 476 ISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred HHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8999998 567888999999999999999999999999998875
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-28 Score=215.48 Aligned_cols=324 Identities=19% Similarity=0.184 Sum_probs=221.6
Q ss_pred cccccccCCCCC----ChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTVT----KPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~~----~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++... ..+|.+.+++.+....... ....+...++++.++++++.+.+++++||++|+..++..++.
T Consensus 41 ~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~ 120 (401)
T PRK00854 41 NRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRK 120 (401)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 357898886332 3358888888775443211 123567789999999999988899999999999999999863
Q ss_pred h--------cC-CeEEecCC-CcceeeccccccccC------------CccceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 76 T--------RG-SEVILGDN-SHIHIYENGGISTIG------------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 76 ~--------~g-~~vl~~~~-~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
. ++ ++|++... .|.+... . .... ...+..++.+ |++++++.+.
T Consensus 121 ~~~~~~g~~~~~~~vi~~~~~~HG~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~i~------- 185 (401)
T PRK00854 121 WGYEVKGVPEGQAEIIVCADNFHGRTLS--I-VGFSTDPDARGGFGPFTPGFRVVPFG-----DAEALEAAIT------- 185 (401)
T ss_pred HHHhccCCCCCCceEEEECCCcCCccHH--H-HhccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhC-------
Confidence 1 12 45665554 4544322 1 1111 1122333333 8999999998
Q ss_pred CCceeEEEEeccccCCCceecCh-hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCC
Q 018243 134 YPTTRLICLENTHANCGGRCLSV-EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLG 210 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~~~-~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g 210 (359)
+++++|+++++.+ |+|.+++. +++++|+++|++||+++|+||+|. | ++..+.... .....+|++++ +|+++
T Consensus 186 -~~~~aii~e~~~~-~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g-~g~~g~~~~~~~~g~~~D~~~~--~K~l~ 259 (401)
T PRK00854 186 -PNTVAFLVEPIQG-EAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G-LGRTGKLLAEEHEGIEADVTLI--GKALS 259 (401)
T ss_pred -CCeEEEEEccccC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCchHhHHhhcCCCCCEEEe--ccccc
Confidence 6899999977665 99998874 679999999999999999999986 2 222232111 11124677665 48886
Q ss_pred Cce--eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCce-EecCC
Q 018243 211 APV--GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLR-VDVDA 286 (359)
Q Consensus 211 ~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~ 286 (359)
+.. .|++++++++++.++.. ..+.++..++..++++..+++...+ ...++..++.+++.+.|+++ +.. +....
T Consensus 260 gg~~~ig~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 336 (401)
T PRK00854 260 GGFYPVSAVLSNSEVLGVLKPG--QHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSI-RSNIVREVR 336 (401)
T ss_pred CCccCeEEEEEcHHHHhcccCC--CCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh-ccCceEEEe
Confidence 543 37788898888876432 2233344466777777777765432 25667778889999999887 332 21112
Q ss_pred ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+.++.+.+..+ ..+..++.+.|.++||.+.+.+..++|++++..++++++++++++|++++.
T Consensus 337 g~g~~~~i~~~~~-~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 337 GRGLMLAVELEPE-AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ccceEEEEEEecC-chhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 3455555555331 235778999998899999877678999999888999999999999998763
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-28 Score=211.85 Aligned_cols=294 Identities=20% Similarity=0.235 Sum_probs=217.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-C
Q 018243 35 MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-D 113 (359)
Q Consensus 35 ~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~ 113 (359)
..++...++|+.+++++|.+++++++||++|+..++.++..++||+|+++.++|.+... .+...|++++.++.+. +
T Consensus 30 ~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~---~~~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 30 TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLN---MIVLLGATPVMVDVDRDT 106 (379)
T ss_pred cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHH---HHHHcCCEEEEEecCCCc
Confidence 34678999999999999999999999999999999998833699999999999887654 3667899999998764 4
Q ss_pred CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh
Q 018243 114 GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 114 ~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
+.+|++++++.++ +++++|+..| ++|...+ +++|.++|+++|+++|+|++|++|... .+.....
T Consensus 107 ~~~d~~~l~~~i~--------~~tkav~~~~----~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~-~~~~~g~ 170 (379)
T PRK11658 107 LMVTPEAIEAAIT--------PRTKAIIPVH----YAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYY-KGRHIGA 170 (379)
T ss_pred CCcCHHHHHHhcc--------cCCeEEEEeC----CCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeE-CCeecCC
Confidence 5689999999998 6788887433 5788765 899999999999999999999877553 3333333
Q ss_pred hhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh----------------------hCCCcchhHHHHHHHHH
Q 018243 194 LVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT----------------------LGGGMRQVGVLCAAALV 250 (359)
Q Consensus 194 ~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 250 (359)
+ +.++++++.+|.+.++.||+++. ++++.++++.++.. .|.+..++.+.++.++.
T Consensus 171 ~--g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ 248 (379)
T PRK11658 171 R--GTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALV 248 (379)
T ss_pred C--CCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHH
Confidence 3 44677778889887666776665 68888887754421 12234455666777777
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc---cceE-EEEEeccc-hHHHHHHHHHHHHhcCceeccC----
Q 018243 251 ALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV---ETNI-VYFEITED-SKLYAACLLKKLEEHGVLVMPE---- 321 (359)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~---- 321 (359)
.++...+ ..++.+++++++.+.|++++...+..+.. ..+. ..+.++.. .+.+.+++.+.|.++||.+...
T Consensus 249 ql~~l~~-~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~ 327 (379)
T PRK11658 249 QLAKLEA-LNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAA 327 (379)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCc
Confidence 7766544 78888899999999999885333322211 1222 22444321 1346889999999999876310
Q ss_pred ---------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 ---------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 ---------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
....+.+++++.+++++++++++.|++++
T Consensus 328 ~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 328 HTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred ccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 12347888899999999999999999865
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=215.46 Aligned_cols=328 Identities=17% Similarity=0.163 Sum_probs=221.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|++.+++.+...... .....+...++.+.+++..+.+.+++++||++|+..+++.+..
T Consensus 31 ~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~ 110 (389)
T PRK01278 31 ERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARR 110 (389)
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHH
Confidence 357899884 445555898888887554311 1123677789999999988777789999999999999998742
Q ss_pred ---hcCC----eEEecCCCcceeeccccccccCCcccee--e-ecCCCC----CCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 76 ---TRGS----EVILGDNSHIHIYENGGISTIGGVHPRT--V-KNNQDG----TMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 76 ---~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~--v-~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
.+|+ +|++.+++|..... ......+..... + +...+. ..|++.+++.++ +++++|+
T Consensus 111 ~~~~~G~~~r~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~avi 180 (389)
T PRK01278 111 YHYGKGHPERYRIITFEGAFHGRTL--ATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT--------PNTAAIL 180 (389)
T ss_pred HHHhcCCCCCCEEEEECCCcCCCcH--HHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC--------CCeEEEE
Confidence 2454 78888877655443 112222221110 0 111111 148999999998 6899999
Q ss_pred EeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccCCCce-eeEE
Q 018243 142 LENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGLGAPV-GSVI 217 (359)
Q Consensus 142 i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~g~~~-gg~~ 217 (359)
++++ ++++| .+++.+++++|+++|++||+++|+||+|.. +...+... ......+|+ .+++|.++.+. .|++
T Consensus 181 vep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g--~g~~g~~~~~~~~~~~pdi--~t~sK~l~~G~~ig~~ 255 (389)
T PRK01278 181 IEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCG--MGRTGKLFAHEWAGVTPDI--MAVAKGIGGGFPLGAC 255 (389)
T ss_pred Eecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCCcceeecccCCCCCE--EEEehhccCCcceEEE
Confidence 9766 55888 688999999999999999999999999752 22223211 111123454 47789997432 2667
Q ss_pred ecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceEecCCccceEE
Q 018243 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRVDVDAVETNIV 292 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~ 292 (359)
++++++.+.+... ..+.++..+++.++++..+++...+ ...++..++.+++++.|++ .+++.... ...+.++
T Consensus 256 ~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v-~g~G~~~ 332 (389)
T PRK01278 256 LATEEAAKGMTPG--THGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEV-RGKGLLL 332 (389)
T ss_pred EEcHHHHhccCCC--CCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-ecccEEE
Confidence 8888887766432 2334444567777777777754322 2345555666666666654 33221111 2356677
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.+.. +..++.++|.++||.+.|++...+|++++..++++++++++++|++++++
T Consensus 333 ~i~~~~----~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 333 GLKCVV----PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred EEEEec----CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 777654 56789999988899999988889999988789999999999999998865
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=210.57 Aligned_cols=307 Identities=15% Similarity=0.132 Sum_probs=221.9
Q ss_pred HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc
Q 018243 18 EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG 95 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~ 95 (359)
+++.++..........|+. .|....||+.++++.+.+.+++++||++|+..++.+++ ++||+|+++++.|.+.....
T Consensus 39 ~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~ 117 (394)
T PRK09028 39 AEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLC 117 (394)
T ss_pred HHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHH
Confidence 4555555432212234554 57788999999999998888999999999999999887 59999999999986665300
Q ss_pred -cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEE
Q 018243 96 -GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 96 -~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li 174 (359)
......|+++..++.. +.+.+++.++ +++++|+++++. ||||...+ +++|+++|+++|++++
T Consensus 118 ~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~--------~~TklV~lesps-NPtg~v~d---l~~I~~la~~~g~~lv 180 (394)
T PRK09028 118 DKILKGFGIETTYYDPM-----IGEGIRELIR--------PNTKVLFLESPG-SITMEVQD---VPTLSRIAHEHDIVVM 180 (394)
T ss_pred HHhhhhcceEEEEECCC-----CHHHHHHhcC--------cCceEEEEECCC-CCCCcHHH---HHHHHHHHHHcCCEEE
Confidence 1234567777766533 5678888887 789999997655 49988654 8999999999999999
Q ss_pred EecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHH
Q 018243 175 IDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVA 251 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
+|++|+.+. ...++..++|+++.|.+||++++ .+|+++.++++.+.++......|.+. ++..++....+
T Consensus 181 vD~t~a~p~------~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~--~p~~a~l~~rg 252 (394)
T PRK09028 181 LDNTWASPI------NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCT--SPDDVYLAMRG 252 (394)
T ss_pred EECCccccc------cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCC--CHHHHHHHHcc
Confidence 999964421 12333448999999999999876 34777888888777776666667665 66777777778
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcC
Q 018243 252 LQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHG 315 (359)
Q Consensus 252 l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 315 (359)
++...- ++++..+++..+.+.|++.|.++ +..|. ..+.++.|.++........+|.+.|+--.
T Consensus 253 l~TL~l-R~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~ 331 (394)
T PRK09028 253 LRTLGV-RLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFK 331 (394)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcce
Confidence 877554 88999999999999999987664 33331 34667888886312234567777764322
Q ss_pred cee----------ccC-------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 316 VLV----------MPE-------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 316 i~~----------~~~-------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+.+ .|. .++.+|+++. + |+.+++++.|.+++++++.
T Consensus 332 ~~~slG~~~sLv~~p~~~~~~~~~~~~~~~~~liR~svG--l--Ed~~dLi~Dl~~Al~~~~~ 390 (394)
T PRK09028 332 MGFSWGGFESLILGVFGINKLRTATNWDFSKPLIRLHIG--L--EDVDDLIADLEAGFERYNA 390 (394)
T ss_pred EecccCCCcceeECCCCcCccCchhhhcCCCCeEEEEeC--c--CCHHHHHHHHHHHHHHHHH
Confidence 221 111 1246999985 3 5788888888888887754
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=210.15 Aligned_cols=300 Identities=15% Similarity=0.054 Sum_probs=202.6
Q ss_pred ccccccCC-CCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSD-TVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~-~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
..|||+++ ++.+|+ +.+.+...+ .|.. + ...|++.++++++.+. +++++|++..+..+. .+ .+||+|
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~~~~~------~yp~-~-~~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~-~~-~~gd~v 89 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPADAWA------RLPE-T-DDGLEAAARAYYGAPQ-LLPVAGSQAAIQALP-RL-RAPGRV 89 (330)
T ss_pred HheeecCCcCCCCCCCcccCHHHHH------hCCC-C-hHHHHHHHHHHhCCCC-EEECcCHHHHHHHHH-Hc-cCCCEE
Confidence 35889988 443444 232221111 1322 2 2799999999999865 555555544443333 23 599999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
++++|+|.... ..++..|++++.++. +++++.++ +++++++.+| |||||.+++.+++++
T Consensus 90 ~v~~P~y~~~~---~~~~~~g~~~~~v~~--------~~~~~~~~---------~~~~v~l~nP-~NPTG~~~s~~~l~~ 148 (330)
T PRK05664 90 GVLSPCYAEHA---HAWRRAGHQVRELDE--------AEVEAALD---------SLDVLVVVNP-NNPTGRRFDPARLLA 148 (330)
T ss_pred EEcCCChHHHH---HHHHHcCCeEEEech--------hhHhhhhc---------CCCEEEEeCC-cCCCCCccCHHHHHH
Confidence 99999976644 347888999988854 34555444 3556777555 579999999999999
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCc
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
|+++|+++|++||+||+|.... ...+...+.....++++ |+||.+|.|+. ||+++++++++.+......+. .
T Consensus 149 l~~~~~~~~~~iI~DE~y~~~~---~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~~--~ 223 (330)
T PRK05664 149 WHARLAARGGWLVVDEAFMDNT---PQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPWT--V 223 (330)
T ss_pred HHHHHHhcCCEEEEECCcccCC---CcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCCCC--C
Confidence 9999999999999999963221 11233333322235554 99999996544 999999999998876543222 2
Q ss_pred chhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCc
Q 018243 239 RQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 316 (359)
+.....++..++. ...+..++++.++++++.+.|++. +++. .+...+++|+.++ +..++.+.|.++||
T Consensus 224 --~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~--~~~~~~f~~~~~~-----~~~~~~~~l~~~gi 293 (330)
T PRK05664 224 --SGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTP--AGGCALFQWVRTE-----DAAALHEFLARRGI 293 (330)
T ss_pred --CHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCcc--cCCcceEEEEecC-----CHHHHHHHHHHCCe
Confidence 3344444555553 233445667778899999999988 7643 1223467777653 45788899999999
Q ss_pred eeccC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 317 LVMPE-SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 317 ~~~~~-~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+... ...++||+++ .++++++++.+.|+++.++
T Consensus 294 ~v~~f~~~~~iRis~~--~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 294 LTRLFEQPASLRFGLP--ADEADWARLDQALLAYRKE 328 (330)
T ss_pred EEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence 99654 3568999995 3678899999888877654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=212.53 Aligned_cols=286 Identities=17% Similarity=0.163 Sum_probs=210.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
+|...+||+.+++++|.+.+++++||+.|+..++.+++ ++||+|+++.+.|.+.+... ..+...|+++..++.+
T Consensus 58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~---- 132 (391)
T TIGR01328 58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA---- 132 (391)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC----
Confidence 57789999999999999999999999999999888887 59999999999876544200 1245578888888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++.| |+|.+.+ +++|.++|+++|+++|+|++++.+.. +. ++.
T Consensus 133 -d~e~l~~~i~--------~~tklV~le~p~N-p~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~---~~---~~~ 193 (391)
T TIGR01328 133 -IPEEVKAHIK--------DNTKIVYFETPAN-PTMKLID---MERVCRDAHSQGVKVIVDNTFATPML---TN---PVA 193 (391)
T ss_pred -CHHHHHHhhc--------cCCeEEEEECCCC-CCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc---CC---chh
Confidence 8999999988 7899999977655 9999887 89999999999999999999754322 22 233
Q ss_pred cCccEEEEeccccCCCce---eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.++|+++.|++|++|++. ||+++++++++++++........+...++..++.+..+++.... ++++..+++.++.+
T Consensus 194 ~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~~-r~~~~~~na~~la~ 272 (391)
T TIGR01328 194 LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLNI-RMKRHSENAMKVAE 272 (391)
T ss_pred cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcHHH-HHHHHHHHHHHHHH
Confidence 478999999999998653 68899999998888754332111233466667777777776555 78889999999999
Q ss_pred HHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----
Q 018243 273 GLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE----- 321 (359)
Q Consensus 273 ~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~----- 321 (359)
.|++.|+++ +..|. ..+..+.|.++. ......+|.+.|+--.+.. .|.
T Consensus 273 ~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~ 351 (391)
T TIGR01328 273 YLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG-GFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHA 351 (391)
T ss_pred HHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHHhCCcceEecCCCCCcccCcCCCccccc
Confidence 999987764 32221 236678888864 2234567777764322211 011
Q ss_pred ------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 ------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.+|+++. + |+.+.+++.|.++++.
T Consensus 352 ~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 352 VVPKEEREAAGITDGMIRLSVG--L--EDADDLIADLKQALDA 390 (391)
T ss_pred cCCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHHHhh
Confidence 1346999985 3 5788888888888764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=211.62 Aligned_cols=288 Identities=20% Similarity=0.166 Sum_probs=214.7
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|....+|+.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|.+..... ..+...|+++..++.
T Consensus 62 ~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~---- 136 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET---- 136 (398)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC----
Confidence 468889999999999999999999999999999988887 59999999999987653200 124456877776654
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
.|++++++.++ +++++|+++++. ||||.+.+ +++|.++|+++|+++|+|++|+.+.. .. ++
T Consensus 137 -~d~e~l~~~i~--------~~tklV~ie~p~-NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~---~~---~l 197 (398)
T PRK08249 137 -GDHEQIEAEIA--------KGCDLLYLETPT-NPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN---QN---PL 197 (398)
T ss_pred -CCHHHHHHhcC--------CCCeEEEEECCC-CCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc---CC---ch
Confidence 38999999998 789999996655 59999988 78999999999999999999753221 11 22
Q ss_pred hcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
..++|+++.|+||+++++ .||++++++++.+.++..+...+... ++..++.+..+++.... ++++..+++..+.
T Consensus 198 ~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~--s~~~a~l~l~~l~tL~~-R~~~~~~na~~la 274 (398)
T PRK08249 198 ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM--DPMSAYLILRGMKTLKL-RVRQQQESAMALA 274 (398)
T ss_pred hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCcchHHH-HHHHHHHHHHHHH
Confidence 247899999999999864 46888899999998887777666544 66677777777776655 7788899999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC----
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---- 321 (359)
+.|++.|.++ +..|. ..+..+.|.+.. ......+|.+.|+--.+.+. |.
T Consensus 275 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~ 353 (398)
T PRK08249 275 KYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG-GMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSH 353 (398)
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC-CHHHHHHHHHhCCcceEccCCCCCCceeeCCccccc
Confidence 9999987664 33321 246677788864 22345677777643222111 10
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.++.+|+++. + |+.+.+++.|.++++.+..
T Consensus 354 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~~~~ 396 (398)
T PRK08249 354 VENTLEERAALGIPEGLVRISVG--I--EDTEDLIADLEQAFAHLES 396 (398)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHHhhh
Confidence 2356999985 3 5788888888888877543
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=216.34 Aligned_cols=304 Identities=13% Similarity=0.129 Sum_probs=207.9
Q ss_pred cccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcC-Ce
Q 018243 5 TVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRG-SE 80 (359)
Q Consensus 5 ~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g-~~ 80 (359)
.|+|..+.+..+. +.+ .+. ....|... ...+|++++++++|.+. .+++++|+ +++..++.+++ ++| ++
T Consensus 33 ~~~l~~ne~~~~~~~~~--~~~----~~~~Yp~~-~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d~ 104 (354)
T PRK04635 33 DIWINANESPFNNEYKL--DLA----RLNRYPEC-QPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC-EPGQDS 104 (354)
T ss_pred cEEeeCCCCCCCCChhh--hhH----HhccCCCC-CHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc-CCCCCe
Confidence 4778777555443 332 111 22335443 47899999999999865 36666665 55555555555 578 89
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|.. +. ..++..|++++.++.++++.+|.+.++. + +++++|+++ .+|||||.+++.+++.
T Consensus 105 vlv~~P~y~~-y~--~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~---------~~~~li~i~-nP~NPTG~~~~~~~l~ 170 (354)
T PRK04635 105 IACFGPTYGM-YA--ISAETFNVGVKALPLTADYQLPLDYIEQ-L---------DGAKLVFIC-NPNNPTGTVIDRADIE 170 (354)
T ss_pred EEEcCCChHH-HH--HHHHHcCCEEEEEecCCCCCCCHHHHHh-c---------cCCCEEEEe-CCCCCCCccCCHHHHH
Confidence 9999999654 44 3477889999999887778889988862 2 368899996 5566999999988888
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-CccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
+|++.|+ +++||+||+|.-.. ...+...+.. ...++++ |+||++|.++. ||+++++++++.+......+
T Consensus 171 ~l~~~~~--~~~vivDeay~~~~---~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~-- 243 (354)
T PRK04635 171 QLIEMTP--DAIVVVDEAYIEFC---PEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAPY-- 243 (354)
T ss_pred HHHHhCC--CcEEEEeCchHhhc---cCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcCCC--
Confidence 8888765 49999999964322 1222222221 2334444 99999985443 88999999998876543322
Q ss_pred CcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 237 GMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+. +...+.++...+.+ ..++.++.+.++++.+.+.|++++++++. + ..++++|+.++. ..++.+.|.
T Consensus 244 ~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~-~~g~f~~~~~~~-----~~~~~~~l~ 314 (354)
T PRK04635 244 PV--PLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-E-GNGNYVLAKFDD-----VDAVFKALW 314 (354)
T ss_pred CC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-C-CCCcEEEEECCC-----HHHHHHHHH
Confidence 22 23333444444432 22334556777889999999998557764 3 367888888753 457788889
Q ss_pred hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 313 ~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++||.+...+ .+++||++ .+++++++++++|++.
T Consensus 315 ~~gv~v~~~~~~~~~~~lRis~---~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 315 DAGIVARAYKDPRLANCIRFSF---SNRAETDKLIGLIRNQ 352 (354)
T ss_pred HCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence 9999985442 46899998 4789999999999754
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=214.65 Aligned_cols=314 Identities=22% Similarity=0.253 Sum_probs=228.1
Q ss_pred ccccCCCCCChHHHHHHHHHcCCC----CC--CccCC----ChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHH
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEV----DD--DVLMH----DPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~----~~--~~~~~----~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~ 72 (359)
|.|.+.....+++.+.+++.+... +. ..+.. .+...++++.+++++|.+. .++++|+|.++..++..
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 456666666666777777766421 11 11221 3345789999999999987 36788888888888888
Q ss_pred hh--hhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 73 HC--ETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 73 ~~--~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+. .++|++|++.+..|++..... ...+..|+++..++.+.++.+|++++++.++ +++++|++.+..+ .
T Consensus 81 l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~--------~~~~lv~~~~~~~-~ 151 (371)
T PF00266_consen 81 LLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN--------PDTRLVSISHVEN-S 151 (371)
T ss_dssp HHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH--------TTESEEEEESBET-T
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc--------cccceEEeecccc-c
Confidence 82 258999999999998887211 2244679999999888888999999999998 8999999966655 8
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKAR 228 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~ 228 (359)
||...| +++|.++|+++|+++++|.+|++|... ..+..+ ++|++++|.+| |++|.| |+++.+++..++++
T Consensus 152 tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~---id~~~~--~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~ 222 (371)
T PF00266_consen 152 TGVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVP---IDLDEL--GADFLVFSSHK-LGGPPGLGFLYVRPEAIERLR 222 (371)
T ss_dssp TTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS-----TTTT--TESEEEEESTS-TTSSSTEEEEEEEHHHHHHHH
T ss_pred ccEEee---eceehhhhhccCCceeEechhcccccc---cccccc--ccceeeecccc-cCCCCchhhheehhhhhhccc
Confidence 999988 899999999999999999998776553 334444 78999999999 777888 99999998888863
Q ss_pred HHHHh---------------------hCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 229 RLRKT---------------------LGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 229 ~~~~~---------------------~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
..... .+++. +.....+...++ +...+...++..++.+++.+.|++++++.+.
T Consensus 223 p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~--~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~ 300 (371)
T PF00266_consen 223 PAKPGGGYLDFPSLQEYGLADDARRFEGGTP--NVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVL 300 (371)
T ss_dssp TSSSSSSTTTHHHHHHHCHHSTTTGSSSSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEES
T ss_pred cccccccccccccchhcccccccccccccce--eeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEe
Confidence 11110 01122 112222222333 2334446677888899999999999888874
Q ss_pred cC---CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHH
Q 018243 284 VD---AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 284 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~ 342 (359)
.+ .....++.+.++. .+..++.+.|.++||.+..+. .+++|++++..++++|++++
T Consensus 301 ~~~~~~~~~~i~~~~~~~---~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 301 GPDDEPRRPSIVSFNLPG---SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp SSSCGGBGTTEEEEEETT---SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred eecccccccceEEEeecC---CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 32 3456677788865 478999999988899997642 26899999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=213.39 Aligned_cols=300 Identities=22% Similarity=0.243 Sum_probs=208.7
Q ss_pred HHHHHHHHcCCC-CCCccCCChHHHHHHHHHH----HHhCCC----CeEEcCCchHHHHHHHHHhhhh-----------c
Q 018243 18 EAMRAAMASAEV-DDDVLMHDPTAFRLETEMA----KVMGKE----AGLFVPSGTMGNLISVLVHCET-----------R 77 (359)
Q Consensus 18 ~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la----~~~~~~----~~~~~~~gt~a~~~~l~~~~~~-----------~ 77 (359)
..+.+.+..... ....|+.++...++|++++ +++|.+ ..++++|||+|+..++.+++.+ +
T Consensus 13 ~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~ 92 (345)
T cd06450 13 ALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRG 92 (345)
T ss_pred HHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccc
Confidence 344444444332 2334777777777777754 555875 4689999999999999988631 2
Q ss_pred --CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 78 --GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 78 --g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
+..|+++.++|++... . +...|.+++.++.++++.+|+++|++.+++.... ..++++|++.+ ++||||.+.+
T Consensus 93 ~~~~~v~~~~~~h~~~~~-~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~v~~~~-~~~~tG~~~~ 166 (345)
T cd06450 93 IDKLVIVCSDQAHVSVEK-A--AAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAE--GLNPIMVVATA-GTTDTGAIDP 166 (345)
T ss_pred cCCeEEEEcCcchhHHHH-H--HHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHC--CCCcEEEEEec-ccCCCCCCCC
Confidence 3378889999988654 2 5566889999988777889999999999731000 02677777744 5569999755
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-hhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT 233 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~ 233 (359)
+++|.++|+++|+++|+|++|+.+.......... .-..++|++++|+||++++|.| |+++.+
T Consensus 167 ---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~------------- 230 (345)
T cd06450 167 ---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------------- 230 (345)
T ss_pred ---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------
Confidence 8999999999999999999986655432111110 1113688999999999988777 666544
Q ss_pred hCCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc--hHHHHHHHHHH
Q 018243 234 LGGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED--SKLYAACLLKK 310 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 310 (359)
.....+++..+ ....++++++..++++++.+.|++++++++..+ ...+++.+.++.. .+.+..++.++
T Consensus 231 --------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~iv~f~~~~~~~~~~~~~~i~~~ 301 (345)
T cd06450 231 --------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE-PNLSLVCFRLKPSVKLDELNYDLSDR 301 (345)
T ss_pred --------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceeEEEEEECCcchhhHHHHHHHHH
Confidence 11112222222 233444777888899999999999988887543 4677888877651 03567789999
Q ss_pred HHhcCceeccC----CCcEEEEEeCCCC-CHHHHHHHHHHHHH
Q 018243 311 LEEHGVLVMPE----SSTRVRIVVHHQI-SANDVHYTLSCFQK 348 (359)
Q Consensus 311 l~~~gi~~~~~----~~~~lRi~~~~~~-~~~~i~~~~~~l~~ 348 (359)
|.++|+.+.+. ...++|++++..+ +++|++++++.|++
T Consensus 302 L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 302 LNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 98887655332 3568999998664 99999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-28 Score=215.63 Aligned_cols=322 Identities=15% Similarity=0.148 Sum_probs=214.7
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCC-----Ch----HHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMH-----DP----TAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~----~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
.++++...++..++|.+..+..........|.. .. ...++++.+++++|.+ ..+++++|+++...++..
T Consensus 21 ~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~ 100 (398)
T cd00613 21 SMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLA 100 (398)
T ss_pred CcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHH
Confidence 347888888888887666654433212222332 22 3356777788888887 456777777666666655
Q ss_pred hhhhc--CCeEEecCCCcceeeccccccccCC----ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 73 HCETR--GSEVILGDNSHIHIYENGGISTIGG----VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 73 ~~~~~--g~~vl~~~~~~~~~~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
+...+ |++|+++++.|.+... .+...+ .+++.++.++++.+|++++++.+. +++++|+++++
T Consensus 101 ~~~~~~~gd~Vl~~~~~h~~~~~---~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~t~~viv~~~- 168 (398)
T cd00613 101 AIRAYHKRNKVLVPDSAHPTNPA---VARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS--------EEVAALMVQYP- 168 (398)
T ss_pred HHhcccCCCEEEEcCccCcchHH---HHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC--------CCeEEEEEECC-
Confidence 55445 9999999999988754 133333 788888877677889999999998 78999999664
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCC-----CceeeEEecCH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLG-----APVGSVIVGSK 221 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g-----~~~gg~~~~~~ 221 (359)
+ ++|.+.+ .+++|+++|++||+++|+|++|..+... ..... .++|+++.|+||+++ +|.+|+++.++
T Consensus 169 ~-~~G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~~---~~~~~--~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~ 240 (398)
T cd00613 169 N-TLGVFED--LIKEIADIAHSAGALVYVDGDNLNLTGL---KPPGE--YGADIVVGNLQKTGVPHGGGGPGAGFFAVKK 240 (398)
T ss_pred C-CCceecc--hHHHHHHHHHhcCCEEEEEeccccccCC---CChHH--cCCCEEEeeccccCCCCCCCCCceeEEEEhh
Confidence 4 7899843 5799999999999999999987543321 11122 278999999999982 23448888888
Q ss_pred HHHHHHHHH------------------H---------HhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHH
Q 018243 222 EFIKKARRL------------------R---------KTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 222 ~~~~~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l 270 (359)
++.+.+... . ...............++...+ +...++..++..++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l 320 (398)
T cd00613 241 ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYL 320 (398)
T ss_pred hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 777653110 0 000001111122222222222 234444677888999999
Q ss_pred HHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---CCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 271 AEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE---SSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 271 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
++.|+++++... ........+++.++...+.+..++.+.|.++||.+... +...+|++++..++++|+|++++.|
T Consensus 321 ~~~L~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 321 AKRLKEVGGVLP-FNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred HHHHHhcCCccc-CCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 999999844332 11122334566665311247789999999999987442 5678999999999999999998864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=213.03 Aligned_cols=328 Identities=16% Similarity=0.149 Sum_probs=220.8
Q ss_pred cccccccCCCCC----ChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTVT----KPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~~----~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++... ..+|.+.+++.+....... ....+....+++.++++++.+.+++++||++|+..++..++.
T Consensus 31 ~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~ 110 (400)
T PTZ00125 31 KKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARK 110 (400)
T ss_pred CEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 357899886333 3468999988875432111 112567788999999999888889999999999999998752
Q ss_pred h---------cCCeEEecCCC-cceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 76 T---------RGSEVILGDNS-HIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 76 ~---------~g~~vl~~~~~-~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
. .+++|+..+.+ |..... . ....+.. +..++. .|++++++.++.
T Consensus 111 ~~~~~~~~~~~~~~vl~~~~~~Hg~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~------ 176 (400)
T PTZ00125 111 WGYEVKGIPENQAKIIFCNGNFSGRTIG--A-CSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQD------ 176 (400)
T ss_pred HHHhccCCCCCCCeEEEECCCcCCccHH--H-HhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCC------
Confidence 1 23566655554 444332 1 2221211 112222 289999999863
Q ss_pred CCceeEEEEeccccCCCceecC-hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-h-hhcCccEEEEeccccCC
Q 018243 134 YPTTRLICLENTHANCGGRCLS-VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-R-LVQAADSASVCLSKGLG 210 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~~K~~g 210 (359)
+++++|+++++ +||||..++ .+++++|.++|++||+++|+||+|.. ++..+.... . ....+|+++ ++|+++
T Consensus 177 -~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g--~g~~G~~~~~~~~~~~pd~~~--~sK~l~ 250 (400)
T PTZ00125 177 -PNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHDHEGVKPDIVL--LGKALS 250 (400)
T ss_pred -CCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhhHHHhcCCCCCEEE--Eccccc
Confidence 57899999776 569999886 46799999999999999999999742 222232111 1 112456654 569997
Q ss_pred Cce-e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEe
Q 018243 211 APV-G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVD 283 (359)
Q Consensus 211 ~~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~ 283 (359)
++. . |+++.++++.+.+.... .+.++..++..++++..+++...+ ...++..++.+++++.|+++ +.+...
T Consensus 251 ~g~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 328 (400)
T PTZ00125 251 GGLYPISAVLANDDVMLVIKPGE--HGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEI 328 (400)
T ss_pred CCCcCcEEEEEcHHHHhhccCCC--CCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 644 3 77888999888764322 233334455666666666654332 23445556667777777653 222222
Q ss_pred cCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
...+.+.++.++.+...+..++.+.|.++||.+.|.+...+|++++..++++++++++++|.++++++.
T Consensus 329 --~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 329 --RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred --ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 236677777776422356778999999999999998888999999888999999999999999998874
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=209.55 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=210.7
Q ss_pred ccccccCCCCC-ChH-HHH-HHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcC
Q 018243 4 RTVDLRSDTVT-KPT-EAM-RAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRG 78 (359)
Q Consensus 4 ~~id~~~~~~~-~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g 78 (359)
..+||+++-+. +|+ +.+ ..++. .|. .+. .+|++.+++++|.+. .+++++|++..+..+..++ ++|
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~~~~~-------~Yp-~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~~-~~g 94 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPADAWR-------RLP-EDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPALL-PRG 94 (339)
T ss_pred hhceeccCCCCCCCCCCCCCHHHHH-------hCC-Cch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHhc-CCC
Confidence 35889888555 333 221 11221 143 344 899999999999963 5777887776666666665 466
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
+ |+++.|+|.. +. ..++..|++++.++.+. + .+. ..++++++++| |||||.+++.++
T Consensus 95 ~-v~v~~P~y~~-y~--~~~~~~g~~~~~v~~~~------~----~~~--------~~~~~v~l~nP-nNPTG~~~s~~~ 151 (339)
T PRK06959 95 R-VGIAPLAYSE-YA--PAFARHGHRVVPLDEAA------D----TLP--------AALTHLIVVNP-NNPTAERLPAAR 151 (339)
T ss_pred e-EEEcCCCcHH-HH--HHHHHCCCEEEeecccc------h----hcc--------ccCCEEEEeCC-CCCCCCCCCHHH
Confidence 5 8899999655 44 34778898888886531 1 222 34457777565 679999999999
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
++++++.|++++.++|+||+|..... ..+...+....+++++ |+||.||.|+. ||+++++++++.++.....++
T Consensus 152 l~~l~~~~~~~~~~vI~DEay~~~~~---~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~~ 228 (339)
T PRK06959 152 LLRWHAQLAARGGTLIVDEAFADTLP---AASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGAWT 228 (339)
T ss_pred HHHHHHHHHHcCCEEEEECCCccCCC---cccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCCCC
Confidence 99999999999999999999643221 1223233222335555 99999996544 999999999999877654332
Q ss_pred CCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 236 GGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
.+...+.++...+ ..+.++.++++.++++++.+.|+++ |+.+. ..++++|+.++ +..++.+.|.+
T Consensus 229 ----vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~---~~~~f~~~~~~-----~~~~l~~~l~~ 295 (339)
T PRK06959 229 ----VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVH---ATPLFSWTDDP-----RAAALHAALAR 295 (339)
T ss_pred ----CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc---CcceEEEEeCC-----CHHHHHHHHHh
Confidence 2344455555555 3444556677888899999999998 87763 24677888764 34678999999
Q ss_pred cCceeccC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 314 HGVLVMPE-SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 314 ~gi~~~~~-~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+||.+... ...++||++ ..+.++.++++++|+++++.+..
T Consensus 296 ~GI~vr~~~~~~~lRisi--~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 296 RGIWTRYFAPPPSVRFGL--PADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred CCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999654 346899998 35778999999999988877653
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-27 Score=210.34 Aligned_cols=287 Identities=24% Similarity=0.233 Sum_probs=207.8
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|....+|+.+++++|.+.+++++||+.|+..++..++ ++||+|+++.+.|...+... ..+...|+++..++..
T Consensus 63 ~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 138 (403)
T PRK07503 63 SNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT--- 138 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC---
Confidence 367789999999999999999999999999999988876 69999999999876544200 1245578888888654
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++ +||||.+.+ +++|.++|+++|+++|+|++|+.+.. +.+ +
T Consensus 139 --d~~~l~~~i~--------~~tklV~le~p-~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~---~~~---l 198 (403)
T PRK07503 139 --DPAALKAAIS--------DKTRMVYFETP-ANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL---QRP---L 198 (403)
T ss_pred --CHHHHHHhcC--------ccCcEEEEeCC-CCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc---CCc---h
Confidence 8899999998 78999999765 559999887 89999999999999999999754321 222 2
Q ss_pred hcCccEEEEeccccCCCce---eeEEecCHHHHHHHHHH--HHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRL--RKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL 269 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (359)
..++|+++.|++|+++++. ||+++.++++.++++.. ....+ ..+++..++.+...++.... +.++..+++..
T Consensus 199 ~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g--~~~s~~~a~l~l~~L~tl~~-r~~~~~~na~~ 275 (403)
T PRK07503 199 ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTG--AVMSPFDAFLLMRGLKTLAL-RMDRHCASAQA 275 (403)
T ss_pred hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcC--CCCCHHHHHHHHcCcchHHH-HHHHHHHHHHH
Confidence 2378999999999998754 68888889888887643 33334 33466777777777776655 77788899999
Q ss_pred HHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC--
Q 018243 270 LAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE-- 321 (359)
Q Consensus 270 l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~-- 321 (359)
+.+.|++.|.++ +..|. ..+.++.+.++.. ......|.+.|+-..... .|.
T Consensus 276 ~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~-~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~ 354 (403)
T PRK07503 276 VAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGG-IAAGRRFMNALQLFARAVSLGDAESLAQHPASM 354 (403)
T ss_pred HHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCC-HHHHHHHHHhCCcceeecccCCCCccCcCCCCC
Confidence 999999987664 22221 1355677777642 224456666553221111 010
Q ss_pred ---------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 322 ---------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 322 ---------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
..+.+|+++. + |+++++++-|+++++...
T Consensus 355 ~h~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~Al~~~~ 398 (403)
T PRK07503 355 THSTYTPEERAEHGISEGLVRLSVG--L--EDVADILADLAQALDACA 398 (403)
T ss_pred ccccCCHHHHHhcCCCCCeEEEEEe--c--CCHHHHHHHHHHHHHHHH
Confidence 1346999995 3 577777777777776654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-27 Score=202.97 Aligned_cols=339 Identities=20% Similarity=0.268 Sum_probs=246.7
Q ss_pred cccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|||.||+.+. |+++++++|.. ++..|+.+|...+|++.++++||.+..+.+.+|+.+...+...++..+|+++.+
T Consensus 43 ~IDLrSDTgT~apS~~m~aAM~~---GDD~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~ 119 (467)
T TIGR02617 43 FIDLLTDSGTGAVTQSMQAAMMR---GDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGL 119 (467)
T ss_pred EEECccCCCCCCCCHHHHHHHHc---CCcccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccc
Confidence 59999999995 99999999997 788899999999999999999999999999999999999998888557887776
Q ss_pred cCC----Ccceeecc-ccccccCCccceeee----------cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 84 GDN----SHIHIYEN-GGISTIGGVHPRTVK----------NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 84 ~~~----~~~~~~~~-~~~~~~~g~~~~~v~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
... .|...+.. ++.+.+.|+.++.+. .+.+|.+|+++|++.|+.... .++..+...-++|.
T Consensus 120 ~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~----~~i~~v~~tlt~N~ 195 (467)
T TIGR02617 120 DRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP----NNVPYIVATITCNS 195 (467)
T ss_pred cccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC----CCceeeeeeEEEec
Confidence 554 34444442 245778888777652 234588999999999985311 12333333333454
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccc-hh-------hhcCchhHhhh----cCccEEEEeccccCCCceeeE
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFN-AA-------VALGVPVRRLV----QAADSASVCLSKGLGAPVGSV 216 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~-~~-------~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~ 216 (359)
-+|.++|.+.++++.++|++||+.++.|+|..+. +. .+.+.+..++. ..+|.+++|++|.+|.|.||+
T Consensus 196 ~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~ 275 (467)
T TIGR02617 196 AGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGL 275 (467)
T ss_pred CCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccce
Confidence 5799999999999999999999999999998774 32 35567766664 789999999999999999999
Q ss_pred EecCHH----HHHHHHHHHHhh-CCCc--chhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCceEecCCcc
Q 018243 217 IVGSKE----FIKKARRLRKTL-GGGM--RQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288 (359)
Q Consensus 217 ~~~~~~----~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~ 288 (359)
++++++ +.++++.....+ |..+ .+++-...+...+|++.. ++.+.......++|.+.|.+. |+.++. .+
T Consensus 276 Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~--~G 352 (467)
T TIGR02617 276 LCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI-GVVCQQ--AG 352 (467)
T ss_pred EEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC-CCcEEe--cC
Confidence 988544 334443322211 1111 123444444444564433 346667778889999999998 998864 34
Q ss_pred ceEEEEE-------eccchHHHHHHHHHHH-HhcCceeccC-----------------CCcEEEEEe-CCCCCHHHHHHH
Q 018243 289 TNIVYFE-------ITEDSKLYAACLLKKL-EEHGVLVMPE-----------------SSTRVRIVV-HHQISANDVHYT 342 (359)
Q Consensus 289 ~~~~~~~-------~~~~~~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lRi~~-~~~~~~~~i~~~ 342 (359)
+.-+++. ++. ....+..+..+| .+.||..+.- .-..+|+.+ .-..|.+++|..
T Consensus 353 ghav~iDa~~~lphip~-~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v 431 (467)
T TIGR02617 353 GHAAFVDAGKLLPHIPA-DQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFI 431 (467)
T ss_pred ccEEEEehhhhCCCCCh-hhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHH
Confidence 4445543 333 335677888899 8888875221 124589874 334688999999
Q ss_pred HHHHHHHHHHHH
Q 018243 343 LSCFQKIYAGVC 354 (359)
Q Consensus 343 ~~~l~~~~~~~~ 354 (359)
++++..+.++-.
T Consensus 432 ~~~~~~~~~~~~ 443 (467)
T TIGR02617 432 IEAFKHVKENAP 443 (467)
T ss_pred HHHHHHHHhhhh
Confidence 999998887644
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=213.63 Aligned_cols=324 Identities=19% Similarity=0.184 Sum_probs=219.7
Q ss_pred cccccccCC---CCCChH-HHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD---TVTKPT-EAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~---~~~~~~-~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.++ ++.++. |.+.+++.+..... ..| ..+...++++.+++++|.+..++++||++|+..++..+.
T Consensus 27 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~ 105 (379)
T TIGR00707 27 KEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLAR 105 (379)
T ss_pred CEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 457999984 444444 88888887754321 222 467789999999999999988999999999999998663
Q ss_pred h--h----cCCeEEecCCCcceeeccccccccCCcccee----eecCCCCC----CCHHHHHHHhcCCCCCccCCceeEE
Q 018243 75 E--T----RGSEVILGDNSHIHIYENGGISTIGGVHPRT----VKNNQDGT----MDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 75 ~--~----~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
. . ++++|++++++|..... . ....+..... .+...+.. .|++.+++.++ +++++|
T Consensus 106 ~~~~~~~~~~~~vi~~~~~yh~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v 174 (379)
T TIGR00707 106 KYTGDKGKEKKKIIAFENSFHGRTM-G--ALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID--------DETAAV 174 (379)
T ss_pred HHhhccCCCCCeEEEECCCcCCccH-H--HHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh--------hCeeEE
Confidence 1 1 26899999888644322 1 1111111110 11111111 18999999988 678899
Q ss_pred EEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCcee-eE
Q 018243 141 CLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAPVG-SV 216 (359)
Q Consensus 141 ~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~~g-g~ 216 (359)
++++ .++++|.. ++.+++++|.++|+++|+++|+||+|.. +...+. .........|++ ++||.++.+.. |+
T Consensus 175 ~~~p-~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~--~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~ 249 (379)
T TIGR00707 175 IVEP-IQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG--IGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGA 249 (379)
T ss_pred EEEc-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhhhHHhcCCCCCEE--EEcccccCCcccEE
Confidence 9955 46688864 6889999999999999999999999752 222222 111222234544 67899984333 78
Q ss_pred EecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCceE--ecCCccceEEE
Q 018243 217 IVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRV--DVDAVETNIVY 293 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~--~~~~~~~~~~~ 293 (359)
+++++++++.+..... +.++..++..++++..+++... ....++..++++++++.|+++ +... ...+..+.+++
T Consensus 250 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~ 326 (379)
T TIGR00707 250 TLAKEEVAEAFTPGDH--GSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLG 326 (379)
T ss_pred EEEcHHHHhhhcCCCC--CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEE
Confidence 8889888888654222 2223335566666666665322 235566777778888887765 2221 11123677888
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.++. +..++.+.|.++||.+.|.+..++|++++...+++++++++++|++++
T Consensus 327 ~~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 327 IELEA----PCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred EEecC----cHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 88765 357899999999999999877899999987899999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=207.04 Aligned_cols=300 Identities=16% Similarity=0.117 Sum_probs=205.2
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC---C-CeEEcCCchH-HHHHHHHHhhh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK---E-AGLFVPSGTM-GNLISVLVHCE 75 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~---~-~~~~~~~gt~-a~~~~l~~~~~ 75 (359)
..|+|..+.+.. |++.+.+++.+.... ...|. .++..++++.++++++. + ..+++++|++ ++..++.. +
T Consensus 20 ~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~-~- 96 (335)
T PRK14808 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM-F- 96 (335)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHH-h-
Confidence 458888775554 458888888765432 12243 35789999999999983 2 2466666654 55555444 3
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
+.|++++|+|.... ..++..|.+++.++.+.++.++... ++ .++++++ +.+|||||.+++
T Consensus 97 ---d~v~v~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~----~~---------~~~~i~i-~nP~NPTG~~~s 156 (335)
T PRK14808 97 ---DRSVFFPPTYSCYR---IFAKAVGAKFLEVPLTKDLRIPEVN----VG---------EGDVVFI-PNPNNPTGHVFE 156 (335)
T ss_pred ---CcEEECCCCHHHHH---HHHHHcCCeEEEecCCCcCCCChhH----cc---------CCCEEEE-eCCCCCCCCCcC
Confidence 56999999976644 3488899999999877666554321 22 3567777 566779999999
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHH
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLR 231 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~ 231 (359)
.+++++|+ +++++||+||+|... . +.+..+.. ....++++ |+||.+|.++. ||+++++++++.+....
T Consensus 157 ~~~l~~l~----~~~~~ii~DE~Y~~f--~--~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~ 228 (335)
T PRK14808 157 REEIERIL----KTGAFVALDEAYYEF--H--GESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVR 228 (335)
T ss_pred HHHHHHHH----hcCCEEEEECchhhh--c--CCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhc
Confidence 87776665 489999999996432 1 21222221 12245554 99999996543 99999999999887655
Q ss_pred HhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHH
Q 018243 232 KTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLK 309 (359)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
..++ . +.....++..+++ +...+..+...++++.+.+.|++. |+++. ++.++|+|+.++.. +..++.+
T Consensus 229 ~~~~--~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~g~f~~~~l~~~---~~~~~~~ 298 (335)
T PRK14808 229 LPFN--V--SYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT--DSRGNFVFIFMEKE---EKERLLE 298 (335)
T ss_pred CCCC--C--CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC--CCCCeEEEEeCCCc---cHHHHHH
Confidence 3322 2 2333344444443 223335556667788899999988 88764 34788999998752 5578999
Q ss_pred HHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 310 KLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 310 ~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+|.++||.+... ..++||++ .+.++.+++++.|++
T Consensus 299 ~l~~~Gi~V~~~-~~~~Risi---~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 299 HLRAKNIAVRSF-REGVRITI---GKREENDMILKELEV 333 (335)
T ss_pred HHHHCCeEEEEC-CCCeEEec---CCHHHHHHHHHHHHh
Confidence 999999999765 36799998 467899999998874
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=209.01 Aligned_cols=286 Identities=19% Similarity=0.199 Sum_probs=211.2
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+|+.+++++|.+.++++++|+.|+..++..++ ++||+|+++.+.|.+..... ......|++++.++.
T Consensus 64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~----- 137 (398)
T PRK07504 64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG----- 137 (398)
T ss_pred CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----
Confidence 57789999999999999999899999999988887777 59999999999877643200 113456878777752
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+|++++++.++ +++++|+++++.| |+|.+.+ +++|.++|+++|+++|+|++|+.+.. . . +..
T Consensus 138 ~d~e~l~~ai~--------~~tklV~lesp~N-ptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~---~-~--~~~ 199 (398)
T PRK07504 138 LDLDNWEKAVR--------PNTKVFFLESPTN-PTLEVID---IAAVAKIANQAGAKLVVDNVFATPLF---Q-K--PLE 199 (398)
T ss_pred CCHHHHHHhcC--------cCceEEEEECCCC-CCcEecC---HHHHHHHHHHcCCEEEEECCcccccc---C-C--chh
Confidence 58999999998 7899999977655 9999988 89999999999999999999754332 1 1 122
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHH-HHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIK-KARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|+||+++++ .||+++++++.+. .++......+... ++..++.++.+++.... ++++..+++..+.
T Consensus 200 ~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~--s~~~A~~~l~~L~tl~~-R~~~~~~na~~la 276 (398)
T PRK07504 200 LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSL--SPFNAWTLLKGLETLPV-RVRQQTESAAAIA 276 (398)
T ss_pred hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCC--CHHHHHHHHhccchHHH-HHHHHHHHHHHHH
Confidence 37899999999999764 4678888777664 3444444455443 66777788888887766 8888889999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC----
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---- 321 (359)
+.|++.|++. +..|. ..+.++.|.+.. .......|.+.|+--.+.+. |.
T Consensus 277 ~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~ 355 (398)
T PRK07504 277 DFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG-GKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTH 355 (398)
T ss_pred HHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC-CHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCc
Confidence 9999987764 32221 236688888864 23456677777754333221 11
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
..+.+|+++. + |+.+.+++.|+++++++.
T Consensus 356 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 356 KNLSPEARAELGISEGFLRLSAG--L--EDTDDLIEDLAAALKKVR 397 (398)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhhh
Confidence 2346999985 3 577888888888887653
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.36 Aligned_cols=337 Identities=19% Similarity=0.198 Sum_probs=225.6
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCCccC----CChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDDVLM----HDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.+++ ....+|.+.+++.+.......|. ..+...++++.++++++ .+..++++||++|+..++..
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~ 115 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKL 115 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 3578998752 22356888888877553322222 36678999999999998 55678999999999999998
Q ss_pred hhh-hcCCeEEecCCCcceeeccccccccC------------CccceeeecCC------CCCCCHHHHHHHhcCCCCCcc
Q 018243 73 HCE-TRGSEVILGDNSHIHIYENGGISTIG------------GVHPRTVKNNQ------DGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 73 ~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~------~~~~~~~~l~~~l~~~~~~~~ 133 (359)
+.. .++++|++.+++|..... ...... ..+++.++.+. ++..|++.|++.++++.
T Consensus 116 ~~~~~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---- 189 (413)
T cd00610 116 ARAYTGRKKIISFEGAYHGRTL--GALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP---- 189 (413)
T ss_pred HHHHcCCCeEEEECCCcCCccH--HHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC----
Confidence 752 367888888876655432 112211 22345555542 23348889999888421
Q ss_pred CCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc
Q 018243 134 YPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~ 212 (359)
.+++++++++ .++++|..+ +.+++++|.++|++||+++|+||+|........+.........+|++ +++|+++++
T Consensus 190 -~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g 265 (413)
T cd00610 190 -EEVAAVIVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGG 265 (413)
T ss_pred -CCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCc
Confidence 3577888855 555889866 66889999999999999999999985321111111111121234544 667999764
Q ss_pred ee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC---CceEecCCc
Q 018243 213 VG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK---GLRVDVDAV 287 (359)
Q Consensus 213 ~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~ 287 (359)
.. |++++++++++.+.........++..++..++++..+++...+ +..++..++.+++++.|+++. +... ....
T Consensus 266 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~ 344 (413)
T cd00610 266 LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVG-DVRG 344 (413)
T ss_pred cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEE-Eeec
Confidence 33 6778888888875111122233444556666666666654332 356677778888888887651 1111 1134
Q ss_pred cceEEEEEeccch------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITEDS------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 288 ~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.++++.+.... ......+.+.|.++||.+.+++...+|++++..++++++++++++|++++
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 345 RGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 6788888876521 14677899999999999998877899999998899999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=209.23 Aligned_cols=300 Identities=19% Similarity=0.244 Sum_probs=220.0
Q ss_pred cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-C
Q 018243 34 LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-Q 112 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~ 112 (359)
+..++...++|+.+++++|.++++.++||++|+..++.++..++||+|+++.++|.+... .+...|++++.++.+ +
T Consensus 25 ~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~---~~~~~G~~~~~~~~~~~ 101 (380)
T TIGR03588 25 LTQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATAN---CALYCGAKVDFVDIDPD 101 (380)
T ss_pred ccCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH---HHHHcCCEEEEEecCCC
Confidence 455678899999999999999999999999999999998833699999999999877654 266789999999874 4
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
++.+|++++++.+++.. .+++++|++.+ ++|...+ +++|.++|++||++||+|++|++|.. ..+....
T Consensus 102 ~~~~d~~~l~~~i~~~~----~~~t~~v~~~~----~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~~~~g 169 (380)
T TIGR03588 102 TGNIDEDALEKKLAAAK----GKLPKAIVPVD----FAGKSVD---MQAIAALAKKHGLKIIEDASHALGAE-YGGKPVG 169 (380)
T ss_pred cCCcCHHHHHHHhhccc----CCCceEEEEeC----CCCccCC---HHHHHHHHHHcCCEEEEECCCcccCc-cCCEeCC
Confidence 67789999999998321 03577887633 5687665 89999999999999999999988765 2333222
Q ss_pred hhhcCccEEEEecc--ccCCCceeeEEe-cCHHHHHHHHHHHHh-----------------------hCCCcchhHHHHH
Q 018243 193 RLVQAADSASVCLS--KGLGAPVGSVIV-GSKEFIKKARRLRKT-----------------------LGGGMRQVGVLCA 246 (359)
Q Consensus 193 ~~~~~~d~~~~s~~--K~~g~~~gg~~~-~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 246 (359)
.. ...|+.++|+| |+++.+.||+++ .++++.++++.++.. .|.+..++.+.++
T Consensus 170 ~~-~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa 248 (380)
T TIGR03588 170 NC-RYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAA 248 (380)
T ss_pred Cc-cccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHH
Confidence 11 14588888876 999877776555 468888877654331 1223445666667
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc---cceEEE-EEeccchHHHHHHHHHHHHhcCceec---
Q 018243 247 AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV---ETNIVY-FEITEDSKLYAACLLKKLEEHGVLVM--- 319 (359)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~~~--- 319 (359)
.+...++...+ ..++.+++++++.+.|+++|++.+..++. ..+.++ +.+....+.+.+++.+.|.++||.+.
T Consensus 249 ~g~~qL~~l~~-~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~ 327 (380)
T TIGR03588 249 LGLSQLKKLDR-FVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHY 327 (380)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCC
Confidence 67777777544 88888999999999999987776432221 122222 33432123468899999999999773
Q ss_pred -cC----------C-----------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 320 -PE----------S-----------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 320 -~~----------~-----------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
|. . ...+++++++.++++|++++++.|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 328 IPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred cccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 11 0 1458999999999999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=197.80 Aligned_cols=329 Identities=20% Similarity=0.282 Sum_probs=232.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC---CccCCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD---DVLMHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.++ +....||.+.+++.+....- +..-.++...++.+.+++..+ .+..++++||++|++.+++.+.
T Consensus 42 ~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlAR 121 (404)
T COG4992 42 REYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLAR 121 (404)
T ss_pred CEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHH
Confidence 468999886 44566699999998854331 112235778899999999997 7788999999999999999998
Q ss_pred hhcC----CeEEe-cCCCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 75 ETRG----SEVIL-GDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 75 ~~~g----~~vl~-~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
...+ .+|+. .+..|.-+.- + ....+- .+..+|.+ |++.++++++ ++|
T Consensus 122 k~~~~~~k~~Iia~~nsFHGRT~g--a-lS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~--------~~t 185 (404)
T COG4992 122 KYTGDPEKSKIIAFENSFHGRTLG--A-LSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAID--------EDT 185 (404)
T ss_pred HHcCCCCCcEEEEEcCCcCCccce--e-eeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhc--------cCe
Confidence 5332 25554 4444443332 1 222221 12223333 9999999999 799
Q ss_pred eEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC--cee
Q 018243 138 RLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA--PVG 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~--~~g 214 (359)
.+|++++... -+|+. .+.+++++++++|++||+++|.||+|...... |..+.-...++..-++++.|.+|+ |.|
T Consensus 186 aAvivEPIQG-EgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRT--Gk~fA~e~~gV~PDI~tlaK~LgGG~Pig 262 (404)
T COG4992 186 AAVIVEPIQG-EGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT--GKLFAYEHYGVEPDILTLAKALGGGFPIG 262 (404)
T ss_pred EEEEEecccC-CCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCcc--chHHHHHHhCCCCCEEEeeccccCCccce
Confidence 9999999999 45664 55699999999999999999999998554332 433322222333334466688855 455
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-CCce-EecCCccceE
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL-KGLR-VDVDAVETNI 291 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~-~g~~-~~~~~~~~~~ 291 (359)
+++ .++.+.+.+. .-.+++|+..+++.++++..+++...+ ...++..+..+++.+.|+++ ..+. +..-+..+.+
T Consensus 263 A~l-a~~~~~~~~~--~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLm 339 (404)
T COG4992 263 AML-ATEEIASAFT--PGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLM 339 (404)
T ss_pred eeE-EchhhhhcCC--CCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeE
Confidence 544 4455554432 223456666678888888888865543 46667777788888888775 1111 2112456777
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 292 VYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+-+.+..+ ..+.++.+.|.++|+.+.+.+.+.+|+.++..++++++++++++|+++++....
T Consensus 340 iGiel~~~--~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 340 IGIELKEP--YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred EEEEecCc--ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 77888763 247899999999999999999999999999999999999999999999987754
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=207.99 Aligned_cols=284 Identities=20% Similarity=0.218 Sum_probs=209.5
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
.+|...++|+.++++.|.+.+++++||+.|+..++.+++ ++||+|+++...|.+.+... ..+...|++++.++..
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~--- 143 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE--- 143 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC---
Confidence 467789999999999999999999999999999998887 59999999987765554310 2245678888888654
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++.| |+|.+.+ +++|.++|+++|+++|+|++|+.+... . ++
T Consensus 144 --d~~~l~~ai~--------~~tklV~~esp~N-ptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~---~---~~ 203 (403)
T PRK07810 144 --DLSQWEEALS--------VPTQAVFFETPSN-PMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ---R---GL 203 (403)
T ss_pred --CHHHHHHhcC--------cCceEEEEECCCC-CCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC---C---hh
Confidence 8999999998 7899999977665 9999887 899999999999999999997543321 1 22
Q ss_pred hcCccEEEEeccccCCCce---eeEEecCHHHHH-HHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGSKEFIK-KARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|+++.|++|++++.. ||+++++++.+. .++.+....+... ++..++.++.+++.... ++++..+++.++
T Consensus 204 ~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~--s~~~a~l~l~~L~tl~~-R~~~~~~~a~~~ 280 (403)
T PRK07810 204 PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAL--SAFNAWVLLKGLETLAL-RVRHSNASALRI 280 (403)
T ss_pred hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCC--CHHHHHHHHhccCcHHH-HHHHHHHHHHHH
Confidence 3378999999999997643 688888777554 4554545555544 67778888888887666 889999999999
Q ss_pred HHHHhcCCCce-EecC-----C----------ccceEEEEEeccc---hHHHHHHHHHHHHhcCc----------eeccC
Q 018243 271 AEGLNQLKGLR-VDVD-----A----------VETNIVYFEITED---SKLYAACLLKKLEEHGV----------LVMPE 321 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~-----~----------~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi----------~~~~~ 321 (359)
.+.|++.|.+. +..| + ..+..+.|.+... ......+|++.|+--.+ ...|.
T Consensus 281 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~ 360 (403)
T PRK07810 281 AEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPA 360 (403)
T ss_pred HHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCCC
Confidence 99999988775 3322 1 3466788888641 12345566665532221 11121
Q ss_pred -----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 -----------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 -----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.+.+|+++. + |+++.+++.|.+++
T Consensus 361 ~~~h~~~~~~~~~~~gi~~~lvR~svG--l--E~~~dli~dl~~Al 402 (403)
T PRK07810 361 TTTHRAMGPEGRAAIGLGDGVVRLSVG--L--EDTDDLIADLDRAL 402 (403)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHhh
Confidence 2346999985 3 57888888887765
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=213.96 Aligned_cols=327 Identities=15% Similarity=0.222 Sum_probs=217.9
Q ss_pred cccccCCCCCChHHHHHHHHHcCCC--C---CCc---c----CCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEV--D---DDV---L----MHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISV 70 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~--~---~~~---~----~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l 70 (359)
.+.|.+...+.+++.+.+++.+... . ... + ...+...++|+.+++++|.+. .++++|||+++..++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l 83 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAI 83 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHH
Confidence 4788888887777888888866432 1 110 0 012456788999999999875 578888889988888
Q ss_pred HHhh---hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 71 LVHC---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 71 ~~~~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.++. .++|++|++++++|.+........+..|++++.++.+.++.+|+++|++.++ +++++|++++++
T Consensus 84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~--------~~t~lv~~~~~~- 154 (404)
T PRK14012 84 KGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMR--------DDTILVSIMHVN- 154 (404)
T ss_pred HHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcC--------CCCEEEEEECcC-
Confidence 7764 2589999999999977654111123468899999888888899999999998 678899886655
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~ 226 (359)
||||.+.| +++|.++|+++|+++|+|++|+.+.... .... .++|++++|++|.+| |.| |+++.+++....
T Consensus 155 n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~~---~~~~--~~~D~~~~s~~K~~g-p~g~G~l~~~~~~~~~ 225 (404)
T PRK14012 155 NEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKVPI---DLSK--LKVDLMSFSAHKIYG-PKGIGALYVRRKPRVR 225 (404)
T ss_pred CCccchhh---HHHHHHHHHHcCCEEEEEcchhcCCccc---Cccc--CCCCEEEEehhhccC-CCceEEEEEecCCCCC
Confidence 49999987 7999999999999999999987755431 1222 268999999999776 555 666655443222
Q ss_pred HHHHHH-------hhCCCcchhHHHHH-HHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-cc---ceEEEE
Q 018243 227 ARRLRK-------TLGGGMRQVGVLCA-AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-VE---TNIVYF 294 (359)
Q Consensus 227 ~~~~~~-------~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~---~~~~~~ 294 (359)
+..... ...++......... ++...++...+...++..++++++.+.|++++++.+..+. .. ...+++
T Consensus 226 ~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~ 305 (404)
T PRK14012 226 LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSF 305 (404)
T ss_pred CCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEE
Confidence 211000 00111111111111 1121123333346667788899999999988888764221 11 223444
Q ss_pred EeccchHHHHHHHHHHHHhcCcee----ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLV----MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.... .+++.+.|++.+|.. .+. ..+.+|+++++.++++|++++++.|+++++++
T Consensus 306 ~~~~-----~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 306 NYVE-----GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred eCcC-----HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 4432 245666665333322 111 23679999999999999999999999998876
Q ss_pred H
Q 018243 354 C 354 (359)
Q Consensus 354 ~ 354 (359)
+
T Consensus 381 ~ 381 (404)
T PRK14012 381 R 381 (404)
T ss_pred H
Confidence 4
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=208.45 Aligned_cols=328 Identities=17% Similarity=0.186 Sum_probs=222.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ +....+|++.+++.+....... ....+...++++.++++++.+.+.+++||++|+..+++.+..
T Consensus 35 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~ 114 (397)
T TIGR03246 35 KEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARR 114 (397)
T ss_pred CEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 467999884 4555569999998876543111 113566789999999999888889999999999999998843
Q ss_pred h-------cCCeEE-ecCCCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 76 T-------RGSEVI-LGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 76 ~-------~g~~vl-~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
- ..++|+ +....|.++.. + ....+. .+..++.+ |++.+++.++ +
T Consensus 115 ~~~~~~~~~r~~ii~~~~~yHG~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~--------~ 178 (397)
T TIGR03246 115 YALDKHGADKSEIVAFKNSFHGRTLF-T--VSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALIS--------D 178 (397)
T ss_pred HHHhcCCCCCCEEEEECCCcCCccHH-H--HHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhc--------c
Confidence 1 123455 45556665432 1 222221 12233333 8999999997 6
Q ss_pred ceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccCCCc
Q 018243 136 TTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~g~~ 212 (359)
++++|++++.++ ++|... +.+++++|+++|++||+++|+||+|. |. +..|... ..+...+|++ +++|.+++.
T Consensus 179 ~~aavi~Epi~~-~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~-Gr~G~~~a~~~~gv~pDi~--t~~K~lggG 253 (397)
T TIGR03246 179 KTCAVIVEPIQG-EGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GV-GRTGELYAYMHYGVTPDIL--TSAKALGGG 253 (397)
T ss_pred CeEEEEEecccC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CccccchhhhhcCCCCCEE--EeehhhhCC
Confidence 799999987655 667654 77999999999999999999999983 22 2233221 1122245654 678988632
Q ss_pred ee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCC-CceEec-CCcc
Q 018243 213 VG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLK-GLRVDV-DAVE 288 (359)
Q Consensus 213 ~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~-g~~~~~-~~~~ 288 (359)
.. |++++++++.+.+... ..+.++..++..++++..+++... ++..++..++.+++.+.|+++. .+.+.. .+..
T Consensus 254 ~pigav~~~~~i~~~~~~~--~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~ 331 (397)
T TIGR03246 254 FPIGAMLTTTEIAAHLKVG--THGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGK 331 (397)
T ss_pred cceeEEEEcHHHHHhccCC--CcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecC
Confidence 22 6677888888776422 223344445666777777775432 2366778888899999888761 111111 1234
Q ss_pred ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++.+.+..........+.+.|.++|+.+.+.+...+|++++..++++++++++++|+++++++
T Consensus 332 G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 332 GLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred ceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 55555655431112567899999999999987777899999988999999999999999988764
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=213.98 Aligned_cols=310 Identities=19% Similarity=0.188 Sum_probs=212.8
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCCc------c--C--CChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHh
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDDDV------L--M--HDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~~~------~--~--~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~ 73 (359)
+.|++...+.+++.+.+++.+....... + + ..+...++++.+++++|.+. .++++|||+++..++..+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~ 80 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV 80 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 4566776777778888888764322110 0 1 12335788899999999864 367778888888877665
Q ss_pred h---hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 C---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
. .++|++|+++...|.+...........|++++.++.+.++.+|++++++.++ +++++++++++++ +|
T Consensus 81 ~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--------~~t~lv~v~~~~n-~t 151 (364)
T PLN02651 81 MHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIR--------PDTALVSVMAVNN-EI 151 (364)
T ss_pred HHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC--------CCcEEEEEECCCC-Cc
Confidence 3 2578999999999877543111133568888888877788899999999998 6789999866554 99
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR 229 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~ 229 (359)
|...| +++|.++|+++|+++++|++|+.|... .....+ ++|++++|.||| ++|.| |+++.+++....+..
T Consensus 152 G~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~---~~~~~~--~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p 222 (364)
T PLN02651 152 GVIQP---VEEIGELCREKKVLFHTDAAQAVGKIP---VDVDDL--GVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEP 222 (364)
T ss_pred eeccc---HHHHHHHHHHcCCEEEEEcchhhCCcc---cCcccC--CCCEEEechhhh-CCCCceEEEEEcCCCCCCCCc
Confidence 99988 799999999999999999998776443 223333 789999999997 55777 888877655444322
Q ss_pred HHH-------hhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCC--c--cceEEEE
Q 018243 230 LRK-------TLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDA--V--ETNIVYF 294 (359)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~--~--~~~~~~~ 294 (359)
... ...++..... ..+...++ ....+...++..+..+++.+.|++ +|++++..+. . ...++.+
T Consensus 223 ~~~g~~~~~~~~~GT~~~~~--~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~ 300 (364)
T PLN02651 223 LMSGGGQERGRRSGTENTPL--VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNL 300 (364)
T ss_pred cccCCCccCCccCCCccHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEE
Confidence 111 1112221111 12222233 223344566777888999999986 6899886541 1 1346777
Q ss_pred EeccchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVH 340 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~ 340 (359)
.++. .+.+++.++|.+ |.+..+. .+.+|+|+++.+|++|+|
T Consensus 301 ~~~~---~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 301 SFAY---VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EeCC---CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 7764 477889999865 6663331 357999999999999975
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=193.45 Aligned_cols=315 Identities=16% Similarity=0.137 Sum_probs=226.2
Q ss_pred ccCCChHHHHHHHHHHHHhC-CC--------CeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCc
Q 018243 33 VLMHDPTAFRLETEMAKVMG-KE--------AGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGV 103 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~~~-~~--------~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~ 103 (359)
.|+.+.+..++...+.++.+ .- +.+++++.|.+++.++..++ ++||.|++..++|.+... . .+..|+
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~-s--~~a~gv 170 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQ-S--MEALGV 170 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHH-h--ccccCc
Confidence 47888889999999999766 11 12566666789999999999 599999999999888775 2 667788
Q ss_pred cceeeecCCCCCCCHHHHHHHhcCCCCC-ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccc
Q 018243 104 HPRTVKNNQDGTMDIDLIEAAIRDPKGE-IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFN 182 (359)
Q Consensus 104 ~~~~v~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~ 182 (359)
+++.|+.+++| ++++.|++.+++..-. -+.+++++++..++.+||||..++.+..++|.++|++|+++||+||.|.+.
T Consensus 171 ~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~L 249 (472)
T KOG0634|consen 171 KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFL 249 (472)
T ss_pred eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcccee
Confidence 99999887666 6999999999875322 223679999999999999999999999999999999999999999997554
Q ss_pred hhhh-cC--------ch---hH-----h-hhcCcc--EEEE-eccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcch
Q 018243 183 AAVA-LG--------VP---VR-----R-LVQAAD--SASV-CLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQ 240 (359)
Q Consensus 183 ~~~~-~~--------~~---~~-----~-~~~~~d--~~~~-s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
.+.. .+ .+ +. . +..+.| ++.. |+||.++.+.. ||+.+++.+++++-..........+.
T Consensus 250 q~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg 329 (472)
T KOG0634|consen 250 QMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSG 329 (472)
T ss_pred eccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCccc
Confidence 4331 01 00 00 0 011222 7777 99999985555 99999998888876554433322221
Q ss_pred h--HHHHHHH----HHHHHHhHHHHhhhHHHHHHHHHHHHhc-CCCc-eEecCCccceEEEEEec-------cchHHH-H
Q 018243 241 V--GVLCAAA----LVALQENVLVMLDGDHKKAKLLAEGLNQ-LKGL-RVDVDAVETNIVYFEIT-------EDSKLY-A 304 (359)
Q Consensus 241 ~--~~~~~~~----~~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~g~-~~~~~~~~~~~~~~~~~-------~~~~~~-~ 304 (359)
. .+.-+.. ..++.+++.+.+..+..++..+..+|.+ +|.. ....+|.+|.|+|++++ .. .+ .
T Consensus 330 ~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~--i~q~ 407 (472)
T KOG0634|consen 330 FSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKS--INQI 407 (472)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccc--hHHH
Confidence 1 1111111 1122245555666777888888888877 4544 23356789999999996 21 23 3
Q ss_pred H-HHHHHHHhcCceeccCC-----------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 305 A-CLLKKLEEHGVLVMPES-----------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 305 ~-~~~~~l~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+ .+...+.++||.+++|. .-++|++++ ..+.+++++.++++..++++...
T Consensus 408 ~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 408 EEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-FAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred HHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEee-cCCHHHHHHHHHHHHHHHHHHhh
Confidence 3 44445589999996662 227999998 57788999999999999988654
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=208.04 Aligned_cols=289 Identities=20% Similarity=0.231 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhh-----hcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 38 PTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCE-----TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~-----~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+...++++.+++++|.+. .+++++|++++..++.++.. .+|++|++++++|++... .++..|++++.++.
T Consensus 59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~---~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEK---AAEMLGLELRYAPL 135 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHH---HHHHcCCeEEEEee
Confidence 445889999999999874 37888899998888766542 356899999999988544 36778999999988
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC--
Q 018243 111 NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-- 188 (359)
Q Consensus 111 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-- 188 (359)
+.++.+|++++++.++ +++..+++.+ ++||||...+ +++|.++|+++|+++|+|++|+.+......
T Consensus 136 ~~~~~~d~~~l~~~l~--------~~~~~vv~~~-~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~ 203 (373)
T TIGR03812 136 DEDYTVDVKDVEDLID--------DNTIGIVGIA-GTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKG 203 (373)
T ss_pred CCCCCcCHHHHHHHHh--------hCcEEEEEEC-CCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcC
Confidence 8888899999999998 4554444334 4679999876 899999999999999999998654432110
Q ss_pred chh--Hhh-hcCccEEEEeccccCCCc--eeeEEecCHHHHHHHHHHHHhhCCCc------chhHHHHHHHHHHHH----
Q 018243 189 VPV--RRL-VQAADSASVCLSKGLGAP--VGSVIVGSKEFIKKARRLRKTLGGGM------RQVGVLCAAALVALQ---- 253 (359)
Q Consensus 189 ~~~--~~~-~~~~d~~~~s~~K~~g~~--~gg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~---- 253 (359)
... ..+ ..+.|.+++|.||++.+| .|++++.++++.+.++....+..... ..+....+++..+++
T Consensus 204 ~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~ 283 (373)
T TIGR03812 204 YNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGR 283 (373)
T ss_pred CCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCH
Confidence 000 111 126788889999975444 44667678888776542212111110 111222333334443
Q ss_pred HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-CCcEEEEEeCC
Q 018243 254 ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-SSTRVRIVVHH 332 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lRi~~~~ 332 (359)
...++..++..+++++|++.|+++ ++....+ ...+++.+.++. ..++.++|.++||.+... .+.++|++++.
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~v~~~~~~-----~~~v~~~L~~~gi~v~~~~~~~~iRis~~~ 356 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKI-GFEPVIE-PVLNIVAFEVDD-----PEEVRKKLRDRGWYVSVTRCPKALRIVVMP 356 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcC-CCceEEEEEeCC-----HHHHHHHHHHCCceeccCCCCCEEEEEEEC
Confidence 334446778889999999999998 6654333 356777777653 347999999999998655 46789999988
Q ss_pred CCCHHHHHHHHHHHHH
Q 018243 333 QISANDVHYTLSCFQK 348 (359)
Q Consensus 333 ~~~~~~i~~~~~~l~~ 348 (359)
.++++|+++++++|++
T Consensus 357 ~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 357 HVTREHIEEFLEDLKE 372 (373)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8999999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=207.85 Aligned_cols=300 Identities=16% Similarity=0.090 Sum_probs=208.7
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC-CeEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE-AGLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
+..++|..+.+..+.|.. + ........|.... ..++++.++++++.+ ..+++++|+++.+.++..++ .+| .|
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-~~g-~v 89 (330)
T TIGR01140 17 EDWLDFSTGINPLGPPVP-P---IPASAWARYPDPE-YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-APG-RV 89 (330)
T ss_pred hheeEccccCCCCCCChh-h---cchHHHhhCCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CCC-eE
Confidence 456888887665554421 1 1111223354444 499999999999986 45777777776666666666 467 79
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
++++|+|.... ..+...|.+++.++ |++++++.++ ++++++++++ +||||.+++.+++++
T Consensus 90 l~~~p~y~~~~---~~~~~~g~~~~~~~-------d~~~l~~~~~---------~~~~v~i~~p-~NPtG~~~~~~~~~~ 149 (330)
T TIGR01140 90 LVLAPTYSEYA---RAWRAAGHEVVELP-------DLDRLPAALE---------ELDVLVLCNP-NNPTGRLIPPETLLA 149 (330)
T ss_pred EEeCCCcHHHH---HHHHHcCCEEEEeC-------CHHHHHhhcc---------cCCEEEEeCC-CCCCCCCCCHHHHHH
Confidence 99999976644 34778888888875 7888888775 2457777565 669999999999999
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCC
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGG 237 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
|+++|+++|++||+|++|..... ..+...+. ...+++..|+||+||.|+- ||+++++++++.+......+
T Consensus 150 l~~~a~~~~~~ii~De~y~~~~~---~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~~--- 223 (330)
T TIGR01140 150 LAARLRARGGWLVVDEAFIDFTP---DASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGPW--- 223 (330)
T ss_pred HHHHhHhcCCEEEEECcccccCC---ccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCCC---
Confidence 99999999999999999743321 12222221 1233555699999996532 88999999888876554322
Q ss_pred cchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcC
Q 018243 238 MRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHG 315 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 315 (359)
..+...+.++...++ .+.++.++++.++++.+.+.|++++.+++. +..++++|+.++. ..++.++|.++|
T Consensus 224 -~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~f~~~~~~~-----~~~l~~~l~~~g 295 (330)
T TIGR01140 224 -TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV--GGTALFLLVRTPD-----AAALHEALARRG 295 (330)
T ss_pred -CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC--CCCCeEEEEEcCC-----HHHHHHHHHHCC
Confidence 223344444444443 334446677888999999999998556653 3477889988764 358999998899
Q ss_pred ceeccCC------CcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 316 VLVMPES------STRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 316 i~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
|.+.|+. .+++|++++ ...++ +.++++|
T Consensus 296 i~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~l 329 (330)
T TIGR01140 296 ILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEAL 329 (330)
T ss_pred EEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHhh
Confidence 9997753 358999994 44455 7777765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=202.79 Aligned_cols=336 Identities=19% Similarity=0.243 Sum_probs=241.3
Q ss_pred cccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|||.||+.+.+. +.+..++ ..++..|+.++...+||+.+++++|.++++.++|||.|+..+....+ ++||.|
T Consensus 47 ~IDLlSDS~T~aMs~~q~a~~---~vGDd~Yagd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v-~pGd~V-- 120 (460)
T PRK13237 47 YIDLLTDSGTNAMSDRQWAGM---MIGDEAYAGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI-KPGQYV-- 120 (460)
T ss_pred EEECcccCCchhccHHHHHHH---hhcchhhcCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC-CCcCEE--
Confidence 5999999999664 5655555 33788899999999999999999999999999999999998644444 689864
Q ss_pred cCCCcceeeccccccccCCccceeee----------cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVK----------NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+..+|+.... +.....|+..+.+. .+.+|.+|++.|++.|+.. +.++++++.++.+.|..+|.+
T Consensus 121 p~n~~f~Tt~--ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~----~~~~~~lV~a~itvn~~GGqp 194 (460)
T PRK13237 121 PGNMYFTTTR--YHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV----GAENIAYICLAVTVNLAGGQP 194 (460)
T ss_pred CCccchHhhH--HHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc----cCCccCceEEEEecccCCCee
Confidence 6666666665 32455666444442 1346889999999999842 113555666666666556899
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhh--------hcCchhH----hhhcCccEEEEeccccCCCceeeEEec-C
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV--------ALGVPVR----RLVQAADSASVCLSKGLGAPVGSVIVG-S 220 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~----~~~~~~d~~~~s~~K~~g~~~gg~~~~-~ 220 (359)
+|.++++++.++|++||+.+|.|.|+.++... +.+.+.. ++...+|.+++|++|.++.+.||+++. +
T Consensus 195 vs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D 274 (460)
T PRK13237 195 VSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMND 274 (460)
T ss_pred CCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECC
Confidence 99999999999999999999999999887442 3444443 334578999999999999988765555 7
Q ss_pred HHHHHHHHHHHHhh-CCCcc--hhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEe
Q 018243 221 KEFIKKARRLRKTL-GGGMR--QVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
+++.++++.+...+ |..+. +++--..+...++.+..+ ........+.++|.+.|.+. |+.+.. |.++..+++..
T Consensus 275 ~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~-Gvpv~~-p~ggH~v~vda 352 (460)
T PRK13237 275 EELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA-GVPIVE-PVGGHAVFLDA 352 (460)
T ss_pred HHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC-CCceec-CCCceEEEEEh
Confidence 88999988775543 32221 122233333334443332 46677778899999999999 999865 45666676653
Q ss_pred cc------chHHHHHHHHHHH-HhcCceeccC-----------C------CcEEEEEe-CCCCCHHHHHHHHHHHHHHHH
Q 018243 297 TE------DSKLYAACLLKKL-EEHGVLVMPE-----------S------STRVRIVV-HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 297 ~~------~~~~~~~~~~~~l-~~~gi~~~~~-----------~------~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.. .....+..+..+| .+.||..+.- + -..+|+.+ .-..|.+++|.+++++..+.+
T Consensus 353 ~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 353 RRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred HHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 21 1234677888888 8888876311 0 24589874 334688999999999998887
Q ss_pred HHH
Q 018243 352 GVC 354 (359)
Q Consensus 352 ~~~ 354 (359)
+-.
T Consensus 433 ~~~ 435 (460)
T PRK13237 433 HRE 435 (460)
T ss_pred hHh
Confidence 654
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=209.95 Aligned_cols=328 Identities=18% Similarity=0.195 Sum_probs=219.6
Q ss_pred cccccccCC---CCCCh-HHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD---TVTKP-TEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~---~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ ++.++ +|.+.+++.+...... .....+...++.+.++++.+.+..++++||++|+..++..++.
T Consensus 39 ~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~ 118 (396)
T PRK02627 39 KEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARK 118 (396)
T ss_pred CEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHH
Confidence 356899884 33455 4888888877543211 1123577788999999998888889999999999999998764
Q ss_pred hcC------CeEEecCCCcceeeccccccccCCcccee---eecCCCC----CCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 76 TRG------SEVILGDNSHIHIYENGGISTIGGVHPRT---VKNNQDG----TMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 76 ~~g------~~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
..+ ++|+...++|..... . .....+..... .+...+. ..|++++++.+. +++++|++
T Consensus 119 ~~~~~~~~~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~vii 188 (396)
T PRK02627 119 YGHKKGIEKPEIITAENSFHGRTL-A-TLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAIT--------DKTAAVML 188 (396)
T ss_pred HhcccCCCCCeEEEECCCcCcccH-H-HHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcC--------CCeEEEEE
Confidence 111 568877777544322 1 12222211110 0111110 118899999987 68999999
Q ss_pred eccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCcee-eEEe
Q 018243 143 ENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAPVG-SVIV 218 (359)
Q Consensus 143 ~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~ 218 (359)
+++ +||+| .+++.+++++|.++|++||+++|+||+|.. +...+. .........|+ .++||.++.+.. |+++
T Consensus 189 ~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g--~g~~g~~~~~~~~~~~pdi--~t~sK~~~~G~rig~~~ 263 (396)
T PRK02627 189 EPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTG--MGRTGKLFAYQHYGIEPDI--MTLAKGLGGGVPIGAVL 263 (396)
T ss_pred ecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcC--CCccCceeeehhcCCCCCE--EEEcchhhCCcccEEEE
Confidence 877 55888 678899999999999999999999999752 222221 11122223454 467899984333 7788
Q ss_pred cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecCCccceEEE
Q 018243 219 GSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVETNIVY 293 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~~ 293 (359)
+++++++.+... ....++..++..++++..+++...+ +..++..++.+++++.|.++ |.+.. .+..+.++|
T Consensus 264 ~~~~~~~~~~~~--~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~ 339 (396)
T PRK02627 264 AKEKVADVFTPG--DHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKE--VRGLGLMIG 339 (396)
T ss_pred EcHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeee--eccCcEEEE
Confidence 888888776432 2233444566677777777754322 24455555666666655543 22222 134677888
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+.. +..++.+.|.++||.+.+++..++|++++..++++++++++++|+++++++
T Consensus 340 i~~~~----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 340 IELDR----PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred EEecC----cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 88843 567899999888999998887889999888899999999999999988764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=206.44 Aligned_cols=287 Identities=16% Similarity=0.140 Sum_probs=213.6
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|.+.+... ......|+++..++.
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~----- 125 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ----- 125 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----
Confidence 67889999999999999888999999999999998887 59999999999987655311 112345667777753
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
.|++++++.++ +++++|+++++ +||||.+++ +++|.++|+++|+++|+|++|..+... .++.
T Consensus 126 ~d~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~------~pl~ 187 (388)
T PRK08861 126 SDAAALDAALA--------KKPKLILLETP-SNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ------KPLE 187 (388)
T ss_pred CCHHHHHHhcC--------cCCeEEEEECC-CCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC------CCcc
Confidence 38899999988 78999999765 559999998 789999999999999999997543221 1223
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|+||+++++. ||++++ ++++.+.++..+...|... ++..++..+.+++...- ++++..+++..+.
T Consensus 188 ~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~--~p~~a~l~~rgl~Tl~l-R~~~~~~~a~~~a 264 (388)
T PRK08861 188 LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATG--TPFDSYMTLRGIRTLGA-RMRVHEESAQQIL 264 (388)
T ss_pred cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCC--ChHHHHHHHhcCCCHHH-HHHHHHHHHHHHH
Confidence 379999999999998763 577766 5677777777777777665 56667777777776555 8889999999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC----
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---- 321 (359)
+.|++.|.+. +..|. ..+..+.|.+.. .......|.+.|+--.+.+. |.
T Consensus 265 ~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h 343 (388)
T PRK08861 265 AYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-SFEQLKVFVKALALFSLAESLGGVESLICHPASMTH 343 (388)
T ss_pred HHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccc
Confidence 9999987664 33331 346678888864 22345667776643222221 11
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
..+.||+++. + |+++.+++.|+++++++.+
T Consensus 344 ~~~~~~~~~~~gi~~~liRlsvG--l--E~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 344 RAMGEEALAEAGVSQQLLRLSVG--L--EDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred cccCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHHHHHHHh
Confidence 2346999985 3 5788888888888887754
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=206.25 Aligned_cols=307 Identities=19% Similarity=0.231 Sum_probs=220.6
Q ss_pred HHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecccccc
Q 018243 19 AMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIS 98 (359)
Q Consensus 19 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 98 (359)
+.++++.+.......++.++...++++.++++++.+..++++||++|+..++.++..++||+|++++++|.+... .+
T Consensus 12 ~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~---~~ 88 (376)
T TIGR02379 12 QELEYIAEAISEGKLSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTAN---AF 88 (376)
T ss_pred HHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHH---HH
Confidence 335555554434444555788899999999999999999999999999988888744699999999999887654 25
Q ss_pred ccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec
Q 018243 99 TIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177 (359)
Q Consensus 99 ~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~ 177 (359)
...|++++.++.+.+ +.+|++++++.++ +++++|+.. +|+|...+ +++|.++|++||++||+|+
T Consensus 89 ~~~G~~~v~vd~d~~~~~~d~~~le~~i~--------~~tk~Iip~----~~~G~~~d---~~~I~~la~~~~i~vIeDa 153 (376)
T TIGR02379 89 VLRGAKIVFVDIRPDTMNIDETLIESAIT--------HRTKAIVPV----HYAGVACD---MDTIMALANKHQLFVIEDA 153 (376)
T ss_pred HHcCCEEEEEecCCCcCCCCHHHHHHhcC--------cCceEEEEe----CCCCCccC---HHHHHHHHHHCCCEEEEEC
Confidence 667999999987755 6789999999998 678888642 37788876 7899999999999999999
Q ss_pred ccccchhhhcCchhHhhhcCccEEEEe--ccccCCC-ceeeEE-ecCHHHHHHHHHHHHh-------------------h
Q 018243 178 ARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGA-PVGSVI-VGSKEFIKKARRLRKT-------------------L 234 (359)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~d~~~~s--~~K~~g~-~~gg~~-~~~~~~~~~~~~~~~~-------------------~ 234 (359)
+|+++.. +.+..... ..|+.++| .+|.+.. +.||++ +.++++.++++.++.. .
T Consensus 154 a~~~g~~-~~~~~~g~---~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 229 (376)
T TIGR02379 154 AQGVMST-YKGRALGS---IGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDI 229 (376)
T ss_pred ccccCCc-cCCcccCC---CCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeee
Confidence 9987654 23433222 23544554 4566643 245654 5568899988876642 2
Q ss_pred CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCC--C-ceEec-CCc-c-c-eEEEEEeccchHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLK--G-LRVDV-DAV-E-T-NIVYFEITEDSKLYAACL 307 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~--g-~~~~~-~~~-~-~-~~~~~~~~~~~~~~~~~~ 307 (359)
|.++.+..+.++.+...++...+ ..++..++++++.+.|++++ + ..+.. ++. . . .++++.++. ..+.+++
T Consensus 230 g~n~~~~~~~Aa~g~~qL~~l~~-~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~r~~l 306 (376)
T TIGR02379 230 GSSYLPSELQAAYLWAQLEQADR-INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKD--EDDRNEL 306 (376)
T ss_pred cccCCccHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECC--cCCHHHH
Confidence 44455666777777777777655 77778888888888887763 2 22211 111 1 1 123455543 1367899
Q ss_pred HHHHHhcCceeccC--------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPE--------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 308 ~~~l~~~gi~~~~~--------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.|.++||.+... ....+.+++++.+++++++++++.|++++
T Consensus 307 ~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 307 IKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred HHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999987311 02358899999999999999999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=205.92 Aligned_cols=305 Identities=18% Similarity=0.215 Sum_probs=222.2
Q ss_pred HHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecccccccc
Q 018243 21 RAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTI 100 (359)
Q Consensus 21 ~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~ 100 (359)
.+++.+.......++..+....+++.+++++|.+++++++||++|+..++..+..++||+|+++.++|.+... .+..
T Consensus 14 ~~~~~~~l~~~~~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~---~~~~ 90 (375)
T PRK11706 14 LDYIQQAMSSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTAN---AFVL 90 (375)
T ss_pred HHHHHHHHHcCCccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHH---HHHH
Confidence 3444443333445566778899999999999999999999999999888877754699999999999888764 3677
Q ss_pred CCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccc
Q 018243 101 GGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179 (359)
Q Consensus 101 ~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 179 (359)
.|++++.++.+.+ +.+|++++++.++ +++++|++.+ ++|...+ +++|.++|+++|++||+|++|
T Consensus 91 ~G~~~v~~d~d~~~~~~d~~~le~~i~--------~~tk~i~~~~----~~G~~~~---~~~i~~la~~~~i~vIeD~a~ 155 (375)
T PRK11706 91 RGAKIVFVDIRPDTMNIDETLIEAAIT--------PKTRAIVPVH----YAGVACE---MDTIMALAKKHNLFVVEDAAQ 155 (375)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcC--------CCCeEEEEeC----CCCCccC---HHHHHHHHHHcCCEEEEECcc
Confidence 8999999977655 5789999999998 6788888743 5787655 899999999999999999999
Q ss_pred ccchhhhcCchhHhhhcCccEEEEecc--ccCCCcee-eEEecCHHHHHHHHHHHHh-------------------hCCC
Q 018243 180 IFNAAVALGVPVRRLVQAADSASVCLS--KGLGAPVG-SVIVGSKEFIKKARRLRKT-------------------LGGG 237 (359)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~~~g-g~~~~~~~~~~~~~~~~~~-------------------~~~~ 237 (359)
+++... .+..... ..|+.++|++ |.++.+.| ++++.++++.++++.++.. .|.+
T Consensus 156 a~g~~~-~~~~~g~---~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 231 (375)
T PRK11706 156 GVMSTY-KGRALGT---IGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSS 231 (375)
T ss_pred cccccc-CCeeeec---CcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccc
Confidence 887642 2332222 3466666665 99976555 5666678888887766532 2334
Q ss_pred cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCC---ceEecCCcc----ceEEEEEeccchHHHHHHHHHH
Q 018243 238 MRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKG---LRVDVDAVE----TNIVYFEITEDSKLYAACLLKK 310 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
..+....++.+...++...+ ..++..++.+++.+.|+++++ +.+...+.. ..++++.++. +.+.+++.+.
T Consensus 232 ~~~~~~~aa~~~~ql~~l~~-~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~l~~~ 308 (375)
T PRK11706 232 YLPSELQAAYLWAQLEAADR-INQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD--LEDRSALINF 308 (375)
T ss_pred cCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC--cCCHHHHHHH
Confidence 44456667777777777544 777888889999999988752 332111111 2244555543 2478899999
Q ss_pred HHhcCceeccC--------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 311 LEEHGVLVMPE--------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 311 l~~~gi~~~~~--------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
|.++||.+... ....+.+++++.++++|++++++.|++++
T Consensus 309 L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 309 LKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 99999985211 11248888999999999999999998764
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=207.08 Aligned_cols=295 Identities=20% Similarity=0.221 Sum_probs=216.8
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhh--------hhcCCeEEecCCCcceeeccccccccCCcccee
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHC--------ETRGSEVILGDNSHIHIYENGGISTIGGVHPRT 107 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~--------~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (359)
.++...++|+++++++|.+.+++++||++|+..++.+++ .++||+|+++.++|..... .+...|++++.
T Consensus 61 ~G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~---~v~~~G~~pv~ 137 (438)
T PRK15407 61 TGRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN---PIIQNGLVPVF 137 (438)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH---HHHHcCCEEEE
Confidence 356789999999999999999999999999999998772 3689999999999877654 25667889998
Q ss_pred eecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh
Q 018243 108 VKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA 186 (359)
Q Consensus 108 v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~ 186 (359)
++.+ .++.+|++.+++.++ +++++|+++|+. |... ++++|.++|+++|++||+|++|++|...
T Consensus 138 vdvd~~~~~id~~~le~~i~--------~~tkaVi~~~~~----G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~- 201 (438)
T PRK15407 138 VDVELPTYNIDASLLEAAVS--------PKTKAIMIAHTL----GNPF---DLAAVKAFCDKHNLWLIEDNCDALGSTY- 201 (438)
T ss_pred EecCCCcCCcCHHHHHHHcC--------cCCeEEEEeCCC----CChh---hHHHHHHHHHHCCCEEEEECccchhhhc-
Confidence 8775 568899999999998 789999997754 4433 4899999999999999999999887764
Q ss_pred cCchhHhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh--------------------------------
Q 018243 187 LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT-------------------------------- 233 (359)
Q Consensus 187 ~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~-------------------------------- 233 (359)
.+.....+. ++-++++..+|.+..+.||+++. ++++.+.++.++.+
T Consensus 202 ~g~~~G~~g-d~~~fSf~~~k~~~~geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (438)
T PRK15407 202 DGRMTGTFG-DIATLSFYPAHHITMGEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHK 280 (438)
T ss_pred CCeeeeccC-ceEEEeCCCCCCccccCceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccc
Confidence 444433332 22244445557675545666665 66676665544331
Q ss_pred -----hCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCC-ceEecCCcc---ceE-EEEEeccchHHH
Q 018243 234 -----LGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKG-LRVDVDAVE---TNI-VYFEITEDSKLY 303 (359)
Q Consensus 234 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~~~~~---~~~-~~~~~~~~~~~~ 303 (359)
.|.++.++.+.++.++..|+...+ +.++.+++++++.+.|+++++ +.+...+.. ..+ +.+.+....+.+
T Consensus 281 ~~~~~~G~n~rmsel~AAig~~qL~~l~~-~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 359 (438)
T PRK15407 281 YTYSHLGYNLKITDMQAAIGLAQLEKLPG-FIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFT 359 (438)
T ss_pred ccccccccccCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCC
Confidence 245566778888888999988766 888999999999999998865 322111112 112 223443322346
Q ss_pred HHHHHHHHHhcCceeccC----------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMPE----------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~~----------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+++.+.|.++||.+... ....+-+++++.++++++++++++|+++++
T Consensus 360 Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 360 RVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred HHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 789999999999965210 112377888888999999999999998875
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=204.21 Aligned_cols=325 Identities=17% Similarity=0.146 Sum_probs=209.4
Q ss_pred cccccccCCCCCChH------HHHHHHHHcCC-------CCCC----ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHH
Q 018243 3 TRTVDLRSDTVTKPT------EAMRAAMASAE-------VDDD----VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65 (359)
Q Consensus 3 ~~~id~~~~~~~~~~------~~~~~a~~~~~-------~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a 65 (359)
...+||.|++|..-. +++.+++.+.. .+.. .++..+...++|+.+++++|.+.++++++|+.+
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a 83 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA 83 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence 357899998776322 55555655531 1111 123456789999999999999988999999999
Q ss_pred HHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 66 ~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
+...+..+. ++++.|+++...|.+.+. +.....+ ..+.++. .|+++|++.++...... +.+.+|+++++
T Consensus 84 ~~~~~~~~~-~~~d~ii~d~~~H~sv~~--~~~~~~~-~~~~~~~-----~d~~~l~~~l~~~~~~~--~~~~~v~v~~v 152 (370)
T PRK05937 84 NLGLCAHLS-SVTDYVLWDEQVHISVVY--SLSVISG-WHQSFRH-----NDLDHLESLLESCRQRS--FGRIFIFVCSV 152 (370)
T ss_pred HHHHHHHhC-CCCCEEEEEhhhhHHHHH--HHHHcCC-ceEEecC-----CCHHHHHHHHHhhhccC--CCcEEEEEecC
Confidence 876555544 478888898999999887 2233333 3333443 38999999997421110 23556777665
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-hhh-cCccEEEEeccccCCCceeeEEecCHHH
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RLV-QAADSASVCLSKGLGAPVGSVIVGSKEF 223 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~-~~~d~~~~s~~K~~g~~~gg~~~~~~~~ 223 (359)
++ ++|.+.| +++|.++|+++|+++++|++|+.|..+..+.... .+. .+.+++..|++|.+|. .|+.+++.++.
T Consensus 153 ~s-~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~-~G~~vl~~~~~ 227 (370)
T PRK05937 153 YS-FKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGS-MGAALLSSSEV 227 (370)
T ss_pred CC-CCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhc-CceEEEcCHHH
Confidence 54 9999988 8999999999999999999998876654443221 121 1223566799999985 55435555665
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH---HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQENV---LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
.+.+......+......++...++...+++... +..+++..++.+++.+.|... + .+....+.++.
T Consensus 228 ~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~-~--------~~~~~~i~~~~-- 296 (370)
T PRK05937 228 KQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA-A--------PGCVQPIFLPG-- 296 (370)
T ss_pred HHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-C--------CCCEEEEEeCC--
Confidence 555442222121111123333333334443221 224455666666776666542 1 01122344444
Q ss_pred HHHHHHHHHHHHhcCceeccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 301 KLYAACLLKKLEEHGVLVMPE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 301 ~~~~~~~~~~l~~~gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.....+.+.|.++||.+... ....+|++++..++++|++++++.|+++++++.+
T Consensus 297 -~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 297 -ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred -hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 25678888999999987421 2457999999999999999999999999987743
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=207.96 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=223.3
Q ss_pred cccccccCCCCCC----hHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTVTK----PTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~~~----~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++.... .+|++.+++.+....... ....+...++++.++++++.+.+++++||++|+..++..++.
T Consensus 37 ~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~ 116 (401)
T TIGR01885 37 KRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARK 116 (401)
T ss_pred CEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHH
Confidence 3578999874333 358998888775432111 114577899999999999988889999999999999998753
Q ss_pred h--------c-CCeEEecCCCcc-eeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 76 T--------R-GSEVILGDNSHI-HIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 76 ~--------~-g~~vl~~~~~~~-~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
. + .+.|+..+.+|. +++. + ....+ ..+..++.+ |+++|++.+++..
T Consensus 117 ~~~~~~~~~~~~~~i~~~~~~yhg~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---- 184 (401)
T TIGR01885 117 WGYKVKGIPENQAIIVSAKGNFHGRTLG--A-ISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHG---- 184 (401)
T ss_pred HhhhhcCCCCCCCEEEEECCCcCcccHH--H-HhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcC----
Confidence 1 2 345666666644 3332 1 22221 112333433 7899999886421
Q ss_pred CCceeEEEEeccccCCCceecCh-hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-h-hhcCccEEEEeccccCC
Q 018243 134 YPTTRLICLENTHANCGGRCLSV-EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-R-LVQAADSASVCLSKGLG 210 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~~~-~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~~K~~g 210 (359)
+++.+|+++++.+ ++|...+. +++++|.++|++||+++|+||+|. | ++..+.... . ....+|+++ ++|.++
T Consensus 185 -~~~~avi~E~v~~-~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g-~g~~G~~~~~~~~~~~~di~~--~gK~l~ 258 (401)
T TIGR01885 185 -PNVCAFIVEPIQG-EAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-G-LGRTGKLLCVDHENVKPDIVL--LGKALS 258 (401)
T ss_pred -CCEEEEEEeCccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhhHHhhcCCCCCEEE--eecccc
Confidence 4678899988777 78887764 579999999999999999999974 2 322333211 1 112467665 459987
Q ss_pred Ccee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEec-CC
Q 018243 211 APVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDV-DA 286 (359)
Q Consensus 211 ~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~ 286 (359)
++.. |++++++++++.++.. ..+.++..++..++++..+++...+ ...++..++.+++++.|+++ +..+.. .+
T Consensus 259 ~g~~~ig~v~~~~~i~~~~~~~--~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l-~~~~~~~~~ 335 (401)
T TIGR01885 259 GGVYPVSAVLADDDVMLTIKPG--EHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKL-PKPIITEVR 335 (401)
T ss_pred CCCCCcEEEEEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-cCCceeEEe
Confidence 5322 6678888888876431 2233444456667777777765443 34566777889999999987 323211 12
Q ss_pred ccceEEEEEeccc-hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITED-SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+.+..+.++.+ .+.+..++.++|.++||.+.+.+...+|++++..++++++++++++|++++
T Consensus 336 g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 336 GRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 3556655555442 123678899999999999988888899999998999999999999998876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=196.85 Aligned_cols=319 Identities=20% Similarity=0.207 Sum_probs=238.8
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--e-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeec
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--G-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYE 93 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~ 93 (359)
+|+++++|.+...++..-.......++.+.+...|+.++ . ++.+|||.+++.++..++ +|||+|++.....++...
T Consensus 17 ~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-~pgdkVLv~~nG~FG~R~ 95 (383)
T COG0075 17 PPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-EPGDKVLVVVNGKFGERF 95 (383)
T ss_pred CHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCChHHHHH
Confidence 499999999976665444445667888899999999873 3 667899999999999999 499998876665555443
Q ss_pred cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEE
Q 018243 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKL 173 (359)
Q Consensus 94 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~l 173 (359)
+.++++.|++++.+..++.-.+|++++++.|++. ++.++|.+.| ..++||+..| +++|.++|++||.++
T Consensus 96 -~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~------~~~~~V~~vH-~ETSTGvlnp---l~~I~~~~k~~g~l~ 164 (383)
T COG0075 96 -AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD------PDIKAVAVVH-NETSTGVLNP---LKEIAKAAKEHGALL 164 (383)
T ss_pred -HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC------CCccEEEEEe-ccCcccccCc---HHHHHHHHHHcCCEE
Confidence 3678999999999988877889999999999953 6777888855 5569999887 899999999999999
Q ss_pred EEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH------------HHhh---CCC
Q 018243 174 HIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL------------RKTL---GGG 237 (359)
Q Consensus 174 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~------------~~~~---~~~ 237 (359)
|||.+.++|+.. ....++ +.|+++.+..|++++|.| +++..+++..+.+... ...+ +.+
T Consensus 165 iVDaVsS~Gg~~---~~vd~w--giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~ 239 (383)
T COG0075 165 IVDAVSSLGGEP---LKVDEW--GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGST 239 (383)
T ss_pred EEEecccCCCcc---cchhhc--CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCC
Confidence 999987776553 334444 899999999999999999 8888887776664321 1112 222
Q ss_pred cchhHHHH-HHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-CccceEEE-EEeccchHHHHHHHHHH
Q 018243 238 MRQVGVLC-AAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVETNIVY-FEITEDSKLYAACLLKK 310 (359)
Q Consensus 238 ~~~~~~~~-~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 310 (359)
...++... .+...++ +++++.+.+|++++++.+++.++++ |+++... ...++.+. +.++. +++..++...
T Consensus 240 p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~--g~~~~~~~~~ 316 (383)
T COG0075 240 PYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPE--GVDDKKVRRA 316 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCC--CCCcHHHHHH
Confidence 22222222 2223333 4556778889999999999999999 9997652 23454444 44444 3455455555
Q ss_pred H-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 311 L-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 311 l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+ +++|+.+.++ ....+||......+.+++...+.+|..++.++..
T Consensus 317 ~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 317 LLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred HHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 5 7779888554 4568999977789999999999999999988753
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=206.85 Aligned_cols=321 Identities=19% Similarity=0.203 Sum_probs=216.1
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++. ....+|.+.+++.+........ ...+...++.+.+++..+.+..++++||++|+..++..+..
T Consensus 29 ~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~ 108 (377)
T PRK02936 29 KTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARK 108 (377)
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 3578998884 4555588888888765432111 12344455666666655556678999999999999997653
Q ss_pred hcC-CeEEecCCC-cceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 76 TRG-SEVILGDNS-HIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 76 ~~g-~~vl~~~~~-~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
.+| ++|+..+++ |.+.+. . ....+. .+..++.+ |++.+++.++ +++++|+
T Consensus 109 ~~g~~~vi~~~~~~Hg~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~--------~~~~~ii 172 (377)
T PRK02936 109 HTGKSKIVTFEQSFHGRTFG--T-MSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMN--------EEVAAVM 172 (377)
T ss_pred hcCCCeEEEECCCcCCCcHH--h-hhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhcc--------CCeEEEE
Confidence 344 457766554 444433 1 222221 11222222 7899999887 6789999
Q ss_pred EeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCCCce-eeEE
Q 018243 142 LENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLGAPV-GSVI 217 (359)
Q Consensus 142 i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~~-gg~~ 217 (359)
++++.+ ++|.. .+.+++++|+++|++||+++|+||+|.. +...+.... ......|+ .+++|.++... .|++
T Consensus 173 ~e~i~~-~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g--~g~~g~~~~~~~~~~~~di--~t~sK~l~~G~~ig~v 247 (377)
T PRK02936 173 LEVVQG-EGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTG--IGRTGTLFAYEQFGLDPDI--VTVAKGLGNGIPVGAM 247 (377)
T ss_pred EecccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCchhhHHHhhCCCCcE--EEEcccccCCCccEEE
Confidence 988866 77776 5679999999999999999999999742 233332211 12223454 46889997431 3778
Q ss_pred ecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC-CCceEec-CCccceEEEE
Q 018243 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL-KGLRVDV-DAVETNIVYF 294 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~-~g~~~~~-~~~~~~~~~~ 294 (359)
++++++.+.+... ....++..+++.++++..+++... ++.+++..++.+++++.|++. +++.... ....+.++|+
T Consensus 248 ~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 325 (377)
T PRK02936 248 IGKKELGTAFGPG--SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGI 325 (377)
T ss_pred EEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEE
Confidence 8898888876432 223334456677777777776542 235667777788888877762 2222111 1235678889
Q ss_pred EeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.. +...+.+.|.++||.+.+.+..++|++++..++++++++++++|++++
T Consensus 326 ~~~~----~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 326 ECTE----EVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred Eecc----hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 8875 367888899999999999888899999888899999999999998763
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=204.93 Aligned_cols=283 Identities=23% Similarity=0.224 Sum_probs=208.6
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|...++|+.+++++|.+.+++++||++|+..++.+++ ++||+|+++++.|.+.+... ......|++++.++.+
T Consensus 60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---- 134 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT---- 134 (390)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC----
Confidence 67789999999999999999999999999999998887 59999999999887765311 1244578888888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++ +||+|.+.+ +++|.++|+++|+++|+|+++..+.. .. ++.
T Consensus 135 -d~~~l~~~i~--------~~tklV~ie~p-~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~---~~---pl~ 195 (390)
T PRK08133 135 -DLDAWRAAVR--------PNTKLFFLETP-SNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPAL---QQ---PLK 195 (390)
T ss_pred -CHHHHHHhcC--------cCCeEEEEECC-CCCCCCcCC---HHHHHHHHHHcCCEEEEECCCccccc---CC---chh
Confidence 8899999998 78999999766 559999987 89999999999999999998643222 11 223
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.++|+++.|+||+++++ .||+++++++.++++.......+... ++..++.++.+++.... ++++..+++..+.+
T Consensus 196 ~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~--~~~~a~~~l~gl~tl~~-R~~~~~~~a~~la~ 272 (390)
T PRK08133 196 LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTL--SPFNAWVFLKGLETLSL-RMEAHSANALALAE 272 (390)
T ss_pred hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCC--CHHHHHHHHcccchHHH-HHHHHHHHHHHHHH
Confidence 36899999999999764 46888888888777765555555544 44555555666664444 77888899999999
Q ss_pred HHhcCCCceE-ecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----
Q 018243 273 GLNQLKGLRV-DVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE----- 321 (359)
Q Consensus 273 ~l~~~~g~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~----- 321 (359)
.|++.|+++. ..|. ..+.++.|.+.. .......|.+.|+--.+.+ .|.
T Consensus 273 ~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~ 351 (390)
T PRK08133 273 WLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG-GREAAWRVIDATRLISITANLGDTKTTITHPATTTHG 351 (390)
T ss_pred HHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC-CHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcc
Confidence 9999877652 2221 346678888864 2234667777764322222 111
Q ss_pred ------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 ------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+.+|+++. + |+.+.+++-|+++++
T Consensus 352 ~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~ 389 (390)
T PRK08133 352 RLSPEARAAAGITEGLIRVAVG--L--EDVADIKADLARGLA 389 (390)
T ss_pred cCCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHHhh
Confidence 2356999985 3 578888888887764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=206.96 Aligned_cols=283 Identities=21% Similarity=0.174 Sum_probs=208.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM 116 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 116 (359)
.|...++|+.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.|.+...........|+++..+. +
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------~ 124 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY------P 124 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC------C
Confidence 67889999999999999999999999999999999887 5999999999998876541111244566665543 3
Q ss_pred CHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 117 DIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|.+++++.++ + ++++|++++ ++||||.+++ +++|+++|+++|+++|+|++++.+... .++.
T Consensus 125 d~~~l~~~i~--------~~~tklV~ie~-p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~------~~l~ 186 (385)
T PRK08574 125 STEDIIEAIK--------EGRTKLVFIET-MTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLY------RPLR 186 (385)
T ss_pred CHHHHHHhcC--------ccCceEEEEEC-CCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC------Chhh
Confidence 7889999988 5 899999855 5559999988 789999999999999999997554321 1222
Q ss_pred cCccEEEEeccccCCCc---eee-EEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGS-VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|++|+++++ .|| +++.++++.++++.++...|... ++..++.+..+++.... ++++..+++..+.
T Consensus 187 ~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~--~p~~a~l~l~~l~tL~~-R~~~~~~na~~la 263 (385)
T PRK08574 187 HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM--QPFEAYLVLRGLKTLEV-RFERQCRNAMAIA 263 (385)
T ss_pred hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC--CHHHHHHHHcccCcHHH-HHHHHHHHHHHHH
Confidence 47899999999999865 356 56668888888887777666555 55666777777776555 8888889999999
Q ss_pred HHHhcCCCce-EecCC-----------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------------
Q 018243 272 EGLNQLKGLR-VDVDA-----------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------ 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------ 321 (359)
+.|++.|.+. +..|. ..+..+.|.++. ......+|.+.|+--.+.+.-|
T Consensus 264 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~-~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~~~~ 342 (385)
T PRK08574 264 EFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG-GRDAVLKFLRSLKLIKPSPSLGGVESLATYPVKS 342 (385)
T ss_pred HHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC-CHHHHHHHHHcCCcceEccCCCCCcceeeCCCcC
Confidence 9999887664 33321 245677788864 2235667777774322222111
Q ss_pred ---------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 ---------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 ---------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.+|+++. + |+.+.+++-|.+++++
T Consensus 343 ~~~~~~~~~~~~~gi~~~liR~svG--l--E~~~dli~dl~~al~~ 384 (385)
T PRK08574 343 AASPIPEEDRKALGITEDLVRLSVG--L--EDVEDLIEDLDQALGS 384 (385)
T ss_pred CcccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHhc
Confidence 1356999985 3 5788888888887754
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=206.15 Aligned_cols=332 Identities=16% Similarity=0.137 Sum_probs=223.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|.+.+++.+....... ....+...++.+.++++++.+.+++++||++|+..+++.+..
T Consensus 39 ~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~ 118 (406)
T PRK12381 39 KEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK 118 (406)
T ss_pred CEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHH
Confidence 357899884 4555569999888876533111 112456788999999998877889999999999999999753
Q ss_pred h-------cCCeEEecCCCcceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 T-------RGSEVILGDNSHIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
. ...+|+..+.+|..... + .....+.. +..++. .|++.+++.++ ++
T Consensus 119 ~~~~~~~~~r~~ii~~~~~yHG~t~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~--------~~ 183 (406)
T PRK12381 119 YAHDRYGSHKSGIVAFKNAFHGRTL-F-TVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALID--------DQ 183 (406)
T ss_pred HHhhcCCCCCCeEEEECCCcCCcch-h-HHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhcc--------CC
Confidence 2 23456655554433332 1 12222211 112222 28899999887 67
Q ss_pred eeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCCCce
Q 018243 137 TRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLGAPV 213 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~~ 213 (359)
+++|++++... .+|+. .+.+++++|+++|++||+++|+||+|. |. ...+.... .....+|+ .+++|.+++..
T Consensus 184 ~aaviiEPv~~-~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~-gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~ 258 (406)
T PRK12381 184 TCAVIVEPIQG-EGGVIPADKAFLQGLRELCDRHNALLIFDEVQT-GV-GRTGELYAYMHYGVTPDV--LTTAKALGGGF 258 (406)
T ss_pred eeEEEEeCCcC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-CC-CCCcchhhhHhhCCCCCE--EEehhhhhCCC
Confidence 89999975443 23433 368999999999999999999999973 22 33333211 12224554 58889996432
Q ss_pred e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-CCceE-ecCCccc
Q 018243 214 G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL-KGLRV-DVDAVET 289 (359)
Q Consensus 214 g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~-~g~~~-~~~~~~~ 289 (359)
. |++++++++.+.+... ..+.++..+++.++++..+++...+ +.+++..++.+++.+.|+++ ..+.+ ......+
T Consensus 259 ~ig~~~~~~~~~~~~~~~--~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 336 (406)
T PRK12381 259 PIGAMLTTEKCASVMTVG--THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLG 336 (406)
T ss_pred ceEEEEEcHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCe
Confidence 2 7788888888876432 2334444566666676666654322 35677788888898888875 11211 1113356
Q ss_pred eEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 290 NIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
.++++.+..+.......+.+.|.++||.+.+.+...+|++++..++++++++++++|+++++++..+
T Consensus 337 l~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 337 LLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred EEEEEEecCchhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777652112467888899999999987777899999988899999999999999999988654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=204.64 Aligned_cols=283 Identities=20% Similarity=0.178 Sum_probs=210.5
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|...++|+.+++++|.+.+++++||+.|+..++..++ ++||+|+++.+.|.+.+... ......|++++.++..
T Consensus 62 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---- 136 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR---- 136 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC----
Confidence 56789999999999999999999999999998888877 59999999999987754201 2245678888888644
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.+. ++++|++++ |+|...+..++++|.++|+++|+++|+|++++.+.. .. ++.
T Consensus 137 -d~~~l~~~i~---------~tklV~ie~----pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~---~~---p~~ 196 (389)
T PRK05968 137 -DEEAVAKALP---------GAKLLYLES----PTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVF---QR---PIT 196 (389)
T ss_pred -CHHHHHHhcc---------cCCEEEEEC----CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhc---cC---chh
Confidence 8888888764 478999975 445555667899999999999999999999744322 11 122
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|++|+++++ .||+++.+++++++++.... ..+..+ ++..++.+..+++.... ++++..+++..+.
T Consensus 197 ~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~--~~~~A~~~l~~L~tl~~-r~~~~~~~a~~la 273 (389)
T PRK05968 197 LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKL--SPFEAWLLLRGLRTLPL-RMKAHEASALEIA 273 (389)
T ss_pred cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCC--ChHHHHHHHcccCcHHH-HHHHHHHHHHHHH
Confidence 37899999999999875 35888899998888776543 344333 56777777778877655 8888899999999
Q ss_pred HHHhcCCCceEec-CC----------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-------------------
Q 018243 272 EGLNQLKGLRVDV-DA----------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------------- 321 (359)
Q Consensus 272 ~~l~~~~g~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------------- 321 (359)
+.|++.|+++... +. ..+.++.|.+.. +.+..+|.+.|...++.+.-|
T Consensus 274 ~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~ 351 (389)
T PRK05968 274 RRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE--GIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQP 351 (389)
T ss_pred HHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC--HHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCH
Confidence 9999998886433 31 235578888864 357789999997666544111
Q ss_pred --------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 --------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 --------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+|+++.. |+.+.+++-|++++++.
T Consensus 352 ~~~~~~gi~~~liR~SvGl----E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 352 NSAARFGVSPRSVRLHVGL----EGTEALWADLEQALAAA 387 (389)
T ss_pred HHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHHHh
Confidence 13569999963 45666677776666654
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=205.93 Aligned_cols=327 Identities=19% Similarity=0.195 Sum_probs=222.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ +....+|++.+++.+....... ....+...++++.++++.+.+.+++++||++|+..++..+..
T Consensus 40 ~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~ 119 (403)
T PRK05093 40 KEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARR 119 (403)
T ss_pred CEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHH
Confidence 357999885 5556569999888875532111 123455679999999988877889999999999999997743
Q ss_pred h-------cCCeEE-ecCCCcceeeccccccccC------------CccceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 76 T-------RGSEVI-LGDNSHIHIYENGGISTIG------------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 76 ~-------~g~~vl-~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
. ..++|+ +....|..+.. + .... ...++.++.+ |++.+++.+. +
T Consensus 120 ~~~~~~~~~~~~ii~~~~~~HG~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~--------~ 183 (403)
T PRK05093 120 YACDRHGPEKTEIIAFHNSFHGRTLF--T-VSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVID--------D 183 (403)
T ss_pred HHhhcCCCCCCeEEEEcCCcCCchhh--h-HhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhc--------C
Confidence 2 123454 55556665442 1 1111 1123334433 8899999887 6
Q ss_pred ceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCCCc
Q 018243 136 TTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~ 212 (359)
++++|++++ .++.+|.. .+.+++++|+++|++||+++|+||+|.. +.+.+.... .....+| +.|++|.+++.
T Consensus 184 ~~aaiiiep-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g--~g~~g~~~~~~~~~~~pd--i~s~sK~l~~G 258 (403)
T PRK05093 184 HTCAVVVEP-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTG--MGRTGDLFAYMHYGVTPD--ILTSAKALGGG 258 (403)
T ss_pred CeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCCCccchhhhhcCCCCC--EEEecccccCC
Confidence 789999974 33244443 4779999999999999999999999752 233333211 1112345 34778999743
Q ss_pred ee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCce--E-ecCCc
Q 018243 213 VG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLR--V-DVDAV 287 (359)
Q Consensus 213 ~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~--~-~~~~~ 287 (359)
.. |++++++++++.+... ..+.++..++..++++..+++... ++..+++.++.+++.+.|+++ +.. + ...+.
T Consensus 259 ~rig~vv~~~~i~~~l~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~ 335 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKVG--THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKI-NQKYGVFSEIRG 335 (403)
T ss_pred cceEEEEEcHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HhhCCCeEeEee
Confidence 22 7888898888876432 223344456666777776664432 235667788889999999876 221 1 12234
Q ss_pred cceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.++++.++.....+..++.+.|.++||.+.+.+..++|++++..++++++++++++|++++.++
T Consensus 336 ~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 336 MGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CceEEEEEecCcchhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 577788888642112567899999889999988777899999888889999999999999998764
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=206.94 Aligned_cols=274 Identities=13% Similarity=0.113 Sum_probs=187.2
Q ss_pred hHHHHHHHHHcCC-C--CCCccCCChHHHHHHHHHHHHh----CCC---CeEEcCCc-hHHHHHHHHHhhhhcCCeEEec
Q 018243 16 PTEAMRAAMASAE-V--DDDVLMHDPTAFRLETEMAKVM----GKE---AGLFVPSG-TMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 16 ~~~~~~~a~~~~~-~--~~~~~~~~~~~~~l~~~la~~~----~~~---~~~~~~~g-t~a~~~~l~~~~~~~g~~vl~~ 84 (359)
|.+.+.+++.... . ....|+...+..+|++++++++ |.+ ..+++++| ++++..++.+++.++||.|+++
T Consensus 82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~ 161 (407)
T PLN02368 82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVP 161 (407)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEe
Confidence 5566666665421 1 2335777778899999999988 432 23555555 5576677777663589999999
Q ss_pred CCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+|+|.... ..+...|.+++.++.+. ++.+|++.+++.+++.... ..+++++++.+| +||||.+++.+++++|
T Consensus 162 ~P~Y~~y~---~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~--~~~~k~l~l~nP-~NPTG~v~s~e~l~~l 235 (407)
T PLN02368 162 VPQYPLYS---ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSK--GITVRAMVIINP-GNPTGQCLSEANLREI 235 (407)
T ss_pred CCCCccHH---HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhc--CCCeEEEEEECC-CCCCCccCCHHHHHHH
Confidence 99977644 34777888999887653 4789999999998731000 026888888565 6699999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhh--cCchhHhhh----c----CccEEEE-eccccC-CCcee--eEEe---cCHHHHH
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLV----Q----AADSASV-CLSKGL-GAPVG--SVIV---GSKEFIK 225 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~----~----~~d~~~~-s~~K~~-g~~~g--g~~~---~~~~~~~ 225 (359)
+++|++||++||+||+|....+.. ...+...+. . ...++++ |+||.| +.++. ||++ .++++++
T Consensus 236 ~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~ 315 (407)
T PLN02368 236 LKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVE 315 (407)
T ss_pred HHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHH
Confidence 999999999999999964433221 112222221 0 1235555 999998 66554 8887 5888988
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHH----------HhH---HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVALQ----------ENV---LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~---~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
.+..... ...+ .+.+.+.++..+++ .+. +..++.++++++.+.+.|+++||+.+. .|.++.++
T Consensus 316 ~~~~~~~-~~~~--~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~ 391 (407)
T PLN02368 316 EIYKVAS-IALS--PNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYS 391 (407)
T ss_pred HHHHHhc-ccCC--CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEe
Confidence 8876532 2222 23344445554443 122 224667888999999999999998874 45678889
Q ss_pred EEEeccc
Q 018243 293 YFEITED 299 (359)
Q Consensus 293 ~~~~~~~ 299 (359)
|++++.+
T Consensus 392 ~~~i~lp 398 (407)
T PLN02368 392 FPQIKLP 398 (407)
T ss_pred ccCCCCC
Confidence 9777653
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=201.91 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=206.7
Q ss_pred cccccCCCCC-ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 5 TVDLRSDTVT-KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 5 ~id~~~~~~~-~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
.|||+++.+. ++++.+.+++.+.... ...|. .++..+++++++++++.+. .+++++|++..+..+..++ +|++
T Consensus 20 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~ 96 (337)
T PRK03967 20 RIWLDKNENPFDLPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKH 96 (337)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCe
Confidence 5889887665 4457888888765432 23454 4578999999999999764 4666666655544444444 7899
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|.. +. ..+...|.+++.++.+.++.+|++.+++.+. +++++++.+ ++||||.+++.+++
T Consensus 97 V~v~~P~y~~-~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~---------~~~~v~~~~-P~NPtG~~~~~~~l- 162 (337)
T PRK03967 97 IVITPPTFGM-YS--FYAKLNGIPVIDVPLKEDFTIDGERIAEKAK---------NASAVFICS-PNNPTGNLQPEEEI- 162 (337)
T ss_pred EEEeCCChHH-HH--HHHHHcCCeEEEeecCCCCCcCHHHHHHhcc---------CCCEEEEeC-CCCCCCCCCCHHHH-
Confidence 9999999764 44 3467889999999877778899999887543 567888755 57799999996554
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEEE-eccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSASV-CLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~-s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
.+++ ++++++|+||+|.. +. +.+...+. ....++++ |+||.||.|+- ||+++++++++.+......+
T Consensus 163 --~~i~-~~~~~ii~De~y~~--~~--~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~~-- 233 (337)
T PRK03967 163 --LKVL-ETGKPVVLDEAYAE--FS--GKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPF-- 233 (337)
T ss_pred --HHHH-hcCCEEEEECchhh--hc--ccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCCC--
Confidence 4555 47999999999643 21 11222222 12345554 99999996543 99999999998887665432
Q ss_pred CcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
..+...+.++...++ +...+.++...++++.+.+.|.+. . .+..++++|+.++ +.+.|.++
T Consensus 234 --~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~--~~~~~~~~~~~~~---------~~~~l~~~ 296 (337)
T PRK03967 234 --SLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY----A--YPSDANFLLLKLD---------AYDYLLEN 296 (337)
T ss_pred --CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC----c--CCCCCcEEEEhHH---------HHHHHHHC
Confidence 223444444444443 222224445556677778888764 1 2457888887652 56888889
Q ss_pred CceeccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 315 gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
||.+.+. ..+++|+++. +.++.++++++|+++.+.+
T Consensus 297 gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 297 GIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKEGY 335 (337)
T ss_pred CEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHhc
Confidence 9998544 2468999983 6788889999998876654
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=202.71 Aligned_cols=285 Identities=16% Similarity=0.130 Sum_probs=210.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
+|....||+.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|.+..... ......|+++..++..
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~---- 123 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL---- 123 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC----
Confidence 57789999999999999999999999999999999887 59999999999986654211 1234567777666432
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+.+.+++.++ +++++|+++++.| |+|...+ +++|+++|+++|+++|+|++|+.+... .++.
T Consensus 124 -~~e~l~~~i~--------~~tklV~lesp~N-p~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~------~pl~ 184 (377)
T TIGR01324 124 -IGEDIATLIQ--------PNTKVLFLEAPSS-ITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF------KPLE 184 (377)
T ss_pred -CHHHHHHhcC--------CCceEEEEECCCC-CCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc------Cccc
Confidence 3378888888 7899999977665 8888654 999999999999999999998665432 1233
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.++|+++.|++|+++++ .||+++++++..+.++.....+|... ++..+.....+++.... ++++..+++..+.+
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l--~p~~a~~~~rgl~tl~~-R~~~~~~~a~~la~ 261 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMV--DADDAYTTLRGLRTLGV-RLKQHQESSLAIAK 261 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCC--CHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHH
Confidence 48999999999999865 35888888888777765555555555 55666666677765444 88889999999999
Q ss_pred HHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---------------
Q 018243 273 GLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--------------- 321 (359)
Q Consensus 273 ~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------------- 321 (359)
.|++.|.+. +..|. ..+.++.|.+.........+|.+.|+-.++.+.-|
T Consensus 262 ~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~ 341 (377)
T TIGR01324 262 WLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGH 341 (377)
T ss_pred HHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCH
Confidence 999987663 33321 34667778886412345678888886655543111
Q ss_pred --------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 --------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 --------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++.+|+++. + |+.+++++.|.+++++
T Consensus 342 ~~~~~~~~~~~liR~svG--l--E~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 342 RPNIKRNLEGPLIRVHIG--L--ENVDDLKADLKAGFEA 376 (377)
T ss_pred HHHHhccCCCCEEEEEeC--C--CCHHHHHHHHHHHHhc
Confidence 1235899985 3 5778888888877764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=186.99 Aligned_cols=326 Identities=16% Similarity=0.171 Sum_probs=246.5
Q ss_pred ccccccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHH
Q 018243 2 VTRTVDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 2 ~~~~id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~ 71 (359)
+..+++|..+++.+-+ |++.++-.++... ....+....+..||..|+++.+.+++++++++-.|+..++.
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~fe 145 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFE 145 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHH
Confidence 4567899888887554 8887777664432 11345567789999999999999999999999999999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++. .|.+.|+-++..|.+... + .++.. ..+.+|+-+++..+....+ .+.++|..+...+ ..|
T Consensus 146 ail-~pedAvfSDeLNhASIId-G--irLck---------ry~h~dv~~l~~~l~~a~k----~r~klv~TDg~FS-MDG 207 (417)
T KOG1359|consen 146 AIL-TPEDAVFSDELNHASIID-G--IRLCK---------RYRHVDVFDLEHCLISACK----MRLKLVVTDGVFS-MDG 207 (417)
T ss_pred Hhc-Chhhhhhccccccchhhh-h--hHHHh---------hhccchhHHHHHHHHHhhh----heEEEEEecceec-cCC
Confidence 988 599999999999988876 3 33222 1223466666655553211 5778888888888 678
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh---cCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV---QAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
-+.| +++|.+++++||.++++||+|+.|.++..|....+.. .++|++..+++|.+|+..||+..+++.+++-++
T Consensus 208 diaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llr 284 (417)
T KOG1359|consen 208 DIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLR 284 (417)
T ss_pred Cccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHH
Confidence 8888 8999999999999999999999988887777666553 467888889999999888999999999999887
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
+....+-...+.++.....+..++.-.. .....+.+.+.+++++..+.. |+.+.. ...++..+-+.+ ...+.+
T Consensus 285 qr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-GftIsg--~~hPI~pv~lGd--a~lA~~ 359 (417)
T KOG1359|consen 285 QRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA-GFTISG--ASHPICPVMLGD--ARLASK 359 (417)
T ss_pred hcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CceecC--CCCCccceeccc--HHHHHH
Confidence 6555444334444444444444443222 125556777888899888877 999853 245555566654 257788
Q ss_pred HHHHHHhcCcee-------ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l~~~gi~~-------~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++|.+.||++ +|.+...+|+.++..++++|+|++++++.++.+..
T Consensus 360 ~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 360 MADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred HHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 999999999998 66788889999999999999999999999887654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=197.54 Aligned_cols=306 Identities=22% Similarity=0.280 Sum_probs=217.3
Q ss_pred CCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 12 TVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 12 ~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
++.++. +.. ...........|+. .|....+|+.++++.|.+.+++++||..|+..++.+++ ++||+|+++...|
T Consensus 28 tf~~~~~~~~--~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y 104 (386)
T PF01053_consen 28 TFVFDSAEEL--DAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALL-KPGDHIVASDDLY 104 (386)
T ss_dssp BBBBSSHHHH--HHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSS
T ss_pred cCcccchHHH--HhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhc-ccCCceEecCCcc
Confidence 444444 444 33333334455654 68889999999999999999999999999999999998 5999999999998
Q ss_pred ceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH
Q 018243 89 IHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK 167 (359)
Q Consensus 89 ~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~ 167 (359)
.+++... ......|+++..++.. |++++++.++ +++++|+++++.| |+..+.+ +++|+++|+
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~-----d~~~l~~~l~--------~~t~~v~~EspsN-P~l~v~D---l~~i~~~a~ 167 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPT-----DLEALEAALR--------PNTKLVFLESPSN-PTLEVPD---LEAIAKLAK 167 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTT-----SHHHHHHHHC--------TTEEEEEEESSBT-TTTB------HHHHHHHHH
T ss_pred CcchhhhhhhhcccCcEEEEeCch-----hHHHHHhhcc--------ccceEEEEEcCCC-ccccccc---HHHHHHHHH
Confidence 8876411 1244478888888655 9999999999 8999999988777 9888776 999999999
Q ss_pred HcC-cEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecC--HHHHHHHHHHHHhhCCCcchh
Q 018243 168 KHG-LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGS--KEFIKKARRLRKTLGGGMRQV 241 (359)
Q Consensus 168 ~~~-~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~--~~~~~~~~~~~~~~~~~~~~~ 241 (359)
++| +++++|++ ++. +....++..++|+++.|.+|++++- .||+++.+ +++.+.++......|... +
T Consensus 168 ~~g~~~~vVDnT--~at----p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~--~ 239 (386)
T PF01053_consen 168 EHGDILVVVDNT--FAT----PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATL--S 239 (386)
T ss_dssp HTTT-EEEEECT--TTH----TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B----
T ss_pred HhCCceEEeecc--ccc----eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccc--h
Confidence 998 99999998 322 2334455558999999999999764 35766654 578888888888888776 5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHH
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~ 305 (359)
+..+.....+++...- ++++..+++..+.+.|++.|.++ +..|. ..+..+.|.+... .....
T Consensus 240 p~da~ll~rgl~Tl~~-R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~-~~~~~ 317 (386)
T PF01053_consen 240 PFDAWLLLRGLRTLPL-RMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG-EEAAR 317 (386)
T ss_dssp HHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH-HHHHH
T ss_pred HHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc-hhhhH
Confidence 6677777778877665 88999999999999999998775 44431 3456888999873 23566
Q ss_pred HHHHHHHhcCcee----------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLV----------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 306 ~~~~~l~~~gi~~----------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.|.+.|+-.++.+ .|. .++.+|+++. + |+.+++++.|+++++
T Consensus 318 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG--l--Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 318 RFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG--L--EDPDDLIADLEQALE 386 (386)
T ss_dssp HHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE----S--S-HHHHHHHHHHHHH
T ss_pred hHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec--c--CCHHHHHHHHHHhcC
Confidence 7777774322211 111 2356999984 3 678888888888775
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=201.75 Aligned_cols=287 Identities=20% Similarity=0.186 Sum_probs=210.7
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.|.+.+... ..+...|++++.++..
T Consensus 63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~--- 138 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL--- 138 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC---
Confidence 367789999999999999988999999999999999987 69999999999988765311 1256678888888643
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
+.+++++.++ +++++|+++++.| |+|. ..++++|.++|+++|+++|+|++|..+.. ..++
T Consensus 139 --~~~~l~~~i~--------~~tklV~le~p~N-p~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~------~~~l 198 (394)
T PRK07050 139 --IGAGIADLIQ--------PNTRLIWLEAPGS-VTME---VPDVPAITAAARARGVVTAIDNTYSAGLA------FKPF 198 (394)
T ss_pred --CHHHHHHhcC--------CCCeEEEEECCCC-CCcc---HhhHHHHHHHHHHcCCEEEEECCcccccc------cCHH
Confidence 5578888887 7899999977655 8875 45699999999999999999999755432 2233
Q ss_pred hcCccEEEEeccccCCCce---ee-EEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GS-VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|+++.|++|++++.. || ++..++++.++++..+...|.+. ++..+..+...++.... ++++..+++..+
T Consensus 199 ~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~--~~~~a~l~lr~l~tl~~-Rl~~~~~~a~~l 275 (394)
T PRK07050 199 EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGV--SADDCSLVLRGLPSLQV-RLAAHDRSALEV 275 (394)
T ss_pred HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCC--CHHHHHHHHcCCCcHHH-HHHHHHHHHHHH
Confidence 3478999999999996532 45 55568889898888887777766 44444555555666555 888888999999
Q ss_pred HHHHhcCCCceE-ecC---------------CccceEEEEEeccc-hHHHHHHHHHHHHhcCceeccC------------
Q 018243 271 AEGLNQLKGLRV-DVD---------------AVETNIVYFEITED-SKLYAACLLKKLEEHGVLVMPE------------ 321 (359)
Q Consensus 271 ~~~l~~~~g~~~-~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~------------ 321 (359)
.+.|++.|.+.. ..+ ...+..+.|.+... .....++|.+.|+..++.+.-|
T Consensus 276 a~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~ 355 (394)
T PRK07050 276 AEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPYDVA 355 (394)
T ss_pred HHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeCccc
Confidence 999998876642 211 12344566777542 1346788888887766654211
Q ss_pred ---------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 ---------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 ---------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.||+++. + |+.+.+++.|.+++++.
T Consensus 356 ~~~~~~~~~~~~~iR~svG--l--E~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 356 SMRTAKWPHRGTLVRLYIG--L--EDEADLIADLEQALEAA 392 (394)
T ss_pred ccchhhcCCCCCEEEEEeC--c--CCHHHHHHHHHHHHHHh
Confidence 1246899985 3 56777777777777654
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=201.67 Aligned_cols=281 Identities=20% Similarity=0.240 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.|.+.+... ......|+++..++.+
T Consensus 53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~---- 127 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT---- 127 (380)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC----
Confidence 57789999999999999989999999999999998887 59999999998876654200 1245578888888654
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++. ||+|...+ +++|.++|+++|+++|+|++++.+.. .. ++.
T Consensus 128 -d~~~l~~~i~--------~~tklV~le~p~-np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~---~~---pl~ 188 (380)
T TIGR01325 128 -DLNAWEAAVK--------PNTKLVFVETPS-NPLGELVD---IAALAELAHAIGALLVVDNVFATPVL---QQ---PLK 188 (380)
T ss_pred -CHHHHHHhcC--------CCceEEEEECCC-CCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc---CC---chh
Confidence 7899998887 688999997665 49999887 89999999999999999999753321 11 122
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.++|+++.|++|+++++ .||++++++++.+.++......+.+. ++..++.+..+++.... ++++..+++..+.+
T Consensus 189 ~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~--~p~~a~~~l~~l~tl~~-r~~~~~~~a~~la~ 265 (380)
T TIGR01325 189 LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAM--SPFNAWVLLKGLETLSL-RMQKQFDSALAIAE 265 (380)
T ss_pred hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCC--CHHHHHHHHhccCcHHH-HHHHHHHHHHHHHH
Confidence 37899999999999764 45888899888888876666666554 44555566666666555 78888899999999
Q ss_pred HHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----
Q 018243 273 GLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE----- 321 (359)
Q Consensus 273 ~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~----- 321 (359)
.|++.|+++ +..| ...+.++.|.+.. ......|.+.|+--.+.+ .|.
T Consensus 266 ~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~--~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~ 343 (380)
T TIGR01325 266 WLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVAD--RAAAWKVLDAVELVSITNNLGDAKSTITHPATTTHG 343 (380)
T ss_pred HHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--HHHHHHHHHcCCcceEcccCCCCCeeeeCCCccCcc
Confidence 999987764 2222 1346678888863 235667777774332221 111
Q ss_pred ------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 ------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++.+|+++. + |+.+.+++.|++++
T Consensus 344 ~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al 380 (380)
T TIGR01325 344 RMQPEERAAAGIGDGLVRLSVG--L--EDVDDLIADLKRAL 380 (380)
T ss_pred cCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHhhC
Confidence 2356999985 3 57777777777653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-26 Score=198.61 Aligned_cols=291 Identities=15% Similarity=0.121 Sum_probs=216.8
Q ss_pred CccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceee
Q 018243 32 DVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTV 108 (359)
Q Consensus 32 ~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v 108 (359)
..|+. .|....||+.++++-|.+.+++++||+.|+..++.+++ ++||+|++++..|.+.+... ...+..|+++..+
T Consensus 54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 34553 78899999999999999999999999999999999887 59999999998887776411 1135578888888
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC--cEEEEecccccchhhh
Q 018243 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG--LKLHIDGARIFNAAVA 186 (359)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~--~~li~D~a~~~~~~~~ 186 (359)
+.. |.+.+++.++ +++++|+++++.| |+|.+.| +++|+++|+++| +++++|++++.+.
T Consensus 133 d~~-----d~~~l~~~l~--------~~TrlV~~EtpsN-p~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~--- 192 (395)
T PRK08114 133 DPL-----IGADIAKLIQ--------PNTKVVFLESPGS-ITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGV--- 192 (395)
T ss_pred CCC-----CHHHHHHhcC--------CCceEEEEECCCC-CCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccc---
Confidence 643 7899999998 7899999988776 9999887 899999999984 9999999964321
Q ss_pred cCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhH
Q 018243 187 LGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGD 263 (359)
Q Consensus 187 ~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (359)
.+.++..++|+++.|.+|+++++ .+|+++.+++..+.++......|... ++..++....+++...- ++++.
T Consensus 193 ---~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~--~p~~a~l~~rgl~TL~l-R~~~~ 266 (395)
T PRK08114 193 ---LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMV--DADTAYMTSRGLRTLGV-RLRQH 266 (395)
T ss_pred ---ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCC--CHHHHHHHHcCCCcHHH-HHHHH
Confidence 13333348999999999999887 44888888877777766666666655 66667777777776554 88999
Q ss_pred HHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccc-hHHHHHHHHHHHHhcCcee--------
Q 018243 264 HKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITED-SKLYAACLLKKLEEHGVLV-------- 318 (359)
Q Consensus 264 ~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~-------- 318 (359)
.+++..+.+.|++.|.++ +..|. ..+.++.|.+... .......|.+.|+--.+.+
T Consensus 267 ~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SL 346 (395)
T PRK08114 267 EESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESL 346 (395)
T ss_pred HHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccce
Confidence 999999999999987664 33331 3466788888641 1234556666664322111
Q ss_pred -c---c-------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 319 -M---P-------------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 319 -~---~-------------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
. | -..+.+|+++. + |+++.+++-|.++++++
T Consensus 347 i~~~~~~~~~~~~~~~~~~~~~~liRlSvG--l--Ed~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 347 ILANQPEEIAAIRPAGEVDFTGTLIRLHIG--L--EDVDDLIADLAAGFARI 394 (395)
T ss_pred eccCCchhhhccCChhHhcCCCCeEEEEec--c--CCHHHHHHHHHHHHHhh
Confidence 1 0 01256999985 3 57888888888887653
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=203.02 Aligned_cols=284 Identities=20% Similarity=0.179 Sum_probs=205.8
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..+...++|+.+++++|.+.++.++||++|+..++.+++ ++||+|+++.+.|.+.+... ......|+++..++..
T Consensus 59 ~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~--- 134 (388)
T PRK07811 59 GNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLS--- 134 (388)
T ss_pred CCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCC---
Confidence 357789999999999999999999999999999999887 59999999999987655311 1133357776666543
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++. ||||.+.+ +++|.++|+++|+++|+|++++.+.. .. ++
T Consensus 135 --d~e~l~~~i~--------~~tklV~ie~p~-NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~---~~---p~ 194 (388)
T PRK07811 135 --DLDAVRAAIT--------PRTKLIWVETPT-NPLLSITD---IAALAELAHDAGAKVVVDNTFASPYL---QQ---PL 194 (388)
T ss_pred --CHHHHHHhcC--------cCCeEEEEECCC-CCcceecC---HHHHHHHHHHcCCEEEEECCCCcccc---CC---ch
Confidence 8999999998 789999997655 49998765 89999999999999999999754322 11 22
Q ss_pred hcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|+++.|++|+++++. ||+++. ++++.+.++..+...+... ++..++.+..+++.... ++++..+++..+
T Consensus 195 ~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~--s~~~a~l~~~~L~tl~~-R~~~~~~na~~l 271 (388)
T PRK07811 195 ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVP--GPFDAYLTLRGLKTLAV-RMDRHSENAEAV 271 (388)
T ss_pred hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCC--CHHHHHHHHhccCcHHH-HHHHHHHHHHHH
Confidence 2378999999999998763 576665 6777777766655555544 44555566666666444 778888999999
Q ss_pred HHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC---
Q 018243 271 AEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE--- 321 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~--- 321 (359)
.+.|++.|++. +..|. ..+.++.|.++. ......+|.+.|+--.+.. .|.
T Consensus 272 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~ 350 (388)
T PRK07811 272 AEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG-GEEAARDFCARTKVFTLAESLGGVESLIEHPSAMT 350 (388)
T ss_pred HHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC-CHHHHHHHHHhCCcceeeccCCCCcceEeCCcccC
Confidence 99999988775 33331 246678888864 2235667777774322221 110
Q ss_pred -----------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 -----------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 -----------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++.+|+++. + |+.+.+++.|.++++
T Consensus 351 ~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~ 387 (388)
T PRK07811 351 HASTAGSQLEVPDDLVRLSVG--I--EDVADLLADLEQALG 387 (388)
T ss_pred cccCCHhhcCCCCCEEEEEeC--C--CCHHHHHHHHHHHhh
Confidence 1356999995 3 477778888877764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=201.79 Aligned_cols=310 Identities=17% Similarity=0.204 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcc
Q 018243 12 TVTKPTEAMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89 (359)
Q Consensus 12 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~ 89 (359)
++.++..+..+++.+.......|+ .+|....||+.++++.|..+++.++||+.|+..++.+++ ++||+|+++.+.|.
T Consensus 33 t~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~ 111 (432)
T PRK06702 33 TYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYG 111 (432)
T ss_pred ceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchH
Confidence 344445444444444322334454 368899999999999999999999999999999999887 69999999999988
Q ss_pred eeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 90 HIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 90 ~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
+++... ......|+++..++. .+|+++++++++ ++|++|++++ ++||++.+.+ +++|+++|++
T Consensus 112 ~T~~~~~~~l~~~Gi~v~~vd~----~~d~~~l~~~I~--------~~Tk~I~~e~-pgnP~~~v~D---i~~I~~iA~~ 175 (432)
T PRK06702 112 GTFNLFGVSLRKLGIDVTFFNP----NLTADEIVALAN--------DKTKLVYAES-LGNPAMNVLN---FKEFSDAAKE 175 (432)
T ss_pred HHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHhCC--------cCCeEEEEEc-CCCccccccC---HHHHHHHHHH
Confidence 666410 114567888888853 358899999999 7899999976 5669999887 8999999999
Q ss_pred cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCH----------HHH-----------
Q 018243 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSK----------EFI----------- 224 (359)
Q Consensus 169 ~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~----------~~~----------- 224 (359)
+|+++|+|+++ . .+....++..++|+++.|+||++++.. ||+++... ++.
T Consensus 176 ~gi~livD~T~--~----tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~ 249 (432)
T PRK06702 176 LEVPFIVDNTL--A----TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSY 249 (432)
T ss_pred cCCEEEEECCC--C----chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccch
Confidence 99999999984 2 122233455589999999999997643 36555211 111
Q ss_pred ----------HHHH-HHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC------
Q 018243 225 ----------KKAR-RLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA------ 286 (359)
Q Consensus 225 ----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~------ 286 (359)
.+.+ .....+| ..+++..++.+..+++.... ++++..+++..+.+.|++.|.+. +..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g--~~~sp~~a~l~~rgL~Tl~l-R~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~ 326 (432)
T PRK06702 250 VQNFGAAAYIVKARVQLLRDYG--NCMSPFNAYISNIGLETLHL-RMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326 (432)
T ss_pred hhccchhhHHHHHHHHHHHHcc--CCCCHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCcc
Confidence 1111 1222334 35577888888888877555 88888999999999999987765 32221
Q ss_pred ----------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----------------CCcEEEEE
Q 018243 287 ----------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE-----------------SSTRVRIV 329 (359)
Q Consensus 287 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~-----------------~~~~lRi~ 329 (359)
..+.++.|.++. ....+.+|.+.|+-..+.+ .|. ..+.+|++
T Consensus 327 ~~l~~~~~~~g~gg~~sf~l~~-~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlS 405 (432)
T PRK06702 327 YSLAQKYLKKGASGVLTFGIKG-GLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLS 405 (432)
T ss_pred HHHHHHhCcCCCceEEEEEecC-CHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEE
Confidence 235677888864 2235667777774332222 111 23569999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHH
Q 018243 330 VHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 330 ~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+. + |+.+.+++-|.++++.
T Consensus 406 vG--l--Ed~eDLi~Dl~~Al~~ 424 (432)
T PRK06702 406 VG--I--EDVSDIIADLEAALVG 424 (432)
T ss_pred ec--c--CCHHHHHHHHHHHHhc
Confidence 85 3 6788888888888764
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=200.88 Aligned_cols=285 Identities=18% Similarity=0.192 Sum_probs=201.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+.++++++|++|+..++.+++ ++||+|+++.+.|.+.+... ..++..|+++..++.+
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~---- 118 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG---- 118 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC----
Confidence 67889999999999999989999999999888888887 59999999987664433200 2256678887777643
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+.+.+++.++ +++++|++++++| |||.+++ +++|.++|+++|+++|+|++|..+. ...++.
T Consensus 119 -~~~~l~~~~~--------~~tklV~l~sp~N-PtG~v~d---~~~I~~la~~~g~~vivDea~~~~~------~~~~l~ 179 (376)
T PRK06460 119 -SDNIIEKAKS--------KRYDVVFVENITN-PLLRVVD---ITELSKVCKENGSILIVDATFSTPI------NQKPLE 179 (376)
T ss_pred -CHHHHHHhcC--------CCceEEEEECCCC-CCCcccC---HHHHHHHHHHcCCEEEEECCcCccc------cCChhh
Confidence 3344554444 6889999966555 9999998 6788999999999999999964321 112223
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.+.|+++.|+||++++. .+|++++++++++.++.....++.+. ++..+..++.+++. ++.++++..++++++.+
T Consensus 180 ~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~--~~~~a~~~l~~~~~-l~~r~~~~~~n~~~l~~ 256 (376)
T PRK06460 180 LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSL--DPHAAYLTLRGIKT-LKIRMDVINRNAEQIAE 256 (376)
T ss_pred cCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCC--CHHHHHHHHhchhh-HHHHHHHHHHHHHHHHH
Confidence 36788889999999764 36899999999999887777776654 33444444444433 34478889999999999
Q ss_pred HHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----
Q 018243 273 GLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE----- 321 (359)
Q Consensus 273 ~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~----- 321 (359)
.|++.|.+. +..| ...+..+.|.+.. .......|.+.|+--.+.+ .|.
T Consensus 257 ~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~-~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~ 335 (376)
T PRK06460 257 FLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG-GQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHR 335 (376)
T ss_pred HHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-cHHHHHHHHHhCCcceeccCCCCCceEEeCccccccc
Confidence 999887663 3332 1346678888864 2235666777663211111 111
Q ss_pred ------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 ------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 ------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+|+++. + |+.+.+++.|++++..+
T Consensus 336 ~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 336 TLSLEERKIVGITDSLLRLSVG--I--EDVNDLIEDLDRALSTL 375 (376)
T ss_pred cCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhh
Confidence 2356999995 3 57888888888887653
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=203.37 Aligned_cols=286 Identities=22% Similarity=0.234 Sum_probs=206.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||+.|+..++..++ ++||+|+++.+.|...+... ..+...|++++.++..
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~---- 137 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS---- 137 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC----
Confidence 67789999999999999999999999999999999887 59999999999887654310 2245678898888754
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++ +||||.+.+ +++|.++|+++|+++|+|++++. + ....++.
T Consensus 138 -d~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~---~---~~~~pl~ 198 (431)
T PRK08248 138 -DPENFEAAIT--------DKTKALFAETI-GNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS---P---YLLRPIE 198 (431)
T ss_pred -CHHHHHHhcC--------CCCeEEEEECC-CCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc---c---ccCChhH
Confidence 8999999998 68999999654 559999988 78999999999999999998632 1 1122233
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHH---------------------------------HHHHHHHHHhhCCCcc
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEF---------------------------------IKKARRLRKTLGGGMR 239 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 239 (359)
.++|+++.|++|++|++ .||+++.+.+. ...........|..
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-- 276 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAA-- 276 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCC--
Confidence 48999999999999875 34666643211 01111223334433
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC----------------CccceEEEEEeccchHH
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKL 302 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~ 302 (359)
.++..++....+++.... ++++..+++..+.+.|++.|+++ +..| ...+..+.|.+.. ...
T Consensus 277 l~p~~a~l~~rgl~tl~~-R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~-~~~ 354 (431)
T PRK08248 277 LSPFNSFLLLQGLETLHL-RMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKG-GVE 354 (431)
T ss_pred CCHHHHHHHhcCcCcHHH-HHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHH
Confidence 466777777777777655 88899999999999999988764 3332 1236678888864 223
Q ss_pred HHHHHHHHHHhcCceeccC---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPE---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
....|.+.|+--.+.+.-| .++.+|+++. + |+.+++++-|.+++++.+
T Consensus 355 ~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--l--Ed~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 355 AGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVG--T--EAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred HHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhhh
Confidence 5667777774322222111 2446999985 3 578888888888887653
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=198.16 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=185.5
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCch-HHHHHHHHHhhhhcCCeEE
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT-MGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt-~a~~~~l~~~~~~~g~~vl 82 (359)
.+|||+.+.+..|++.+.+++.++......| +....+++.++++++. .+++++|+ +++..++ .++. +|+.|+
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~~~~~y---p~~~~l~~~ia~~~~~--~I~vt~G~~~al~~~~-~~~~-~gd~vl 81 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKEISGRY---TYYEWLEEEFSKLFGE--PIVITAGITEALYLIG-ILAL-RDRKVI 81 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHHHhhcC---CChHHHHHHHHHHHCC--CEEECCCHHHHHHHHH-HhhC-CCCeEE
Confidence 4689998855555578888887653332234 3357899999999985 35555555 5554444 5554 899999
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
++.|+|..... .++..|.+++.++ +|++.+++.++ +++++++.+| |||||.+++.+++++|
T Consensus 82 v~~P~y~~~~~---~~~~~g~~~~~~~------~d~~~l~~~~~---------~~~~vi~~~P-~NPTG~~~~~~~l~~l 142 (311)
T PRK08354 82 IPRHTYGEYER---VARFFAARIIKGP------NDPEKLEELVE---------RNSVVFFCNP-NNPDGKFYNFKELKPL 142 (311)
T ss_pred EeCCCcHHHHH---HHHHcCCEEeecC------CCHHHHHHhhc---------CCCEEEEecC-CCCCCCccCHHHHHHH
Confidence 99999777543 4778888887653 48888888766 2456666555 6799999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEE-EeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcc
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMR 239 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
.++|+++|+++|+||+|..... .+.. .. ...+++ .|+||.|+.|+. ||+++ ..+.++.....+..
T Consensus 143 ~~~a~~~~~~li~De~y~~f~~--~~~~---~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~~~~--- 210 (311)
T PRK08354 143 LDAVEDRNALLILDEAFIDFVK--KPES---PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWSI--- 210 (311)
T ss_pred HHHhhhcCcEEEEeCcchhccc--cccc---cC-CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCCccC---
Confidence 9999999999999999643322 1211 11 223444 499999996543 88877 44555444332222
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM 319 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 319 (359)
+....+++...++...+ +..++.+.+++..+.+.+.-. . ++.++++++.+. +..++.+.|.++||.+.
T Consensus 211 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~~~~~~~-----~~~~~~~~l~~~gv~v~ 278 (311)
T PRK08354 211 -GSTGYAFLEFLIEDDFE----HLRKTMPLIWREKERFEKALY-V-KSDANFFIKDVG-----DAEKFVEFLKRNGILVR 278 (311)
T ss_pred -CHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHhcC-C-CCCCcEEEEECC-----CHHHHHHHHHHCCeEEE
Confidence 22222222222222111 111222222222222111111 1 335677776553 35678899999999998
Q ss_pred cCC----CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 320 PES----STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 320 ~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++. ++++||++ ...++.++++++|+++
T Consensus 279 ~g~~f~~~~~iRi~~---~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 279 DCTSFGLPGYIRFSV---RDREENEKLIRALREW 309 (311)
T ss_pred ecccCCCCCeEEEEe---CCHHHHHHHHHHHHHh
Confidence 764 36899999 3566788888888764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=200.51 Aligned_cols=287 Identities=15% Similarity=0.125 Sum_probs=209.6
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+++.++++.|.+.+++++||++|+..++..++ ++||+|+++++.|.+.+... ......+.++..++ .
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~ 124 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----Q 124 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----C
Confidence 56789999999999998888999999999998888877 59999999999987655311 11223444555553 2
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
.|++++++.++ +++++|++++ ++||||.+++ +++|.++|+++|+++|+|++|..+.. ..++.
T Consensus 125 ~d~e~l~~~l~--------~~tklV~l~s-P~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~------~~pl~ 186 (386)
T PRK08045 125 GDEQALRAALA--------EKPKLVLVES-PSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL------QNPLA 186 (386)
T ss_pred CCHHHHHHhcc--------cCCeEEEEEC-CCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc------CCchh
Confidence 48999999988 7889999965 5559999988 78999999999999999999644321 12233
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|++|+++++. +|+++. ++++.+.++......+.+. ++..+..+..+++.... ++++..+++..+.
T Consensus 187 ~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~--~p~~~~l~~rgl~tl~~-R~~~~~~na~~la 263 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTG--GAFDSYLLLRGLRTLVP-RMELAQRNAQAIV 263 (386)
T ss_pred hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHhhhccHHH-HHHHHHHHHHHHH
Confidence 478999999999997654 466655 6888888877777776665 66777777888876444 8889999999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--------------
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-------------- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------- 321 (359)
+.|++.|.++ +..|. ..+..+.|.++. ......+|.+.|+--.+.+.-|
T Consensus 264 ~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~ 342 (386)
T PRK08045 264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-DEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH 342 (386)
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC-cHHHHHHHHHhccceeEeccCCCCceeEeCCCCccc
Confidence 9999987764 33321 345677888864 2234567777775433222111
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
..+.+|+++. + |+.+++++-|.++++++.+
T Consensus 343 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 343 AGMAPEARAAAGISETLLRISTG--I--EDGEDLIADLENGFRAANK 385 (386)
T ss_pred ccCCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHHHHHhhc
Confidence 2456999995 3 5788888888888876643
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-26 Score=200.59 Aligned_cols=285 Identities=17% Similarity=0.125 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecc-ccccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN-GGISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|...+.. .......|.+++.++..
T Consensus 59 ~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~---- 133 (405)
T PRK08776 59 NPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLT---- 133 (405)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCC----
Confidence 56678999999999999889999999999988888887 6999999999998764320 02244557677776543
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|++++++ ||||.+.+ +++|.++|+++|+++|+|++|..+.. ..++.
T Consensus 134 -d~~~l~~~i~--------~~tklV~l~~P~-NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~------~~pl~ 194 (405)
T PRK08776 134 -DPRSLADALA--------QSPKLVLIETPS-NPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL------QKPLE 194 (405)
T ss_pred -CHHHHHHhcC--------cCCeEEEEECCC-CCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc------CCccc
Confidence 8899999987 688999997655 59999865 89999999999999999999744221 11222
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|.+|+++++. ||+++. ++++.+++.......+.+. ++..+++...+++.... ++++..+++..+.
T Consensus 195 ~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~--s~~~a~l~~~gl~tl~~-r~~~~~~na~~la 271 (405)
T PRK08776 195 FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTG--SPFDAFLTLRGLRTLDA-RLRVHQENADAIA 271 (405)
T ss_pred ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHhhhCcHHH-HHHHHHHHHHHHH
Confidence 378999999999998653 465555 6888888776666656543 56666666666665444 8888999999999
Q ss_pred HHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC----
Q 018243 272 EGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---- 321 (359)
+.|++.|.+. +..| ...+.++.|.+.. ......+|.+.|+--.+... |.
T Consensus 272 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h 350 (405)
T PRK08776 272 ALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG-GEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTH 350 (405)
T ss_pred HHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC-CHHHHHHHHHhCCcceEccCCCCCceEEECCccccc
Confidence 9999987664 3222 1346678888864 22345677777743222211 10
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+|+|+. + |+.+.+++-|+++++++
T Consensus 351 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dli~dl~~al~~~ 391 (405)
T PRK08776 351 AAMTAEARAAAGISDGLLRLSVG--I--ESAEDLLIDLRAGLARA 391 (405)
T ss_pred ccCCHHHHHhcCCCCCeEEEEeC--c--CCHHHHHHHHHHHHHHh
Confidence 2346999995 3 45666666666666554
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=202.37 Aligned_cols=330 Identities=15% Similarity=0.131 Sum_probs=216.4
Q ss_pred cccccccCCCC----CChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTV----TKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~----~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++.. ...+|.+.+++.+....... ....+...++.+.++++++.+..++++||++|+..+++.+..
T Consensus 75 ~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~ 154 (474)
T PLN02624 75 KKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARK 154 (474)
T ss_pred CEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHH
Confidence 36789988622 34458888888875543221 123567788999999999888889999999999999997764
Q ss_pred h-------c-CC-eEEecCCCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 76 T-------R-GS-EVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 76 ~-------~-g~-~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
. + ++ .|+....+|.+... ++ ....+- .+..++.+ |++.+++.+++..
T Consensus 155 ~~~~~~g~~~~~~~ii~~~~~yHG~t~-~~-~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~----- 222 (474)
T PLN02624 155 WGYEKKGIPKNEAIIVSCCGCFHGRTL-AA-ISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDG----- 222 (474)
T ss_pred HHHhhcCCCCCCcEEEEECCCcCCCCH-HH-hhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCC-----
Confidence 1 1 22 35544444333221 11 111110 11223332 7889999887321
Q ss_pred CceeEEEEeccccCCCceecChh-hHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-h-hhcCccEEEEeccccCCC
Q 018243 135 PTTRLICLENTHANCGGRCLSVE-YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-R-LVQAADSASVCLSKGLGA 211 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~~K~~g~ 211 (359)
.++++|+++++.+ ++|.+++.+ ++++|.++|++||+++|+||+|.. ++..|.... . ....+|+++ ++|.+|+
T Consensus 223 ~~iaaiiiEpv~~-~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG--~GrtG~~~a~~~~~i~pDiv~--lsK~lgg 297 (474)
T PLN02624 223 DRIAAFLFEPIQG-EAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTG--LARTGKMLACDWEEVRPDVVI--LGKALGG 297 (474)
T ss_pred CCEEEEEECCccC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--cCcCcchhhHHhcCCCCCEEE--ecccccC
Confidence 4688999977665 899987764 699999999999999999999852 222332221 1 112456555 4698876
Q ss_pred ce-e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CC-ceEe
Q 018243 212 PV-G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KG-LRVD 283 (359)
Q Consensus 212 ~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g-~~~~ 283 (359)
+. . |+++.++++++.+... ..+.++..+++.++++..+++...+ +..++..++.+++++.|+++ |. +...
T Consensus 298 G~~pigav~~~~~i~~~~~~~--~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~v 375 (474)
T PLN02624 298 GVIPVSAVLADKDVMLCIKPG--EHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEV 375 (474)
T ss_pred CCCcceeeeecHHHHhHhccC--CcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 42 2 6677788877765432 2334444566777777777754432 23445556666777666653 22 2211
Q ss_pred cCCccceEEEEEeccch--HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITEDS--KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+.++.+.+..+. .....++.+.|.++||.+.+.+...+||+++..++++++++++++|++++++-
T Consensus 376 --rg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 376 --RGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred --EeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 234555555554311 23567889999999999999888899999988999999999999999988754
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=199.16 Aligned_cols=282 Identities=21% Similarity=0.239 Sum_probs=203.0
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||++|+..++ .++ ++||+|+++++.|.+.+... ......|++++.++..
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---- 124 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLF-RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA---- 124 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHh-CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC----
Confidence 5778999999999999999999999998887655 555 59999999999987753200 2245678888888653
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|++++|. ||+|. ..++++|.++|+++|+++|+|++|..... .. ++.
T Consensus 125 -d~~~l~~~i~--------~~tklv~le~P~-NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~---~~---p~~ 185 (366)
T PRK08247 125 -SLKAIEQAIT--------PNTKAIFIETPT-NPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVL---QR---PLE 185 (366)
T ss_pred -CHHHHHHhcc--------cCceEEEEECCC-CCCCc---HHHHHHHHHHHHHcCCEEEEECCCccccc---cC---chh
Confidence 8999999998 789999997765 59776 45699999999999999999999632211 11 223
Q ss_pred cCccEEEEeccccCCCc---eeeEEecC-HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGS-KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|+||+++++ .+|+++.+ +++.+.++..+...+... ++..++++..+++.... ++++..+++..+.
T Consensus 186 ~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~--s~~~a~l~~~~l~tl~~-r~~~~~~~a~~l~ 262 (366)
T PRK08247 186 EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVL--SPFDSWLLIRGMKTLAL-RMRQHEENAKAIA 262 (366)
T ss_pred cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCC--ChHHHHHHHhccCcHHH-HHHHHHHHHHHHH
Confidence 37899999999999865 45878875 778888776766665554 45556666667765554 7778899999999
Q ss_pred HHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh----------cCceeccC-----------------CCc
Q 018243 272 EGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE----------HGVLVMPE-----------------SST 324 (359)
Q Consensus 272 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~gi~~~~~-----------------~~~ 324 (359)
+.|++.|++.....|..+.++.+.+.. ......|.+.|.- +++.+.|+ +.+
T Consensus 263 ~~L~~~p~v~~v~~P~~gg~~sf~~~~--~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~ 340 (366)
T PRK08247 263 AFLNEQPGVTDVLYPGRGGMLSFRLQD--EEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNR 340 (366)
T ss_pred HHHHhCCCeeEEecCCcCcEEEEEECC--HHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCC
Confidence 999999998743334355555567653 1233455554421 22232332 134
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 325 RVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 325 ~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+|+++. + |+++.+++.|.+++++
T Consensus 341 ~~R~svG--l--E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 341 LLRFSVG--I--ENVEDLIADLKQAFKQ 364 (366)
T ss_pred eEEEEec--c--CCHHHHHHHHHHHHhh
Confidence 6999985 3 5788888888888765
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=199.47 Aligned_cols=285 Identities=21% Similarity=0.249 Sum_probs=204.2
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecccccc---ccCCccceeeecCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIS---TIGGVHPRTVKNNQD 113 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~ 113 (359)
.|....|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|...+. ... ...|+++..++..
T Consensus 57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~--~~~~~l~~~gi~v~~~d~~-- 131 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYN--LLAHTLPRIGIETRFAAHD-- 131 (425)
T ss_pred CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHH--HHHHhcccceeEEEEECCC--
Confidence 57789999999999999889999999999999999888 599999999998876554 122 2246566555533
Q ss_pred CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh
Q 018243 114 GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 114 ~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
|++++++.++ +++++|++++++ ||||.+++ +++|.++|+++|+++|+|++++.+.. ..+
T Consensus 132 ---d~e~le~ai~--------~~tklV~lesp~-NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~------~~p 190 (425)
T PRK06084 132 ---DIAALEALID--------ERTKAVFCESIG-NPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL------CRP 190 (425)
T ss_pred ---CHHHHHHHhc--------cCCcEEEEeCCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc------CCh
Confidence 8999999998 688999996555 59999988 89999999999999999999754322 122
Q ss_pred hhcCccEEEEeccccCCCc---eeeEEecCHHH--HH----------------------------HHHH--HHHhhCCCc
Q 018243 194 LVQAADSASVCLSKGLGAP---VGSVIVGSKEF--IK----------------------------KARR--LRKTLGGGM 238 (359)
Q Consensus 194 ~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~--~~----------------------------~~~~--~~~~~~~~~ 238 (359)
+..++|+++.|++|+++++ .||+++.++.. .+ .... .....+.+.
T Consensus 191 ~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~ 270 (425)
T PRK06084 191 FEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGA 270 (425)
T ss_pred hhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCC
Confidence 3347999999999999765 35666653221 00 0000 011123344
Q ss_pred chhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC---------------Cc-cceEEEEEeccchH
Q 018243 239 RQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD---------------AV-ETNIVYFEITEDSK 301 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~---------------~~-~~~~~~~~~~~~~~ 301 (359)
.+++..++..+.+++.... ++++..+++..+.+.|++.|.+. +..| +. .+..+.|.+... .
T Consensus 271 ~l~~~~a~l~lrgl~tl~~-R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~-~ 348 (425)
T PRK06084 271 ALSPFNAFLILQGLETLAL-RMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGG-Q 348 (425)
T ss_pred CCCHHHHHHHHcCcCcHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCC-H
Confidence 4577788888888887766 88999999999999999988764 3332 12 366788888642 2
Q ss_pred HHHHHHHHHHHhcCceec----------cC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLEEHGVLVM----------PE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 302 ~~~~~~~~~l~~~gi~~~----------~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
....+|.+.|+-..+.+. |. .++.+|+++. + |+.+.+++.|++++++.
T Consensus 349 ~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svG--l--Ed~~dLi~dl~~Al~~~ 423 (425)
T PRK06084 349 AAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIG--I--EHIDDIIADLAQALDAS 423 (425)
T ss_pred HHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhh
Confidence 345677777753332221 10 2356999985 3 67888888888888765
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=185.93 Aligned_cols=309 Identities=14% Similarity=0.103 Sum_probs=221.6
Q ss_pred cCCChHHHHHHHHHHHHhCC----------CCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCc
Q 018243 34 LMHDPTAFRLETEMAKVMGK----------EAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGV 103 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~~~~----------~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~ 103 (359)
|....+...+++++|+++.. ++.++++++|.|+......+. .||+..++|.|.|+.... ...-+.|+
T Consensus 117 fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdr--dl~~rTgv 193 (471)
T KOG0256|consen 117 FQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDR--DLRWRTGV 193 (471)
T ss_pred cccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccc--cceeccCc
Confidence 55567789999999998742 123677777778887777777 499999999999877655 33556899
Q ss_pred cceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccccc
Q 018243 104 HPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181 (359)
Q Consensus 104 ~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 181 (359)
++++|.. ..+++++++.|++++++....+ .+++.|++.||.| |.|.+++.+++..+.+++.++++-+|+||.|+.
T Consensus 194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~--~kVkGvlitNPsN-PLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 194 EIVPVHCSSSNGFQITVEALEAALNQARKLG--LKVKGVLITNPSN-PLGTTLSPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHHHhC--CceeEEEEeCCCC-CCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 9998844 3557899999999998643333 6788999967665 999999999999999999999999999999765
Q ss_pred chhhhc-CchhHhhhc----Ccc--EEEEeccccCCCcee--eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHH
Q 018243 182 NAAVAL-GVPVRRLVQ----AAD--SASVCLSKGLGAPVG--SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVA 251 (359)
Q Consensus 182 ~~~~~~-~~~~~~~~~----~~d--~~~~s~~K~~g~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
..+... ..+..++.. ..| -++.|+||-||.|+- |+++. ++.+....+++..+... .+ ..+...+.+..
T Consensus 271 sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~v-Ss-~tQ~~la~LLS 348 (471)
T KOG0256|consen 271 SVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLV-SS-QTQYLLASLLS 348 (471)
T ss_pred cccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCC-cH-HHHHHHHHHhc
Confidence 444322 234444432 233 355699999998765 87877 67777776666554332 21 22222222221
Q ss_pred ----HHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc----hHHHHHHHHHHH-HhcCceeccCC
Q 018243 252 ----LQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED----SKLYAACLLKKL-EEHGVLVMPES 322 (359)
Q Consensus 252 ----l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~~~gi~~~~~~ 322 (359)
.+.+..+...|+..+.+++.+.|+++ |+.... ...|-|+|+.+... ....-.++.+.+ .+-++.+.||.
T Consensus 349 D~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~-s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~ 426 (471)
T KOG0256|consen 349 DEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLK-SNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGS 426 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceee-cCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCC
Confidence 14455557778888889999999999 998854 46889999988642 111223455555 44499998884
Q ss_pred ------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 323 ------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 323 ------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++|+|+||. .+.++.++-+.++|+..+...
T Consensus 427 s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~~~ 462 (471)
T KOG0256|consen 427 SCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLDSQ 462 (471)
T ss_pred cceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence 578999997 677777777999999888744
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=198.01 Aligned_cols=285 Identities=15% Similarity=0.117 Sum_probs=207.0
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|....+++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.++|.+.+... .+....+.++..++.
T Consensus 49 ~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~---- 123 (382)
T TIGR02080 49 GNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ---- 123 (382)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC----
Confidence 357789999999999998888999999999999998887 59999999999987655411 112333445544432
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
.|++.+++.++ +++++|+++++ +||||.+++ +++|.++|+++|+++|+|++|..+... . ++
T Consensus 124 -~d~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---~---pl 184 (382)
T TIGR02080 124 -GDEQALRAALA--------QKPKLVLIETP-SNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ---N---PL 184 (382)
T ss_pred -CCHHHHHHhcC--------cCceEEEEECC-CCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC---C---ch
Confidence 28899999998 68999999655 559999988 789999999999999999997543221 1 22
Q ss_pred hcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|+++.|+||+++++. +|+++. ++++.+.++..+...|... ++..++.++.+++.... ++++..+++..+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~--sp~~a~l~lr~l~tl~~-R~~~~~~na~~~ 261 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTG--GAFDSYLTLRGLRTLVA-RMRLQQRNAQAI 261 (382)
T ss_pred hhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCC--CHHHHHHHHcccchHHH-HHHHHHHHHHHH
Confidence 2368999999999997643 476655 7888888887777767665 66677777777776665 788888999999
Q ss_pred HHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-------------
Q 018243 271 AEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------- 321 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------- 321 (359)
.++|++.|.++ +..|. ..+..+.|.++. ......+|.+.|+--++.+.-|
T Consensus 262 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~ 340 (382)
T TIGR02080 262 VEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG-GEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMT 340 (382)
T ss_pred HHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC-cHHHHHHHHHcCCcceEeccCCCCcceeECCCccC
Confidence 99999887664 33321 346678888864 2234567777774333222111
Q ss_pred --------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 --------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 --------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.+|+++. + |+.+++++.|++++++
T Consensus 341 ~~~~~~~~~~~~gi~~~liRlsvG--l--E~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 341 HAAMGPEARAEAGISDTLLRLSVG--L--EDADDLIADLEQGLRA 381 (382)
T ss_pred cccCCHHHHHhcCCCcCeEEEEec--c--CCHHHHHHHHHHHHhh
Confidence 2346999985 3 5788888888887763
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=197.95 Aligned_cols=288 Identities=22% Similarity=0.244 Sum_probs=206.8
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||+.|+..++.+++ ++||+|+++...|.+++... ......|++++.++ +.
T Consensus 68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~--- 142 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP--- 142 (436)
T ss_pred CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---
Confidence 57789999999999999999999999999999998887 59999999998877655310 11334677777774 11
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
.|++.+++.++ +++++|+++++.| |+|.+.| +++|.++|+++|+++|+|++++.+.. ..++.
T Consensus 143 ~d~e~l~~ai~--------~~tklV~ie~~sN-p~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~------~~pl~ 204 (436)
T PRK07812 143 DDLDAWRAAVR--------PNTKAFFAETISN-PQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL------IRPLE 204 (436)
T ss_pred CCHHHHHHhCC--------CCCeEEEEECCCC-CCCeecC---HHHHHHHHHHcCCEEEEECCCccccc------CCchh
Confidence 28999999888 7899999988777 9999988 89999999999999999998643221 22233
Q ss_pred cCccEEEEeccccCCCce---eeEEecCHH------------------------------HHHHHH-HHHHhhCCCcchh
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVGSKE------------------------------FIKKAR-RLRKTLGGGMRQV 241 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~~~~------------------------------~~~~~~-~~~~~~~~~~~~~ 241 (359)
.++|+++.|+||++|+.. ||+++.+.. ++.+.+ ......|... +
T Consensus 205 ~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l--~ 282 (436)
T PRK07812 205 HGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAI--S 282 (436)
T ss_pred cCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCC--C
Confidence 489999999999998653 355554321 111111 1223344444 6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC----------------CccceEEEEEeccchHHHH
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~ 304 (359)
+..++..+.+++.... ++++..+++..+.+.|++.|+++ +..| ...+..+.|.+.. .....
T Consensus 283 p~~a~l~~rgl~tL~~-R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~-~~~~~ 360 (436)
T PRK07812 283 PFNAFLIAQGLETLSL-RIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG-GVEAG 360 (436)
T ss_pred HHHHHHHhcCcCcHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC-CHHHH
Confidence 6777777777777665 88999999999999999988764 3332 1246678888864 22356
Q ss_pred HHHHHHHHhcCceec----------cC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 305 ACLLKKLEEHGVLVM----------PE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~----------~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
..|.+.|+--.+... |. ..+.+|+++. + |+.+.+++.|.+++++.++
T Consensus 361 ~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvG--l--Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 361 KAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVG--I--EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred HHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhhhc
Confidence 677777743322221 11 2346999985 3 6788888888888887653
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=198.35 Aligned_cols=326 Identities=16% Similarity=0.105 Sum_probs=224.8
Q ss_pred CCChHHHHHHHHHcCCCCC-CccCC----ChHHHHHHHHHHHHhCCC-C---e--EEcCCchHHHHHHHHHhhhh-----
Q 018243 13 VTKPTEAMRAAMASAEVDD-DVLMH----DPTAFRLETEMAKVMGKE-A---G--LFVPSGTMGNLISVLVHCET----- 76 (359)
Q Consensus 13 ~~~~~~~~~~a~~~~~~~~-~~~~~----~~~~~~l~~~la~~~~~~-~---~--~~~~~gt~a~~~~l~~~~~~----- 76 (359)
.+++.|++.+.+....... ..+.. .+...++++.+++++|.+ . . .++++||+|+..++.++..+
T Consensus 50 tt~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~ 129 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRM 129 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHH
Confidence 4566687888776644211 11111 244567777789999987 2 2 44799999999998776421
Q ss_pred --c-----CCeEEecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 77 --R-----GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 77 --~-----g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
. ...|+++...|++..+ + ++..|++++.++.+.+ +.+|+++|++.++ +++.+|.+ +..+|
T Consensus 130 ~~~g~~~~~~~ii~s~~~H~sv~k-a--~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~--------~~t~lV~~-t~g~t 197 (431)
T TIGR01788 130 EAAGKPTDKPNLVMGSNVQVCWEK-F--ARYFDVELREVPMDPGRYVIDPEQVVEAVD--------ENTIGVVC-ILGTT 197 (431)
T ss_pred HhcCCCCCCcEEEEcCcchHHHHH-H--HHHcCceeEEEecCCCceeeCHHHHHHHHh--------hCCeEEEE-EeCCC
Confidence 1 1369999999999876 3 5667888888888765 5899999999998 67778777 55666
Q ss_pred CCceecChhhHHHHHHHHHHc------CcEEEEecccccchhhhc-CchhHhh-hcCccEEEEeccccCCCcee-eEEec
Q 018243 149 CGGRCLSVEYTDSVGEIAKKH------GLKLHIDGARIFNAAVAL-GVPVRRL-VQAADSASVCLSKGLGAPVG-SVIVG 219 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~-~~~~~~~-~~~~d~~~~s~~K~~g~~~g-g~~~~ 219 (359)
.||.+-| +++|.++|+++ |+++++|.+|+.+..+.. +.....+ ..++|.+++|.||++.+|.| |+++.
T Consensus 198 ~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~ 274 (431)
T TIGR01788 198 YTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIW 274 (431)
T ss_pred CCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEE
Confidence 9999877 89999999999 999999999865443221 1111111 24789999999999867887 77776
Q ss_pred CHH--HHHHHHHHHHhhCCC-------cchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC
Q 018243 220 SKE--FIKKARRLRKTLGGG-------MRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA 286 (359)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 286 (359)
++. +.+.+.....+.+.. .+..+......+..+ ....++..++..++++++.+.|++.|++++..+.
T Consensus 275 r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~ 354 (431)
T TIGR01788 275 RDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG 354 (431)
T ss_pred eChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC
Confidence 433 222221111111111 111111111222232 2445557788889999999999999889987542
Q ss_pred ccceEEEEEeccc--hHHHHHHHHHHHHhcCcee----cc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITED--SKLYAACLLKKLEEHGVLV----MP---ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~----~~---~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+++.|++... ...+..++.+.|.++|+.+ .| .+...+|+++.+..+.+.++.+++.|..++.++
T Consensus 355 ~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 355 SGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred CCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 4788888888641 1246678999999999874 22 245679999988899999999999999988765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=201.71 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=201.4
Q ss_pred cccccccCCCCCC--hHHHHHHHHHcCCCCC---Ccc-----CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK--PTEAMRAAMASAEVDD---DVL-----MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~--~~~~~~~a~~~~~~~~---~~~-----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
..++||.+.++.+ -+|++.+++.+..... ... ...+...++++.++++++. ..+++++|++|+..++..
T Consensus 46 ~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~ 124 (402)
T PRK07505 46 HTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPL 124 (402)
T ss_pred ceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHH
Confidence 3579998866553 3488888888754321 111 1245678999999999998 778889999999988876
Q ss_pred hhh-----hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 73 HCE-----TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 73 ~~~-----~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+.. .+++.|+.....|.+...... ....+.+++.++.+ |++.+++.++ ++++++++.++.
T Consensus 125 ~~~~~~~~~~~~vi~~~~~~H~s~~~~~~-~~~~~~~v~~~~~~-----d~~~l~~~~~--------~~~~~~vl~~p~- 189 (402)
T PRK07505 125 LASGHLTGGVPPHMVFDKNAHASLNILKG-ICADETEVETIDHN-----DLDALEDICK--------TNKTVAYVADGV- 189 (402)
T ss_pred HHhcccCCCCCCEEEEchhhhHhHHhhhh-hhhcCCeEEEeCCC-----CHHHHHHHHh--------cCCCEEEEEecc-
Confidence 542 122234445566665421011 22234566777664 8999999887 455677775554
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--Hhhhc-Ccc--EEEEeccccCCCceeeEEe-cCH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQ-AAD--SASVCLSKGLGAPVGSVIV-GSK 221 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~-~~d--~~~~s~~K~~g~~~gg~~~-~~~ 221 (359)
||+|.+.+ +++|.++|+++|+++|+||+|+++.+...+... ..+.. ..| +++.|++|.++++ ||+++ .++
T Consensus 190 ~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~~~~~~ 265 (402)
T PRK07505 190 YSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVIMLGDA 265 (402)
T ss_pred cccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEEEeCCH
Confidence 59999988 799999999999999999998655443333221 12221 234 4455999999864 56655 578
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH----HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV----LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
++.+.++.....+..+.+.+...++++..+++... .+..++..++...+.+.+... . ......+.++.+.
T Consensus 266 ~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~--~g~~~~i~~~~~~ 339 (402)
T PRK07505 266 EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE----Q--SGSFLPIRLIYIG 339 (402)
T ss_pred HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc----C--CCCCCCEEEEEeC
Confidence 88888765443332222233345555555554221 112222333332222221110 1 1112233334433
Q ss_pred cchHHHHHHHHHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
. .....++.+.|.++||.+.+. +..++|++++..++++++++++++|++++++
T Consensus 340 ~--~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 340 D--EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred C--HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 2 235678999999999998553 3368999998889999999999999988754
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=197.10 Aligned_cols=287 Identities=20% Similarity=0.202 Sum_probs=205.3
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|...++|+.++++.|.+++++++||++|+..++.+++ ++||+|+++...|.++.... ......|++++.++.+
T Consensus 63 ~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~---- 137 (433)
T PRK08134 63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG---- 137 (433)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC----
Confidence 67889999999999999999999999999999999886 69999999999987654310 0124478888888764
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ ++|++|+++++ +||+|.+.+ +++|.++|+++|+++|+|++++.+.. .. ++.
T Consensus 138 -d~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~---~~---pl~ 198 (433)
T PRK08134 138 -DIDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL---LR---PFE 198 (433)
T ss_pred -CHHHHHHhcC--------CCCeEEEEECC-CcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc---CC---chh
Confidence 8999999999 78999999876 569999988 89999999999999999999754332 11 223
Q ss_pred cCccEEEEeccccCCCce---eeEEecCHH--------------------------------HHHHHH-HHHHhhCCCcc
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVGSKE--------------------------------FIKKAR-RLRKTLGGGMR 239 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~~~~--------------------------------~~~~~~-~~~~~~~~~~~ 239 (359)
.++|++++|.||++|++. ||+++.... +..+.+ ......|..
T Consensus 199 ~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~-- 276 (433)
T PRK08134 199 HGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGAC-- 276 (433)
T ss_pred cCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCC--
Confidence 489999999999998653 455542111 001111 011223333
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC----------------CccceEEEEEeccchHH
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKL 302 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~ 302 (359)
.++..++....+++.... ++++..+++..+.+.|++.|.+. +..| ...+.++.|.+.. ...
T Consensus 277 ls~~~A~l~~~gL~tl~~-R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~-~~~ 354 (433)
T PRK08134 277 LSPMNAWQLLQGIETLPL-RMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG-GRA 354 (433)
T ss_pred CCHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC-CHH
Confidence 466677777777777655 88899999999999999987653 2222 1246677888864 223
Q ss_pred HHHHHHHHHHhcCcee----------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 303 YAACLLKKLEEHGVLV----------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~----------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
...+|.+.|+--.+.. .|. ..+.||+++. + |+.+++++.|.+++++..+
T Consensus 355 ~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvG--l--E~~~dli~dl~~Al~~~~~ 430 (433)
T PRK08134 355 AGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIG--L--EDADDLIDDLKRALKAAEK 430 (433)
T ss_pred HHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhhhh
Confidence 5667777774322221 111 2346999995 3 5788888888888877543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=196.95 Aligned_cols=283 Identities=20% Similarity=0.222 Sum_probs=207.8
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|...++++.+++++|.+.++++++|+.|+..++. ++ ++||+|+++.+.|.+..... ..+...|++++.++..
T Consensus 46 ~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~---- 119 (378)
T TIGR01329 46 NPTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT---- 119 (378)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC----
Confidence 56789999999999999888999999988776554 55 69999999999887654300 1234578888888754
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++.| |+|.+.+ +++|.++|+++|+++|+|+++..+.. ..++.
T Consensus 120 -d~~~le~~i~--------~~tklv~le~psn-ptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~------~~~l~ 180 (378)
T TIGR01329 120 -DLDKVKAALG--------PKTKLVLLESPTN-PLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL------CNPLE 180 (378)
T ss_pred -CHHHHHHhcC--------cCceEEEEECCCC-CCCeeec---HHHHHHHHHHcCCEEEEECCCccccc------CChhh
Confidence 8999999998 7899999977665 9999887 89999999999999999999633211 12223
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|++|+++++. +|+++. ++++.++++..+...|... ++..++.....++.... ++++..+++..+.
T Consensus 181 ~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~--~~~~a~l~~~~l~tl~~-R~e~~~~na~~la 257 (378)
T TIGR01329 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGL--APFDCWLLLRGIKTLAI-RIEKQQENARAIA 257 (378)
T ss_pred cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcC--CHHHHHHHHccCCCHHH-HHHHHHHHHHHHH
Confidence 378999999999997653 577766 5666677776666555544 44455555555555544 8888899999999
Q ss_pred HHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--------------
Q 018243 272 EGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-------------- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------- 321 (359)
+.|++.|.+. +..+ ...+.++.|.+.. ...+.+|.+.|+..++.+..|
T Consensus 258 ~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~--~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~ 335 (378)
T TIGR01329 258 MFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS--VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSH 335 (378)
T ss_pred HHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhCcCcccccCCCCCCceeeCCCcccc
Confidence 9999876552 2221 1245678888843 224789999997777665322
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+|+++. + |+.+++++-|++++++.
T Consensus 336 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 336 ASIPAEVREERGLPEDLVRLSVG--I--EDVDDLISDLDIAFVTA 376 (378)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHHhc
Confidence 1346999984 3 57888888888888754
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=201.65 Aligned_cols=318 Identities=16% Similarity=0.131 Sum_probs=209.8
Q ss_pred HHHHHHHHHcCCCCCC--------ccCCChHHHH----HHHHHHHHhCCCCe-E-E---cCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVDDD--------VLMHDPTAFR----LETEMAKVMGKEAG-L-F---VPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~--------~~~~~~~~~~----l~~~la~~~~~~~~-~-~---~~~gt~a~~~~l~~~~~~~g~ 79 (359)
+|.+++++.....+.. .+........ .++.++++||.+.. + + ++||++++..++.++. ++||
T Consensus 47 s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~-~~gd 125 (452)
T PTZ00094 47 SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL-QPHD 125 (452)
T ss_pred CHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc-CCCC
Confidence 4677777776443221 1222333344 44689999998753 2 3 3689999999999997 5999
Q ss_pred eEEecCCCcceeeccccccc-----cC--CccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 80 EVILGDNSHIHIYENGGIST-----IG--GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~-----~~--g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
+|+++...|.+....+.... .. +.++..++.+.+|.+|+++|++.+++ .+++++++. .+ .+|.
T Consensus 126 ~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~-------~~~~lvi~~--~s-~~g~ 195 (452)
T PTZ00094 126 RIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA-------FRPKLIIAG--AS-AYPR 195 (452)
T ss_pred EEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH-------hCCCEEEEe--CC-CCCC
Confidence 99999998877664210000 01 12334455566789999999999973 356666662 23 3788
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~ 232 (359)
..| +++|.++|+++|+++++|++|+.|..+..... .++ .++|++++|+||||++|.||+++.++++.+.+.....
T Consensus 196 ~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~-~~~-~~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~ 270 (452)
T PTZ00094 196 DID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLP-SPF-PYADVVTTTTHKSLRGPRSGLIFYRKKVKPDIENKIN 270 (452)
T ss_pred ccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCC-CCC-CCCcEEEcCCccCCCCCCceEEEEecccchHHHHhhc
Confidence 777 78999999999999999999988877532211 122 2799999999999988888877776655443322111
Q ss_pred -hhCCCc--chhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 233 -TLGGGM--RQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 233 -~~~~~~--~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
.....+ .......++...+++. ..+...++..+++++|.+.|++. |+++..+........+.+.. .+.+..
T Consensus 271 ~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~-~~~~~~ 348 (452)
T PTZ00094 271 EAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRP-FGITGS 348 (452)
T ss_pred cccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCc-CCCCHH
Confidence 111110 1122223333334432 23346677888999999999887 88875432223445555543 235777
Q ss_pred HHHHHHHhcCceec----cC-----CCcEEEEEeCCCCC----HHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVM----PE-----SSTRVRIVVHHQIS----ANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 306 ~~~~~l~~~gi~~~----~~-----~~~~lRi~~~~~~~----~~~i~~~~~~l~~~~~~ 352 (359)
.+...|.++||.+. |. .+.++|++++..++ ++|++++++.|.++++.
T Consensus 349 ~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 349 KMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 88899988999983 22 23689999965554 99999999999999875
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=196.11 Aligned_cols=283 Identities=18% Similarity=0.215 Sum_probs=200.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM 116 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 116 (359)
.|....+|+.++++.|.+.++++++|+.|+..++.+++ ++||+|+++++.|.++..........|++++.++..
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~----- 119 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT----- 119 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC-----
Confidence 67889999999999999999999999999999998887 599999999998765432111245678888888754
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ 196 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 196 (359)
|++++++.++ +++++|++++++ ||||.+.+ +++|.++|+++|+++|+|++++.+.. ..+...
T Consensus 120 d~e~l~~~l~--------~~tklV~vesp~-NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~------~~~~~~ 181 (397)
T PRK05939 120 DVQNVAAAIR--------PNTRMVFVETIA-NPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWL------FRPKDV 181 (397)
T ss_pred CHHHHHHhCC--------CCCeEEEEECCC-CCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccc------cCcccc
Confidence 8999999998 789999997655 59999755 89999999999999999998643321 122223
Q ss_pred CccEEEEeccccCCCce---eeEEecCHH--------H-------------HHHHH-HHHHhhCCCcchhHHHHHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV---GSVIVGSKE--------F-------------IKKAR-RLRKTLGGGMRQVGVLCAAALVA 251 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~---gg~~~~~~~--------~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
++|+++.|+||++++.. ||+++.+.. + +..++ ......|... ++..++....+
T Consensus 182 gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--~p~~a~l~~rg 259 (397)
T PRK05939 182 GASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATL--SSEAAHRIAIG 259 (397)
T ss_pred CCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCC--CHHHHHHHHcC
Confidence 78999999999998643 354443221 1 11111 1112345444 55666666777
Q ss_pred HHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHh--
Q 018243 252 LQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEE-- 313 (359)
Q Consensus 252 l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 313 (359)
++.... ++++..+++..+.+.|++.|.+. +..|. ..+.++.|.+... .....|.+.|+-
T Consensus 260 l~tl~~-R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~--~~~~~f~~~l~l~~ 336 (397)
T PRK05939 260 AETLAL-RVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG--IDCFDFLNRLKLVI 336 (397)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH--HHHHHHHHhCCcce
Confidence 777655 88888899999999999987664 33321 3466788888752 255667776642
Q ss_pred cCcee--------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 314 HGVLV--------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 314 ~gi~~--------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+... .|. .++.+|+++. + |+++++++.|.+++++
T Consensus 337 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG--l--Ed~~dLi~dl~~Al~~ 396 (397)
T PRK05939 337 KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG--I--EDEADLIADFEQALDA 396 (397)
T ss_pred EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC--C--CCHHHHHHHHHHHHhc
Confidence 22111 010 2356999995 3 5788888888887753
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=198.27 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=207.5
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.+.+.+++++||++|+..++.+++ ++||+|+++.|.|..+.... ......|++++.++..
T Consensus 82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~---- 156 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADG---- 156 (427)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCC----
Confidence 57789999999999999999999999999888888888 59999999999987764310 1134568776666421
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH---cCcEEEEecccccchhhhcCchhH
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK---HGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~---~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
.|.+.+++.+++.... +++++|++++ ++||||.+++.+++.+|++.|++ +++++|+|+++... .. ..
T Consensus 157 ~d~~~l~~~l~~~~~~---~~tklv~les-P~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~-~~-----~~ 226 (427)
T PRK07049 157 LSEAAIGAAAEAAAAK---GRVSLILIET-PANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP-VF-----QK 226 (427)
T ss_pred CCHHHHHHHHHhhccC---CCceEEEEEC-CCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc-cc-----CC
Confidence 3677787777521100 4789999975 55599999997777777766543 79999999984221 11 11
Q ss_pred hhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 018243 193 RLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL 269 (359)
Q Consensus 193 ~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (359)
++..++|+++.|+||++|+. .+|++++++++.+.++..+..++.+. ++..+.++..+++.... ++++..+++..
T Consensus 227 pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~l--s~~~a~l~~r~L~tl~~-R~~~~~~~a~~ 303 (427)
T PRK07049 227 PLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQL--DPHSCWMLGRSLETLVL-RMERANRNARA 303 (427)
T ss_pred ccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCC--CHHHHHHHHcCCChHHH-HHHHHHHHHHH
Confidence 22336788889999999852 34889999999999888777776555 55666677777776554 77788999999
Q ss_pred HHHHHhcCCCce-EecCC-----------------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC
Q 018243 270 LAEGLNQLKGLR-VDVDA-----------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE 321 (359)
Q Consensus 270 l~~~l~~~~g~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~ 321 (359)
+.+.|++.|++. +..|+ ..+..+.|.+.. ......+|.+.|+--.+.+. |.
T Consensus 304 la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~ 382 (427)
T PRK07049 304 VAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG-GQAAAFRFLNALQIFKLAVSLGGTESLASHPA 382 (427)
T ss_pred HHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC-CHHHHHHHHHcCcccEEcccCCCCCceeeCCC
Confidence 999999988774 33331 235567788764 22346677777743332221 10
Q ss_pred -----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 -----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 -----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.||+++. + |+.+++++.|.+++++
T Consensus 383 ~~~h~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al~~ 426 (427)
T PRK07049 383 SMTHSGVPADVRERIGVLESTIRLSIG--I--EHPDDLIADLAQALDA 426 (427)
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEeC--c--CCHHHHHHHHHHHHhc
Confidence 2346999985 3 5788888888887753
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=194.26 Aligned_cols=279 Identities=16% Similarity=0.156 Sum_probs=200.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM 116 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 116 (359)
.|...+||+.++++.+.+++++++||++|+..++ .++ ++||+|+++.+.|..... .+.......-+.+ ++..
T Consensus 53 ~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l-~~l-~~GD~VI~~~~~yg~~~~--~~~~~~~~~~~~~----~~~~ 124 (364)
T PRK07269 53 NPTRAKLEETLAAIESADYALATSSGMSAIVLAF-SVF-PVGSKVVAVRDLYGGSFR--WFNQQEKEGRFHF----TYAN 124 (364)
T ss_pred CccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHH-HHh-CCCCEEEEecCCcCchHH--HHHHHHhcCcEEE----EecC
Confidence 6778999999999999999999999999999888 455 599999999988755432 1011100000111 1224
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ 196 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 196 (359)
|++++++.++ +++++|++++|.| |||.+.+ +++|+++|+++|+++|+|+++... ... .++..
T Consensus 125 d~~~l~~~i~--------~~TklV~lesP~N-Ptg~~~d---i~~I~~la~~~gi~vvvD~t~~~~---~~~---~pl~~ 186 (364)
T PRK07269 125 TEEELIAAIE--------EDTDIVYIETPTN-PLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSP---IYQ---RPIEL 186 (364)
T ss_pred CHHHHHHhcC--------cCceEEEEECCCC-CCCeeeC---HHHHHHHHHHcCCEEEEECCCccc---ccC---Cchhh
Confidence 8999999998 7899999966655 9999876 899999999999999999985221 112 22345
Q ss_pred CccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
++|++++|++|+++++. ||+++. ++++.++++..+...|... ++..++.+..+++.... ++++..+++..+.+
T Consensus 187 gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~--s~~~a~l~~~~L~tL~~-r~~~~~~na~~~a~ 263 (364)
T PRK07269 187 GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVL--SPFDSYLLMRGLKTLSL-RMERSTANAQEVVA 263 (364)
T ss_pred CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCC--CHHHHHHHHcCCCcHHH-HHHHHHHHHHHHHH
Confidence 89999999999998643 677666 6778888776655555444 67777788888877544 88899999999999
Q ss_pred HHhcCCCce-EecCCccceEEEEEeccchHHHHHHHHHHHHhc----------CceeccC-----------------CCc
Q 018243 273 GLNQLKGLR-VDVDAVETNIVYFEITEDSKLYAACLLKKLEEH----------GVLVMPE-----------------SST 324 (359)
Q Consensus 273 ~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------gi~~~~~-----------------~~~ 324 (359)
+|++.|.+. +..| +.+..+.|.+.. ......|.+.|.-. ++.+.|. .++
T Consensus 264 ~L~~~p~v~~v~yp-g~gg~~sf~~~~--~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~ 340 (364)
T PRK07269 264 FLKKSPAVKEVLYT-GKGGMISFKVAD--ETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDD 340 (364)
T ss_pred HHHhCCCccEEeCC-CcCcEEEEEECC--HHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCC
Confidence 999998875 4444 467777777753 23455666665322 2222221 234
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 325 RVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 325 ~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+|+++. + |+.+.+++-|.++++
T Consensus 341 liRlsvG--l--E~~~dli~dl~~al~ 363 (364)
T PRK07269 341 LLRLSIG--I--EDARDLIADLKQALE 363 (364)
T ss_pred eEEEEec--c--CCHHHHHHHHHHHhc
Confidence 6999985 3 578888888887764
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=192.32 Aligned_cols=287 Identities=18% Similarity=0.130 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|....+++.++.+-+.+.+++++||+.|+..++.+++ ++||+|+++++.|++..... ...+..|+++..++.+
T Consensus 62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~--- 137 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE--- 137 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC---
Confidence 367788999999999988888999999999999998888 59999999999988865300 2356778888888543
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
+.+.+++.++ +++++|+++++.| |++.. .++++|+++|+++|+++|+|+++.. +....++
T Consensus 138 --~~e~l~~al~--------~~TklV~lesPsN-P~l~v---~dl~~I~~la~~~g~~vvVD~t~a~------p~~~~pl 197 (395)
T PRK05967 138 --IGAGIAKLMR--------PNTKVVHTEAPGS-NTFEM---QDIPAIAEAAHRHGAIVMMDNTWAT------PLYFRPL 197 (395)
T ss_pred --CHHHHHHhcC--------cCceEEEEECCCC-CCCcH---HHHHHHHHHHHHhCCEEEEECCccC------ceecChh
Confidence 4577999998 7899999977665 87764 4599999999999999999998532 2223444
Q ss_pred hcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
..++|+++.|.+|++++- .+|+++.+++..+++.......|... ++..++....+++...- ++++..+++..+.
T Consensus 198 ~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~--~p~da~l~~rgl~Tl~l-R~~~~~~na~~lA 274 (395)
T PRK05967 198 DFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCA--GPDDTYQILRGLRTMGI-RLEHHRKSALEIA 274 (395)
T ss_pred HcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHcCcccHHH-HHHHHHHHHHHHH
Confidence 458999999999998753 34778888877777765556666655 56667777777777655 8889999999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccc---hHHHHHHHHHHHHhcCceeccC-----------
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITED---SKLYAACLLKKLEEHGVLVMPE----------- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~~----------- 321 (359)
+.|++.|.++ +..|. ..+..+.|.++.. ....+.+|.+.|+-..+.+.-|
T Consensus 275 ~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~ 354 (395)
T PRK05967 275 RWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHVKL 354 (395)
T ss_pred HHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeCCC
Confidence 9999987763 43331 3466788888632 1234567777764322222111
Q ss_pred ----------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 ----------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 ----------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+|+++. + |+.+.+++-|.++++..
T Consensus 355 ~~~~~~~~~~~~~liRlSvG--l--Ed~~dLi~Dl~~Al~~~ 392 (395)
T PRK05967 355 GDRTVAKAPYAGPVIRLQIG--L--EDVPDLKADLERGFAAA 392 (395)
T ss_pred ChhHhhhccCCCCeEEEEec--c--CCHHHHHHHHHHHHHhh
Confidence 1246999985 3 57888888888887765
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=194.76 Aligned_cols=283 Identities=20% Similarity=0.239 Sum_probs=202.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||+.|+..++ .++ ++||+|+++++.|.+.+... ......|+++..++..
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l-~~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~---- 122 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLF-QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS---- 122 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH-HHc-CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC----
Confidence 5778999999999999999999999999887555 566 59999999999886654300 1245567777777543
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++. ||+|.+.+ +++|.++|+++|+++|+|++++.+. ...+ +.
T Consensus 123 -d~e~l~~ai~--------~~t~lV~lesP~-Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~---~~~p---~~ 183 (380)
T PRK06176 123 -DLSQIKKAIK--------PNTKALYLETPS-NPLLKITD---LAQCASVAKDHGLLTIVDNTFATPY---YQNP---LL 183 (380)
T ss_pred -CHHHHHHhcC--------cCceEEEEECCC-CCCceecC---HHHHHHHHHHcCCEEEEECCccccc---cCCc---cc
Confidence 8999999988 789999997765 59999887 8899999999999999999975322 1222 23
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|++++|++|+++++. ||+++. ++++.++++..+...+...+ +..+.....+++... .++++..+++..+.
T Consensus 184 ~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~--~~~~~l~~~gl~tl~-~R~~~~~~~a~~la 260 (380)
T PRK06176 184 LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLG--PQDSWLLQRGIKTLG-LRMEAHQKNALCVA 260 (380)
T ss_pred cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCC--HHHHHHHHhccCcHH-HHHHHHHHHHHHHH
Confidence 489999999999998753 576666 56777777777776665553 333344444444333 37778888899999
Q ss_pred HHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC----
Q 018243 272 EGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~---- 321 (359)
+.|++.|.+. +..+ ...+..+.|.+.. .....+|.+.|+-..+.. .|.
T Consensus 261 ~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~--~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~ 338 (380)
T PRK06176 261 EFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN--DSEAVAFVESLKLFILGESLGGVESLVGIPAFMTH 338 (380)
T ss_pred HHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--HHHHHHHHHcCCcceEccCCCCCCceeeCCccccc
Confidence 9999887664 2222 1346678888864 235667777764322222 111
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+|+++. + |+++++++-|++++++.
T Consensus 339 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 339 ACIPKEQREAAGIRDGLVRLSVG--I--EHEQDLLEDLEQAFAKI 379 (380)
T ss_pred ccCCHHHHHhcCCCcCeEEEEec--c--CCHHHHHHHHHHHHhhc
Confidence 2346999985 3 57888888888888754
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-25 Score=192.98 Aligned_cols=323 Identities=16% Similarity=0.143 Sum_probs=213.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|++.+++.+....... ....+...++.+.+++..+.+...+++||++|+..+++.+..
T Consensus 15 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~ 94 (382)
T PLN00144 15 KEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARK 94 (382)
T ss_pred CEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHH
Confidence 367899887 4455569999888875543211 122566678888888877766778999999999999998864
Q ss_pred hc--------------CCeEEecCC-CcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCC
Q 018243 76 TR--------------GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDP 128 (359)
Q Consensus 76 ~~--------------g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~ 128 (359)
.. ..+|+.-.. .|+.+.. + ....+. .+..++.+ |++.+++.++.
T Consensus 95 ~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~--~-~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~- 165 (382)
T PLN00144 95 YQRVRAPDKKDPAASSATEFVSFSNSFHGRTLG--A-LALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQK- 165 (382)
T ss_pred HHhccCCCCccccccccceEEEECCCcccccHH--H-HhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCC-
Confidence 21 235665554 4444322 1 111111 11222222 78999988863
Q ss_pred CCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEec
Q 018243 129 KGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCL 205 (359)
Q Consensus 129 ~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~ 205 (359)
.++++|++++. +||+|... +.+++++|+++|++||+++|+||++.. +...+.... .....+| +.++
T Consensus 166 ------~~~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg--~gr~g~~~~~~~~~~~PD--i~t~ 234 (382)
T PLN00144 166 ------GKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG--LGRTGYLWAHEAYGVEPD--IMTL 234 (382)
T ss_pred ------CCeEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchHhhhhhcCCCCC--EEEe
Confidence 57899999888 55766543 457799999999999999999999743 222333211 1222456 5577
Q ss_pred cccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHH----hcCCC
Q 018243 206 SKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGL----NQLKG 279 (359)
Q Consensus 206 ~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l----~~~~g 279 (359)
+|.+++... |++++++++.+.+... ..+.++..+++.++++...++...+ +..++..++.+++++.| ++.|.
T Consensus 235 sK~l~~G~pig~v~~~~~~~~~~~~~--~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~ 312 (382)
T PLN00144 235 AKPLAGGLPIGAVLVTEKVASAINPG--DHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPH 312 (382)
T ss_pred cccccCCcceEEEEEcHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 899864333 7788888888876432 2344555567777777766643322 23344444444544444 44433
Q ss_pred ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.-. ...+.++|+.+.. ....+.+.+.++||.+.+.+ ...+|++++...+++++++++++|.+++.++
T Consensus 313 ~~~v--rg~G~~~~l~l~~----~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 313 VKEV--RGVGLLVGIQLDV----PAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred ceee--ecCceEEEEEecC----ccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 3221 2378889998843 45688999999999998765 4899999987799999999999999998764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=193.47 Aligned_cols=280 Identities=21% Similarity=0.231 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....|++.++++.|.+.+++++||+.++..++ .++ ++||+|+++++.|.+.+... ......|++++.++..
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 122 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLF-SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS---- 122 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHh-CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC----
Confidence 6788999999999999999999999988776554 455 59999999999987665411 1234568888888643
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|++++|+ ||||.+.+ +++|.++|+++|+++|+|+++..+.. .. ++.
T Consensus 123 -d~~~l~~ai~--------~~tklV~le~P~-NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~---~~---p~~ 183 (377)
T PRK07671 123 -NLEEVEEAIR--------PNTKAIYVETPT-NPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYW---QS---PIS 183 (377)
T ss_pred -CHHHHHHhcC--------CCCeEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCCCcccc---CC---hhh
Confidence 8999999998 789999997655 49999866 89999999999999999999643211 22 223
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|++|+++++. +|+++. ++++.++++..+...+... ++..++.+...++.... ++++..+++..+.
T Consensus 184 ~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~--~~~~a~l~~~~l~tl~~-R~~~~~~na~~la 260 (377)
T PRK07671 184 LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGIL--GPQDSWLLLRGLKTLGI-RMEEHETNSRAIA 260 (377)
T ss_pred hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCC--CHHHHHHHHcCcChHHH-HHHHHHHHHHHHH
Confidence 478999999999998763 465554 6788888888877777665 44555555555555433 7888889999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC----
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~---- 321 (359)
++|++.|++. +..|. ..+..+.|.+.. ......|.+.|+--.+.+ .|.
T Consensus 261 ~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~--~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~ 338 (377)
T PRK07671 261 EFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGS--EETANKVLERLQYFTLAESLGAVESLISIPSQMTH 338 (377)
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCC--HHHHHHHHHhCCcceEccCCCCCCeEeECCCcccc
Confidence 9999987664 22221 235677788832 345667777764222111 111
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++.+|+++. + |+.+.+++-|++++
T Consensus 339 ~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~al 376 (377)
T PRK07671 339 ASIPADRRKELGITDGLIRISVG--I--EDGEDLIEDLAQAL 376 (377)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHh
Confidence 2356999995 3 57788888887765
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=199.63 Aligned_cols=326 Identities=13% Similarity=0.068 Sum_probs=210.4
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC-----C-CccC----CChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD-----D-DVLM----HDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~-----~-~~~~----~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l 70 (359)
.++++|.++..+.+++.+.+++.+.... . ..+. .......+++ + +++|.+. .++++|+|+++..++
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~ 103 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL 103 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence 4568888666665567777777543211 0 1111 1122233333 4 7888763 467777888888888
Q ss_pred HHhhhhcC---CeEEecCCCcceeeccc-cccccCCccc----eeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 71 LVHCETRG---SEVILGDNSHIHIYENG-GISTIGGVHP----RTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 71 ~~~~~~~g---~~vl~~~~~~~~~~~~~-~~~~~~g~~~----~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
.++. +++ +.|++++..|.+.+... ..++..|+++ +.++.+.++.++++++++.++.. .+++++|++
T Consensus 104 ~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~t~lv~~ 177 (406)
T TIGR01814 104 ASFY-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKN-----GDDIAVILL 177 (406)
T ss_pred HHhc-CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhc-----CCCeEEEEE
Confidence 8765 343 36888889988755411 1134567776 45555556788999999888531 157899999
Q ss_pred eccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHH
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE 222 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~ 222 (359)
+++.+ .||...| +++|.++|+++|+++++|++|+.|... ..... .++|++++|.|||+++|.||.++..++
T Consensus 178 ~~v~~-~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~---id~~~--~gvD~~~~s~hK~l~g~pG~~l~v~~~ 248 (406)
T TIGR01814 178 SGVQY-YTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVP---LDLHD--WGVDFACWCTYKYLNAGPGAGAFVHEK 248 (406)
T ss_pred ecccc-ccceecC---HHHHHHHHHHcCCEEEEEcccccCCcc---ccccc--CCCCEEEEcCccccCCCCCeEEEEehh
Confidence 77666 8999988 899999999999999999999886653 22223 379999999999985443544444333
Q ss_pred HHHHHHHHHHh-h--------------C-------CCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhc
Q 018243 223 FIKKARRLRKT-L--------------G-------GGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 223 ~~~~~~~~~~~-~--------------~-------~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~ 276 (359)
....+...... + + .++ .+....++...+++ ...+...++..++.+++++.|++
T Consensus 249 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~ 327 (406)
T TIGR01814 249 HAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISN-PPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKA 327 (406)
T ss_pred hhhhcCCCCCcccCCCCccccccccccCCCccceeeCC-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 22222110000 0 0 011 11122222223332 23444666777888899998887
Q ss_pred C----CCceEecCC---ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEe-CCCCCHHHHHHHHHHHHH
Q 018243 277 L----KGLRVDVDA---VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVV-HHQISANDVHYTLSCFQK 348 (359)
Q Consensus 277 ~----~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~-~~~~~~~~i~~~~~~l~~ 348 (359)
+ +++++..+. ..++++.+.++. +..++.+.|.++||.+.......+|+++ +.+++++|+++++++|++
T Consensus 328 ~~~~~~~~~i~~~~~~~~r~~~v~~~~~~----~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l~~~l~~ 403 (406)
T TIGR01814 328 RCGGPPVLTIITPRDHAQRGCQLSLTHPV----PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDAVNVLEE 403 (406)
T ss_pred hcCCCCceEEeCCCChhhcCCeEEEEecC----CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHHHHHHHHHH
Confidence 5 357775432 134566666652 5678999998899988766667999998 678999999999999987
Q ss_pred HH
Q 018243 349 IY 350 (359)
Q Consensus 349 ~~ 350 (359)
++
T Consensus 404 ~~ 405 (406)
T TIGR01814 404 IL 405 (406)
T ss_pred Hh
Confidence 65
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=180.93 Aligned_cols=323 Identities=23% Similarity=0.245 Sum_probs=231.0
Q ss_pred cCCCCCChHHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHHHhhh
Q 018243 9 RSDTVTKPTEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~ 75 (359)
+|.|+.. +.+.+++.....+ ..+|+.-+..+.+| ++.+++||.+.+ +...||++|+..++.+++
T Consensus 33 ASEN~~S--~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All- 109 (413)
T COG0112 33 ASENFTS--PAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALL- 109 (413)
T ss_pred eccccCC--HHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHc-
Confidence 3445554 5666666543322 34577766665555 457788999976 888999999999999999
Q ss_pred hcCCeEEecCCCcceeeccccccccCCc--cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGV--HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
+|||+|+..+..|......+......|. +.+.++.+ +++.+|.|++++...+ .++++|+. .....| .
T Consensus 110 ~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e-------~kPK~ii~-G~SaY~--r 179 (413)
T COG0112 110 QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE-------VKPKLIIA-GGSAYS--R 179 (413)
T ss_pred CCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH-------hCCCEEEE-Cccccc--c
Confidence 5999999877777766554433445554 34445666 5689999999999997 78999988 333222 3
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH-HHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK-EFIKKARRLR 231 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~-~~~~~~~~~~ 231 (359)
.+ ++++++++|++.|+++++|.||..|... .|.-..++. .+|+++.|.||+|.+|.||++++++ ++.++++...
T Consensus 180 ~i---d~~~~reIad~VGA~L~~DmAHiaGLVA-~G~~p~P~~-~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aV 254 (413)
T COG0112 180 PI---DFKRFREIADEVGAYLMVDMAHVAGLIA-GGVHPNPLP-HADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAV 254 (413)
T ss_pred cc---CHHHHHHHHHHhCceEEehHHHHHHHHh-cccCCCCCC-ccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhc
Confidence 44 4899999999999999999999777654 444445554 6999999999999999999888875 7777765422
Q ss_pred Hh-hCCCcchhHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 232 KT-LGGGMRQVGVLCAAA---LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 232 ~~-~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
.. .-++. ..-.+++-+ ..+++-..++..++..+|++.|.+.|.+. |+++.........+.+.+.. .+.+....
T Consensus 255 FPg~qggp-l~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~-~~~~Gk~a 331 (413)
T COG0112 255 FPGLQGGP-LMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRS-KGLTGKKA 331 (413)
T ss_pred CCccCCCh-HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEccc-CCCCHHHH
Confidence 11 11111 111222222 23334444457788889999999999998 99998777777788888884 35678888
Q ss_pred HHHHHhcCcee----ccC------CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLV----MPE------SSTRVRIVV----HHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 308 ~~~l~~~gi~~----~~~------~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
...|.+.||.+ .|+ .+.+|||.. ..+..+++++++.+.|.++++.
T Consensus 332 e~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 332 EAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred HHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 88889999987 333 355799954 4467789999999999998875
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=194.64 Aligned_cols=322 Identities=18% Similarity=0.138 Sum_probs=213.6
Q ss_pred cCCCCCChHHHHHHHHHcCC-----CC---CCccCCChHHHHHHH----HHHHHhCCCCe-EE----cCCchHHHHHHHH
Q 018243 9 RSDTVTKPTEAMRAAMASAE-----VD---DDVLMHDPTAFRLET----EMAKVMGKEAG-LF----VPSGTMGNLISVL 71 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~-----~~---~~~~~~~~~~~~l~~----~la~~~~~~~~-~~----~~~gt~a~~~~l~ 71 (359)
+|.|+.. +.+++++.... .+ ...|+....++++|+ +.++.|+.+.. +. ..||+.|+..++.
T Consensus 41 asen~~s--~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~ 118 (475)
T PLN03226 41 ASENFTS--RAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYT 118 (475)
T ss_pred cCCccCC--HHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHH
Confidence 3445444 45555554433 11 234555567777775 46667777653 32 3899999999999
Q ss_pred HhhhhcCCeEEecCC---Ccc---eeeccccccccCCccce----eeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 72 VHCETRGSEVILGDN---SHI---HIYENGGISTIGGVHPR----TVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~---~~~---~~~~~~~~~~~~g~~~~----~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
+++ ++||+|+..+. .|. +... + .+..+.... .+.++ +++.+|+++|++.+++ .++++|
T Consensus 119 aL~-~pgD~Il~~d~~~gGhl~H~~~~~-g--~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~-------~~pklI 187 (475)
T PLN03226 119 ALL-QPHDRIMGLDLPHGGHLSHGYQTD-G--KKISATSIYFESMPYRLDESTGLIDYDKLEKKAML-------FRPKLI 187 (475)
T ss_pred HhC-CCCCEEEECCCCcCcchhhhhhhc-c--cccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh-------cCCeEE
Confidence 999 59999998442 332 2222 1 122222211 33333 5688999999999974 466666
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS 220 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~ 220 (359)
++ +... +|+..| +++|.++|+++|+++++|++|+.|..+..+.. .++ .++|+++.|+||+|++|.||+++++
T Consensus 188 v~-~~S~--~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~-~p~-~~~Div~~t~hK~L~GP~Gg~I~~~ 259 (475)
T PLN03226 188 IA-GASA--YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAA-SPF-EYCDVVTTTTHKSLRGPRGGMIFFR 259 (475)
T ss_pred EE-ecCc--CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC-CCC-CCCeEEEecCcccccCCCceEEEEc
Confidence 55 2222 456555 78999999999999999999999887644322 222 3799999999999977889888887
Q ss_pred HHHH-----------HHHHHHH--HhhCCCcchhHHHHHHHHHHHHHh----HHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 221 KEFI-----------KKARRLR--KTLGGGMRQVGVLCAAALVALQEN----VLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 221 ~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
++.. +...... ...+....+++...++...+++.. .+.+.++..+++++|++.|++. |+.+.
T Consensus 260 ~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G~~l~ 338 (475)
T PLN03226 260 KGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-GYKLV 338 (475)
T ss_pred hhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 7544 2211111 111122222333344444445432 3346778889999999999996 99987
Q ss_pred cCCccceEEEEEeccchHHHHHHHHHHHHhcCceec----cC-----CCcEEEE----EeCCCCCHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----PE-----SSTRVRI----VVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lRi----~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.....++++.+.. .+++..++.+.|.+.||.+- |+ .+.++|+ ..+.+++++|++++.+.|.+++
T Consensus 339 ~~~t~~hi~lv~~~~-~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~ 417 (475)
T PLN03226 339 TGGTDNHLVLWDLRP-LGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAV 417 (475)
T ss_pred cCCCCCCEEEEEccC-CCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 654456778888754 34677889999999999883 22 3456898 4567889999999999999999
Q ss_pred HHH
Q 018243 351 AGV 353 (359)
Q Consensus 351 ~~~ 353 (359)
+..
T Consensus 418 ~~~ 420 (475)
T PLN03226 418 TIA 420 (475)
T ss_pred HHh
Confidence 843
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-25 Score=194.90 Aligned_cols=281 Identities=20% Similarity=0.228 Sum_probs=202.9
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+++.++++.+.+.+++++||+.++. ++..++ ++||+|+++.+.|..+.... ......|++++.++..
T Consensus 132 npt~~aLE~~lA~leg~e~ai~~~SG~aAi~-~il~ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~---- 205 (464)
T PLN02509 132 NPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT---- 205 (464)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCcHHHHHH-HHHHHh-CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC----
Confidence 4778999999999999988899999987764 444555 69999999999987754200 1134568888877543
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++.| |+|.+. ++++|+++|+++|+++|+|++++.+.. +. ++.
T Consensus 206 -d~e~l~~ai~--------~~TklV~lesPsN-PtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~~~---~~---pl~ 266 (464)
T PLN02509 206 -NLDEVAAAIG--------PQTKLVWLESPTN-PRQQIS---DIRKIAEMAHAQGALVLVDNSIMSPVL---SR---PLE 266 (464)
T ss_pred -CHHHHHHhCC--------cCCeEEEEECCCC-CCCCHH---HHHHHHHHHHHcCCEEEEECCcccccc---CC---hhh
Confidence 7899999987 7899999977665 999964 499999999999999999999754332 22 233
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|++++|++|+++++. ||+++. ++.+.+.++..+...+... ++..++.++.+++.... ++++..+++.++.
T Consensus 267 ~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l--~p~~A~l~lr~L~tL~~-R~~r~~~nA~~la 343 (464)
T PLN02509 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL--APFDCWLCLRGIKTMAL-RIEKQQENARKIA 343 (464)
T ss_pred cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCc--CHHHHHHHHhhhhhHHH-HHHHHHHHHHHHH
Confidence 478999999999998753 577775 5555566555554444333 66777777888887655 8899999999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC----
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE---- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~---- 321 (359)
+.|++.|.++ +..|. ..+..+.|.+.. ......|.+.|+--.+.+. |.
T Consensus 344 ~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh 421 (464)
T PLN02509 344 MYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421 (464)
T ss_pred HHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCC--HHHHHHHHHcCCcceEcccCCCCCceeeCCccccc
Confidence 9999988774 43331 235667777732 2345677777643222221 11
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+.||+++. + |+++++++-|+++++
T Consensus 422 ~~~~~~~~~~~Gi~~~liRlSvG--l--E~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 422 ASIPAEVREARGLTEDLVRISAG--I--EDVDDLISDLDIAFR 460 (464)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHc
Confidence 2457999995 3 578888888887775
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=194.40 Aligned_cols=284 Identities=23% Similarity=0.234 Sum_probs=203.5
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
++....+++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|....... ......|++++.++..
T Consensus 62 ~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~---- 136 (427)
T PRK05994 62 NPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD---- 136 (427)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC----
Confidence 56778999999999999999999999999999999887 59999999999987654300 1145578888888654
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++. ||+|.+.+ +++|.++|+++|+++|+|++++.+.. ..++.
T Consensus 137 -d~~~l~~ai~--------~~tklV~vesp~-NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~------~~pl~ 197 (427)
T PRK05994 137 -DPASFERAIT--------PRTKAIFIESIA-NPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL------IRPIE 197 (427)
T ss_pred -CHHHHHHhcC--------cCCeEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc------CCccc
Confidence 8899999998 789999997655 59999987 79999999999999999999754221 22233
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCH------------------H-----HHHHHH----------HHHHhhCCCcc
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSK------------------E-----FIKKAR----------RLRKTLGGGMR 239 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~------------------~-----~~~~~~----------~~~~~~~~~~~ 239 (359)
.++|+++.|++|++|++ .||+++... + +.+.+. ......|..
T Consensus 198 ~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-- 275 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPA-- 275 (427)
T ss_pred cCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCC--
Confidence 48999999999999865 346555321 1 111100 011223443
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC----------------CccceEEEEEeccchHH
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKL 302 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~ 302 (359)
+++..++....+++.... ++++..+++..+.+.|++.|++. +..| ...+..+.|.+.. ...
T Consensus 276 ~~~~~A~l~~~~l~tL~~-r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~-~~~ 353 (427)
T PRK05994 276 ISPFNAFLILTGIETLPL-RMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG-GYE 353 (427)
T ss_pred CCHHHHHHHHcCcccHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC-CHH
Confidence 467777888888887665 88899999999999999987764 3222 1235567788864 223
Q ss_pred HHHHHHHHHHhcCceec----------cC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVM----------PE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~----------~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
...+|.+.|+--.+.+. |. ..+.||+++. + |+.+.+++.|++++++
T Consensus 354 ~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG--l--E~~~dli~dl~~Al~~ 426 (427)
T PRK05994 354 AGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIG--I--EDVDDIIADLEQALAK 426 (427)
T ss_pred HHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEec--c--CCHHHHHHHHHHHHhh
Confidence 55677777743332221 11 1346999985 3 5778888888887764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-25 Score=193.98 Aligned_cols=285 Identities=22% Similarity=0.235 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecc-ccccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN-GGISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+|+.++++.|.+.+++++||+.|+..++..++ ++||+|+++...|.++... .......|+++..++. .
T Consensus 68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~--- 142 (437)
T PRK05613 68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVEN-P--- 142 (437)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECC-C---
Confidence 68889999999999999999999999999998888887 5999999999998876420 0124567888888862 1
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
.|++++++.++ +++++|+++++.| |+|.+.| +++|+++|+++|+++|+|.+++.+.. ..++.
T Consensus 143 ~d~e~l~~~l~--------~~tk~V~~e~~~N-p~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~------~~p~~ 204 (437)
T PRK05613 143 DDPESWQAAVQ--------PNTKAFFGETFAN-PQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL------VRPLE 204 (437)
T ss_pred CCHHHHHHhCC--------ccCeEEEEECCCC-CCCcccC---HHHHHHHHHHcCCeEEEECCCccccc------cChHH
Confidence 18899999998 7899999876554 9998777 89999999999999999999755332 12223
Q ss_pred cCccEEEEeccccCCCc---eeeEEecCHHH-----------------------------------H-HHHHHHHHhhCC
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGSKEF-----------------------------------I-KKARRLRKTLGG 236 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~~~~-----------------------------------~-~~~~~~~~~~~~ 236 (359)
.++|++++|+||++++. .||+++.++.+ . +.........|.
T Consensus 205 ~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 284 (437)
T PRK05613 205 LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGA 284 (437)
T ss_pred hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCC
Confidence 38999999999999864 35766643220 0 011122233444
Q ss_pred CcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC----------------ccceEEEEEeccc
Q 018243 237 GMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA----------------VETNIVYFEITED 299 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~----------------~~~~~~~~~~~~~ 299 (359)
.. ++..++....+++...- ++++..+++..+.+.|++.|.+. +..|. ..+.++.|.+..
T Consensus 285 ~~--~p~~a~l~~rgl~TL~l-R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~- 360 (437)
T PRK05613 285 TL--SPFNAWVTAQGLDTLSL-RLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKG- 360 (437)
T ss_pred CC--CHHHHHHHHcccCcHHH-HHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecC-
Confidence 44 67777777888877655 88899999999999999987763 33221 135577888864
Q ss_pred hHHHHHHHHHHHHhcCcee----------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLEEHGVLV----------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~----------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
....+..|.+.|+-..+.. .|. .++.||+++. + |+.+++++.|.+++++
T Consensus 361 ~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvG--l--E~~~dLi~Dl~~Al~~ 436 (437)
T PRK05613 361 GKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVG--I--EDIDDIIADLEGGFAA 436 (437)
T ss_pred CHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEec--c--CCHHHHHHHHHHHHhh
Confidence 2235667777774322222 111 2356999985 3 5788888888888764
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=195.96 Aligned_cols=317 Identities=17% Similarity=0.166 Sum_probs=208.6
Q ss_pred HHHHHHHHcCC--CCCCccCC---Ch----HHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHH---hhhhcCC----e
Q 018243 18 EAMRAAMASAE--VDDDVLMH---DP----TAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLV---HCETRGS----E 80 (359)
Q Consensus 18 ~~~~~a~~~~~--~~~~~~~~---~~----~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~---~~~~~g~----~ 80 (359)
|.+.+++.+.. .+...|++ ++ ...++++.+++++|.+.. +..++|+.+...++.. ....+|+ +
T Consensus 84 p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~ 163 (481)
T PRK04366 84 PKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTE 163 (481)
T ss_pred HHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCE
Confidence 67777777652 22333422 23 335667778889998865 4446676666554332 2224555 8
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.+.|.+... .+...|++++.++.+.++.+|+++|++.++ +++++|++.+ +| |||.+ .++++
T Consensus 164 Vlv~~~~hp~~~~---~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~--------~~t~~V~v~~-Pn-~tG~~--~~dl~ 228 (481)
T PRK04366 164 VIVPDSAHGTNPA---SAAMAGFKVVEIPSNEDGLVDLEALKAAVG--------EDTAALMLTN-PN-TLGLF--ERNIL 228 (481)
T ss_pred EEEcCCccHhHHH---HHHHcCCEEEEeecCCCCCcCHHHHHhhcc--------cCCeEEEEeC-CC-Ccccc--chHHH
Confidence 9999999977664 367889999999887788999999999998 6888988855 55 89964 34699
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce------eeEEecCHHHHHHHHHH----
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV------GSVIVGSKEFIKKARRL---- 230 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~------gg~~~~~~~~~~~~~~~---- 230 (359)
+|.++|+++|+++++|+++..+..+. .+... .++|+++++.||+||+|. .|+++.++++.+++...
T Consensus 229 eI~~~a~~~gal~iVD~a~~~~~~g~--~~~~~--~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~ 304 (481)
T PRK04366 229 EIAEIVHEAGGLLYYDGANLNAILGK--ARPGD--MGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEK 304 (481)
T ss_pred HHHHHHHHcCCEEEEEecChhhhccc--CCccc--cCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeec
Confidence 99999999999999999985432221 12223 389999999999997663 26787887776664200
Q ss_pred -HHhhCC------------CcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 231 -RKTLGG------------GMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 231 -~~~~~~------------~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
...+.. .++.+...+.+++..+ .+.+++..++..+++++|++.|+++ +++.........+.
T Consensus 305 ~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~ 382 (481)
T PRK04366 305 DGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFV 382 (481)
T ss_pred cCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEE
Confidence 000000 0001112222222222 2333334566778899999999986 33322211112233
Q ss_pred EEec--cchHHHHHHHHHHHHhcCceec----cC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 294 FEIT--EDSKLYAACLLKKLEEHGVLVM----PE-SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 294 ~~~~--~~~~~~~~~~~~~l~~~gi~~~----~~-~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+... ...+.+..++.+.|.++||.+. |. ....+|++++..++++|+|++++.|+++.++...
T Consensus 383 ~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 383 LSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred EECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3321 1112467899999999999863 22 2568999999999999999999999999887654
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=190.55 Aligned_cols=289 Identities=14% Similarity=0.163 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeecCCC
Q 018243 39 TAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD 113 (359)
Q Consensus 39 ~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 113 (359)
...++.+.+++++|.+. ++++++||+++..++..... .+++.|++++..|++..+ + +...|.+.+.++..++
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~k-a--~~~lg~~~~~V~~~~~ 142 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSK-I--ARLLRIKSRVITSLPN 142 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHH-H--HHHcCCCCceeccCCC
Confidence 44677777899999862 37888999999988876642 367889999999999876 3 5667888888887788
Q ss_pred CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC---cEEEEecccccchhhhcCc-
Q 018243 114 GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG---LKLHIDGARIFNAAVALGV- 189 (359)
Q Consensus 114 ~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~---~~li~D~a~~~~~~~~~~~- 189 (359)
+.+|+++|++.+++. +.++.+|++ +..+|++|.+-| +++|.++|+++| +++++|.|++.+..+....
T Consensus 143 g~id~~~L~~~i~~~-----~~~t~lvv~-t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~ 213 (380)
T PRK02769 143 GEIDYDDLISKIKEN-----KNQPPIIFA-NIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP 213 (380)
T ss_pred CcCcHHHHHHHHHhC-----CCCcEEEEE-EeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCcc
Confidence 999999999999842 135778877 556669999877 899999999998 6999999987655542211
Q ss_pred hhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCC-----CcchhHHHHHHHHHHH----HHhHHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGG-----GMRQVGVLCAAALVAL----QENVLVM 259 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l----~~~~~~~ 259 (359)
...++..++|.+++|.||++++|.| |+++.+++..+.+.....+... ..+.++......+.++ ....++.
T Consensus 214 ~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~ 293 (380)
T PRK02769 214 PPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQR 293 (380)
T ss_pred ccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHH
Confidence 1122223799999999999998988 8888877666554211111110 0011222233333333 3445557
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHH
Q 018243 260 LDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339 (359)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i 339 (359)
.++..++++++.+.|++. |+++...| ..+.+.|..+. + ++. +|..+.+. +..+|+++.+.++++.+
T Consensus 294 ~~~~~~la~~l~~~L~~~-g~~~~~~p-~~~~v~f~~~~----~--~~~-----~~w~l~~~-~~~~hi~~~~~~~~~~~ 359 (380)
T PRK02769 294 VQHCLDMAQYAVDRLQAN-GIPAWRNP-NSITVVFPCPS----E--RIW-----KKWHLATS-GNQAHIITMPHHNKQQI 359 (380)
T ss_pred HHHHHHHHHHHHHHHHhC-CCEEEcCC-CceEEEEcCCC----H--HHH-----hCeeEccc-CCEEEEEECCCCCHHHH
Confidence 788889999999999987 99886544 67777776544 1 221 56666544 35899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 340 HYTLSCFQKIYAGV 353 (359)
Q Consensus 340 ~~~~~~l~~~~~~~ 353 (359)
|.+++.|...+...
T Consensus 360 ~~f~~dl~~~~~~~ 373 (380)
T PRK02769 360 DSLIDELIFDLKNP 373 (380)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998877643
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=185.14 Aligned_cols=339 Identities=17% Similarity=0.172 Sum_probs=227.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
..+|||.++ ++...||.+.+++.+.... ...|..++...++-+.+.+.+.. +..++++||++|+..+++
T Consensus 56 ~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiK 135 (447)
T COG0160 56 NEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIK 135 (447)
T ss_pred CEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHH
Confidence 367999995 4456669999999884432 22344457778888888888865 346899999999999999
Q ss_pred HhhhhcC-CeEE-ecCCCcceeeccccccccCCc-------------cceeeecCCCC--C----------CCHHHHHHH
Q 018243 72 VHCETRG-SEVI-LGDNSHIHIYENGGISTIGGV-------------HPRTVKNNQDG--T----------MDIDLIEAA 124 (359)
Q Consensus 72 ~~~~~~g-~~vl-~~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~--~----------~~~~~l~~~ 124 (359)
.+....| ..|+ .....|..++. + ..+.+. .++.+|.+..+ . -..+.+++.
T Consensus 136 iAr~~Tgr~~viaf~~afHG~T~g--a-lslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~ 212 (447)
T COG0160 136 IARAYTGRPGVIAFDGAFHGRTLG--A-LSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERA 212 (447)
T ss_pred HHHHHhCCCcEEEECCcccccchh--h-HHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHH
Confidence 9875444 3355 55555554432 1 121111 13333333221 1 123345554
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEE
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSAS 202 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~ 202 (359)
+... .....+++++++++..+..+-.+.|.++++++.++|++||+++|+||+|...+.. |.. +..+.-.+|++
T Consensus 213 i~~~--~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRT--G~~fa~E~~gv~PDiv- 287 (447)
T COG0160 213 LFDL--EVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRT--GKMFAFEHFGVEPDIV- 287 (447)
T ss_pred HHhh--cCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc--ccchhhhhcCCCCCEE-
Confidence 5432 1222579999999999954444567799999999999999999999999655443 321 12222246666
Q ss_pred EeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-CC
Q 018243 203 VCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL-KG 279 (359)
Q Consensus 203 ~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~-~g 279 (359)
+++|.+|+... +.++.++++.+. ....+++++..+++.++++...++...+ ...++..+..++|++.|.++ ..
T Consensus 288 -t~aK~ig~G~Pl~avv~r~ei~~~---~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~ 363 (447)
T COG0160 288 -TLAKSLGGGLPLSAVVGRAEIMDW---PPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEK 363 (447)
T ss_pred -EecccccCCCceeEEeccHHhccc---CCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhh
Confidence 55577765332 557888888773 3344555566778888888888874443 46667777888888888764 11
Q ss_pred ceEec-CCccceEEEEEecc------chHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 280 LRVDV-DAVETNIVYFEITE------DSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..... -+..+.++.+.+.. +.....+.+.+.+.++|+.+...+ .+.+||.+...++++++|+++++|.+++
T Consensus 364 ~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al 443 (447)
T COG0160 364 HPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEAL 443 (447)
T ss_pred cCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 11111 13456677776653 233567899999999999987777 7899999999999999999999999998
Q ss_pred HHH
Q 018243 351 AGV 353 (359)
Q Consensus 351 ~~~ 353 (359)
+++
T Consensus 444 ~~~ 446 (447)
T COG0160 444 KEA 446 (447)
T ss_pred Hhh
Confidence 865
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=183.54 Aligned_cols=285 Identities=23% Similarity=0.216 Sum_probs=215.3
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....+|+.++++-|.+.++.++||..|+..++..++ ++||+|++++..|.+++.-. .+.+..|+++.+++..
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~---- 136 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG---- 136 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC----
Confidence 78889999999999999999999999999999999998 59999999999888776411 2345688888888654
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+.+.+++.+.. +++++|++++|.| |+-.+.+ +.+|+++|+++|+++|+|++. ..+....++.
T Consensus 137 -~~~~~~~~~~~-------~~tk~v~lEtPsN-P~l~v~D---I~~i~~~A~~~g~~vvVDNTf------atP~~q~PL~ 198 (396)
T COG0626 137 -DDEALEAAIKE-------PNTKLVFLETPSN-PLLEVPD---IPAIARLAKAYGALVVVDNTF------ATPVLQRPLE 198 (396)
T ss_pred -ChHHHHHHhcc-------cCceEEEEeCCCC-ccccccc---HHHHHHHHHhcCCEEEEECCc------ccccccChhh
Confidence 66677777773 4899999998887 9988766 999999999999999999982 1233455566
Q ss_pred cCccEEEEeccccCCCc---eeeEEecC-HHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGS-KEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
.++|+++.|.+|++++- .+|+++++ +++.+.+..... ..|... ++..++..+.+++...- ++++..+++..+
T Consensus 199 ~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l--~p~dA~l~lRGlkTL~~-Rm~~~~~nA~~I 275 (396)
T COG0626 199 LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVL--SPFDAWLLLRGLRTLAL-RMERHNENALKI 275 (396)
T ss_pred cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCC--CHHHHHHHHhccchHHH-HHHHHHHHHHHH
Confidence 68999999999999863 45766654 555555433333 466655 66777777888887665 889999999999
Q ss_pred HHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-------------
Q 018243 271 AEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------- 321 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------- 321 (359)
.++|++.|.++ +..|. ..+..+.|.+... ....+|.+.|+-..+....|
T Consensus 276 A~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~t 353 (396)
T COG0626 276 AEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--EAAKKFLDSLKLFKLAESLGGVESLISHPATMT 353 (396)
T ss_pred HHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--HHHHHHHHhCCccEEeccCCCcccccccccccC
Confidence 99999988775 44442 3567788888872 35667777765433322111
Q ss_pred --------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 --------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 --------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++-+|+++. -|+++.+++-|+++++++
T Consensus 354 h~~~~~~~r~~~Gi~~~LvRlSVG----lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 354 HASIPLEERAKAGITDGLVRLSVG----LEDVEDLIADLEQALAKA 395 (396)
T ss_pred cccCCHhHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHHhh
Confidence 2456999985 368888888888887764
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=189.96 Aligned_cols=311 Identities=20% Similarity=0.185 Sum_probs=208.0
Q ss_pred ccCCChHHHHHHHH----HHHHhCCCC---------eEEcCCchHHHHHHHHHhhhh----------cCCeEEecCCCcc
Q 018243 33 VLMHDPTAFRLETE----MAKVMGKEA---------GLFVPSGTMGNLISVLVHCET----------RGSEVILGDNSHI 89 (359)
Q Consensus 33 ~~~~~~~~~~l~~~----la~~~~~~~---------~~~~~~gt~a~~~~l~~~~~~----------~g~~vl~~~~~~~ 89 (359)
.+..+|...++|+. +++++|.+. ++++++||+|++.++.++..+ +.-.|++++.+|+
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 34456666666655 556677763 488999999999999987642 1124667899999
Q ss_pred eeeccccccccCCc---cceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 90 HIYENGGISTIGGV---HPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 90 ~~~~~~~~~~~~g~---~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
+..+ + +.+.|+ .++.|+.+ .++.+|++.|+++|++.... ...-++++.+...+.||.+= ++++|.+
T Consensus 241 Sv~K-A--a~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~---g~~P~~VvaTaGTT~tGaiD---pl~~Ia~ 311 (539)
T PLN02590 241 SFRK-A--CLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAK---GFIPFFICATVGTTSSAAVD---PLVPLGN 311 (539)
T ss_pred HHHH-H--HHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhc---CCCcEEEEEEeCCCCCcccC---CHHHHHH
Confidence 9776 3 566665 57777776 45789999999999742211 12234444477777788864 4999999
Q ss_pred HHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCcee-eEEec-CHH-HHHHHHHHHHhh----
Q 018243 165 IAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVG-SVIVG-SKE-FIKKARRLRKTL---- 234 (359)
Q Consensus 165 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~-~~~~~~~~~~~~---- 234 (359)
+|++||+|++||+|++..... ......+ ...+|.+++.+|||++.|.+ |+++. ++. +.+.+.....+.
T Consensus 312 i~~~~g~WlHVDaA~GG~al~--~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~ 389 (539)
T PLN02590 312 IAKKYGIWLHVDAAYAGNACI--CPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKV 389 (539)
T ss_pred HHHHhCCeEEEecchhhhhhc--ChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcc
Confidence 999999999999996443332 2222222 24689999999999998877 55554 432 323222111111
Q ss_pred ------------CCC--cchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc
Q 018243 235 ------------GGG--MRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 235 ------------~~~--~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
+.. -+...+-.+..+..+ .+...+.+++..++++++.+.|++.|+|++..+ ...++++|++.++
T Consensus 390 ~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~-~~l~iVcFr~~~~ 468 (539)
T PLN02590 390 SKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT-RYFSLVCFRLAPV 468 (539)
T ss_pred cccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceEEEEEEecCC
Confidence 111 111122222233333 344555888899999999999999999998654 4778888887541
Q ss_pred --h----HHHHHHHHHHHHhcCceecc----CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 300 --S----KLYAACLLKKLEEHGVLVMP----ESSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 300 --~----~~~~~~~~~~l~~~gi~~~~----~~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
. .....++.++|.+.|..... .+..+||+++ ++..++++++.+++.|.+...++.+
T Consensus 469 ~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 469 DGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 0 11235677777667776522 3567899985 7778899999999999998877754
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-24 Score=187.97 Aligned_cols=334 Identities=16% Similarity=0.145 Sum_probs=218.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCC-CCeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGK-EAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~-~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.++ +....+|.+.+++.+.......+ ..++...++.+.+++..+. +...+++||++|+..|++.+.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr 119 (408)
T PRK04612 40 REYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVR 119 (408)
T ss_pred CEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHH
Confidence 467899877 34555699999888755432111 1245566777888877643 456899999999999999887
Q ss_pred hh---c-----CCeEEecCCC-cceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 75 ET---R-----GSEVILGDNS-HIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 75 ~~---~-----g~~vl~~~~~-~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
.- . ..+|+....+ |..+.. + ....+.. +..++. .|.+.+++.++.
T Consensus 120 ~~~~~~g~~~~r~~ii~~~~~yHG~t~~--~-~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~------ 185 (408)
T PRK04612 120 KWASSQGRPADKRVIVTFRGSFHGRTLA--A-VTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMAG------ 185 (408)
T ss_pred HHHHhhCCCCCCcEEEEECCCcCCccHH--H-HHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhCC------
Confidence 42 1 2356655554 443321 1 1111100 111222 278889888863
Q ss_pred CCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc
Q 018243 134 YPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~ 212 (359)
.++.+|++++..+ .+|... +.+++++|+++|++||+++|+||+|.. ++..+........+....+.+++|.++++
T Consensus 186 -~~~aavi~eP~~~-~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 186 -GDVAAVMLEPIQG-EGGVMPAAPGFLARVRALCDQHDALLVLDEIQCG--MGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred -CCEEEEEECCccC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 5788888877655 344443 357999999999999999999999753 32334322222223344456778999643
Q ss_pred ee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC-CceEe-cCCcc
Q 018243 213 VG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK-GLRVD-VDAVE 288 (359)
Q Consensus 213 ~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~-g~~~~-~~~~~ 288 (359)
.. |+++.++++.+.+... ..+.++..++..++++...++...+ +..++..++.+++++.|+++. .+.+. .....
T Consensus 262 ~piga~~~~~~~~~~~~~~--~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~ 339 (408)
T PRK04612 262 FPIGAMLAGPKVAETMQFG--AHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGR 339 (408)
T ss_pred CceEEEEECHHHHhhhcCC--CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecc
Confidence 22 5566777777765432 2344455567777788877765433 356667777888888887641 11111 11345
Q ss_pred ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+.++.+.+..+....+..+.+.|.++|+.+.+.+...+|+.++..++++++++++++|+++++++.++
T Consensus 340 Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~~~ 407 (408)
T PRK04612 340 GLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALADYVAQ 407 (408)
T ss_pred ceEEEEEecCchhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666431112467888899999999988877899999999999999999999999999887653
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=191.14 Aligned_cols=245 Identities=19% Similarity=0.201 Sum_probs=178.9
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|...++++.+++++|.+.+++++||+.|+..++. ++ ++||+|+++++.|.+.+... ..++..|++++.++..
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 126 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT---- 126 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC----
Confidence 67789999999999999989999999999887775 55 58999999999987655311 1245578888888764
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|+++++.| |||.+.+ +++|.++|+++|+++|+|++++.+.. ..+ +.
T Consensus 127 -d~~~l~~~l~--------~~tklV~l~~p~N-ptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~---~~~---~~ 187 (390)
T PRK08064 127 -NLEEVAQNIK--------PNTKLFYVETPSN-PLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLL---QKP---LD 187 (390)
T ss_pred -CHHHHHHhcC--------CCceEEEEECCCC-CCcEecc---HHHHHHHHHHcCCEEEEECCCCcccc---cCc---hh
Confidence 7899999988 7899999976555 9999987 89999999999999999999643221 111 22
Q ss_pred cCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|+||+++++. +|+++. ++++.+.++.....++... ++..++.....++... .++++..+++..+.
T Consensus 188 ~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~--~~~~a~l~~~gl~tl~-~R~~~~~~~a~~la 264 (390)
T PRK08064 188 LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVL--GVQDCWLVLRGLKTLH-VRLEHSSETANKIA 264 (390)
T ss_pred hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHcccCcHH-HHHHHHHHHHHHHH
Confidence 378999999999997654 375555 6788888887777666554 4444455555555543 37888889999999
Q ss_pred HHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHH
Q 018243 272 EGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
+.|++.|.+. +..+ ...+.++.|.+.. ..+...|.+.|
T Consensus 265 ~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l 318 (390)
T PRK08064 265 LYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--EEAVRQFVSHV 318 (390)
T ss_pred HHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhC
Confidence 9999875442 2221 1346678888854 12344444444
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=192.82 Aligned_cols=339 Identities=18% Similarity=0.137 Sum_probs=218.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--c--cCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--V--LMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +....+|++.+++.+...... . ....+...++.+.+++.++ .+...+++||++|+..|++.
T Consensus 42 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~kl 121 (423)
T PRK05964 42 RELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKM 121 (423)
T ss_pred CEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 357899876 445556999988887654321 1 1235666788888888874 45678999999999999998
Q ss_pred hhhh------c-CCeEEecCCCcceeeccccccccCCc------------cceeeecCCC--CCCCHHHHHHHhcCCCCC
Q 018243 73 HCET------R-GSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQD--GTMDIDLIEAAIRDPKGE 131 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~--~~~~~~~l~~~l~~~~~~ 131 (359)
++.- + ..+|+..+.+|..... +. ....+- ....++.+.+ ...+++.+++.+++..
T Consensus 122 ar~~~~~~~~~~r~~ii~~~~~yHG~t~-~~-ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~-- 197 (423)
T PRK05964 122 ALQYWRNRGEPGRSRFLSLRGGYHGDTI-GT-MSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHA-- 197 (423)
T ss_pred HHHHHHhcCCCCCcEEEEEcCCcCCccH-HH-HhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCC--
Confidence 8642 2 2356655554433221 11 111110 1122222211 1112778888886321
Q ss_pred ccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~ 208 (359)
.++.+|++++.....+|... +.+++++|.++|++||+++|+||+|... +..|... ......+|++ +++|+
T Consensus 198 ---~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~--gr~G~~~a~~~~~v~pDi~--~~~K~ 270 (423)
T PRK05964 198 ---GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGF--GRTGTLFACEQAGVSPDIM--CLSKG 270 (423)
T ss_pred ---CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC--CcCcchhHHHhcCCCCCee--eeehh
Confidence 57889999884333566654 7899999999999999999999998422 2223221 1122245655 55699
Q ss_pred CCCc-ee-eEEecCHHHHHHHHHH----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCce
Q 018243 209 LGAP-VG-SVIVGSKEFIKKARRL----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 209 ~g~~-~g-g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
++++ .. |+++.++++.+.+... ....+.++..+++.++++..+++...+ +..++..++.+++++.|+++....
T Consensus 271 l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~ 350 (423)
T PRK05964 271 LTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLP 350 (423)
T ss_pred hhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCC
Confidence 9654 22 6688899998886421 112344555567777777777764332 366777788888888887653222
Q ss_pred Ee-cCCccceEEEEEeccchH-HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 282 VD-VDAVETNIVYFEITEDSK-LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 282 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.. .....+.++.+.+..+.. .....+.+.|.++||.+.+.+ +.+|++++..++++|+|+++++++++++++
T Consensus 351 ~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 351 GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred CeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 11 113356666677754210 135688899999999997754 689999999999999999999999998763
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=183.52 Aligned_cols=312 Identities=20% Similarity=0.192 Sum_probs=200.5
Q ss_pred HHHHHHHHHcCCCCC--------CccCCChHHHHHH----HHHHHHhCCC----Ce-EEcCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVDD--------DVLMHDPTAFRLE----TEMAKVMGKE----AG-LFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~l~----~~la~~~~~~----~~-~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
+|.+++++.....+. ..|+..+..+++| ++++++|+.+ .+ +-..||+.|+..++.+++ +|||
T Consensus 33 Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl-~pGD 111 (399)
T PF00464_consen 33 SPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL-KPGD 111 (399)
T ss_dssp -HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT--TT-
T ss_pred CHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH-hhcC
Confidence 477888876643321 2455566665544 5577889998 54 778899999999999999 6999
Q ss_pred eEEecCCCcceeecccccccc-----C--CccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 80 EVILGDNSHIHIYENGGISTI-----G--GVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~-----~--g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+|+..+..|+.....+..... . ..+.+.++.+ +++.+|.+++++.+++ .++++|++.. .++|
T Consensus 112 ~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~-------~kPklIi~G~-S~y~-- 181 (399)
T PF00464_consen 112 TIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE-------HKPKLIICGA-SSYP-- 181 (399)
T ss_dssp EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH-------H--SEEEEE--SSTS--
T ss_pred cEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh-------cCCCEEEECc-hhcc--
Confidence 999877776655432322222 2 2345566666 6789999999999996 6899999943 3323
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC-----------
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS----------- 220 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~----------- 220 (359)
..+ ++++++++|++.|+++++|.+|..|... .+.-..++. .+|+++.|.||+|.+|.||+++.+
T Consensus 182 ~~~---d~~~~reIad~vga~l~~D~sH~~GLIa-~g~~~~P~~-~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~ 256 (399)
T PF00464_consen 182 RPI---DFKRFREIADEVGAYLMADISHIAGLIA-GGLFPNPFP-YADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGK 256 (399)
T ss_dssp S------HHHHHHHHHHTT-EEEEE-TTTHHHHH-TTSS--GCC-TSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-
T ss_pred Ccc---CHHHHHHHHHhcCcEEEeccccccccee-hheecCccc-cceEEEeeccccccccCceEEEEcCCccccCCccc
Confidence 333 4799999999999999999999777664 344445554 699999999999999999999988
Q ss_pred ---HHHHHHHHHHHHhhCCCcchhHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 221 ---KEFIKKARRLRKTLGGGMRQVGVLCAAA---LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
+++.+++.........+......+++.+ ..++....++..++..++++.|.+.|.+. |+.+.........+++
T Consensus 257 ~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlv 335 (399)
T PF00464_consen 257 EIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLV 335 (399)
T ss_dssp EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEE
T ss_pred ccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEE
Confidence 7788877643322111111122222222 22222223447888999999999999999 9999876778888999
Q ss_pred EeccchHHHHHHHHHHHHhcCcee----ccCC-----CcEEEEEe----CCCCCHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLV----MPES-----STRVRIVV----HHQISANDVHYTLSCF 346 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~----~~~~-----~~~lRi~~----~~~~~~~~i~~~~~~l 346 (359)
.+.. .+.++.+..+.|.+.||.+ .|+. ...|||.. ..++.++|++++.+.|
T Consensus 336 d~~~-~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 336 DLRS-FGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp EGGG-GTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred Eecc-cccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 9876 4568888889999999988 3432 45799974 3467788888887654
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-24 Score=191.62 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=202.1
Q ss_pred cCCChHHHHHHHH----HHHHhCCCC---------eEEcCCchHHHHHHHHHhhhh----------cCCeEEecCCCcce
Q 018243 34 LMHDPTAFRLETE----MAKVMGKEA---------GLFVPSGTMGNLISVLVHCET----------RGSEVILGDNSHIH 90 (359)
Q Consensus 34 ~~~~~~~~~l~~~----la~~~~~~~---------~~~~~~gt~a~~~~l~~~~~~----------~g~~vl~~~~~~~~ 90 (359)
+..+|...++|+. +++++|.+. ++++++||+|++.++..++.+ +.-.|++++.+|++
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 4445655555555 666677763 588999999999999988642 11246679999999
Q ss_pred eeccccccccCCc---cceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 91 IYENGGISTIGGV---HPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 91 ~~~~~~~~~~~g~---~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
..+ + +...|+ .++.|+.+. ++.+|++.|++.|++.... ...-++++.+...+.||.+-| +++|.++
T Consensus 194 v~K-a--a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~---g~~p~~vvataGTT~~GaiDp---l~eI~~i 264 (490)
T PLN02880 194 LQK-A--CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSS---GLIPFFLCATVGTTSSTAVDP---LLELGKI 264 (490)
T ss_pred HHH-H--HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHC---CCccEEEEEecCCCcCcccCc---HHHHHHH
Confidence 887 3 666666 366777753 6789999999999742211 122344444777778898766 8999999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCcee-eEEecC-HHH-HHHHHHHHHhhC----
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVG-SVIVGS-KEF-IKKARRLRKTLG---- 235 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~g-g~~~~~-~~~-~~~~~~~~~~~~---- 235 (359)
|++||+|+|||+||+.+... ....... ...+|.+++++|||++.|.+ |+++.+ +.. .+.+.....+..
T Consensus 265 ~~~~~iwlHVDaA~gg~~~~--~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~ 342 (490)
T PLN02880 265 AKSNGMWFHVDAAYAGSACI--CPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKAS 342 (490)
T ss_pred HHHcCCEEEEehhhHHHHHh--CHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccc
Confidence 99999999999997554433 1111111 24789999999999999988 666654 222 222211111100
Q ss_pred --------------CCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 236 --------------GGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 236 --------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
.+.+...+-.++.+..+ .+...++.++..++++++.+.|++.|++++..+ ...++++|++++..
T Consensus 343 ~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~-~~~~iv~Fr~~~~~ 421 (490)
T PLN02880 343 QANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP-RIFSLVCFRLVPPK 421 (490)
T ss_pred cccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEEEEEeCCC
Confidence 00000112222222222 233444677777999999999999999998654 46778888876420
Q ss_pred ------HHHHHHHHHHHHhcCcee-c---cCCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 301 ------KLYAACLLKKLEEHGVLV-M---PESSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 301 ------~~~~~~~~~~l~~~gi~~-~---~~~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
..-..++.++|.+.|-.. . -.+..++|+++ .+..++++++.+++.|.+..+++..+
T Consensus 422 ~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 011235666665455443 2 23577899996 44556799999999999998887653
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=194.70 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCC
Q 018243 40 AFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTM 116 (359)
Q Consensus 40 ~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~ 116 (359)
..++++.+++++|.+.. +++++|++++..++.++...++++|+++++.|.+..... ..+...|++++.++.+++ .+
T Consensus 114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~ 192 (447)
T PRK00451 114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VT 192 (447)
T ss_pred HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CC
Confidence 34555778999998743 567777777767666664358899999999987765411 012236889999988777 89
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEE--ecccccchhhhcCchhHhh
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHI--DGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~--D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++ |+||.+.+ +++|.++|+++|+++++ |.+ ..+... ...
T Consensus 193 d~~~l~~~i~--------~~t~~v~l~~p--n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~-~~g~~~----~~~-- 252 (447)
T PRK00451 193 DLEALEAAVD--------DDTAAVVVQYP--NFFGVIED---LEEIAEIAHAGGALFIVGVDPV-SLGLLK----PPG-- 252 (447)
T ss_pred CHHHHHHhcC--------CCeEEEEEECC--CCCCeeCC---HHHHHHHHHHCCCEEEEEcChH-HhccCC----Ccc--
Confidence 9999999998 78999999765 58999866 89999999999999998 543 122111 111
Q ss_pred hcCccEEEEecccc-----CCCceeeEEecCHHHHHHHHH-------------------------HHH-hhCCCcchh-H
Q 018243 195 VQAADSASVCLSKG-----LGAPVGSVIVGSKEFIKKARR-------------------------LRK-TLGGGMRQV-G 242 (359)
Q Consensus 195 ~~~~d~~~~s~~K~-----~g~~~gg~~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~~-~ 242 (359)
..++|+++.|.+|+ +++|..|+++.++++.+.+.. .+. ....+.... .
T Consensus 253 ~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (447)
T PRK00451 253 EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQA 332 (447)
T ss_pred cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHH
Confidence 23789998876775 565655888888888776310 000 001111111 1
Q ss_pred HHHHHH---HHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE--EEEeccchHHHHHHHHHHHHhcCc
Q 018243 243 VLCAAA---LVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV--YFEITEDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 243 ~~~~~~---~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~gi 316 (359)
....++ +..+ +...++..+++.++++++.+.|++++++++. . ...+. .+.++. +..++.++|.++||
T Consensus 333 ~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~--~~~~~~~~v~~~~----~~~~~~~~L~~~gi 405 (447)
T PRK00451 333 LNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-D--GPFFNEFVVRLPK----PAEEVNEALLEKGI 405 (447)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-C--CCeEEEEEEecCC----CHHHHHHHHHhcCC
Confidence 111112 1222 3455667788999999999999999888874 2 22332 244432 46789999988888
Q ss_pred ee-c------cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 317 LV-M------PESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 317 ~~-~------~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+ . +....++|++++..+++++++++++.|++++
T Consensus 406 ~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 406 LGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 64 1 1223589999998899999999999998764
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=188.79 Aligned_cols=323 Identities=13% Similarity=0.042 Sum_probs=214.8
Q ss_pred ccccccccCCCCCChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC---eEEcC-CchHHHHHHHHHhhh
Q 018243 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA---GLFVP-SGTMGNLISVLVHCE 75 (359)
Q Consensus 2 ~~~~id~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~-~gt~a~~~~l~~~~~ 75 (359)
++..+.|..+....++..+++++.+...+ +..........+.++.++++++.+. .++++ |||.++..++..++
T Consensus 10 ~~~~~~f~~Gp~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~- 88 (378)
T PRK03080 10 RPADPRFSSGPCKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL- 88 (378)
T ss_pred CCCCCCcCCCCcCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC-
Confidence 34456676665555544499999875443 2222224556888999999999742 45565 89999999999887
Q ss_pred hcCCeEEecCCCcceeecccc-ccccCCc-cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 76 TRGSEVILGDNSHIHIYENGG-ISTIGGV-HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~-~~~~~g~-~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
++++.+++....|...+. . ..+..|. ++..++.+.++.+|+++ ++ . ++.|.+++..+ .||..
T Consensus 89 ~~~~~~vi~~g~f~~~~~--~~~~~~~g~~~v~~~~~~~g~~~d~~~----i~--------~-~~~V~~~h~~t-~tG~~ 152 (378)
T PRK03080 89 GARRVDHLAWESFGSKWA--TDVVKQLKLEDPRVLEADYGSLPDLSA----VD--------F-DRDVVFTWNGT-TTGVR 152 (378)
T ss_pred CCCcceEEEeCHHHHHHH--HHHHhhcCCCCceEeccCCCCCCCHhh----cC--------C-CCCEEEEecCC-cccee
Confidence 344444455667666554 2 2355688 88888766666677665 33 2 34577755444 89999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~ 232 (359)
.| +++|++ +++|+++++|.+|++|... ..+. ..|++++|.+||+++|.| |+++.+++..+++.....
T Consensus 153 ~p---i~~I~~--~~~g~~~vVDa~qs~G~~p---idv~----~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~ 220 (378)
T PRK03080 153 VP---VARWIG--ADREGLTICDATSAAFALP---LDWS----KLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTP 220 (378)
T ss_pred cc---chhhcc--ccCCCeEEEecccccccCC---CCHH----HCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccC
Confidence 98 677777 7899999999999887664 2222 269999999999998888 999999988877553210
Q ss_pred -------------------hh-CCCcchhHHHHH----HHHHHH-HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecC-
Q 018243 233 -------------------TL-GGGMRQVGVLCA----AALVAL-QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD- 285 (359)
Q Consensus 233 -------------------~~-~~~~~~~~~~~~----~~~~~l-~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~- 285 (359)
.+ +.+...++.... .++..+ +. ..+.+.++..++.+++++.|++++++.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~ 300 (378)
T PRK03080 221 ARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVAD 300 (378)
T ss_pred CCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 01 111111222221 122223 22 4555667788889999999999866665422
Q ss_pred C-ccc-eEEEEEeccc-hHHHHHHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 286 A-VET-NIVYFEITED-SKLYAACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 286 ~-~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+ ..+ .++.+.++.. .+.+. ++...|.++||.+..++ .+.+|++++.+++++|++.++++|++++++++
T Consensus 301 ~~~~s~~i~~~~~~~~~~~~~~-~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 301 PATRSNTSVTLDFVDAQAAVDA-AAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred ccccCccEEEEEcCCchHHHHH-HHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 223 4566666541 02233 46667766788775432 46799999999999999999999999988765
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=190.03 Aligned_cols=335 Identities=18% Similarity=0.187 Sum_probs=223.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+++||.++ +....+|++.+++.+...... .+...+...++.+.+++.+.. +.+.+++||++|+..+++.+
T Consensus 82 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklA 161 (459)
T PRK11522 82 QEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLA 161 (459)
T ss_pred CEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHH
Confidence 357899887 334555899988887554322 233467778888889888753 35688999999999999988
Q ss_pred hhhc---C-CeEEecCC-CcceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 74 CETR---G-SEVILGDN-SHIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 74 ~~~~---g-~~vl~~~~-~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
.... | .+|+.... +|..+.. . ....+.. +..++.+ |.+.+++.+++... +..+
T Consensus 162 r~~t~~~gr~~ii~~~~~yHG~t~~--~-ls~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~--~~~~ 231 (459)
T PRK11522 162 KAYQSPRGKFTFIATSGAFHGKSLG--A-LSATAKSTFRKPFMPLLPGFRHVPFG-----NIEAMRTALSECKK--TGDD 231 (459)
T ss_pred HHHhccCCCcEEEEecCCCCCCcHH--H-hhhcCCcccccCCCCCCCCCcccCCC-----CHHHHHHHHHHhhc--cCCc
Confidence 7533 2 24665554 4444322 1 2222211 1112222 77888888863211 1146
Q ss_pred eeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCC--
Q 018243 137 TRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGA-- 211 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~-- 211 (359)
+.+|++++...+ .|. ..|.+++++++++|++||+++|+||+|.. ++..|.. ...+.-.+|++ +++|.+|+
T Consensus 232 iAavIvEpv~g~-~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~gv~PDiv--t~gK~lggG~ 306 (459)
T PRK11522 232 VAAVILEPIQGE-GGVILPPEGYLTAVRKLCDEFGALLILDEVQTG--MGRTGKMFACEHENVQPDIL--CLAKALGGGV 306 (459)
T ss_pred EEEEEEecccCC-CCCccCCHHHHHHHHHHHHHcCCEEEeccceec--CCccchhhhhhccCCCCCEE--EechhhhCCC
Confidence 889999999885 456 45679999999999999999999999842 2223332 11122246765 66798864
Q ss_pred -ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecC
Q 018243 212 -PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVD 285 (359)
Q Consensus 212 -~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~ 285 (359)
|.|+++ .++++.+.+......++.++..+++.++++...++...+ +..++..++.++|++.|+++ |..-.. -
T Consensus 307 ~Pigav~-~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-V 384 (459)
T PRK11522 307 MPIGATI-ATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQE-A 384 (459)
T ss_pred ccceeEE-EcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceee-E
Confidence 555644 556776654321123455666677888888888865543 35667778888888888764 211111 1
Q ss_pred CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 286 AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
...+.++.+.+..+ .....+.+.|.++||.+.+. +...+|+.++..++++|+++++++|+++++++.+.
T Consensus 385 rG~Gl~~giel~~~--~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~ 455 (459)
T PRK11522 385 RGKGMLMAIEFVDN--EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVS 455 (459)
T ss_pred EeceeEEEEEecCc--hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 24677777877652 24667889999999998654 45789999999999999999999999999887654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=190.48 Aligned_cols=283 Identities=22% Similarity=0.242 Sum_probs=196.6
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|...++++.+++++|.+.+++++||+.|+..++.+++ ++|++|+++.+.|.+.+... ..+...|++++.++.+
T Consensus 55 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~--- 130 (418)
T TIGR01326 55 MNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD--- 130 (418)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC---
Confidence 357789999999999999889999999999999999888 59999999999876544200 2245678888888653
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++ +||+|.+.+ +++|.++|+++|+++|+|++++.+. . ..++
T Consensus 131 --d~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~---~---~~~l 190 (418)
T TIGR01326 131 --DPEEFEKAID--------ENTKAVFAETI-GNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPY---L---CRPI 190 (418)
T ss_pred --CHHHHHHhcC--------cCCeEEEEECC-CCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhh---c---CCch
Confidence 8999999998 68899999765 569999887 8999999999999999999975331 1 1223
Q ss_pred hcCccEEEEeccccCCCc---eeeEEecCHHHH-------------------------------HHHH-HHHHhhCCCcc
Q 018243 195 VQAADSASVCLSKGLGAP---VGSVIVGSKEFI-------------------------------KKAR-RLRKTLGGGMR 239 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~-------------------------------~~~~-~~~~~~~~~~~ 239 (359)
..++|+++.|++|+++++ .||+++.++.+. .+.+ ......|...
T Consensus 191 ~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~- 269 (418)
T TIGR01326 191 DHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAAL- 269 (418)
T ss_pred hcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCC-
Confidence 347899999999999864 345455332211 0111 1222334444
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecC----------------CccceEEEEEeccchHH
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKL 302 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~ 302 (359)
++..++.....++.... ++++..+++..+.+.|.+.|++. +..| ...+..+.|.+.. ...
T Consensus 270 -~p~~a~~~~~~l~tl~~-R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~-~~~ 346 (418)
T TIGR01326 270 -SPFNAFLLLQGLETLSL-RMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKG-GRE 346 (418)
T ss_pred -CHHHHHHHHCCcccHHH-HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecC-CHH
Confidence 45555555666655544 66777788899999999887664 2222 1245577788864 223
Q ss_pred HHHHHHHHHHhcCceeccC---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPE---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
...+|.+.|+--.+.+.-| .++.||+++. + |+.+++++.|.+++
T Consensus 347 ~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG--l--E~~~dl~~dl~~Al 417 (418)
T TIGR01326 347 AGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVG--I--ENIDDIIADLEQAL 417 (418)
T ss_pred HHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec--C--CCHHHHHHHHHHhh
Confidence 4667777774333321111 2346999995 3 57888888887765
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=181.68 Aligned_cols=314 Identities=16% Similarity=0.149 Sum_probs=211.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|++.+++.+....... ....+...++.+.++++.+.+..++++||++|+..+++.+..
T Consensus 24 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~ 103 (364)
T PRK04013 24 RRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARL 103 (364)
T ss_pred CEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHH
Confidence 357899876 3455568888888875543211 123566788999999998888889999999999999999886
Q ss_pred hcC-CeEEecCCCcceeeccccccccCC-------cc-----ceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 76 TRG-SEVILGDNSHIHIYENGGISTIGG-------VH-----PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 76 ~~g-~~vl~~~~~~~~~~~~~~~~~~~g-------~~-----~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
.+| ++|+..+.+|..... +. ....+ .. +..++.+ |.+.+++.++ +++++|++
T Consensus 104 ~~gr~~Ii~~~~syHG~t~-~~-ls~~~~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~--------~~~aAviv 168 (364)
T PRK04013 104 YTGRKEIIAMTNAFHGRTM-GA-LSATWKPKYREDFEPLVPGFKHIPFN-----DVEAAKEAIT--------KETAAVIF 168 (364)
T ss_pred HhCCCEEEEECCccccCch-hh-ccCCCCcccccCCCCCCCCcEEecCC-----CHHHHHHHhc--------CCcEEEEE
Confidence 566 677766665544432 11 22111 11 1122222 7888998887 68999999
Q ss_pred eccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCC--ceeeEE
Q 018243 143 ENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGA--PVGSVI 217 (359)
Q Consensus 143 ~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~--~~gg~~ 217 (359)
++...+ +|. ..|.++++++.++|++||+++|+||++.. .. .|.. ...+.-.+|++++ +|.+++ |.++++
T Consensus 169 Epi~g~-gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG-~R--tG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~ 242 (364)
T PRK04013 169 EPIQGE-GGIVPAKEEFVKTLRDLTEDVGALLIADEVQSG-LR--TGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTL 242 (364)
T ss_pred cCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhc-CC--CCchhHHHhcCCCCCEEEe--cccccCCceeEEEE
Confidence 998874 444 56679999999999999999999999853 22 2321 2222235676655 687743 455544
Q ss_pred ecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
.++++. ....++++..+++.++++...++...++ ...++.+...+.+.. |.+.- -...+.++-+.+.
T Consensus 243 -~~~~~~------~~~~~~T~~gnp~~~aaa~a~l~~i~~~---~l~~~~~~~l~~l~~-~~v~~--vRG~Gl~~gve~~ 309 (364)
T PRK04013 243 -TNFDVE------RGKHGSTFGGNPLACKAVAVTLRILRRE---RLVEKAGEKFIEIKG-ERVVT--TRGRGLMIGIVLK 309 (364)
T ss_pred -eccccc------CCCcCCCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHhcc-Cccee--eeeCcEEEEEEeC
Confidence 444431 1235566777788888888888765442 122222111122322 22221 1346677777776
Q ss_pred cchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. ....+.+.+.++|+.+.+.+.+.+|+.++..++++++++++++|+++++++.
T Consensus 310 ~----~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 310 K----PVGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred C----cHHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 5 2457888899999999887778999999999999999999999999998764
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=185.96 Aligned_cols=286 Identities=19% Similarity=0.204 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeecCC
Q 018243 38 PTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ 112 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 112 (359)
+...++++.+++++|.+. ++++++||+|++.++..+.. .++..|+++...|++..+ + ++..|..+..++.+.
T Consensus 66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~k-a--a~~lg~~~~~V~~d~ 142 (374)
T PLN03032 66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFK-A--ARMYRMEAVKVPTLP 142 (374)
T ss_pred HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHH-H--HHHcCCCCeEeeeCC
Confidence 445777788999999863 38999999999999987763 244589999999999887 3 677788888899899
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC-----cEEEEecccccchhhhc
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG-----LKLHIDGARIFNAAVAL 187 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~-----~~li~D~a~~~~~~~~~ 187 (359)
+|.+|+++|++.+++.. .++.+|++ +..+|++|.+-| +++|.++|+++| +++++|.|++.+..+..
T Consensus 143 ~g~id~~~L~~~i~~~~-----~~~~lvv~-tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~ 213 (374)
T PLN03032 143 SGEIDYDDLERALAKNR-----DKPAILNV-NIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFV 213 (374)
T ss_pred CCcCcHHHHHHHHHHcC-----CCCEEEEE-EecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhcc
Confidence 99999999999998410 24666666 567779999866 899999999996 58999999866555432
Q ss_pred C-chhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhC-----CCcchhHHHHHHHHHHH----HHhH
Q 018243 188 G-VPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLG-----GGMRQVGVLCAAALVAL----QENV 256 (359)
Q Consensus 188 ~-~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l----~~~~ 256 (359)
. .+..++...+|.+++|.||++|.|.| |+++.++...+.+.....+.. ...+.++...+..+..+ .+..
T Consensus 214 ~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~ 293 (374)
T PLN03032 214 SRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGI 293 (374)
T ss_pred CCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHH
Confidence 1 11112234689999999999988988 888887666554432112111 11111222233333333 3444
Q ss_pred HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCH
Q 018243 257 LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISA 336 (359)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~ 336 (359)
.+..++..++++++.+.|++. ++++...| ..+.+.|.-+.. +. +. +|..+.+. +..+|+++.+.+++
T Consensus 294 ~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p-~~~~V~f~~~~~-----~~----~~-~~w~l~~~-~~~~hi~vm~~~~~ 360 (374)
T PLN03032 294 KRDVQHCMRNAHYLKDRLTEA-GLTCRLNE-LSSTVVFERPMD-----EA----FI-KKWQLACE-GDIAHVVVMPNVTV 360 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcEEECC-CceEEEEcCCCc-----Hh----Hh-heeeeccc-CCEEEEEECCCCCH
Confidence 458888999999999999997 88875544 566666665531 11 22 46666443 35899999988999
Q ss_pred HHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQK 348 (359)
Q Consensus 337 ~~i~~~~~~l~~ 348 (359)
+.+|++++.|++
T Consensus 361 ~~id~fi~dl~~ 372 (374)
T PLN03032 361 EKLDEFVEELVE 372 (374)
T ss_pred HHHHHHHHHHhc
Confidence 999999988864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=191.74 Aligned_cols=330 Identities=17% Similarity=0.153 Sum_probs=212.6
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHhCC-CCeEEcCCchHHHHHHHHHhhh-
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMGK-EAGLFVPSGTMGNLISVLVHCE- 75 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~-~~~~~~~~gt~a~~~~l~~~~~- 75 (359)
.+++||.++. ....+|.+.+++.+.......|. .++...++.++|+++++. +..++++||++|+..+++.+..
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~ 127 (423)
T TIGR00713 48 NEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGY 127 (423)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHh
Confidence 3578998863 33556889988887654433333 567789999999998864 3568899999999999997653
Q ss_pred hcCCeEEecCCCcceeecccccccc--CCc-----------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTI--GGV-----------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~--~g~-----------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
..+++|+..+++|..... ..... .+. ..+.++.+ |++++++.+++.. .+
T Consensus 128 ~gr~~ii~~~~~yhG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~~-----~~ 195 (423)
T TIGR00713 128 TGRDKIIKFEGCYHGHHD--ALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN-----DLEALEEVFEEYG-----EE 195 (423)
T ss_pred hCCCEEEEEcCCCCCChh--hhhccccCcccccCCCCCCCCCcccccceEEeCCC-----CHHHHHHHHHHcC-----Cc
Confidence 234678888877655332 01110 110 11112221 7899999887421 46
Q ss_pred eeEEEEeccccCCCceecC-hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e
Q 018243 137 TRLICLENTHANCGGRCLS-VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g 214 (359)
+++|++++.++| +|.+.+ .+++++|+++|++||+++|+||+|... ..........+...+|+ .+++|.++.+. .
T Consensus 196 ~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi--~t~sK~l~~G~pi 271 (423)
T TIGR00713 196 IAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDL--TTLGKIIGGGLPV 271 (423)
T ss_pred EEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcch--hhhhhhhcCCCce
Confidence 889999988887 687777 599999999999999999999998432 21111111112224564 37899997432 3
Q ss_pred eEEecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhH-----HHHhhhHHHHHHHHHHHHhcCCCceEecCCcc
Q 018243 215 SVIVGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENV-----LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~ 288 (359)
|++++++++++.+.... ...+.++..+++.++++..+++... +...+...+.++.|.+.+++. ++..... ..
T Consensus 272 g~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~-~~ 349 (423)
T TIGR00713 272 GAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTVN-RV 349 (423)
T ss_pred eeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEE-ee
Confidence 77888989888865321 1233445566777777777775332 222333334445555555555 5543222 24
Q ss_pred ceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 289 ~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+.++.+.+..+ +......+.+.|.++||.+.+.+...+|+++ .++++++++++++|.+++++
T Consensus 350 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~--~~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 350 GSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSA--AHTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred ccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeEC--CCCHHHHHHHHHHHHHHHhh
Confidence 45544444311 0112346888888899998665545688877 48999999999999998865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=188.36 Aligned_cols=326 Identities=17% Similarity=0.221 Sum_probs=210.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ +....+|++.+++.+...... .....+...++.+.+++..+.+..++++||++|+..++..+..
T Consensus 36 ~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~ 115 (395)
T PRK03715 36 KRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARK 115 (395)
T ss_pred CEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 467999863 444556889888877543211 1112344455555555554456679999999999999998863
Q ss_pred h-----cC-CeEEe-cCCCcceeeccccccccCCcccee---eecCCC----CCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 76 T-----RG-SEVIL-GDNSHIHIYENGGISTIGGVHPRT---VKNNQD----GTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 76 ~-----~g-~~vl~-~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
. ++ .+|+. ....|.++.. + ....+..... .+.... ...|++.+++.++ +++++|+
T Consensus 116 ~~~~~~~~r~~ii~~~~~yHG~t~~--~-~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~aavi 184 (395)
T PRK03715 116 WGRKHKNGAYEIITFDHSFHGRTLA--T-MSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT--------DKTVAVM 184 (395)
T ss_pred HhhccCCCCcEEEEECCCcCCChHH--H-HhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC--------CCceEEE
Confidence 1 12 34554 4455655543 1 2333322110 011000 0137889998887 5788999
Q ss_pred EeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccCCC--ceeeE
Q 018243 142 LENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGLGA--PVGSV 216 (359)
Q Consensus 142 i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~g~--~~gg~ 216 (359)
+++..+ .+|.. .|.+++++++++|++||+++|+||+|.. ++..|... ..+...+|++ +++|.+|+ |.|+
T Consensus 185 ~Epv~~-~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG--~GRtG~~~a~~~~gv~PDi~--t~gK~lg~G~p~~a- 258 (395)
T PRK03715 185 LEPVQG-EGGVIPATREFMQQLRALTKQHGLLLIVDEVQTG--CGRTGTLFAYELSGIEPDIM--TLGKGIGGGVPLAA- 258 (395)
T ss_pred EeCCcC-CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCCCcchhhHhhcCCCCcee--eehhhhhCCcceEE-
Confidence 998877 56665 4679999999999999999999999862 33334322 1222256764 55699865 4445
Q ss_pred EecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCccceEE
Q 018243 217 IVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETNIV 292 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~~~ 292 (359)
+++++++... .....+.++..+++.++++..+++...+ +.+++..++.++|++.|+++ .++... ...+.++
T Consensus 259 v~~~~~i~~~---~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~v--rG~Glm~ 333 (395)
T PRK03715 259 LLAKAEVAVF---EAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEGE--RGEGLLR 333 (395)
T ss_pred EEEccccccc---cCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCCcCeE--EcceeEE
Confidence 4566666421 1123355556677788888888865543 36677778888888888764 133321 3467777
Q ss_pred EEEeccchHHHHHHHHHHHHhc---CceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEH---GVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~---gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.+..+ ....+.+.+.+. ||.+.+.....+|++++..++++++++++++|+++++++
T Consensus 334 ~i~l~~~---~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 334 ALLLGKD---IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEEecCc---hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 7777652 234555555555 999866566889999999999999999999999998765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=186.11 Aligned_cols=314 Identities=19% Similarity=0.158 Sum_probs=217.5
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCC-----eEEcCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEA-----GLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
++.+++++.....+ ..+|+..+..+++| ++..++|+.+. .+...||+.|+..++.+++ +|||
T Consensus 161 S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl-~PGD 239 (586)
T PLN02271 161 CRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL-LPGD 239 (586)
T ss_pred CHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc-CCCC
Confidence 47788887664433 23456666665554 45667888665 2667799999999999997 6999
Q ss_pred eEEecCCCcceeeccc------cccccCCccceee--ecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 80 EVILGDNSHIHIYENG------GISTIGGVHPRTV--KNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~------~~~~~~g~~~~~v--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
+|+..+..|.+....+ ..+...|..+..+ +.+ +++.+|.+++++...+ .++++|++....+ |
T Consensus 240 ~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~-------~rPKLII~g~Say-p- 310 (586)
T PLN02271 240 RIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD-------FRPKILICGGSSY-P- 310 (586)
T ss_pred EEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh-------cCCeEEEECchhc-c-
Confidence 9998777666654422 1124455444333 343 5688999999995554 7899999944333 5
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHH--------
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE-------- 222 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~-------- 222 (359)
..+| +++++++|+++|+++++|.+|..|..... ....++ .++|+++.|.||||.+|.||+++.+++
T Consensus 311 -r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g-~~~sP~-~~aDvvt~TTHKtLrGPrGG~I~~r~~~~~~~~g~ 384 (586)
T PLN02271 311 -REWD---YARFRQIADKCGAVLMCDMAHISGLVAAK-ECVNPF-DYCDIVTSTTHKSLRGPRGGIIFYRKGPKLRKQGM 384 (586)
T ss_pred -CcCC---HHHHHHHHHHcCCEEEEECcccccccccC-cCCCCC-cCCcEEEeCCcccCCCCCceEEEecccccccccCC
Confidence 4444 78999999999999999999988877522 212233 269999999999999899987877653
Q ss_pred ------------HHHHHHHHH-HhhCCCcchhHHHHHHHHHHH-----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 223 ------------FIKKARRLR-KTLGGGMRQVGVLCAAALVAL-----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 223 ------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
+.+++.... ..+-++.. ...++ +...++ .++ ....++..+|++.|.+.|.+. |+.+..
T Consensus 385 ~gs~s~~~~~~d~~~kI~~aVfPglqgGph-n~~IA-alAvalkea~~~ef-k~Ya~QVv~NAkaLA~~L~~~-G~~vv~ 460 (586)
T PLN02271 385 LLSHGDDNSHYDFEEKINFAVFPSLQGGPH-NNHIA-ALAIALKQVATPEY-KAYMQQVKKNAQALASALLRR-KCRLVT 460 (586)
T ss_pred ccccccccccHHHHHHhhcccCCccccChh-HHHHH-HHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHC-CCeEee
Confidence 333322111 11111111 11222 222223 233 347788889999999999999 999887
Q ss_pred CCccceEEEEEeccchHHHHHHHHHHHHhcCcee----ccC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHH
Q 018243 285 DAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----MPE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.......+++.+.. .+.++....+.|.+.||.+ .|+ .+.++||.. +.++.++|++++.+.|.++++
T Consensus 461 ggTdnHlvLvDl~~-~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 461 GGTDNHLLLWDLTT-LGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCcceeeecCcc-cCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 77777788888865 3457788888889999988 343 345799964 446778999999999999887
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=186.02 Aligned_cols=320 Identities=14% Similarity=0.143 Sum_probs=206.3
Q ss_pred cccccccCCC--C-CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC-CC--eEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDT--V-TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK-EA--GLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~--~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~--~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++. . .+.+|++.+++.+....... ..+....++++++++.+.. .. .++++||++|+..++..+...
T Consensus 29 ~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~ 107 (375)
T PRK04260 29 KKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWH-SPNLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKA 107 (375)
T ss_pred CEEEECCCCcccccCCCCHHHHHHHHHHHHhcCc-ccCccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHh
Confidence 3579998862 2 23379999999886543221 1223456777788876633 23 478899999999999987532
Q ss_pred -cCCeEEecC-CCcceeeccccccccCCc---------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 77 -RGSEVILGD-NSHIHIYENGGISTIGGV---------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 77 -~g~~vl~~~-~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
.+++|+..+ ..|.+.+. . ....+. .+..++.. . ..|++.+++.++ +++++|+++++
T Consensus 108 ~~~~~vv~~~~~yHg~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~dl~~l~~~l~--------~~~a~vi~e~v 174 (375)
T PRK04260 108 TGKQEIITFQNSFHGRTFG--S-MSATGQDKIKDGFGDGVPHFSYA-I-FNDLNSVKALVN--------KNTAAVMLELV 174 (375)
T ss_pred cCCCeEEEECCCcCcccHH--H-HhccCCcccCCCCCCCCCCeEEe-C-CCCHHHHHHhcC--------CCeEEEEECCe
Confidence 345666654 45655543 1 211111 11111110 0 138899998886 57889999877
Q ss_pred ccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCCCce-eeEEecCH
Q 018243 146 HANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLGAPV-GSVIVGSK 221 (359)
Q Consensus 146 ~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~~-gg~~~~~~ 221 (359)
.+ ++|... +.++++++.++|+++|+++|+||+|. + +...+.... .....+|++ |+||.++.+. .|++++++
T Consensus 175 ~~-~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g-~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~ 249 (375)
T PRK04260 175 QG-ESGVLPADKDFVKALADYCQETGILLIVDEVQT-G-MGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKS 249 (375)
T ss_pred EC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcH
Confidence 76 778764 45889999999999999999999974 2 333332211 222245644 7889997432 27778888
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHH----HHHHHhcCCCceEecCCccceEEEEEe
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKL----LAEGLNQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~----l~~~l~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
++.+.+... ....++..++..++++...++... ++.+++..++.++ +.+.+.+.+.+... +..+.++|+.+
T Consensus 250 ~~~~~~~~~--~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~g~~~~~~~ 325 (375)
T PRK04260 250 SLGGAFGYG--SHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV--RGLGYMIGIET 325 (375)
T ss_pred HHHhhcCCC--CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE--eccceEEEEEe
Confidence 887765421 233344445666666666664332 1233444444444 44444444322222 23788899988
Q ss_pred ccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.. +..++.++|.++||.+.+.+...+|++++..++++++++++++|+++
T Consensus 326 ~~----~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 326 TA----DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred cC----cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 54 56789999999999998887889999998899999999999999875
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-23 Score=185.54 Aligned_cols=329 Identities=18% Similarity=0.183 Sum_probs=218.9
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+++||.++ +....+|.+.+++.+...... .+...+...++.+.+++.++. +.+++++||++|+..+++.+
T Consensus 75 ~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklA 154 (442)
T TIGR03372 75 NEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLA 154 (442)
T ss_pred CEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHH
Confidence 367899887 455666999988887554321 233467778888889888754 34688899999999999988
Q ss_pred hhh---cC-CeEEecCC-CcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 74 CET---RG-SEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 74 ~~~---~g-~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
... +| .+|+..+. .|..+.. + ....+. .+..++.+ |.+.+++.+++.. .+..+
T Consensus 155 r~~t~~~gr~~ii~~~~~yHG~t~~--~-ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~--~~~~~ 224 (442)
T TIGR03372 155 KAYQSPRGKFTFIAASGAFHGKSLG--A-LSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECK--KTGDD 224 (442)
T ss_pred HHHHhhcCCcEEEEECCCccCCCHH--H-hhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHh--cCCCc
Confidence 753 13 45665555 4444322 1 211111 12223332 6777777775321 11157
Q ss_pred eeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCC--
Q 018243 137 TRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGA-- 211 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~-- 211 (359)
+.+|++++..++ .|.. .|.+++++++++|++||+++|+||+|.. ++..|.. ...+.-.+|+++ ++|.+|.
T Consensus 225 vAavIvEpv~g~-gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~gv~PDivt--~gK~lg~G~ 299 (442)
T TIGR03372 225 VAAIILEPIQGE-GGVILPPEGYLPAVRALCDEFGALLILDEVQTG--MGRTGKMFACEHEGVQPDILC--LAKALGGGV 299 (442)
T ss_pred EEEEEEeCccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeecccC--CCccccchhhhhcCCCCCeee--ehhhhcCCc
Confidence 899999999884 5664 5679999999999999999999999842 2222332 112223567654 6798864
Q ss_pred -ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecC
Q 018243 212 -PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVD 285 (359)
Q Consensus 212 -~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~ 285 (359)
|.|+ +++++++.+.+......++.++..+++.++++...++...+ +..++..++.++|++.|+++ |..-...
T Consensus 300 ~Piga-vv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~v- 377 (442)
T TIGR03372 300 MPIGA-TIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEA- 377 (442)
T ss_pred ccceE-EEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-
Confidence 4555 55677887776321113455666678888888888876543 24556667777777777664 2111111
Q ss_pred CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 286 AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
...+.++.+.+..+ .....+.+.|.++||.+.+. +...+|+.++..++++++++++++|++++
T Consensus 378 RG~Gl~~giel~~~--~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 378 RGKGLLMAIEFRDN--EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ecceEEEEEEeCCh--HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 34677778887652 24578899999999998654 34789999999999999999999998764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=192.66 Aligned_cols=289 Identities=19% Similarity=0.238 Sum_probs=193.1
Q ss_pred ccCCCCCChHHHHHHHHHcCCCC---C-Cc--cCC----ChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhh
Q 018243 8 LRSDTVTKPTEAMRAAMASAEVD---D-DV--LMH----DPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~~---~-~~--~~~----~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~ 75 (359)
|++...+.+++.+++++.+.... . .. +.. .....++++.+++++|.+. .++++|+++++..++..+..
T Consensus 2 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 81 (353)
T TIGR03235 2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLAR 81 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 55556666678888888664321 1 11 111 1335789999999999864 35666667888888877653
Q ss_pred ---hcC-CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 76 ---TRG-SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 76 ---~~g-~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++| +.|+++...|.+........+..|++++.++.+.++.+|++++++.++ +++++|+++++. ||||
T Consensus 82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~--------~~~~lv~~~~~~-n~tG 152 (353)
T TIGR03235 82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR--------PDTLLVSIMHVN-NETG 152 (353)
T ss_pred hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC--------CCCEEEEEEccc-CCce
Confidence 245 678898888877654112234468899999887788899999999997 678899986554 5999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHH--H
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKA--R 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~--~ 228 (359)
.+.| +++|.++|+++|+++|+|++|++|.... .... .++|++++|.+|++| |.| |+++.+++..... +
T Consensus 153 ~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~---~~~~--~~~D~~~~s~~K~~g-p~g~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 153 SIQP---IREIAEVLEAHEAFFHVDAAQVVGKITV---DLSA--DRIDLISCSGHKIYG-PKGIGALVIRKRGKPKAPLK 223 (353)
T ss_pred eccC---HHHHHHHHHHcCCEEEEEchhhcCCccc---cccc--cCCCEEEeehhhcCC-CCceEEEEEccCcccccccC
Confidence 9988 7999999999999999999998766532 2222 379999999999876 655 8887776643221 1
Q ss_pred HHHH-------hhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEEEe
Q 018243 229 RLRK-------TLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYFEI 296 (359)
Q Consensus 229 ~~~~-------~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~~~ 296 (359)
.... ...++.....+ .+...++ ....+.+.+++.++.+++++.|++ +|+++..++. ...++.+.+
T Consensus 224 ~~~~~~~~~~~~~~gt~~~~~~--~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~ 300 (353)
T TIGR03235 224 PIMFGGGQERGLRPGTLPVHLI--VGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSI 300 (353)
T ss_pred ceeeCCCCcCccccCCCChHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEe
Confidence 1000 01111111111 1122222 334445677888899999999988 5998754332 223455555
Q ss_pred ccchHHHHHHHHHHHHhcCceeccC
Q 018243 297 TEDSKLYAACLLKKLEEHGVLVMPE 321 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~gi~~~~~ 321 (359)
+. .+.+++.+.|.+ ||.+.++
T Consensus 301 ~~---~~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 301 DG---VNSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred CC---cCHHHHHHHHhC-CeEEEch
Confidence 43 477889999965 8888665
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=185.05 Aligned_cols=280 Identities=18% Similarity=0.145 Sum_probs=201.4
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|....+|+.++++.|.+.++.++||+.|+..++.+++ ++||+|+++...|...+... ......|++++.++.++
T Consensus 62 ~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~-- 138 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDR-- 138 (384)
T ss_pred CChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCC--
Confidence 378899999999999999999999999999999999887 69999999887665555311 22456788888887542
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
.+.+. ++. .++++|+++++.| ||+.+.+ +++|+++|++++ +++|.+++ .+..+. ++
T Consensus 139 ---~~~~~--l~~-------~~tklv~~e~~sn-pt~~v~D---i~~I~~la~~~~--lvVD~t~~---s~~~~~---pl 194 (384)
T PRK06434 139 ---LNSLD--FDP-------SNYDLIYAESITN-PTLKVPD---IKNVSSFCHEND--VIVDATFA---SPYNQN---PL 194 (384)
T ss_pred ---hhhee--ecC-------CCeeEEEEEcCCC-CCceeec---HHHHHHHHHHcC--eEEECCCC---CcccCC---ch
Confidence 22222 331 4789999977665 9998766 899999999998 56799842 122222 33
Q ss_pred hcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|++++|.+|+++++. ||+++. ++++.++++..+...|... ++..++.+..+++.... ++++..+++..+
T Consensus 195 ~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~--~~~~A~l~~~gL~tL~~-R~~r~~~~a~~~ 271 (384)
T PRK06434 195 DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNP--DPIQAYLALRGLKTLGL-RMEKHNKNGMEL 271 (384)
T ss_pred hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCCCcHHH-HHHHHHHHHHHH
Confidence 3589999999999997643 677765 6677777776655566554 56667777777777655 889999999999
Q ss_pred HHHHhcCCCce-EecCC---------ccceEEEEEeccchHHHHHHHHHHHHhcCceec----------cC---------
Q 018243 271 AEGLNQLKGLR-VDVDA---------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----------PE--------- 321 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----------~~--------- 321 (359)
.+.|++.|.++ +..|. ..+.++.|.+.. .....+|.+.|+--.+.+. |.
T Consensus 272 a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~ 349 (384)
T PRK06434 272 ARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS--MEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSP 349 (384)
T ss_pred HHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC--HHHHHHHHHhCCcceEccCCCCCCeeeECCCccccccCCH
Confidence 99999988764 44432 356778888864 2356677777743222211 11
Q ss_pred --------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 --------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 --------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++.||+++. + |+.+.+++-|.+++.
T Consensus 350 e~~~~~gi~~~liRlsvG--l--Ed~~dLi~dl~~Al~ 383 (384)
T PRK06434 350 EERERLGISDNLVRFSIG--I--EDIDDLIKDIENALS 383 (384)
T ss_pred HHHHhcCCCcCeEEEEeC--c--CCHHHHHHHHHHHhc
Confidence 2346999995 3 578888888887775
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=188.29 Aligned_cols=340 Identities=16% Similarity=0.141 Sum_probs=217.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.++++++ .+..++++||++|+..+++.
T Consensus 43 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~Alkl 122 (433)
T PRK08117 43 KEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKL 122 (433)
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 357898886 2334458888888875533111 1245777899999999983 33457779999999999998
Q ss_pred hhhhcC-CeEE-ecCCCcceeeccccccccC-------Cc-----cceeeecCCCCC------------CCHHHHHHHhc
Q 018243 73 HCETRG-SEVI-LGDNSHIHIYENGGISTIG-------GV-----HPRTVKNNQDGT------------MDIDLIEAAIR 126 (359)
Q Consensus 73 ~~~~~g-~~vl-~~~~~~~~~~~~~~~~~~~-------g~-----~~~~v~~~~~~~------------~~~~~l~~~l~ 126 (359)
+..-.| .+|+ +...+|..+.. ++.... +. .+..++.+..+. -+++++++.++
T Consensus 123 Ar~~tgr~~ii~~~~~yHG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 200 (433)
T PRK08117 123 AKHVTKRPYIISFTGCFHGRTLG--ALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFK 200 (433)
T ss_pred HHHhcCCCeEEEECCCcCCcCHH--HHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHH
Confidence 764233 3455 44555655432 110000 00 112222221110 14566777765
Q ss_pred CCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEE
Q 018243 127 DPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASV 203 (359)
Q Consensus 127 ~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~ 203 (359)
+... ..++.+|++++..++ .|.. .+.+++++++++|++||+++|+||+|.. +...|.... .+...+|+ .
T Consensus 201 ~~~~---~~~~aavi~Epi~~~-~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG--~gr~G~~~~~~~~gv~pDi--~ 272 (433)
T PRK08117 201 HQVT---PEEVAAVIIEPVLGE-GGYIVPPKSFLKKLREICDRHGILLIFDEVQTG--FGRTGEWFAAQTFGVVPDI--M 272 (433)
T ss_pred hccC---CCcEEEEEECCeeCC-CCCccCCHHHHHHHHHHHHHcCCEEEEecchhc--cCccccchhHhhcCCCCCE--e
Confidence 3111 146899999999885 4554 5679999999999999999999999863 333343221 22123454 5
Q ss_pred eccccCCCce-eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCC---
Q 018243 204 CLSKGLGAPV-GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLK--- 278 (359)
Q Consensus 204 s~~K~~g~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~--- 278 (359)
+++|.++.+. .|++++++++.+.+.. ...+.++..+++.++++..+++... +...++..++.+++++.|+++.
T Consensus 273 t~sK~lg~G~pigav~~~~~i~~~~~~--~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~ 350 (433)
T PRK08117 273 TIAKGIASGLPLSAVVASKELMEQWPL--GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKH 350 (433)
T ss_pred ehhhhccCCCcceeEEEcHHHHhhccC--CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8889997432 2667788888877632 2345555567777888888886542 2355666677777777776641
Q ss_pred CceEecCCccceEEEEEeccc----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 279 GLRVDVDAVETNIVYFEITED----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+... .+..+.++.+.+..+ .......+.+.|.++||.+.+.+ ...+|++++..++++++++++++|.+++++
T Consensus 351 ~~~~~-vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 429 (433)
T PRK08117 351 PVIGD-VRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTE 429 (433)
T ss_pred Cceee-eecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 11111 133455566666421 12345678888899999886543 478999998899999999999999999987
Q ss_pred HHh
Q 018243 353 VCE 355 (359)
Q Consensus 353 ~~~ 355 (359)
+.+
T Consensus 430 ~~~ 432 (433)
T PRK08117 430 YEA 432 (433)
T ss_pred Hhc
Confidence 743
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=183.05 Aligned_cols=339 Identities=17% Similarity=0.121 Sum_probs=218.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +....+|.+.+++.+...... .+..++...++.+.+++.++. +...+++||++|+..+++.
T Consensus 41 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~Alkl 120 (443)
T PRK08360 41 NEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKF 120 (443)
T ss_pred CEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHH
Confidence 357899887 445556999988887654321 223356677888888888765 3568899999999999998
Q ss_pred hhhhcCC-eEEec-CCCcceeeccccccccCC------------ccceeeecCCCCC------------CCHHHHHHHhc
Q 018243 73 HCETRGS-EVILG-DNSHIHIYENGGISTIGG------------VHPRTVKNNQDGT------------MDIDLIEAAIR 126 (359)
Q Consensus 73 ~~~~~g~-~vl~~-~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~~~~~l~~~l~ 126 (359)
+..-.|. +|+.- ...|..... + ....+ ..+..++.+.... -+++.+++.++
T Consensus 121 Ar~~tgr~~ii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (443)
T PRK08360 121 ARAYTKRRKILSYLRSYYGSTYG--A-MSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFE 197 (443)
T ss_pred HHHhcCCCeEEEEeCCcCCcCHH--H-HHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHH
Confidence 8754443 45543 445544322 1 11111 0122222221110 12345666665
Q ss_pred CCCCCccCCceeEEEEeccccCCCceecC-hhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEE
Q 018243 127 DPKGEIVYPTTRLICLENTHANCGGRCLS-VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASV 203 (359)
Q Consensus 127 ~~~~~~~~~~~~~v~i~~~~~~ptG~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~ 203 (359)
+. .+.+++++|++++. .+|+|..++ .++++++.++|++||+++|+||+|... ...+.. ...+....|++
T Consensus 198 ~~---~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--gr~G~~~a~~~~~~~pDii-- 269 (443)
T PRK08360 198 GE---VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGL--GRTGKWFAIEHFGVEPDII-- 269 (443)
T ss_pred hc---cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC--CcCccchhhhhcCCCCCEE--
Confidence 31 11157999999774 458998776 568999999999999999999997532 223321 11222245655
Q ss_pred eccccCCCce-eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-C--
Q 018243 204 CLSKGLGAPV-GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL-K-- 278 (359)
Q Consensus 204 s~~K~~g~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~-~-- 278 (359)
+++|.++.+. .|++++++++.+.+... ..+.++..++..++++..+++...+ +..++..++.++|++.|+++ .
T Consensus 270 tlsK~l~~G~pigav~~~~~i~~~~~~~--~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~ 347 (443)
T PRK08360 270 TLGKPLGGGLPISATIGRAEIMDSLPPL--AHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKH 347 (443)
T ss_pred EecccccCCceeEEEEEcHHHHhhhcCC--CCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5689997432 27788888888876532 2344555567777777777765433 35566667777777777653 0
Q ss_pred CceEecCCccceEEEEEeccc------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 279 GLRVDVDAVETNIVYFEITED------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.... ...+.++.+.+..+ ....+..+...|.++|+.+.+.+...+|++++..++++++++++++++++++.
T Consensus 348 ~~v~~v-rg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 348 ELIGDV-RGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred CCeeee-eccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 121111 23555666655321 11245678888999999987666688999999999999999999999999987
Q ss_pred HHh
Q 018243 353 VCE 355 (359)
Q Consensus 353 ~~~ 355 (359)
+.+
T Consensus 427 ~~~ 429 (443)
T PRK08360 427 VEE 429 (443)
T ss_pred HHh
Confidence 753
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=184.42 Aligned_cols=276 Identities=18% Similarity=0.131 Sum_probs=191.1
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|...++++.++++. .+.+++++||++|+..++.+++ ++||+|+++.+.|+...... ......|++++.++.+++
T Consensus 49 ~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~- 125 (366)
T PRK07582 49 SNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM- 125 (366)
T ss_pred CCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCCh-
Confidence 4678899999999999 5678999999999998888887 59999999999986654311 013456888888865422
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
.. .+. +++++|+++++ +||||.+.+ +++|.++|+++|+++|+|++|... .+....+
T Consensus 126 ----~~---~~~--------~~t~lV~le~p-~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~----~~~~p~~- 181 (366)
T PRK07582 126 ----AE---AAL--------AGADLVLAETP-SNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP----LGQRPLE- 181 (366)
T ss_pred ----HH---Hhc--------cCceEEEEECC-CCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc----cccCchh-
Confidence 11 223 57889999655 559997765 899999999999999999986321 1212222
Q ss_pred hcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
.++|+++.|+||+++++. +|+++. ++++.+.++..+...+... ++..++.+..+++... .++++..+++..+
T Consensus 182 -~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~--~~~~a~l~~r~l~tl~-~R~~~~~~na~~l 257 (366)
T PRK07582 182 -LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIP--GPFEAWLAHRSLGTLG-LRFARQCANALAV 257 (366)
T ss_pred -cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCC--CHHHHHHHHhccccHH-HHHHHHHHHHHHH
Confidence 368999999999997654 377776 6888888887777666555 4566666666676543 3778889999999
Q ss_pred HHHHhcCCCce-EecC-----C----------ccceEEEEEeccchHHHHHHHHHHHHhcCceec---c-----------
Q 018243 271 AEGLNQLKGLR-VDVD-----A----------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM---P----------- 320 (359)
Q Consensus 271 ~~~l~~~~g~~-~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~----------- 320 (359)
.+.|++.|.+. +..| | ..+.++.|.+.. .++..+.+...++... -
T Consensus 258 a~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~-----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~ 332 (366)
T PRK07582 258 AELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD-----AAAAERFVAASRLVVAATSFGGVHTSADRRA 332 (366)
T ss_pred HHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC-----HHHHHHHHHhCCcceecccCCCccchhhhHH
Confidence 99999988774 3322 1 246677888853 2233344444444321 0
Q ss_pred -----CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 321 -----ESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 321 -----~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.||++++.. +.+++++.|+++++
T Consensus 333 ~~~~~~~~~liR~svGlE----~~~dli~dl~~al~ 364 (366)
T PRK07582 333 RWGDAVPEGFVRLSCGIE----DTDDLVADLERALD 364 (366)
T ss_pred HcCCCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 1235799999744 44555555555544
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=185.61 Aligned_cols=334 Identities=15% Similarity=0.152 Sum_probs=214.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc--c--CCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV--L--MHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|.+.+++.+....... + ..++...++.+.+++..+. +...+++||++|+..+++
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~Alk 119 (421)
T PRK09792 40 NEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVK 119 (421)
T ss_pred CEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHH
Confidence 357898776 3344458888888775543221 1 2356667888888887753 356889999999999999
Q ss_pred HhhhhcCC-eEEecCC-CcceeeccccccccCCc-------------cceeeecCCCC-CC----CHHHHHHHhcCCCCC
Q 018243 72 VHCETRGS-EVILGDN-SHIHIYENGGISTIGGV-------------HPRTVKNNQDG-TM----DIDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~~~g~-~vl~~~~-~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~-~~----~~~~l~~~l~~~~~~ 131 (359)
.+..-.|. +|+.... +|+.+.. . ....+. .+..++.+.+. .+ +++.+++.+++..
T Consensus 120 lAr~~tgr~~ii~~~~~yHG~t~~--~-~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~-- 194 (421)
T PRK09792 120 IARAHTGRPGVIAFSGGFHGRTYM--T-MALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI-- 194 (421)
T ss_pred HHHHhcCCCeEEEECCCcCCccHH--H-HhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcc--
Confidence 98754443 4554444 5544322 1 111110 12222222111 11 3467777776310
Q ss_pred ccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~ 208 (359)
...++++|++++.. +++|... |.+++++|+++|++||+++|+||++... ...+.. ...+...+|+ .+++|.
T Consensus 195 -~~~~iaavi~EPvq-~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~--gr~G~~~a~~~~~~~pDi--~t~gK~ 268 (421)
T PRK09792 195 -EAKQVAAIIFEPVQ-GEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGF--ARTGKLFAMDHYADKPDL--MTMAKS 268 (421)
T ss_pred -CCCceEEEEEcccc-CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC--CCCCchhHHHhcCCCCcE--EEeehh
Confidence 11578999998874 5889764 8899999999999999999999997532 223332 2222235664 577899
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceE
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRV 282 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~ 282 (359)
+++... |++++++++.+.+... ..+.++..+++.++++...++...+ +..++..++.+++.+.|++ .|.+.
T Consensus 269 l~~G~pigav~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~- 345 (421)
T PRK09792 269 LAGGMPLSGVVGNANIMDAPAPG--GLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIA- 345 (421)
T ss_pred hcCCCceEEEEEcHHHHhccCCC--CcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCcc-
Confidence 864332 6688888888776422 2445555667777777666654322 2444555556666665554 33322
Q ss_pred ecCCccceEEEEEeccch-----HHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITEDS-----KLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.....+.++++.+..+. ......+.+.+.++||.+.+.+ .+.+|+.++..++++++++++++|.++++
T Consensus 346 -~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 346 -AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred -eecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 22345888898886421 1346788889999999996533 47899999988999999999999998875
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=176.79 Aligned_cols=336 Identities=18% Similarity=0.171 Sum_probs=230.0
Q ss_pred ccccccCCCCC----ChHHHHHHHHHcCCCCCCccCC-ChHHHHHHHHHHHHhCC-CCeEEcCCchHHHHHHHHHhhhh-
Q 018243 4 RTVDLRSDTVT----KPTEAMRAAMASAEVDDDVLMH-DPTAFRLETEMAKVMGK-EAGLFVPSGTMGNLISVLVHCET- 76 (359)
Q Consensus 4 ~~id~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~-~~~~~~~~gt~a~~~~l~~~~~~- 76 (359)
++|||-.+.-. ..+|.|.+++.+.......|+. ++...++-+.+.+.++. +..-+++|||+|...+++.++.-
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~T 133 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYT 133 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhh
Confidence 56777765332 3348999999987776666764 56667888889999887 77889999999999999988653
Q ss_pred cCCeEEecCCCcceeecccccccc-CC-----------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 77 RGSEVILGDNSHIHIYENGGISTI-GG-----------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~-~g-----------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
..++|+..+.+|....... ..+. .| ...+.++.+ |++.+++.+++.. .+++
T Consensus 134 gR~kIikF~G~YHG~~D~~-lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g-----~~IA 202 (432)
T COG0001 134 GRDKIIKFEGCYHGHSDSL-LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYG-----DDIA 202 (432)
T ss_pred CCCeEEEEcCCCCCCccHH-HhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcC-----CcEE
Confidence 3457777776665544311 1111 11 122333444 9999999999643 5899
Q ss_pred EEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEE
Q 018243 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVI 217 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~ 217 (359)
+|++++...|.+=+....+++++|+++|+++|+++|.||+... .....+-...-+.-.+|+. ++.|..|++.. |++
T Consensus 203 aVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG-FR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP~ga~ 279 (432)
T COG0001 203 AVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG-FRVALGGAQGYYGVEPDLT--TLGKIIGGGLPIGAF 279 (432)
T ss_pred EEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh-cccCCcccccccCcCcchh--hhhhhhcCCcceeee
Confidence 9999999998643355559999999999999999999999643 2222222223332345644 56698876544 667
Q ss_pred ecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHH--HHhhhHHHHHHHHHHHHhcC---CCceEecCCccceE
Q 018243 218 VGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVL--VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETNI 291 (359)
Q Consensus 218 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~~ 291 (359)
.+++++++.+.... .+..++++.+++.++++..+++...+ ...++..+..++|++.|++. .++.+......+.+
T Consensus 280 gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~ 359 (432)
T COG0001 280 GGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMF 359 (432)
T ss_pred ccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceE
Confidence 88999999865444 35567788889999999998876654 14677777788888777763 26655433333333
Q ss_pred -EEEEeccc-h--------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 292 -VYFEITED-S--------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 292 -~~~~~~~~-~--------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
++|.-... . ......+..+|.++||++.|..-...=+|. .++++++++.+++++++++++..
T Consensus 360 ~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~ea~flS~--ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 360 GIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLST--AHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred EEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccccceeeec--ccCHHHHHHHHHHHHHHHHHhhc
Confidence 22322110 0 012345666888999999776534444555 79999999999999999888753
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-23 Score=167.78 Aligned_cols=303 Identities=21% Similarity=0.261 Sum_probs=213.1
Q ss_pred HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc
Q 018243 18 EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG 95 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~ 95 (359)
.+-...+.....-...|.. .|....+|++++.+-|--..+.+.||..|...++..+. ++||.|+.++.-|...+..-
T Consensus 40 ~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~lf 118 (426)
T COG2873 40 TDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYNLF 118 (426)
T ss_pred HHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHHHH
Confidence 3333334433222445553 68889999999999988888999999999999999999 59999999988887765411
Q ss_pred -cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEE
Q 018243 96 -GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 96 -~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li 174 (359)
-..+..|+++.+++.+ |++.+++.++ ++||+|++++..| |.+.+.+ +++|.++|+++|+++|
T Consensus 119 ~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~--------~nTkavf~EtigN-P~~~v~D---ie~ia~iAh~~gvpli 181 (426)
T COG2873 119 SHTLKRLGIEVRFVDPD-----DPENFEAAID--------ENTKAVFAETIGN-PGLDVLD---IEAIAEIAHRHGVPLI 181 (426)
T ss_pred HHHHHhcCcEEEEeCCC-----CHHHHHHHhC--------cccceEEEEeccC-CCccccC---HHHHHHHHHHcCCcEE
Confidence 1246789999999766 8999999999 8999999988776 9988877 8999999999999999
Q ss_pred EecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecC--HHH---------------------HH---
Q 018243 175 IDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGS--KEF---------------------IK--- 225 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~--~~~---------------------~~--- 225 (359)
||.. +.. +.-..++..++|+++.|.+||.|+ ..||+++-. -++ .+
T Consensus 182 VDNT--~at----pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g 255 (426)
T COG2873 182 VDNT--FAT----PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFG 255 (426)
T ss_pred EecC--CCc----ceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcc
Confidence 9997 221 223455656999999999999975 245666521 111 11
Q ss_pred ------HHH-HHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEe-c-------------
Q 018243 226 ------KAR-RLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVD-V------------- 284 (359)
Q Consensus 226 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~------------- 284 (359)
+.+ ....-.|.+. ++..++..+.+++..-- +++|..+++..+.+.|++.|.+... .
T Consensus 256 ~~af~~~~r~~~lRDlGa~l--sPfnAfl~lqGlETL~L-RmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~ 332 (426)
T COG2873 256 NAAFIIKARVQLLRDLGATL--SPFNAFLLLQGLETLSL-RMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAK 332 (426)
T ss_pred cHHHHHHHHHHHHHhccccc--CcHHHHHHHhchhhhHH-HHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHH
Confidence 111 1111234444 55556666666665443 8899999999999999998765431 1
Q ss_pred ---CCccceEEEEEeccchHHHHHHHHHHHHh----------cCceeccC-----------------CCcEEEEEeCCCC
Q 018243 285 ---DAVETNIVYFEITEDSKLYAACLLKKLEE----------HGVLVMPE-----------------SSTRVRIVVHHQI 334 (359)
Q Consensus 285 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~gi~~~~~-----------------~~~~lRi~~~~~~ 334 (359)
+...+.++.|.+.+. .....+|.+.|+- +-+.+-|. .++.||+|+.
T Consensus 333 kyl~~g~g~vltF~~kgg-~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVG--- 408 (426)
T COG2873 333 KYLPKGAGAVLTFGVKGG-YEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG--- 408 (426)
T ss_pred hhccCCCceEEEEEecCh-HHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEec---
Confidence 234566778888763 2344555555531 22233232 4567999984
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 018243 335 SANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~~ 352 (359)
-|+++.++.-|++++++
T Consensus 409 -IEd~~DiiaDl~qAl~~ 425 (426)
T COG2873 409 -IEDIDDIIADLEQALEA 425 (426)
T ss_pred -cCCHHHHHHHHHHHHhc
Confidence 37888888888887764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=184.26 Aligned_cols=339 Identities=17% Similarity=0.122 Sum_probs=217.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc-----cCCChHHHHHHHHHHHHhC-C--CCeEEcCCchHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV-----LMHDPTAFRLETEMAKVMG-K--EAGLFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~-~--~~~~~~~~gt~a~~~~l 70 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.+.+.+. . ..+.+++||++|+..++
T Consensus 89 ~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~Al 168 (504)
T PLN02760 89 KKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQV 168 (504)
T ss_pred CEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHH
Confidence 367999884 4445559999999886543221 1245667888888888863 2 34588999999999999
Q ss_pred HHhhh------hcC-CeEE-ecCCCcceeeccccccccCCcc------------ceeeecCCCCC-------------CC
Q 018243 71 LVHCE------TRG-SEVI-LGDNSHIHIYENGGISTIGGVH------------PRTVKNNQDGT-------------MD 117 (359)
Q Consensus 71 ~~~~~------~~g-~~vl-~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~-------------~~ 117 (359)
+.+.. +++ .+|+ +...+|..+.. + ..+.|.. +..++.+..+. ..
T Consensus 169 KlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~--a-~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 245 (504)
T PLN02760 169 KLVWYYNNALGRPNKKKFIARSKSYHGSTLI--S-ASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRL 245 (504)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCccCChHh--h-hhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHH
Confidence 98852 122 3455 45556666543 1 2222211 11111111000 01
Q ss_pred HHHHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhh
Q 018243 118 IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLV 195 (359)
Q Consensus 118 ~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~ 195 (359)
.+++++.+.+. +..++.+|++++...+ .|. ..|.+++++++++|++||+++|+||++. +|-.+. ......+.
T Consensus 246 ~~~le~~l~~~----~~~~iAAvI~EPv~g~-gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g 319 (504)
T PLN02760 246 ADNLENLILKE----GPETIAAFIAEPVMGA-GGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN 319 (504)
T ss_pred HHHHHHHHHhc----CCCceEEEEECCccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC
Confidence 24466666421 1146889999998884 465 4567999999999999999999999983 444332 11112222
Q ss_pred cCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH-----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHH
Q 018243 196 QAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR-----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKK 266 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 266 (359)
-.+|+ .+++|.+|+ |.|+ +++++++.+.+.... ...+.+++.+++.++++...++...+ +..++..++
T Consensus 320 v~PDi--vtlgK~lggG~~PigA-v~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~ 396 (504)
T PLN02760 320 IKPDL--VSLAKALSSAYMPIGA-VLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKI 396 (504)
T ss_pred CCCcE--EEecccccCCccccce-EeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 24665 466798865 4555 677888888764321 12456666778888888888876544 356677778
Q ss_pred HHHHHHHHhcCCCceEe-cCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCH
Q 018243 267 AKLLAEGLNQLKGLRVD-VDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISA 336 (359)
Q Consensus 267 ~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~ 336 (359)
.++|++.|+++....+. .-...+.++.+.+..+. ......+.+.+.++||.+.+.+ ..+|++++..+++
T Consensus 397 g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lrl~Ppl~it~ 475 (504)
T PLN02760 397 APRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIMMSPPLIITP 475 (504)
T ss_pred HHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-CEEEEECCCCCCH
Confidence 88888887764222111 01234556666663311 0125568888899999997654 5799999889999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~~~ 354 (359)
+|+++++++++++++++.
T Consensus 476 eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 476 EEVDELISIYGKALKATE 493 (504)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=181.96 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=161.2
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC----C-CC-ccCCC--hHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV----D-DD-VLMHD--PTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~----~-~~-~~~~~--~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~ 73 (359)
+.+.++++..+..++.|.++|..... + +. .|+.. ...++.|+.+|+++|++. .+||.++|+++..++...
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v 122 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGV 122 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHh
Confidence 56777777777667888888765322 2 12 24443 337889999999999975 378889999999999988
Q ss_pred hhhcCC----eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 74 CETRGS----EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 74 ~~~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
....++ +|++....|.+........+..|++++.+|.+.++.+|.+.+++.|+ ++|++|.+.+..| .
T Consensus 123 ~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~--------~~T~lv~I~~Vnn-~ 193 (428)
T KOG1549|consen 123 ARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR--------SKTRLVSIMHVNN-E 193 (428)
T ss_pred hccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC--------CCceEEEEEeccc-C
Confidence 654565 89999999999876333345578899999999889999999999999 8999999977776 6
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK 221 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~ 221 (359)
+|+..| +++|.++|+++|+.+++|.||+.|.. .....++ ++|+++++.|||+|.|+-|++++++
T Consensus 194 ~gv~~P---v~EI~~icr~~~v~v~~DaAQavG~i---~vDV~el--n~D~~s~s~HK~ygp~~iGaLYvr~ 257 (428)
T KOG1549|consen 194 IGVLQP---VKEIVKICREEGVQVHVDAAQAVGKI---PVDVQEL--NADFLSISAHKIYGPPGIGALYVRR 257 (428)
T ss_pred cccccc---HHHHHHHhCcCCcEEEeehhhhcCCc---cccHHHc--CchheeeecccccCCCcceEEEEcc
Confidence 799999 89999999999999999999977655 4556666 8999999999999966558888875
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-22 Score=179.94 Aligned_cols=338 Identities=17% Similarity=0.151 Sum_probs=216.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|.+.+++.+....... +...+...++.+.+++.++.. ...+++||++|+..+++
T Consensus 42 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~Aik 121 (445)
T PRK08593 42 KTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIK 121 (445)
T ss_pred CEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHH
Confidence 357899776 4445569999888876543221 234677788999999988543 45788999999999999
Q ss_pred HhhhhcCC-eEEe-cCCCcceeeccccccccCC-------------ccceeeecCCCC-----CCC-------HHHHHHH
Q 018243 72 VHCETRGS-EVIL-GDNSHIHIYENGGISTIGG-------------VHPRTVKNNQDG-----TMD-------IDLIEAA 124 (359)
Q Consensus 72 ~~~~~~g~-~vl~-~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~-----~~~-------~~~l~~~ 124 (359)
.+..-.|. +|+. ...+|..+.. + ....+ ..+..++.++.. ..+ ++.+++.
T Consensus 122 lAr~~tgr~~ii~~~~~YHG~t~~--a-ls~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
T PRK08593 122 FARAYTGRPYIISFTNAYHGSTYG--S-LSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEM 198 (445)
T ss_pred HHHHhhCCCeEEEECCCcCCCcHH--H-HhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHH
Confidence 87643443 4554 4455555432 1 11111 012223322111 011 1344444
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEE
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSA 201 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~ 201 (359)
+++.. ...++++|++++..++ +|.. .|.+++++++++|++||+++|+||++... +..|.. ...+...+|++
T Consensus 199 ~~~~~---~~~~iAavI~EPv~g~-gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~--GrtG~~~a~~~~gv~pDi~ 272 (445)
T PRK08593 199 FEKYL---PADEVACIVIETIQGD-GGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL--GRTGKWSSISHFNITPDLM 272 (445)
T ss_pred HHhhc---CCCceEEEEEccccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC--CcCchHHHHHhcCCCCCEe
Confidence 43210 0157899999998884 5665 78899999999999999999999997422 122321 11222245655
Q ss_pred EEeccccCCCce-eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC--
Q 018243 202 SVCLSKGLGAPV-GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL-- 277 (359)
Q Consensus 202 ~~s~~K~~g~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~-- 277 (359)
+++|.+++.. .|++++++++.+.+.. .....++..++..++++...++...+ +..++..++.++|++.|+++
T Consensus 273 --t~gK~l~~G~p~gav~~~~~i~~~~~~--~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~ 348 (445)
T PRK08593 273 --SFGKSLAGGMPMSAIVGRKEIMESLEA--PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVS 348 (445)
T ss_pred --eecccccCCcccEEEEEcHHHHhhhcc--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 6678886432 3668888898887642 23344566677778878888865443 35566667777777777653
Q ss_pred --CCceEecCCccceEEEEEeccc------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 278 --KGLRVDVDAVETNIVYFEITED------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 278 --~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
|.+. .. ...+.++.+.+..+ .......+...|.++||.+.+.+...+|+.++..++++|+++++++++++
T Consensus 349 ~~~~v~-~v-rG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~ 426 (445)
T PRK08593 349 KYNFVG-DV-RGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQA 426 (445)
T ss_pred cCCcEE-EE-eccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 2221 11 23455544544321 11245678889999999997655688999999999999999999999999
Q ss_pred HHHHHh
Q 018243 350 YAGVCE 355 (359)
Q Consensus 350 ~~~~~~ 355 (359)
++++..
T Consensus 427 l~~~~~ 432 (445)
T PRK08593 427 FTALEA 432 (445)
T ss_pred HHHHhc
Confidence 988754
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-22 Score=181.44 Aligned_cols=302 Identities=16% Similarity=0.255 Sum_probs=198.8
Q ss_pred CCccCCChHHHHHHHHHHHHh----CC------------C---CeEEcCCchHHHHHHHHHhhhh---------------
Q 018243 31 DDVLMHDPTAFRLETEMAKVM----GK------------E---AGLFVPSGTMGNLISVLVHCET--------------- 76 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~----~~------------~---~~~~~~~gt~a~~~~l~~~~~~--------------- 76 (359)
...+..+|...++|+.+.+|+ +. + .++++++||+|++.++..++.+
T Consensus 118 ~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~g 197 (522)
T TIGR03799 118 LVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREG 197 (522)
T ss_pred cceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccccccccccc
Confidence 334556777777777766554 21 1 2588999999999999988642
Q ss_pred ----------cCCeEEecCCCcceeeccccccccCCc---cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 77 ----------RGSEVILGDNSHIHIYENGGISTIGGV---HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 77 ----------~g~~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
++..|++++..|++..+ + +...|+ +++.++.++++.+|++.|++.+++... .+++.+++.
T Consensus 198 l~~~~~~~~~~~~~v~~S~~~H~S~~k-a--a~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~----~g~~~~~vv 270 (522)
T TIGR03799 198 LFAALKHYGYDGLAILVSERGHYSLGK-A--ADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAE----QNIKPLAIV 270 (522)
T ss_pred chhhhhhccCCceEEEECCCchHHHHH-H--HHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHH----CCCCcEEEE
Confidence 12358899999999876 3 555565 688889889999999999999973211 233344332
Q ss_pred -ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCcee-eEEe
Q 018243 144 -NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVG-SVIV 218 (359)
Q Consensus 144 -~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~g-g~~~ 218 (359)
...++.||.+-| +++|.++|+++|+++++|.|++.+... ......+ ...+|+++++.|||+++|.| |+++
T Consensus 271 ataGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~--~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~ll 345 (522)
T TIGR03799 271 GVAGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLL--SNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVL 345 (522)
T ss_pred EEecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHh--CHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEE
Confidence 344457888766 899999999999999999997544332 1111111 13689999999999999988 7666
Q ss_pred c-CHHHHHHHHHHHHhh-------------CCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 219 G-SKEFIKKARRLRKTL-------------GGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 219 ~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
. +++..+.+.....+. ..+.+...+..++++..+ ....+...++..++++++.+.|++.|++++.
T Consensus 346 vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~ 425 (522)
T TIGR03799 346 FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELV 425 (522)
T ss_pred EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence 5 555555443211110 011111111222333333 3455568888889999999999999999987
Q ss_pred cCCccceEEEEEeccch----------------H----HHHHHHHHHHHhcCceecc-----C------CCcEEEEEe-C
Q 018243 284 VDAVETNIVYFEITEDS----------------K----LYAACLLKKLEEHGVLVMP-----E------SSTRVRIVV-H 331 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~----------------~----~~~~~~~~~l~~~gi~~~~-----~------~~~~lRi~~-~ 331 (359)
.+ +..+++.|++.+.. . .-...+.+++.+.|...+. . +...+|+++ +
T Consensus 426 ~~-p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~n 504 (522)
T TIGR03799 426 TE-PELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLAN 504 (522)
T ss_pred cC-CCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecC
Confidence 64 46677887764311 0 0123566666677876522 1 225699985 7
Q ss_pred CCCCHHHHHHHHHH
Q 018243 332 HQISANDVHYTLSC 345 (359)
Q Consensus 332 ~~~~~~~i~~~~~~ 345 (359)
+..++++++.+++.
T Consensus 505 p~tt~~~i~~~l~~ 518 (522)
T TIGR03799 505 PLTTHEILQDILDE 518 (522)
T ss_pred CCCCHHHHHHHHHH
Confidence 78889999887753
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=196.54 Aligned_cols=301 Identities=14% Similarity=0.125 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHhCCCCeEEcCCch----HHHHHHHHHhhhhcCC----eEEecCCCcceeeccccccccCCccceeee
Q 018243 38 PTAFRLETEMAKVMGKEAGLFVPSGT----MGNLISVLVHCETRGS----EVILGDNSHIHIYENGGISTIGGVHPRTVK 109 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~~~~~~gt----~a~~~~l~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 109 (359)
+...++++.+++++|.+..+++.+++ .++..++.++...+|+ .|+++...|.+... .+.+.|++++.++
T Consensus 568 ~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a---~a~~~G~~vv~v~ 644 (993)
T PLN02414 568 EMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPA---SAAMCGMKIVVVG 644 (993)
T ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHH---HHHHCCCEEEEec
Confidence 44579999999999998888888877 7899999998754477 89999999998774 4667899999999
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
.+.+|.+|+++|++.++.+. +++++|++.++.+ -+|...+ +++|+++|+++|+++++|.++..+... -.
T Consensus 645 ~d~~G~vDle~L~~~i~~~~-----~~ta~V~vt~pSn-~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~--l~ 713 (993)
T PLN02414 645 TDAKGNINIEELRKAAEAHK-----DNLAALMVTYPST-HGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVG--LT 713 (993)
T ss_pred cCCCCCcCHHHHHHHHhccC-----CCeEEEEEECCCc-cccccch---HHHHHHHHHHcCCEEEEEecCHHhccC--cC
Confidence 88899999999999998321 2688998855544 6777544 899999999999999999997443221 11
Q ss_pred hhHhhhcCccEEEEeccccCCCce-----e-eEEecCHHHHHHHHHHH--H---------hh-CCCcchhH----HHHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPV-----G-SVIVGSKEFIKKARRLR--K---------TL-GGGMRQVG----VLCAA 247 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~-----g-g~~~~~~~~~~~~~~~~--~---------~~-~~~~~~~~----~~~~~ 247 (359)
....+ ++|++.+|.||+|++|. | |++.+++++...+.... . .. .++.+..+ ..+..
T Consensus 714 ~p~~~--GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~ 791 (993)
T PLN02414 714 SPGFI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPI 791 (993)
T ss_pred Ccccc--CCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHH
Confidence 22233 89999999999997653 2 78888887766643210 0 00 11211111 11111
Q ss_pred HHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc-ceEEEEEec---cchHHHHHHHHHHHHhcCcee-
Q 018243 248 ALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE-TNIVYFEIT---EDSKLYAACLLKKLEEHGVLV- 318 (359)
Q Consensus 248 ~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~l~~~gi~~- 318 (359)
++..+ .+.+.+..+....+++|+++.|++..++.+..+... ..-+.+.+. ...+.+..++.++|.++||..
T Consensus 792 A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihap 871 (993)
T PLN02414 792 SYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAP 871 (993)
T ss_pred HHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEe
Confidence 12222 234443566677899999999987434433211111 111223333 111346688999999999976
Q ss_pred ---ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 319 ---MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 319 ---~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.| ..+.+|++++...+++|+|+++++|..+..+..+
T Consensus 872 t~~~p-v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 872 TMSWP-VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred eeccc-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 23 3678999999999999999999999999888764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=181.88 Aligned_cols=299 Identities=19% Similarity=0.215 Sum_probs=195.9
Q ss_pred hHHHHHHHHHHHHhCCC---CeEEcCCch-HHHHHHHHHhhhh--cCCeEEecCCCcceeeccccccccCCccceeeec-
Q 018243 38 PTAFRLETEMAKVMGKE---AGLFVPSGT-MGNLISVLVHCET--RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN- 110 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~---~~~~~~~gt-~a~~~~l~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~- 110 (359)
....++++.+++++|.+ .++++++|| .++.+++.++..+ +++.|++++.+|.+..+ + +...|++++.++.
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~k-A--i~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIK-A--ISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHH-H--HHHcCCeEEEeeee
Confidence 34588899999999998 678999999 6888887776632 58899999999999886 4 7788999999974
Q ss_pred --CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC
Q 018243 111 --NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG 188 (359)
Q Consensus 111 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 188 (359)
++++.+|+++|+++|++.. ++..++++.+++ |+.....+++++|.++|++||+++|+|+||+.+......
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~-----~kai~~Vv~Tp~---t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~ 253 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIG-----PDNILCVLSTTS---CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYME 253 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhcc-----CCCEEEEEEcCC---cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhh
Confidence 4668899999999998310 134455542333 344344567999999999999999999998653322111
Q ss_pred chhHhhhc-CccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-HHhHHHHhhhHH
Q 018243 189 VPVRRLVQ-AADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL-QENVLVMLDGDH 264 (359)
Q Consensus 189 ~~~~~~~~-~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 264 (359)
.....+.. .+|++++|+||++..|.+ |+++. ++++.+.++.... +.......+..++....+ .+..++.++++.
T Consensus 254 ~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~--g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~ 331 (444)
T TIGR03531 254 LINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYP--GRASASPSLDVLITLLSLGSKGYLELLKERK 331 (444)
T ss_pred hhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhcc--CCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 10011212 369999999999988765 55545 7888877664322 111111222222223233 344455778888
Q ss_pred HHHHHHHHHHhcC---CCceEecCCccceE-EEEEeccchHHHHHHHHHHHHhcCce---ec-cCCC-------------
Q 018243 265 KKAKLLAEGLNQL---KGLRVDVDAVETNI-VYFEITEDSKLYAACLLKKLEEHGVL---VM-PESS------------- 323 (359)
Q Consensus 265 ~~~~~l~~~l~~~---~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~---~~-~~~~------------- 323 (359)
++++++.+.|+++ .|..+...+ ..++ +.+.+....+.+...+...|..++|. ++ ++..
T Consensus 332 ~~a~~l~~~L~~l~~~~~~~~~~~~-~n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~ 410 (444)
T TIGR03531 332 EMYKYLKELLQKLAERHGERLLDTP-ENPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGS 410 (444)
T ss_pred HHHHHHHHHHHHHHHhhCcEeecCC-CCceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeecccc
Confidence 8888888888875 255554222 2222 33444421123677888888777663 22 2210
Q ss_pred -------cEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 324 -------TRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 324 -------~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++-+....+++++|+|.++++|++++
T Consensus 411 ~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 411 HTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred cccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 023444555789999999999998763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=180.76 Aligned_cols=333 Identities=16% Similarity=0.167 Sum_probs=211.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--cc--CCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--VL--MHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+...... .+ ...+...++.+.+++.++. +..++++||++|+..+++
T Consensus 56 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk 135 (443)
T PRK06058 56 NRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVK 135 (443)
T ss_pred CEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHH
Confidence 357899886 344556899988887654321 11 2356667888888888753 346889999999999999
Q ss_pred HhhhhcC-CeEEecCCCcceeeccccccccCC--------c-----cceeeecCCCCC------CC--------HHHHHH
Q 018243 72 VHCETRG-SEVILGDNSHIHIYENGGISTIGG--------V-----HPRTVKNNQDGT------MD--------IDLIEA 123 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g--------~-----~~~~v~~~~~~~------~~--------~~~l~~ 123 (359)
.+..-.| ++|+....+|..... ++ ..+.+ . .+..++....++ .+ .+.+++
T Consensus 136 lAr~~tgr~~ii~~~~~yHG~t~-~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (443)
T PRK06058 136 IARSYTGRQAVVVFDHAYHGRTN-LT-MALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEK 213 (443)
T ss_pred HHHHhhCCCeEEEECCCcCcChH-HH-HhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHH
Confidence 7764223 456665555443331 11 11111 0 111111111110 01 112223
Q ss_pred HhcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccE
Q 018243 124 AIRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADS 200 (359)
Q Consensus 124 ~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~ 200 (359)
.+.. .++++|++++...+ +|.. .+.+++++|+++|++||+++|+||++..... .+... ..+...+|+
T Consensus 214 ~~~~-------~~iAavi~EPi~g~-gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgR--tG~~fa~~~~gv~PDi 283 (443)
T PRK06058 214 QVGA-------DNLAAVIIEPIQGE-GGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFAR--TGAWFACEHEGIVPDL 283 (443)
T ss_pred hhCC-------CceEEEEECCccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc--ChhhhHHHhcCCCCCE
Confidence 2221 57899999887764 4655 5679999999999999999999999753222 23221 112235677
Q ss_pred EEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC
Q 018243 201 ASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK 278 (359)
Q Consensus 201 ~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~ 278 (359)
+++ +|.++++.. |++++++++.+.+... ..+.++..+++.++++...++...+ +..++..++.++|.+.|+++.
T Consensus 284 v~~--gK~l~~G~Pi~av~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~ 359 (443)
T PRK06058 284 ITT--AKGIAGGLPLSAVTGRAEIMDAPHPG--GLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALA 359 (443)
T ss_pred EEE--cccccCCCccEEEEEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 655 588864322 5677788888776422 3456666778888888888876433 355667777888888887641
Q ss_pred ---CceEecCCccceEEEEEeccc-----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 279 ---GLRVDVDAVETNIVYFEITED-----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 279 ---g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++.... ...+.++.+.+..+ .......+.+.+.++||.+.+.+ ..++|+.++..++++++++++++|++
T Consensus 360 ~~~~~i~~v-rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~ 438 (443)
T PRK06058 360 AEDDRIGDV-RGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEA 438 (443)
T ss_pred hhCCcEEee-eccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHH
Confidence 221111 33566666655321 11235667888889999997754 46899999889999999999999999
Q ss_pred HHHH
Q 018243 349 IYAG 352 (359)
Q Consensus 349 ~~~~ 352 (359)
++++
T Consensus 439 ~l~~ 442 (443)
T PRK06058 439 ALAD 442 (443)
T ss_pred HHHh
Confidence 9865
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=178.68 Aligned_cols=337 Identities=16% Similarity=0.162 Sum_probs=217.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|.+.+++.+...... .....+...++-+.+++.++. +...+++||++|+..+++
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~Alk 119 (425)
T PRK07495 40 RRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVK 119 (425)
T ss_pred CEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHH
Confidence 357899887 445556999999987654321 123356677888888888853 356899999999999999
Q ss_pred HhhhhcC-CeEEecC-CCcceeeccccccccCC-------------ccceeeecCCC-CCCC----HHHHHHHhcCCCCC
Q 018243 72 VHCETRG-SEVILGD-NSHIHIYENGGISTIGG-------------VHPRTVKNNQD-GTMD----IDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~-~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~-~~~~----~~~l~~~l~~~~~~ 131 (359)
.+..-+| .+|+... .+|+.+.. + ....+ ..++.++.+.+ ...+ ++.+++.+++..
T Consensus 120 lAr~~tgr~~ii~~~~~yHG~t~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~-- 194 (425)
T PRK07495 120 IARAATGRSAVIAFGGGFHGRTFM--G-MSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADV-- 194 (425)
T ss_pred HHHHhhCCCeEEEECCCcCCccHH--H-hhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhcc--
Confidence 8875333 3455444 45544321 1 11111 01223333211 1122 344566664210
Q ss_pred ccCCceeEEEEeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~ 208 (359)
...++++|++++..++ +| ..+|.+++++|+++|++||+++|+||++.. +...+.. .......+| +.+++|.
T Consensus 195 -~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--~gr~G~~~a~~~~gv~pD--i~tlsK~ 268 (425)
T PRK07495 195 -DPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTG--FARTGKLFAMEHHEVAAD--LTTMAKG 268 (425)
T ss_pred -CCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhc--CCcCCCceeecccCCCCC--EEeehhh
Confidence 1157899999999987 77 457889999999999999999999999752 2223322 111212345 4577898
Q ss_pred CCCce-eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceE
Q 018243 209 LGAPV-GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRV 282 (359)
Q Consensus 209 ~g~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~ 282 (359)
++++. .|++++++++.+.+.. ...+.++..+++.++++...++...+ ...++..++.++|++.|+++ |.+.-
T Consensus 269 l~~G~pigav~~~~~i~~~~~~--~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 346 (425)
T PRK07495 269 LAGGFPLAAVTGRAEIMDAPGP--GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIAD 346 (425)
T ss_pred hcCCccceEEEEcHHHHhccCC--CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeee
Confidence 86433 2678888888877542 22445566677777777777755433 24455666667777766653 32221
Q ss_pred ecCCccceEEEEEeccch-----HHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITEDS-----KLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. ...+.++++.+..+. ......+.+.+.++|+.+.+.+ .+.+|+.++..++++++++++++|+++++++.
T Consensus 347 v--rG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 347 I--RGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred e--ecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 1 245788888875421 1124578888889999986543 47899999999999999999999999998764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=179.07 Aligned_cols=334 Identities=15% Similarity=0.156 Sum_probs=210.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC-Ccc---CCChHHHHHHHHHHHHhC----CC-CeEEc-CCchHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD-DVL---MHDPTAFRLETEMAKVMG----KE-AGLFV-PSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~----~~-~~~~~-~~gt~a~~~ 68 (359)
.++|||.++ +....+|.+.+++.+..... ... ...+...++.+.+++... .. ...++ +||++|+..
T Consensus 35 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~ 114 (412)
T TIGR02407 35 KEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVES 114 (412)
T ss_pred CEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHH
Confidence 367899876 33455699999998865431 111 124556677777877642 22 23454 799999999
Q ss_pred HHHHhhhhcC-CeEEec-CCCcceeeccccccccCC------------ccceeeecCCCCC---CCHHHHHHHhcCCCCC
Q 018243 69 SVLVHCETRG-SEVILG-DNSHIHIYENGGISTIGG------------VHPRTVKNNQDGT---MDIDLIEAAIRDPKGE 131 (359)
Q Consensus 69 ~l~~~~~~~g-~~vl~~-~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~---~~~~~l~~~l~~~~~~ 131 (359)
+++.+...+| .+|+.- ..+|..+.. + ....+ ..+..++.+.... -+++.+++.++++...
T Consensus 115 AlklAr~~tgr~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (412)
T TIGR02407 115 ALKLARKVTGRSNVVSFTNAFHGMTLG--S-LSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSG 191 (412)
T ss_pred HHHHHhhhcCCCeEEEECCCcCCchHH--H-HHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCC
Confidence 9999875444 346544 445544332 1 11111 0122233221110 1466788888643211
Q ss_pred ccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~ 208 (359)
.+++++|++++..+ ++|. ++|.+++++|+++|++||+++|+||++.. ++..|... ......+|++ +++|+
T Consensus 192 --~~~~aavi~Epi~g-~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~a~~~~~v~PDi~--~~~K~ 264 (412)
T TIGR02407 192 --VDLPAAVILETVQG-EGGINVASDEWLQRLEKLCRRHDILLIVDDIQAG--CGRTGTFFSFEPAGIEPDIV--CLSKS 264 (412)
T ss_pred --CCceEEEEeccccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchhHHhcccCCCCCEE--Eechh
Confidence 13678999988877 5777 67889999999999999999999999752 22222211 1122356765 45699
Q ss_pred CCC-cee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-H-HHhhhHHHHHHHHHHHHhc----CCCc
Q 018243 209 LGA-PVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-L-VMLDGDHKKAKLLAEGLNQ----LKGL 280 (359)
Q Consensus 209 ~g~-~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~l~~~l~~----~~g~ 280 (359)
+++ ... |+++.++++ +.+. ....+.++..+++.++++...++..+ + +..++..+..+++++.|+. .|++
T Consensus 265 lg~~G~pigav~~~~~~-~~~~--~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~ 341 (412)
T TIGR02407 265 ISGYGLPLALTLIKPEL-DVWK--PGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPEL 341 (412)
T ss_pred ccCCccceeEEEEchhh-hccC--CCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 874 322 667777665 4432 12334455555666666666665422 2 2445555666666666654 3333
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.. ..+..+.++++.++.. .....+.+.+.++||.+.+.+ .+.+|++++..++++++++++++|++++++
T Consensus 342 ~~-~vrg~Gl~~~l~l~~~--~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 342 IK-QVRGRGLMQGIECGDG--DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eE-eeecceeEEEEEecCh--HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 32 2245788889998752 356788999999999997644 468999999999999999999999998853
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-22 Score=177.94 Aligned_cols=336 Identities=15% Similarity=0.162 Sum_probs=218.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+..... ......+...++.+.+++.++. +...+++||++|+..|++.
T Consensus 54 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKl 133 (453)
T PRK06943 54 RRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKM 133 (453)
T ss_pred CEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHH
Confidence 367899887 44555699998888755432 1122456677888889888864 3568899999999999999
Q ss_pred hhhh------c-CCeEEecCC-CcceeeccccccccCCc------------cceeeecCCCCC------------CCHHH
Q 018243 73 HCET------R-GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDGT------------MDIDL 120 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~------------~~~~~ 120 (359)
+... + ..+|+.... +|..+.- + ....+. .+..++.+.... -+++.
T Consensus 134 A~~~~~~rg~~~r~~Ii~~~~~yHG~t~g--a-ls~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 210 (453)
T PRK06943 134 SFHAWRNRGRGDKREFVCLANGYHGETIG--A-LGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALAD 210 (453)
T ss_pred HHHHHHHhCCCCCCEEEEECCCcCCCcHH--h-hcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHH
Confidence 8421 1 245665554 4443321 1 111110 112222221100 02466
Q ss_pred HHHHhcCCCCCccCCceeEEEEecc-ccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhc
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENT-HANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQ 196 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~-~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~ 196 (359)
+++.+++.. .++.+|++++. ..+ +|. ..|.+++++++++|++||+++|+||++...... |.. ...+.-
T Consensus 211 l~~~l~~~~-----~~iAAviiEPvvqg~-gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt--G~~fa~~~~gv 282 (453)
T PRK06943 211 VRRLFAERA-----GKIAALIVEPLVQCA-AGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT--GTFFACEQAGV 282 (453)
T ss_pred HHHHHHhCC-----CceEEEEEecccccc-CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCC--cchhHHHhCCC
Confidence 777776321 57999999994 664 455 567799999999999999999999997433222 321 112223
Q ss_pred CccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 197 AADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
.+|++++ +|.+++ |. |.+++++++.+.+..-. ...++++..+++.++++...++...+ +..++..++.+
T Consensus 283 ~PDivt~--gKgl~gG~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~ 359 (453)
T PRK06943 283 WPDFLCL--SKGISGGYLPL-SLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSA 359 (453)
T ss_pred CCCeEee--ehhhccCcccc-eEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5777765 587754 33 55667888887764211 12455666678888888888876544 35566777777
Q ss_pred HHHHHHhcC---CCceEecCCccceEEEEEeccc---hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHH
Q 018243 269 LLAEGLNQL---KGLRVDVDAVETNIVYFEITED---SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 269 ~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~ 342 (359)
+|.+.|+++ |++.-. ...+.++.+.+..+ .......+.+.+.++|+.+.+.+ ..+|++++..+++++++++
T Consensus 360 ~l~~~L~~l~~~~~v~~v--rG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~ 436 (453)
T PRK06943 360 RLRAALAPLAAHPQVRHL--RQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWL 436 (453)
T ss_pred HHHHHHHHHhcCCCEEeE--eccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHH
Confidence 887777664 443311 34566666666421 11125678888899999997755 4799998889999999999
Q ss_pred HHHHHHHHHHHHh
Q 018243 343 LSCFQKIYAGVCE 355 (359)
Q Consensus 343 ~~~l~~~~~~~~~ 355 (359)
+++|+++++++..
T Consensus 437 ~~~l~~al~~~~~ 449 (453)
T PRK06943 437 AERTRATLDATLA 449 (453)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-22 Score=179.26 Aligned_cols=338 Identities=15% Similarity=0.156 Sum_probs=213.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--cc--CCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--VL--MHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.+++||.++ +....+|.+.+++.+...... .+ ...+...++.+.+++..+. +..++++||++|+..++.
T Consensus 41 ~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alk 120 (425)
T PRK08088 41 REYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVK 120 (425)
T ss_pred CEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHH
Confidence 357899876 333445888888877654321 11 1245556777788887764 345899999999999999
Q ss_pred Hhhhhc-CCeEEecCCCcceeeccccccccCCc-c------------cee--eecCCCCCCC----HHHHHHHhcCCCCC
Q 018243 72 VHCETR-GSEVILGDNSHIHIYENGGISTIGGV-H------------PRT--VKNNQDGTMD----IDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~~~-g~~vl~~~~~~~~~~~~~~~~~~~g~-~------------~~~--v~~~~~~~~~----~~~l~~~l~~~~~~ 131 (359)
.+.... ..+|+..+++|..... +. ....+. . +.. ++.+.++ .+ ++.+++.+++..
T Consensus 121 lar~~~~r~~iv~~~~~yHG~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~-- 195 (425)
T PRK08088 121 IARAATKRSGVIAFTGAYHGRTH-YT-LALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKNDA-- 195 (425)
T ss_pred HHHHHhCCCeEEEECCccCCccH-HH-HHhhCCCCccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhcc--
Confidence 876422 2345555665544432 11 111110 0 011 1111111 12 456777775210
Q ss_pred ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-hcCccEEEEeccccCC
Q 018243 132 IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-VQAADSASVCLSKGLG 210 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~d~~~~s~~K~~g 210 (359)
...++++|++++..++++....+.+++++|.++|++||+++|+||+|.. +...+.. ..+ ..+.+.-+.|++|.++
T Consensus 196 -~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g--~g~~g~~-~~~~~~~~~pdi~s~sK~l~ 271 (425)
T PRK08088 196 -APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG--AGRTGTL-FAMEQMGVAADLTTFAKSIA 271 (425)
T ss_pred -CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCcch-hHHhhcCCCCCEEEEecccc
Confidence 1157889999999998887888999999999999999999999999753 2222321 111 1122233568899997
Q ss_pred Ccee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHh----cCCCceEec
Q 018243 211 APVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLN----QLKGLRVDV 284 (359)
Q Consensus 211 ~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~----~~~g~~~~~ 284 (359)
.... |++++++++++.+... ....++..+++.++++...++.... +.+++..+..+++.+.|. ..|.+...
T Consensus 272 ~G~rig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v- 348 (425)
T PRK08088 272 GGFPLAGVTGRAEVMDAIAPG--GLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDV- 348 (425)
T ss_pred CCCcceeeEecHHHHhhcCCC--CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-
Confidence 4333 8899999998887533 2334444566777777777754322 233344444444444443 34433222
Q ss_pred CCccceEEEEEecc------chHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 285 DAVETNIVYFEITE------DSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 285 ~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+.++|+.+.. +.......+.+.+.++||.+.+.+ ...+|++++..++++++++++++|.+++++.
T Consensus 349 -~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 349 -RGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred -eccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 2348889998832 122457789999999999887654 3789999988899999999999999998754
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=178.55 Aligned_cols=340 Identities=15% Similarity=0.117 Sum_probs=215.3
Q ss_pred ccccccCC----CCCChHHHHHHHHHcCCCCCC----cc-CCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VL-MHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
++|||.++ +....+|.+.+++.+...... .+ ..++...++.+.++++++ .+.+++++||++|+..+++.
T Consensus 55 ~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~Aikl 134 (460)
T PRK12403 55 RYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRT 134 (460)
T ss_pred EEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHH
Confidence 57888665 455656888888887654321 11 246778899999999987 45678999999999999999
Q ss_pred hhh------hcCCeEEe--cCCCcceeeccccccccCCcc-----------ceeeecCCC----CCC--------CHHHH
Q 018243 73 HCE------TRGSEVIL--GDNSHIHIYENGGISTIGGVH-----------PRTVKNNQD----GTM--------DIDLI 121 (359)
Q Consensus 73 ~~~------~~g~~vl~--~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~~~----~~~--------~~~~l 121 (359)
+.. ++++.+++ ...+|.++.. + ....+.. +..++.+.. +.. +.+++
T Consensus 135 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~~--~-~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 211 (460)
T PRK12403 135 VRRYWQVLGKPQKKIMIGRWNGYHGSTLA--A-TALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQL 211 (460)
T ss_pred HHHHHHhhCCCCCcEEEEECCCcCcccHh--h-hhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHH
Confidence 863 12233433 3445666543 1 2222211 222221110 011 12456
Q ss_pred HHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCc
Q 018243 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAA 198 (359)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~ 198 (359)
++.+.+. +..++.+|++++..++ .|. ..+.+++++++++|++||+++|+||++... +..|... ..+.-.+
T Consensus 212 e~~~~~~----~~~~iaavI~Epv~g~-gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGf--GRtG~~~a~e~~gv~P 284 (460)
T PRK12403 212 EEKILEL----GAENVAGFVAEPFQGA-GGMIFPPESYWPEIQRICRQYDVLLCADEVIGGF--GRTGEWFAHEHFGFEP 284 (460)
T ss_pred HHHHHHh----CCCceEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC--CcCchhhhhhhcCCCC
Confidence 5555321 1146889999998884 465 456799999999999999999999998432 2223221 2222346
Q ss_pred cEEEEeccccCCC---ceeeEEecCHHHHHHHHHHHH--hhCCCcchhHHHHHHHHHHHHHhHHH-HhhhHH-HHHHHHH
Q 018243 199 DSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLRK--TLGGGMRQVGVLCAAALVALQENVLV-MLDGDH-KKAKLLA 271 (359)
Q Consensus 199 d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~l~ 271 (359)
|+++ ++|.+++ |.|+++ +++++.+.+..... .++.++..+++.++++...++...++ ..++.. ++.++|+
T Consensus 285 Div~--~gK~lggG~~Piga~v-~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~ 361 (460)
T PRK12403 285 DTLS--IAKGLTSGYVPMGGLV-LSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQ 361 (460)
T ss_pred CeEE--EcccccccccceEEEE-ECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7775 6788863 555655 67788777642111 24556667788888888888765442 455564 6677777
Q ss_pred HHHhcC-C--CceEecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHH
Q 018243 272 EGLNQL-K--GLRVDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339 (359)
Q Consensus 272 ~~l~~~-~--g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i 339 (359)
+.|+++ . ++.... ...+.++.+.+..+. ......+.+.+.++|+.+.+.+ ..+|+++...++++++
T Consensus 362 ~~L~~l~~~~~~i~~v-rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl~it~~ei 439 (460)
T PRK12403 362 RCLREVFGDHPLVGEV-QGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPALVAGRAEI 439 (460)
T ss_pred HHHHHHHhcCCCEEeE-eecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCCCCCHHHH
Confidence 777643 1 221111 345666666663210 0113345566788999997543 4689999888999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 018243 340 HYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~ 358 (359)
++++++++++++++.++.+
T Consensus 440 d~~~~~l~~al~~~~~~~~ 458 (460)
T PRK12403 440 DELVDKTRIAVDRTAREVG 458 (460)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999866544
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=177.06 Aligned_cols=288 Identities=19% Similarity=0.174 Sum_probs=199.3
Q ss_pred HHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhh-cCCeEEecCCCcceeeccccccccCCccceeeecCCCCC
Q 018243 41 FRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCET-RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 41 ~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 115 (359)
.++-+.+++++|.+. ++++++||++++.++.+++.. +...+++++.+|++..+ + +.+.|++++.|+.+.++.
T Consensus 136 ~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~K-A--a~llgi~~~~Vp~d~~g~ 212 (470)
T PLN02263 136 VGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK-A--ARMYRMECVKVDTLVSGE 212 (470)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHH-H--HHhcCCcceEeccCCCCc
Confidence 344455667778753 589999999999999999853 23468899999999887 4 888899999999999999
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCc-----EEEEecccccchhhhc-Cc
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL-----KLHIDGARIFNAAVAL-GV 189 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~-----~li~D~a~~~~~~~~~-~~ 189 (359)
+|++.|++.|++.. .++-+| +.+...+++|.+= ++++|.++|+++|+ |++||+|++....+.. ..
T Consensus 213 mD~~aL~~aI~~d~-----~~P~iV-vataGTT~~GAiD---pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 213 IDCADFKAKLLANK-----DKPAII-NVNIGTTVKGAVD---DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred CcHHHHHHHHHhCC-----CCcEEE-EEEecCCCCcCCC---CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence 99999999998421 123344 4477888889864 49999999999997 9999999643333221 11
Q ss_pred hhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhC------CCcch--hHHHHHHHHHHH-HHhHHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLG------GGMRQ--VGVLCAAALVAL-QENVLVM 259 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~l-~~~~~~~ 259 (359)
....+...+|.+++++|||++.|.+ |+++.++...+.+.....+.. .+.+. ..+..++.+..+ .+...+.
T Consensus 284 ~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~ 363 (470)
T PLN02263 284 PKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKE 363 (470)
T ss_pred cccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHH
Confidence 1122333589999999999999988 777776554433322111111 11111 122223333333 3445558
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHH
Q 018243 260 LDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339 (359)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i 339 (359)
.++..++++++.+.|++. ++.....| .++.+.|..+.. . +..+|..+... +..+++++.+.++.+.+
T Consensus 364 i~~~~~~A~~l~~~l~~~-g~~~~~~p-~s~~V~f~~p~~----~------~~~~gW~L~~~-~~~~Hivvmphv~~~~i 430 (470)
T PLN02263 364 VQKCLRNAHYLKDRLREA-GISAMLNE-LSSTVVFERPKD----E------EFVRRWQLACQ-GNIAHVVVMPSVTIEKL 430 (470)
T ss_pred HHHHHHHHHHHHHHHHhC-CCeEEeCC-CceEEEEecCch----H------HhhcceEEccC-CCcEEEEEcCCCCHHHH
Confidence 888889999999999998 88765544 566666654431 1 12467777553 35799999888899999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 340 HYTLSCFQKIYAGV 353 (359)
Q Consensus 340 ~~~~~~l~~~~~~~ 353 (359)
+++++.|++..+..
T Consensus 431 d~fi~DL~~~~~~~ 444 (470)
T PLN02263 431 DYFLKELVEKRSTW 444 (470)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998887643
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-22 Score=178.29 Aligned_cols=341 Identities=15% Similarity=0.068 Sum_probs=219.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---cc--CCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VL--MHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+...... .+ ...+...++.+.|++.++. +.+.+++||++|+..+++
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlK 127 (460)
T PRK06105 48 KRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVK 127 (460)
T ss_pred CEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence 367999886 445556899999887654321 11 1356667888999998854 356888999999999999
Q ss_pred Hhhhh------c-CCeEEe-cCCCcceeeccccccccCCc------------cceeeecCCCCCC-------------CH
Q 018243 72 VHCET------R-GSEVIL-GDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTM-------------DI 118 (359)
Q Consensus 72 ~~~~~------~-g~~vl~-~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~-------------~~ 118 (359)
.+... + ..+|+. ...+|..+.. + ....+. .+..++.+..... ..
T Consensus 128 lar~~~~~~g~t~r~~il~~~~~yHG~t~~--a-~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 204 (460)
T PRK06105 128 LVWYYNNALGRPEKKKIISRQRGYHGVTIA--S-ASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLA 204 (460)
T ss_pred HHHHHHHhcCCCCCcEEEEecCccCCcchh--h-eeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHH
Confidence 87521 1 235664 4555555432 1 121111 1111221111100 13
Q ss_pred HHHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhc
Q 018243 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQ 196 (359)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~ 196 (359)
+++++.+.+. +..++.+|++++...+ .|. ..|.+++++++++|++||+++|+||++. +|-.+. ......+.-
T Consensus 205 ~~le~~~~~~----~~~~iAavIvEPiqg~-gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~v 278 (460)
T PRK06105 205 NELEALILAE----GPDTIAAFIGEPVMGA-GGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFGI 278 (460)
T ss_pred HHHHHHHHHc----CCCceEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcCC
Confidence 5667766421 0146899999998874 455 5678999999999999999999999983 433321 111112222
Q ss_pred CccEEEEeccccCCCce--eeEEecCHHHHHHHHHHHH-----hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV--GSVIVGSKEFIKKARRLRK-----TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
.+|++ +++|.+++.. .|.+++++++.+.+..... .+++++..+++.++++...++...+ +..++..++.+
T Consensus 279 ~PDi~--~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~ 356 (460)
T PRK06105 279 KPDIL--VMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGA 356 (460)
T ss_pred CCCee--eeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56655 5568886531 3567778888877643211 1456667778888888888876544 35677778888
Q ss_pred HHHHHHhcCCCceE-ecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHH
Q 018243 269 LLAEGLNQLKGLRV-DVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAND 338 (359)
Q Consensus 269 ~l~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~ 338 (359)
+|++.|+++....+ ..-...+.++.+.+..+. ...+..+...+.++|+.+.+.+ +.+|++++..++++|
T Consensus 357 ~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~e 435 (460)
T PRK06105 357 RLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMG-DTLAFCPPLIITAAQ 435 (460)
T ss_pred HHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCccCHHH
Confidence 88888876522221 111235555556553210 1124578888899999997754 589999988899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018243 339 VHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 339 i~~~~~~l~~~~~~~~~ 355 (359)
++++++++.++++++..
T Consensus 436 id~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 436 VDEMVDRFGRALDDVAA 452 (460)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-22 Score=177.60 Aligned_cols=334 Identities=16% Similarity=0.141 Sum_probs=214.1
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc--c--CCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV--L--MHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.+++||.++ +....+|.+.+++.+....... + ...+...++.+.++++++. +...+++||++|+..+++
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~Alk 119 (421)
T PRK06777 40 REYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVK 119 (421)
T ss_pred CEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHH
Confidence 357898876 3345568888888876543221 1 2355667888888888753 456889999999999999
Q ss_pred HhhhhcCC-eEEecC-CCcceeeccccccccCCc-------------cceeeecCCC-CC----CCHHHHHHHhcCCCCC
Q 018243 72 VHCETRGS-EVILGD-NSHIHIYENGGISTIGGV-------------HPRTVKNNQD-GT----MDIDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~~~g~-~vl~~~-~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~-~~----~~~~~l~~~l~~~~~~ 131 (359)
.+....|. +|+..+ .+|+.+.. + ....+. .+..++.+.. .. -+++.+++.+++..
T Consensus 120 lAr~~tgr~~ii~~~~~yHG~t~~--~-~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-- 194 (421)
T PRK06777 120 IARAYTGRPGVIAFGGAFHGRTLL--T-MALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-- 194 (421)
T ss_pred HHHHhhCCCeEEEEcCCcCCccHH--H-HhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc--
Confidence 88754443 455444 45544332 1 111111 0111221111 10 13566777775210
Q ss_pred ccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~ 208 (359)
+..++++|++++..+ .+|. +++.+++++|.++|++||+++|+||+|.. +...+.. ...+...+|++ +++|.
T Consensus 195 -~~~~iaavi~Epv~~-~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg--~gr~g~~~~~~~~~~~pDiv--~~sK~ 268 (421)
T PRK06777 195 -APDQVAAILLEPIQG-EGGFNVAPPEFMSALRTLCDEHGILLIADEVQTG--FARTGKLFAMEYYDVKPDLI--TMAKS 268 (421)
T ss_pred -CCCceEEEEECCccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CccCCchhhhhhcCCCCCEE--eeehh
Confidence 115688999998876 5675 67889999999999999999999999753 2223321 12222245654 67899
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceE
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRV 282 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~ 282 (359)
+++... |++++++++++.+... ..+.++..+++.++++..+++...+ +..++..++.++|++.|+++ |.+..
T Consensus 269 l~~G~pigav~~~~~i~~~~~~~--~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 346 (421)
T PRK06777 269 LGGGMPISAVVGRAEVMDAPAPG--GLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD 346 (421)
T ss_pred hcCCCceEEEEEcHHHHhccCCC--CCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 974322 7788888888776432 2345555677778888888864332 36667777788888888764 33322
Q ss_pred ecCCccceEEEEEeccc-----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITED-----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
. ...+.++.+.+..+ ...-...+.+.+.++||.+.+++ .+++|+.++...+++++++++++|++++.
T Consensus 347 v--rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 347 I--RARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred e--cCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 2 23555555544321 01124556667788999998865 36899999889999999999999998864
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=177.40 Aligned_cols=336 Identities=15% Similarity=0.107 Sum_probs=221.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--c--cCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--V--LMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +....+|++.+++.+...... . ....+...++.+.+++.++ .+...+++||++|+..+++.
T Consensus 44 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Alkl 123 (429)
T PRK06173 44 RRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKM 123 (429)
T ss_pred CEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHH
Confidence 357898876 444556889888887554321 1 1235667888888888875 34568899999999999998
Q ss_pred hhhh------cC-CeEEecCC-CcceeeccccccccCCc-------------cceeeecCCCC------CCCHHHHHHHh
Q 018243 73 HCET------RG-SEVILGDN-SHIHIYENGGISTIGGV-------------HPRTVKNNQDG------TMDIDLIEAAI 125 (359)
Q Consensus 73 ~~~~------~g-~~vl~~~~-~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~------~~~~~~l~~~l 125 (359)
+..- ++ .+|+.-.. .|..++. + ....+. .+..++.+... .-+++.+++.+
T Consensus 124 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i 200 (429)
T PRK06173 124 ALQYQQAKGEVQRTKFATIRSGYHGDTWH--A-MSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLL 200 (429)
T ss_pred HHHHHHHhCCCCCcEEEEECCCcCCcchh--h-hccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHH
Confidence 8742 22 35664444 5544332 1 111110 11122211110 01356677777
Q ss_pred cCCCCCccCCceeEEEEecc-ccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEE
Q 018243 126 RDPKGEIVYPTTRLICLENT-HANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSA 201 (359)
Q Consensus 126 ~~~~~~~~~~~~~~v~i~~~-~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~ 201 (359)
++.. .++.+|++++. .. .+|.. +|.+++++++++|++||+++|+||+| .| ++..|... ..+...+|++
T Consensus 201 ~~~~-----~~iAAvi~EPi~qg-~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG-~GrtG~~~a~~~~gv~PDiv 272 (429)
T PRK06173 201 EQKG-----DEIAALILEPVVQG-AGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TG-FGRTGKLFALEHAGVVPDIM 272 (429)
T ss_pred HhCC-----CcEEEEEEcchhhc-cCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cC-CCcCCcchHHHhcCCCCCEE
Confidence 6321 57999999986 55 34654 67799999999999999999999998 44 33334332 2222356766
Q ss_pred EEeccccCCCce--eeEEecCHHHHHHHHHHH---HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHh
Q 018243 202 SVCLSKGLGAPV--GSVIVGSKEFIKKARRLR---KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLN 275 (359)
Q Consensus 202 ~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~ 275 (359)
+ ++|.+++.. .+.++.++++.+.+.... ..++.++..++..++++..+++...+ ..+++..++.++|++.|+
T Consensus 273 ~--~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~ 350 (429)
T PRK06173 273 C--IGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELA 350 (429)
T ss_pred E--eehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5 679885432 255777888877764211 12445555678888888888876543 356677788888888887
Q ss_pred cCCCceEe-cCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 276 QLKGLRVD-VDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 276 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.++... .-...+.++.+.+..+ .+...+.+.|.++||.+.+.+ ..+|+.++..++++++++++++|++++.++-
T Consensus 351 ~~~~~~~v~~vRg~Gl~~~iel~~~--~~~~~i~~~l~e~Gi~v~~~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 351 PAAEFDSVAEVRVLGAIGVVEMKEP--VNMATLQPRFVEHGIWVRPFG-KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred HhhcCCCeeeeeccceEEEEEeCCc--ccHHHHHHHHHHCCeEEEecC-CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 54223211 1124677777777652 246788899999999997765 5999999999999999999999999998753
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-22 Score=177.85 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=214.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCCC----CeEE-cCCchHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGKE----AGLF-VPSGTMGNLIS 69 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~----~~~~-~~~gt~a~~~~ 69 (359)
.++|||.++ +....+|++.+++.+...... .+..++...++.+.+++.++.. ..++ ++||++|+..+
T Consensus 39 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~A 118 (442)
T TIGR00709 39 KEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAA 118 (442)
T ss_pred CEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHH
Confidence 357899887 334556999999887554311 1234567788888898887532 3344 48999999999
Q ss_pred HHHhhhhcC-CeEEecCC-CcceeeccccccccCC-------c-----cceeeecCCCCCC--------CH----HHHHH
Q 018243 70 VLVHCETRG-SEVILGDN-SHIHIYENGGISTIGG-------V-----HPRTVKNNQDGTM--------DI----DLIEA 123 (359)
Q Consensus 70 l~~~~~~~g-~~vl~~~~-~~~~~~~~~~~~~~~g-------~-----~~~~v~~~~~~~~--------~~----~~l~~ 123 (359)
++.+..-.| .+|+.... +|..+.. + ....+ . .+..++.+..... +. +.+++
T Consensus 119 lklAr~~tgr~~Ii~~~~~yHG~t~~--~-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (442)
T TIGR00709 119 IKLAKTYTGRTNVISFSGGFHGMTIG--A-LAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFEN 195 (442)
T ss_pred HHHHHHhcCCCeEEEEcCCcCCchHH--H-HhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 998875444 34665444 4444322 1 21111 0 1222222211111 11 12333
Q ss_pred HhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEE
Q 018243 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSA 201 (359)
Q Consensus 124 ~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~ 201 (359)
.+++... ...++.+|++++..++++..++|.+++++++++|++||+++|.||++..... .+.. ...+...+|++
T Consensus 196 ~~~~~~~--~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR--tG~~~a~~~~gv~PDiv 271 (442)
T TIGR00709 196 FIEDVES--GVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGR--SGTMFAFEHAGIEPDFV 271 (442)
T ss_pred HHHhhcc--CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC--CCchhHHHHcCCCCcEE
Confidence 4431110 1146889999999987766678999999999999999999999999753222 2321 22232356766
Q ss_pred EEeccccCCC--ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-
Q 018243 202 SVCLSKGLGA--PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL- 277 (359)
Q Consensus 202 ~~s~~K~~g~--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~- 277 (359)
+ ++|.+++ |. |+++.++++ +.+. ....+.++..+++.++++..+++...+ +..++..++.++|.+.|+++
T Consensus 272 ~--~gK~l~~G~Pi-gav~~~~~~-~~~~--~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~ 345 (442)
T TIGR00709 272 V--MSKAVGGGLPL-AVLLIAPEF-DAWQ--PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMI 345 (442)
T ss_pred E--EcccccCCccc-EEEEEchHH-hccC--CCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6 5688754 34 445566663 4432 123456666778888888888876443 35566777788888887763
Q ss_pred ---CCceEecCCccceEEEEEeccch------------HHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHH
Q 018243 278 ---KGLRVDVDAVETNIVYFEITEDS------------KLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVH 340 (359)
Q Consensus 278 ---~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~ 340 (359)
|.+. .. ...+.++.+.+..+. ......+...+.++|+.+.+.+ .+.+|+.++..+++++++
T Consensus 346 ~~~~~v~-~v-rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~ 423 (442)
T TIGR00709 346 KEHPCIG-NV-RGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECE 423 (442)
T ss_pred HhCCCee-ee-eccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHH
Confidence 2221 11 345666666664310 1124567788889999986643 578999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 018243 341 YTLSCFQKIYAGVCEE 356 (359)
Q Consensus 341 ~~~~~l~~~~~~~~~~ 356 (359)
+++++++++++++.++
T Consensus 424 ~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 424 EGISRFKQAVEEALAE 439 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887554
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-22 Score=177.46 Aligned_cols=340 Identities=18% Similarity=0.134 Sum_probs=217.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+....... ...++...++.+.+++.++. +.+.+++||++|+..+++.
T Consensus 52 ~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~Alkl 131 (460)
T PRK06541 52 KRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKL 131 (460)
T ss_pred CEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHH
Confidence 357899886 4445569999888876543211 12356667888888888753 4568899999999999998
Q ss_pred hhhh---c----CCeEEec-CCCcceeeccccccccCCc------------cceeeecCCCC-----CCC--------HH
Q 018243 73 HCET---R----GSEVILG-DNSHIHIYENGGISTIGGV------------HPRTVKNNQDG-----TMD--------ID 119 (359)
Q Consensus 73 ~~~~---~----g~~vl~~-~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~-----~~~--------~~ 119 (359)
+... . ..+|+.- ..+|+.+.. + ....+. .+..++.+... .-+ ++
T Consensus 132 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (460)
T PRK06541 132 AKQYFKLTGKPGKHKVISRAIAYHGTTQG--A-LAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAAD 208 (460)
T ss_pred HHHHHHhcCCCCccEEEEEcCcccCcchh--h-hcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHH
Confidence 8642 1 2456644 445544432 1 111111 11222211111 012 35
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEeccc-ccchhhhcCchhHhhhcC
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGAR-IFNAAVALGVPVRRLVQA 197 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~-~~~~~~~~~~~~~~~~~~ 197 (359)
.+++.+++. +..++.+|++++..+ ++|... |.+++++|+++|++||+++|+||+| ++|-.+.. .....+...
T Consensus 209 ~l~~~l~~~----~~~~~Aavi~EPv~g-~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~-~a~~~~gv~ 282 (460)
T PRK06541 209 RIEEAIEFE----GPDTVAAVFLEPVQN-AGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEM-FGCERFGYV 282 (460)
T ss_pred HHHHHHHhc----CCCCEEEEEECCccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchh-hhhhhcCCC
Confidence 677777531 114688899988776 677765 4799999999999999999999998 44432211 111112224
Q ss_pred ccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH-H-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHH
Q 018243 198 ADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR-K-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLA 271 (359)
Q Consensus 198 ~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~ 271 (359)
+|++ +++|.+++ |.|+ +++++++++.+.... . ..++++..++..++++...++...+ ...++..++.++|.
T Consensus 283 PDiv--t~gK~l~~G~~piga-v~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~ 359 (460)
T PRK06541 283 PDII--TCAKGITSGYSPLGA-MIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFR 359 (460)
T ss_pred CCEE--EecccccCCccceeE-EEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6765 57798874 4444 666777777764321 1 2345666777888888888876433 36677888888999
Q ss_pred HHHhcCCCceEe-cCCccceEEEEEeccch--------H----HHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCH
Q 018243 272 EGLNQLKGLRVD-VDAVETNIVYFEITEDS--------K----LYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISA 336 (359)
Q Consensus 272 ~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~ 336 (359)
+.|+++....+. .-...+.++.+.+..+. . .....+.+.|.++||.+.+. +...+|++++..+++
T Consensus 360 ~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~ 439 (460)
T PRK06541 360 ATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQ 439 (460)
T ss_pred HHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCH
Confidence 888876222211 11235666666653210 0 01135677888999999763 457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~~~ 354 (359)
+|+++++++|+++++++.
T Consensus 440 ~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 440 EEFDEIEQILRSVLTEAW 457 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-22 Score=177.05 Aligned_cols=338 Identities=18% Similarity=0.163 Sum_probs=213.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCC-CeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKE-AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~-~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.++++++.. ...+++||++|+..+++.+.
T Consensus 47 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr 126 (451)
T PRK07678 47 NRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIAR 126 (451)
T ss_pred CEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 357899876 3445558998888775543221 123566678888999988654 45788999999999999886
Q ss_pred hh------cC-CeEEecCC-CcceeeccccccccCCc------------cceeeecCCCCCC---------C---HHHHH
Q 018243 75 ET------RG-SEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDGTM---------D---IDLIE 122 (359)
Q Consensus 75 ~~------~g-~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~---------~---~~~l~ 122 (359)
.- ++ .+|+.... +|..+.. + ....+. .+..++.+..... + ++.++
T Consensus 127 ~~t~~~g~~~r~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (451)
T PRK07678 127 QYHAQKGEPHRYKFISRYRAYHGNSMG--A-LAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEID 203 (451)
T ss_pred HHHHhcCCCCCcEEEEECCCcCCccHH--H-hhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHH
Confidence 42 12 45665444 4444322 1 111110 1122222111110 1 22355
Q ss_pred HHhcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhcCccE
Q 018243 123 AAIRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQAADS 200 (359)
Q Consensus 123 ~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~~~d~ 200 (359)
+.++.. +.+++.+|++++...+ .|.. .+.+++++++++|++||+++|+||++. +|-.+.. .....+.-.+|+
T Consensus 204 ~~~~~~----~~~~iAAvi~EPiqg~-gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~-~~~~~~gv~PDi 277 (451)
T PRK07678 204 RVMTWE----LSETIAAVIMEPIITG-GGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKA-FGFMNYGVKPDI 277 (451)
T ss_pred HHHHhc----CCCceEEEEEccccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchh-HHHHhcCCCCCE
Confidence 566421 1157999999998875 4554 667999999999999999999999974 3222210 011122235676
Q ss_pred EEEeccccCCC---ceeeEEecCHHHHHHHHHHH----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHH
Q 018243 201 ASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAE 272 (359)
Q Consensus 201 ~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~ 272 (359)
+ +++|.+|+ |. |.+++++++.+.+.... ...++|+..++..++++...++...+ ...++..++.++|++
T Consensus 278 v--t~gK~lggG~~Pi-~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 354 (451)
T PRK07678 278 I--TMAKGITSAYLPL-SATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLE 354 (451)
T ss_pred E--EeecccccCCcce-eEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6 44688864 33 55777888887764211 13566777788888998888876544 245566666677777
Q ss_pred HHhcC-C--CceEecCCccceEEEEEeccc-------hHHHHHHHHHHHHhcCceeccC------CCcEEEEEeCCCCCH
Q 018243 273 GLNQL-K--GLRVDVDAVETNIVYFEITED-------SKLYAACLLKKLEEHGVLVMPE------SSTRVRIVVHHQISA 336 (359)
Q Consensus 273 ~l~~~-~--g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~~~~~------~~~~lRi~~~~~~~~ 336 (359)
.|+++ . ++.... ...+.++.+.+..+ +......+.+.|.++||.+.+. +...+|++++..+++
T Consensus 355 ~l~~~~~~~~~v~~v-rg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~ 433 (451)
T PRK07678 355 QLKEELGEHPLVGDI-RGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISS 433 (451)
T ss_pred HHHHHHhcCCCEEEE-EeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCH
Confidence 66542 1 221111 23566666666321 1123567888899999998653 247899999989999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~~ 353 (359)
+|++++++++.++++++
T Consensus 434 ~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 434 EEIAFIVGTLKTALERI 450 (451)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998765
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=177.91 Aligned_cols=333 Identities=17% Similarity=0.127 Sum_probs=217.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--c--cCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--V--LMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +...-+|++.+++.+...... . ....+...++.+.+++.++. +...+++||++|+..+++.
T Consensus 43 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~Alkl 122 (428)
T PRK07986 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKM 122 (428)
T ss_pred CEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHH
Confidence 357899886 344555899988887654321 1 12456678888888888754 4568899999999999998
Q ss_pred hhhh------cCCeEEecCC-CcceeeccccccccCCc-------------cceeeecCCCC------CCCHHHHHHHhc
Q 018243 73 HCET------RGSEVILGDN-SHIHIYENGGISTIGGV-------------HPRTVKNNQDG------TMDIDLIEAAIR 126 (359)
Q Consensus 73 ~~~~------~g~~vl~~~~-~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~------~~~~~~l~~~l~ 126 (359)
+..- ...+|+.-.. +|+.+.. + ....+- .+..++..... .-|++++++.++
T Consensus 123 Ar~~~~~~g~~r~kii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~ 199 (428)
T PRK07986 123 ALQYWQAKGEPRQRFLTLRHGYHGDTFG--A-MSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMA 199 (428)
T ss_pred HHHHHHhcCCCCcEEEEECCCcCCCcHh--h-hcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHH
Confidence 8741 2345665554 4443322 1 111110 11122211110 115677888886
Q ss_pred CCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEE
Q 018243 127 DPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASV 203 (359)
Q Consensus 127 ~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~ 203 (359)
+.. .++.+|++++.....+|+ .++.+++++|+++|++||+++|+||+|. |. +..|... ..+.-.+|++
T Consensus 200 ~~~-----~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~t-G~-GrtG~~fa~~~~gv~PDi~-- 270 (428)
T PRK07986 200 AHR-----HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIAT-GF-GRTGKLFACEHAGIAPDIL-- 270 (428)
T ss_pred hCC-----CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CC-ccCCCeeeecccCCCCCEE--
Confidence 321 468899998863324565 4566999999999999999999999983 32 3333221 1222256766
Q ss_pred eccccCCCc-ee-eEEecCHHHHHHHHHHH---HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC
Q 018243 204 CLSKGLGAP-VG-SVIVGSKEFIKKARRLR---KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 204 s~~K~~g~~-~g-g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~ 277 (359)
+++|.+++. .. +.+++++++.+.+.... ...+.++..+++.++++...++...+ +.+++..++.++|++.|+++
T Consensus 271 t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l 350 (428)
T PRK07986 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPL 350 (428)
T ss_pred EechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 467988543 12 55677888888875321 12455666678888888888875543 35667777788888888765
Q ss_pred ---CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 278 ---KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 278 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
|.+.-. ...+.++.+.+..+ .....+.+.|.++|+.+.+.+ ..+|+.++..++++++++++++|.+++++
T Consensus 351 ~~~~~i~~v--Rg~Gl~~~ve~~~~--~~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 351 RDAPMVADV--RVLGAIGVVETTRP--VNMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred hcCCCEEeE--eccceEEEEEeCCc--ccHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 222211 33566666777542 245688899999999997765 68999999999999999999999998854
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-22 Score=176.16 Aligned_cols=338 Identities=15% Similarity=0.170 Sum_probs=211.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC-Cc---cCCChHHHHHHHHHHHHhC----CC-CeEEc-CCchHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD-DV---LMHDPTAFRLETEMAKVMG----KE-AGLFV-PSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~-~~---~~~~~~~~~l~~~la~~~~----~~-~~~~~-~~gt~a~~~ 68 (359)
.++|||.++ +....+|.+.+++.+..... .. ....+...++.+.+++.+. .+ ...++ +||++|+..
T Consensus 39 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~ 118 (425)
T PRK09264 39 KEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEA 118 (425)
T ss_pred CEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHH
Confidence 367899887 33455599999997754421 11 1234556777788887652 22 23454 799999999
Q ss_pred HHHHhhhhcCC-eEEecC-CCcceeeccccccc------c--CC---ccceeeecCCCC--C-CCHHHHHHHhcCCCCCc
Q 018243 69 SVLVHCETRGS-EVILGD-NSHIHIYENGGIST------I--GG---VHPRTVKNNQDG--T-MDIDLIEAAIRDPKGEI 132 (359)
Q Consensus 69 ~l~~~~~~~g~-~vl~~~-~~~~~~~~~~~~~~------~--~g---~~~~~v~~~~~~--~-~~~~~l~~~l~~~~~~~ 132 (359)
+++.+..-+|. +|+... .+|+.+.. ++.. . .+ ..+..++.+... . -|++++++.+++....
T Consensus 119 AlklAr~~tgr~~ii~~~~~yHG~t~~--~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~- 195 (425)
T PRK09264 119 ALKLARKVTGRTNIVAFTNGFHGMTLG--SLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSG- 195 (425)
T ss_pred HHHHHHHhcCCCeEEEECCccCCccHH--HHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCC-
Confidence 99998754443 455444 45544332 1110 0 01 022333332111 0 2677888888643111
Q ss_pred cCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccC
Q 018243 133 VYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGL 209 (359)
Q Consensus 133 ~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~ 209 (359)
.+++.+|++++..++ +|. +++.+++++|+++|++||+++|+||+|.. ++..|... ......+|++ +++|.+
T Consensus 196 -~~~~aavi~Epv~g~-~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--~GrtG~~~~~~~~~v~PDi~--t~~K~l 269 (425)
T PRK09264 196 -VDLPAAVIVETVQGE-GGINVASAEWLQRLAKLCRKHDILLIVDDIQAG--CGRTGTFFSFERAGITPDIV--TLSKSI 269 (425)
T ss_pred -CCceEEEEEecccCC-CCCcCCCHHHHHHHHHHHHHcCcEEEEechhhC--CccccHHHHHhhcCCCCCEE--Eecccc
Confidence 136889999998884 565 56789999999999999999999999853 22223221 1122256755 556988
Q ss_pred CC-cee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-H-HHhhhHHHHHHHHHHHHhcC----CCce
Q 018243 210 GA-PVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-L-VMLDGDHKKAKLLAEGLNQL----KGLR 281 (359)
Q Consensus 210 g~-~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~l~~~l~~~----~g~~ 281 (359)
+. ... |+++.++++ ..+. ....+.++..++...+++..+++... + +..++..++.++|++.|+++ |.+.
T Consensus 270 ~~~G~pigav~~~~~i-~~~~--~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~ 346 (425)
T PRK09264 270 SGYGLPMALVLIKPEL-DVWK--PGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLG 346 (425)
T ss_pred CCCccceEEEEEchhh-hccC--CCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 64 221 666777665 3322 11234444445555666666663322 2 35566667777777776653 2221
Q ss_pred EecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 282 VDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
. ..+..+.++++.+... .....+.+.+.++||.+.+.+ ...||++++..++++++++++++|+++++++.+
T Consensus 347 ~-~vrg~Gl~~~i~l~~~--~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~ 419 (425)
T PRK09264 347 A-EVRGRGMMQGIDFGDG--ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419 (425)
T ss_pred e-cceecccEEEEEecCh--HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 1234677778888652 356788999999999997654 468999998889999999999999999988754
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-22 Score=175.77 Aligned_cols=329 Identities=14% Similarity=0.123 Sum_probs=214.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC--cc--CCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD--VL--MHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +....+|++.+++.+...... .+ ..++...++.+.+++..+ .+...+++||++|+..|++.
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~Alkl 119 (422)
T PRK05630 40 STVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKM 119 (422)
T ss_pred CEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHH
Confidence 357899876 445556899988887654321 11 235667788888988874 34678999999999999998
Q ss_pred hhhh------c-CCeEEecCC-CcceeeccccccccCCc-------------cceeeecCCCCCCC-------HHHHHHH
Q 018243 73 HCET------R-GSEVILGDN-SHIHIYENGGISTIGGV-------------HPRTVKNNQDGTMD-------IDLIEAA 124 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~-~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-------~~~l~~~ 124 (359)
+..- + ..+|+.-.. +|..+.. + ....+- ....++.+.....+ .+.+++.
T Consensus 120 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 196 (422)
T PRK05630 120 ALQYSKGQGHPERTRLLTWRSGYHGDTFA--A-MSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELL 196 (422)
T ss_pred HHHHHHhcCCCCCcEEEEECCCcCCccHH--H-hccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHH
Confidence 7642 1 235665554 4443322 1 111110 11222222111111 2334444
Q ss_pred hcCCCCCccCCceeEEEEecc-ccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccE
Q 018243 125 IRDPKGEIVYPTTRLICLENT-HANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADS 200 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~-~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~ 200 (359)
++ .++.+|++++. .. .+|+ ..+.+++++++++|++||+++|+||++... +..|.... .....+|+
T Consensus 197 ~~--------~~iAAvi~EPi~qg-~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~--GrtG~~~a~~~~gv~PDi 265 (422)
T PRK05630 197 ID--------ETVAAIIIEPIVQG-AGGMRFHDVALIEGVRTLCDKHDILLIADEIATGF--GRTGELFATLAAGVTPDI 265 (422)
T ss_pred Hh--------hceEEEEEechhcC-cCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCC--CcCchhhHHHhcCCCCCe
Confidence 44 57999999985 55 4566 456799999999999999999999997422 22333211 22235666
Q ss_pred EEEeccccCCC--ceeeEEecCHHHHHHHHHH----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHH
Q 018243 201 ASVCLSKGLGA--PVGSVIVGSKEFIKKARRL----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEG 273 (359)
Q Consensus 201 ~~~s~~K~~g~--~~gg~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~ 273 (359)
+ +++|.+++ +..|++++++++.+.+... ...++.++..++..++++..+++...+ ..+++..++.++|++.
T Consensus 266 ~--t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~ 343 (422)
T PRK05630 266 M--CVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAG 343 (422)
T ss_pred e--eeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 6 66798844 2346677888888876421 112456666778888888888865543 2445666777777777
Q ss_pred HhcC---CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 274 LNQL---KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 274 l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
|+++ |.+.-. ...+.++.+.+..+ ..+..+.+.+.++|+.+.+.+ +.+|+.++..++++++++++++|++++
T Consensus 344 L~~l~~~~~v~~v--Rg~Gl~~~ie~~~~--~~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al 418 (422)
T PRK05630 344 LSPLAHLPGVADV--RVLGAIGVVEMEQP--VDMEEATQAAVDHGVWLRPFG-RLVYVMPPYITTSEQIAQICAALAAAV 418 (422)
T ss_pred HHHhhcCCCeeee--eccccEEEEEECCc--ccHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 7653 322211 34677777777642 235678888999999997765 789999999999999999999999988
Q ss_pred HH
Q 018243 351 AG 352 (359)
Q Consensus 351 ~~ 352 (359)
+.
T Consensus 419 ~~ 420 (422)
T PRK05630 419 KA 420 (422)
T ss_pred hc
Confidence 64
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=176.70 Aligned_cols=340 Identities=13% Similarity=0.038 Sum_probs=216.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---c--CCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---L--MHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+....... + ..++...++.+.+++.++ .+.+.+++||++|+..+++
T Consensus 50 ~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlK 129 (461)
T PRK07482 50 RRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIK 129 (461)
T ss_pred CEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHH
Confidence 367999987 3345568999998876543221 1 235667888888888874 3456899999999999999
Q ss_pred Hhhhh------c-CCeEEecC-CCcceeeccccccccCCc------------cceeeecCCCCC-------------CCH
Q 018243 72 VHCET------R-GSEVILGD-NSHIHIYENGGISTIGGV------------HPRTVKNNQDGT-------------MDI 118 (359)
Q Consensus 72 ~~~~~------~-g~~vl~~~-~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~-------------~~~ 118 (359)
.+... + ..+|+... .+|+.+.- + ....+. .+..++.+.... -++
T Consensus 130 lAr~~~~~~g~~~r~~Ii~~~~~YHG~t~g--a-~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 206 (461)
T PRK07482 130 LVWYYNNVLGRPEKKKIISRWRGYHGSGVV--T-GSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCA 206 (461)
T ss_pred HHHHHHHhcCCCCCceEEEecCccCCccHh--h-hhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHH
Confidence 98631 1 23566544 45443321 1 111110 111121111000 035
Q ss_pred HHHHHHhcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcC
Q 018243 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQA 197 (359)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 197 (359)
+.+++.+.+. +.+++.+|++++...+ .|+. .+.+++++|+++|++||+++|+||++..............+.-.
T Consensus 207 ~~l~~~~~~~----~~~~iAAvi~EPvqg~-gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~ 281 (461)
T PRK07482 207 DELEELILAE----GPDTIAAFIAEPVLGT-GGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE 281 (461)
T ss_pred HHHHHHHHhc----CCCcEEEEEECCccCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC
Confidence 6677777421 1146899999998875 4565 66799999999999999999999997533222111111222235
Q ss_pred ccEEEEeccccCCC---ceeeEEecCHHHHHHHHHH-----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 198 ADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRL-----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 198 ~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
+|++++ +|.+++ |.++ +++++++.+.+... ....++++..+++.++++...++...+ ...++..++.+
T Consensus 282 PDiv~~--gKgl~gG~~Pi~a-v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~ 358 (461)
T PRK07482 282 PDLITV--AKGLTSAYAPLSG-SIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGA 358 (461)
T ss_pred CCEEEE--ccccccCccccce-eeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 677755 588854 4444 56677777765421 113556677788888888888876544 34566667777
Q ss_pred HHHHHHhc----CCCceEecCCccceEEEEEeccch--------H-HHHHHHHHHHHhcCceeccC-CCcEEEEEeCCCC
Q 018243 269 LLAEGLNQ----LKGLRVDVDAVETNIVYFEITEDS--------K-LYAACLLKKLEEHGVLVMPE-SSTRVRIVVHHQI 334 (359)
Q Consensus 269 ~l~~~l~~----~~g~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~l~~~gi~~~~~-~~~~lRi~~~~~~ 334 (359)
+|.+.|++ .|.+. .. ...+.++.+.+..+. . .....+...|.++|+.+.+. ..+.+|+.++..+
T Consensus 359 ~l~~~L~~l~~~~~~v~-~v-rG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~i 436 (461)
T PRK07482 359 YFRARLRAAFGDHPLVG-EV-RGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVL 436 (461)
T ss_pred HHHHHHHHHHhcCCCEE-EE-eeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCC
Confidence 77777764 32221 11 345666666664210 0 12457888889999998543 3578999998899
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 018243 335 SANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+++|+++++++++++++++.+
T Consensus 437 t~~ei~~~~~~l~~~l~~~~~ 457 (461)
T PRK07482 437 TRAEADEIVAIAKDAVDEVLG 457 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=175.87 Aligned_cols=344 Identities=14% Similarity=0.076 Sum_probs=218.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----cc-CCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VL-MHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+...... .+ ..++...++.+.+++.+. .+.+++++||++|+..|++
T Consensus 46 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlK 125 (459)
T PRK05965 46 HQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVR 125 (459)
T ss_pred CEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHH
Confidence 367999886 444556899998887654321 11 125666788888988874 3456788999999999999
Q ss_pred Hhhhh------c-CCeEEecC-CCcceeecccccc------ccCC---ccceeeecCC--CC--CCC--------HHHHH
Q 018243 72 VHCET------R-GSEVILGD-NSHIHIYENGGIS------TIGG---VHPRTVKNNQ--DG--TMD--------IDLIE 122 (359)
Q Consensus 72 ~~~~~------~-g~~vl~~~-~~~~~~~~~~~~~------~~~g---~~~~~v~~~~--~~--~~~--------~~~l~ 122 (359)
.++.- + ..+|+.-. .+|+.+....... ...+ ..+..++.+. .. .-| ++.++
T Consensus 126 lAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (459)
T PRK05965 126 FIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALR 205 (459)
T ss_pred HHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHH
Confidence 87642 2 23566444 4454432100000 0011 0112222111 10 112 25677
Q ss_pred HHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEE
Q 018243 123 AAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSA 201 (359)
Q Consensus 123 ~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~ 201 (359)
+.+++.. .+++.+|++++...+ +|. +.|.+++++++++|++||+++|+||++..............+...+|++
T Consensus 206 ~~i~~~~----~~~iAAvIvEPiqg~-gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv 280 (459)
T PRK05965 206 AKVAELG----ADNVAAFFCEPIQGS-GGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLM 280 (459)
T ss_pred HHHHhcC----CCceEEEEEeccccC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeE
Confidence 7776321 147899999998874 455 5677999999999999999999999975332221111122222356766
Q ss_pred EEeccccCCC---ceeeEEecCHHHHHHHHHH-----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHH
Q 018243 202 SVCLSKGLGA---PVGSVIVGSKEFIKKARRL-----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAE 272 (359)
Q Consensus 202 ~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~ 272 (359)
++ +|.+++ |. |.+++++++.+.+..- ....++++..+++.++++...++...+ +..++..++.++|.+
T Consensus 281 ~~--gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~ 357 (459)
T PRK05965 281 TV--AKGLTSGYVPM-GAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAA 357 (459)
T ss_pred Ee--chhhccCCcce-eEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55 587754 34 4466788888776421 113566777788888888888876644 355677778888888
Q ss_pred HHhcCCCce-EecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHH
Q 018243 273 GLNQLKGLR-VDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 273 ~l~~~~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~ 342 (359)
.|+++.... +..-...+.++.+.+..+. ......+.+.+.++|+.+.+.+...+|+.++..+++++++++
T Consensus 358 ~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~ 437 (459)
T PRK05965 358 GLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLI 437 (459)
T ss_pred HHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHH
Confidence 887752111 1111345666566553210 012457888889999999877777899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018243 343 LSCFQKIYAGVC 354 (359)
Q Consensus 343 ~~~l~~~~~~~~ 354 (359)
+++|.++++++.
T Consensus 438 ~~~l~~~l~~~~ 449 (459)
T PRK05965 438 FERTRKTLDDVL 449 (459)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=176.89 Aligned_cols=342 Identities=17% Similarity=0.200 Sum_probs=209.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +...-+|.+.+++.+....... ...++...++.+.++++++. +...+++||++|+..+++
T Consensus 54 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~Alk 133 (451)
T PRK06918 54 NQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVK 133 (451)
T ss_pred CEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHH
Confidence 357899887 3344558999888875543221 12356778888899998863 356899999999999999
Q ss_pred HhhhhcCC-eEEecC-CCcceeeccccccccCCc-------------cceeeecCCCC----CCC--------HHHHHHH
Q 018243 72 VHCETRGS-EVILGD-NSHIHIYENGGISTIGGV-------------HPRTVKNNQDG----TMD--------IDLIEAA 124 (359)
Q Consensus 72 ~~~~~~g~-~vl~~~-~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~----~~~--------~~~l~~~ 124 (359)
.+..-.|. +|+.-. .+|+.+.. + ....+. .+..++.+... .+. .+.+++.
T Consensus 134 lAr~~tgr~~ii~~~~~yHG~t~~--~-ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK06918 134 IARKYTKRQGIISFSRGFHGRTLM--T-MTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNF 210 (451)
T ss_pred HHHHHhCCCcEEEECCCcCccchh--h-hhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHH
Confidence 88753433 455444 44444332 1 111110 11222221100 010 1234433
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV 203 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~ 203 (359)
+.+. ....++.+|++++...+ +|. ..+.+++++|+++|++||+++|+||++..............+...+|+ .
T Consensus 211 ~~~~---~~~~~iAavi~EPi~g~-gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi--~ 284 (451)
T PRK06918 211 FISE---VAPETIAAVVMEPVQGE-GGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDL--I 284 (451)
T ss_pred HHhh---cCCCceEEEEECcccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCE--E
Confidence 3210 01157899999988774 466 455677999999999999999999997433222111122222223564 4
Q ss_pred eccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----
Q 018243 204 CLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---- 277 (359)
Q Consensus 204 s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---- 277 (359)
+++|.++.+.. |++++++++.+.+... ..+.++..+++.++++...++...+ ...++..++.+++.+.|+++
T Consensus 285 t~sK~l~~G~pig~v~~~~~i~~~~~~~--~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~ 362 (451)
T PRK06918 285 TVSKSLGAGVPISGVIGRKEIMDESAPG--ELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKY 362 (451)
T ss_pred eeehhhcCCCccEEEEEcHHHHhccCCC--CcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78899974333 7788888888776422 2345555667777777776654322 23344555556666666543
Q ss_pred CCceEecCCccceEEEEEec-c-----chHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEIT-E-----DSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+.+.-. .+ .+.++.+.+. + +.......+.+.+.++||.+.+++ ...+|++++..++++++++++++|.++
T Consensus 363 ~~~~~v-rg-~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~ 440 (451)
T PRK06918 363 NCIGDV-RG-LGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEES 440 (451)
T ss_pred CCceee-cc-ceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 222212 22 3444443332 1 122346778888899999998865 378999998779999999999999999
Q ss_pred HHHHHhhc
Q 018243 350 YAGVCEEN 357 (359)
Q Consensus 350 ~~~~~~~~ 357 (359)
++++.++.
T Consensus 441 l~~~~~~~ 448 (451)
T PRK06918 441 LQACYEKA 448 (451)
T ss_pred HHHHHHhh
Confidence 99876543
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=174.98 Aligned_cols=334 Identities=14% Similarity=0.145 Sum_probs=208.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+....... +...+...++.+.+++.++. +...+++||++|+..+++
T Consensus 33 ~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk 112 (420)
T TIGR00700 33 NRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVK 112 (420)
T ss_pred CEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHH
Confidence 357899887 3445568999888876543221 12345567788888888752 456899999999999999
Q ss_pred HhhhhcCC-eEE-ecCCCcceeeccccccccCC--------c-----cceeeecCCCCC-------C----CHHHHHHHh
Q 018243 72 VHCETRGS-EVI-LGDNSHIHIYENGGISTIGG--------V-----HPRTVKNNQDGT-------M----DIDLIEAAI 125 (359)
Q Consensus 72 ~~~~~~g~-~vl-~~~~~~~~~~~~~~~~~~~g--------~-----~~~~v~~~~~~~-------~----~~~~l~~~l 125 (359)
.+....|. +|+ +....|+.+.. ++ ...+ . .+..++.+.... . +++.+++.+
T Consensus 113 lAr~~tgr~~ii~~~~~yHG~t~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (420)
T TIGR00700 113 IARSYTGRPGVVAFDHGFHGRTNM--TM-ALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIF 189 (420)
T ss_pred HHHHhcCCCcEEEECCCcCCCcHH--HH-HhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHH
Confidence 88754443 455 44445544332 11 1111 0 112222211100 0 144566655
Q ss_pred cCCCCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEE
Q 018243 126 RDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSAS 202 (359)
Q Consensus 126 ~~~~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~ 202 (359)
... ...+++.+|++++... .+|..+ +.+++++|+++|++||+++|+||++..... .+. ........+|++
T Consensus 190 ~~~---~~~~~iAavi~Epi~g-~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr--~g~~~a~~~~~~~pDi~- 262 (420)
T TIGR00700 190 VID---VGANNVAALVIEPVQG-EGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR--TGAMFACEHEGPEPDLI- 262 (420)
T ss_pred Hhh---cCCCcEEEEEECCccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc--cchhHHHhhcCCCCCEE-
Confidence 310 0115799999999887 467754 557799999999999999999999753222 232 112222245654
Q ss_pred EeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----
Q 018243 203 VCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ---- 276 (359)
Q Consensus 203 ~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~---- 276 (359)
+++|.++.+.. |++++++++++.+... ..+.++..+++.++++..+++...+ ...++..+..+++++.|++
T Consensus 263 -~lsK~l~~G~pig~v~~~~~i~~~~~~~--~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~ 339 (420)
T TIGR00700 263 -TTAKSLADGLPLSGVTGRAEIMDAPAPG--GLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAV 339 (420)
T ss_pred -EeeccccCCcceEEEEecHHHHhhcCCC--CcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899974322 7788898988776432 2445555667777777777654322 2344455555555555554
Q ss_pred CCCceEecCCccceEEEEEeccc-----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVDAVETNIVYFEITED-----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 277 ~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.|.+... ...+.++++.+..+ .......+.+.+.++||.+.|++ ...+|++++..++++++++++++|.++
T Consensus 340 ~~~~~~v--rg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~ 417 (420)
T TIGR00700 340 DPRIGDV--RGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAI 417 (420)
T ss_pred CCCEEEe--eccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 3333322 23577778776321 12245677788889999998865 468999998778999999999999988
Q ss_pred HH
Q 018243 350 YA 351 (359)
Q Consensus 350 ~~ 351 (359)
+.
T Consensus 418 l~ 419 (420)
T TIGR00700 418 LA 419 (420)
T ss_pred hh
Confidence 74
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=175.07 Aligned_cols=337 Identities=16% Similarity=0.135 Sum_probs=213.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.++++.+. +.+.+++||++|+..+++.+
T Consensus 53 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklA 132 (451)
T PRK06062 53 RRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMA 132 (451)
T ss_pred CEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHH
Confidence 367899886 3445558898888875543211 12356677888888888753 46789999999999999988
Q ss_pred hhhcC-CeEEecC-CCcceeeccccccccCCc-----------cceeeecCCCCC------CC-------HHHHHHHhcC
Q 018243 74 CETRG-SEVILGD-NSHIHIYENGGISTIGGV-----------HPRTVKNNQDGT------MD-------IDLIEAAIRD 127 (359)
Q Consensus 74 ~~~~g-~~vl~~~-~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~~------~~-------~~~l~~~l~~ 127 (359)
....| .+|+... .+|..+.. + ....+. .+..++.+.... -| ++.+++.++.
T Consensus 133 r~~tgr~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 209 (451)
T PRK06062 133 RLHTGRPKVLSAYRSYHGGTGS--A-INLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIEL 209 (451)
T ss_pred HHhhCCceEEEEeCCCCCCCHH--H-HhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHh
Confidence 75444 3465444 44444322 1 111110 111121111110 12 5677777753
Q ss_pred CCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEe
Q 018243 128 PKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVC 204 (359)
Q Consensus 128 ~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s 204 (359)
. ...++.+|++++...+ .|.. .|.+++++++++|++||+++|+||++... +..|.. ...+.-.+|++ +
T Consensus 210 ~----~~~~iAaviiEPv~g~-gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGf--GRtG~~~a~~~~gv~PDi~--t 280 (451)
T PRK06062 210 E----GPSTIAAILLESVPGT-AGILVPPPGYLAGVRELCDRHGIVLIADEVMAGF--GRTGKWFAIEHFGVVPDLI--T 280 (451)
T ss_pred c----CCCceEEEEEccccCC-CCcccCCHHHHHHHHHHHHHcCCEEEeeccccCC--CcCcHHHHHHhcCCCCCee--e
Confidence 1 1146899999999885 4554 67799999999999999999999998632 222322 11222356655 5
Q ss_pred ccccCCC---ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHH-HHHHHHHhcC--
Q 018243 205 LSKGLGA---PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKA-KLLAEGLNQL-- 277 (359)
Q Consensus 205 ~~K~~g~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~-~~l~~~l~~~-- 277 (359)
++|.+|+ |.|+ +++++++.+.+.......+.++..+++.++++..+++...+ +..++..++. ++|++.|+++
T Consensus 281 ~gK~lggG~~Piga-v~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~ 359 (451)
T PRK06062 281 FAKGVNSGYVPLGG-VAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAE 359 (451)
T ss_pred echhhhcCCcCcEE-EEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6798865 4556 55666888776432113455666778888888888876543 2444455554 4666666553
Q ss_pred --CCceEecCCccceEEEEEeccch-------H-----HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHH
Q 018243 278 --KGLRVDVDAVETNIVYFEITEDS-------K-----LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTL 343 (359)
Q Consensus 278 --~g~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~ 343 (359)
|.+.-. ...+.++.+.+..+. . .....+.+.|.++||.+.+. .+.+|++++..++++++++++
T Consensus 360 ~~~~v~~v--rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~~~ 436 (451)
T PRK06062 360 RHPSVGEV--RGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVREGL 436 (451)
T ss_pred cCCcEEeE--eccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHHHH
Confidence 222111 234555555553210 0 12457888899999998654 468999998899999999999
Q ss_pred HHHHHHHHHHHh
Q 018243 344 SCFQKIYAGVCE 355 (359)
Q Consensus 344 ~~l~~~~~~~~~ 355 (359)
++++++++++..
T Consensus 437 ~~l~~~l~~~~~ 448 (451)
T PRK06062 437 AILDAALAVADA 448 (451)
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-21 Score=173.51 Aligned_cols=339 Identities=14% Similarity=0.107 Sum_probs=217.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|++.+++.+...... .+..++...++.+.+++.++. +...+++||++|+..|++.
T Consensus 53 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~Alkl 132 (457)
T PRK05639 53 NVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKV 132 (457)
T ss_pred CEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHH
Confidence 367899886 344556999988887654321 233356777888999988764 4568999999999999999
Q ss_pred hhhhcCC-eEEec-CCCcceeeccccccccCC--------c-----cceeeecCCCCC--------CCH--------HHH
Q 018243 73 HCETRGS-EVILG-DNSHIHIYENGGISTIGG--------V-----HPRTVKNNQDGT--------MDI--------DLI 121 (359)
Q Consensus 73 ~~~~~g~-~vl~~-~~~~~~~~~~~~~~~~~g--------~-----~~~~v~~~~~~~--------~~~--------~~l 121 (359)
+....|. +|+.. ..+|..+.. + ....+ . .+..++.+.... -+. +.+
T Consensus 133 Ar~~tgr~~ii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (457)
T PRK05639 133 SKFSTRRPWILAFIGAYHGQTLG--A-TSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYL 209 (457)
T ss_pred HHHhcCCCeEEEECCCcCCccHH--H-HHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHH
Confidence 8754443 45544 445554432 1 11111 0 122333321110 022 234
Q ss_pred HHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCc
Q 018243 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAA 198 (359)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~ 198 (359)
++.+... ..+..++.+|++++...+ +|. ..|.++++++.++|++||+++|+||++. | ++..|.. ...+.-.+
T Consensus 210 e~~l~~~--~~~~~~iAAvI~EPiqg~-gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv~P 284 (457)
T PRK05639 210 ENYVFSH--VVPPDEVAALFAEPIQGD-AGIVVPPENFFKELKKLLDEHGILLVMDEVQT-G-IGRTGKWFASEWFEVKP 284 (457)
T ss_pred HHHHHHh--hcCCCceEEEEECCccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcCchHHHHHhcCCCC
Confidence 4443210 001157999999998884 566 5667999999999999999999999985 2 3333432 12222356
Q ss_pred cEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc
Q 018243 199 DSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 199 d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~ 276 (359)
|+++ ++|.+++..+ |.+++++++.+.. ......++..++..++++...++...+ +..++..++.++|++.|++
T Consensus 285 Div~--~gK~l~gG~pi~av~~~~~i~~~~---~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~ 359 (457)
T PRK05639 285 DLII--FGKGVASGMGLSGVIGRKELMDLT---SGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLE 359 (457)
T ss_pred CEEE--echhhcCCCcceeEEehHHHHhhc---CCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 7666 6798864444 6677888887732 122345556677778888888866543 3456666777888888776
Q ss_pred C-CCceEe-cCCccceEEEEEeccc----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 277 L-KGLRVD-VDAVETNIVYFEITED----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 277 ~-~g~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+ .+..+. .-...+.++.+.+..+ .......+.+.+.++|+.+.+.+ ...+|+.++..++++++++++++|++
T Consensus 360 l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~ 439 (457)
T PRK05639 360 MKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMER 439 (457)
T ss_pred HHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence 3 112211 1134556666655321 11235678888899999996654 57899999999999999999999999
Q ss_pred HHHHHH
Q 018243 349 IYAGVC 354 (359)
Q Consensus 349 ~~~~~~ 354 (359)
+++++.
T Consensus 440 ~l~~~~ 445 (457)
T PRK05639 440 AIKDAL 445 (457)
T ss_pred HHHHHH
Confidence 998764
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=177.49 Aligned_cols=331 Identities=17% Similarity=0.147 Sum_probs=213.5
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.+++||.++. ....+|.+.+++.+.... ...+...+...++.+.+++.+ +.+..++++||++|+..+++.++..
T Consensus 50 ~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~ 129 (426)
T PRK00062 50 NEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGY 129 (426)
T ss_pred CEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 3678998863 335568888888775543 222345677788999999876 4556788999999999999987742
Q ss_pred -cCCeEEecCCCcceeecccccccc------------CCcc-------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 77 -RGSEVILGDNSHIHIYENGGISTI------------GGVH-------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 77 -~g~~vl~~~~~~~~~~~~~~~~~~------------~g~~-------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
.+++|+..+++|..... + .... .+.. ...++. .|++.+++.+++.. .+
T Consensus 130 ~g~~~ii~~~~~yHG~t~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~-----~~ 197 (426)
T PRK00062 130 TGRDKIIKFEGCYHGHAD-S-LLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY-----NDLEAVEELFEEYG-----DE 197 (426)
T ss_pred hCCCeEEEEcCccCCchh-h-hhhccCccccccCCCCCCCCCcccccceEEcCC-----CCHHHHHHHHHhCC-----Cc
Confidence 24567777776555331 0 0110 0101 111121 27889998886421 47
Q ss_pred eeEEEEeccccCCCceecC-hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e
Q 018243 137 TRLICLENTHANCGGRCLS-VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g 214 (359)
+++|++++.+++ +|...+ .+++++|.++|++||+++|+||+|.. ...........+...+|+ .+++|.++.+. .
T Consensus 198 ~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G-~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~p~ 273 (426)
T PRK00062 198 IAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTG-FRVALGGAQGYYGVTPDL--TTLGKIIGGGLPV 273 (426)
T ss_pred EEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhc-cccCCccHHHHhCCCcch--HhhhhHhhCCCcc
Confidence 889999988885 677765 78999999999999999999999853 222111111112223554 47789996432 2
Q ss_pred eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceEecCCcc
Q 018243 215 SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRVDVDAVE 288 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~ 288 (359)
|++++++++.+.++.... ..+.++..++..++++..+++...+ +..++..++.+++++.|++ . ++.... +..
T Consensus 274 ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v-rg~ 351 (426)
T PRK00062 274 GAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKA-GIPLTV-NRV 351 (426)
T ss_pred eeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-CCceEE-EEe
Confidence 557788888887742221 2333445567777777777754332 2455556666666666653 4 443322 235
Q ss_pred ceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 289 ~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++.+.+..+ +......+.+.|.++||.+.+.+...+++++ .++++++++++++|+++++++
T Consensus 352 G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~~~~~--~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 352 GSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSA--AHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred cceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCceeeec--cCCHHHHHHHHHHHHHHHHhh
Confidence 66655555321 0113467889999999999876656677764 799999999999999998764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=174.26 Aligned_cols=337 Identities=16% Similarity=0.165 Sum_probs=212.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCcc----CCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDVL----MHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+.......+ ..++...++.+.|++.++ .+...+++||++|+..+++
T Consensus 54 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~Alk 133 (441)
T PRK05769 54 NVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIK 133 (441)
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHH
Confidence 357899887 34455588888888755432211 125667788888888875 3456889999999999999
Q ss_pred HhhhhcC-CeEEecC-CCcceeeccccccccCCc-------------cceeeecCCCCC-----CC--------HHHHHH
Q 018243 72 VHCETRG-SEVILGD-NSHIHIYENGGISTIGGV-------------HPRTVKNNQDGT-----MD--------IDLIEA 123 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~-~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~-----~~--------~~~l~~ 123 (359)
.+....| .+|+.-+ .+|+.+.. + ....+. .+..++.+.... -+ .+.+++
T Consensus 134 lAr~~tgr~~Ii~~~~~yHG~t~~--~-ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 210 (441)
T PRK05769 134 IARYHTGRKYIIAFLGAFHGRTYG--S-LSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIED 210 (441)
T ss_pred HHHHHhCCCeEEEECCCcCCccHH--H-HHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHH
Confidence 8875444 3455444 44544432 1 111110 112222211100 01 233454
Q ss_pred -HhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCcc
Q 018243 124 -AIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAAD 199 (359)
Q Consensus 124 -~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d 199 (359)
.+++. .+..++.+|++++..++ .|. ..+.++++++.++|++||+++|+||++.. ++..+.. ...+...+|
T Consensus 211 ~~~~~~---~~~~~iaavi~Epv~g~-~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG--~gr~G~~~a~~~~gv~pD 284 (441)
T PRK05769 211 YLFKKL---VPPEEVAAIIVEPIQGE-GGYVVPPKNFFKELRKLADKYGILLIDDEVQTG--MGRTGKMFAIEHFGVEPD 284 (441)
T ss_pred HHHhhc---cCCCceEEEEECcccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcccceehhhccCCCCC
Confidence 22210 01157899999998884 455 45679999999999999999999999862 2222321 122222467
Q ss_pred EEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCC
Q 018243 200 SASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLK 278 (359)
Q Consensus 200 ~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 278 (359)
+++ ++|.++.+.. |++++++++.+.. ....+.++..++..++++..+++...++..++..++.++|++.|+++.
T Consensus 285 ivt--~~K~l~~G~p~gav~~~~~i~~~~---~~~~~~T~~g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~ 359 (441)
T PRK05769 285 IIT--LAKAIAGGLPLGAVIGRAELMFLP---PGSHANTFGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELK 359 (441)
T ss_pred EEE--EcccccCCcccEEEEEehhhhhcC---CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 5688864322 5677787776432 223455555667777777877765433466777788888888887641
Q ss_pred -CceEe-cCCccceEEEEEeccc----hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 279 -GLRVD-VDAVETNIVYFEITED----SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 279 -g~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
...+. .....+.++.+.+..+ .......+.+.+.++||.+.+.+...+|++++..++++|++++++++++++++
T Consensus 360 ~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 360 EKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111 1123556666666331 11235678888889999998877789999999899999999999999999876
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 440 ~ 440 (441)
T PRK05769 440 L 440 (441)
T ss_pred h
Confidence 4
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-22 Score=163.75 Aligned_cols=308 Identities=13% Similarity=0.116 Sum_probs=181.9
Q ss_pred cc-CCChHHHHHHHHHHHHhCCCCe-EEcCC-chHHHHH-HHHHh-hh-----------hcCCeEEecCCCcceeecccc
Q 018243 33 VL-MHDPTAFRLETEMAKVMGKEAG-LFVPS-GTMGNLI-SVLVH-CE-----------TRGSEVILGDNSHIHIYENGG 96 (359)
Q Consensus 33 ~~-~~~~~~~~l~~~la~~~~~~~~-~~~~~-gt~a~~~-~l~~~-~~-----------~~g~~vl~~~~~~~~~~~~~~ 96 (359)
-| |.-.+..++|+.+++++|.+.. ++..+ .+-.++. ++..+ +. .+.-++++|.|.|--.+ +
T Consensus 63 NY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF---a 139 (425)
T PF12897_consen 63 NYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF---A 139 (425)
T ss_dssp SS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH---H
T ss_pred CCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH---H
Confidence 47 7788999999999999999875 33333 2222221 22211 11 12336899999965544 6
Q ss_pred ccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH-HHHcCcEEEE
Q 018243 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI-AKKHGLKLHI 175 (359)
Q Consensus 97 ~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~-~~~~~~~li~ 175 (359)
+++..|++.+.|+..++| +|++.+++.+.+. +.+|.+|+.+.++||||.+|+.|-+++++.+ +...+..|+.
T Consensus 140 i~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D------~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~W 212 (425)
T PF12897_consen 140 ITEHFGIEMIPVPMTEDG-PDMDMVEELVAED------PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFW 212 (425)
T ss_dssp HHHHCT-EEEEEEEETTE-E-HHHHHHHTHTS------TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEE
T ss_pred HHHhhCcEEEecCCCCCC-CCHHHHHHHHhcC------CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEe
Confidence 799999999999998887 5999999998532 7899999999999999999999989998888 4467999999
Q ss_pred ecccccchhhhcC-c----hhHhh---hcCcc-EEEE-eccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHH
Q 018243 176 DGARIFNAAVALG-V----PVRRL---VQAAD-SASV-CLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 176 D~a~~~~~~~~~~-~----~~~~~---~~~~d-~~~~-s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (359)
|+||.+..+.... . ..... ....| ++.+ |+||.-..+.| +++.++++.++.++......+.+..-..++
T Consensus 213 DNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQL 292 (425)
T PF12897_consen 213 DNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQL 292 (425)
T ss_dssp E-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHH
T ss_pred ecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHH
Confidence 9998776663221 1 11111 12344 5555 99998765566 888899988888776555444444333333
Q ss_pred HHHHH----H-HHHHhHHHHh----hhHHHHHHHHHHHHh-cCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 245 CAAAL----V-ALQENVLVML----DGDHKKAKLLAEGLN-QLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 245 ~~~~~----~-~l~~~~~~~~----~~~~~~~~~l~~~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
..+.. . +++.+.+... -+...-.+.|.+.|. .. ++.-+..|.+++|+++.+... .+..+++.+.+.
T Consensus 293 RHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GGYFIsld~~~G---~AkrvV~lakeA 368 (425)
T PF12897_consen 293 RHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGGYFISLDVLDG---TAKRVVELAKEA 368 (425)
T ss_dssp HHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBSS-EEEEESTT----HHHHHHHHHHT
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCceEEEEecCCC---hHHHHHHHHHHh
Confidence 33321 1 2222222111 122233455566666 44 554456678999999999874 788999999999
Q ss_pred CceeccCC----------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 315 GVLVMPES----------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 315 gi~~~~~~----------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
||.+.+.| ...|||+++ .-+.+|++.+.+.+.-+++-...
T Consensus 369 GV~LT~AGAtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~cv~la~~ 418 (425)
T PF12897_consen 369 GVALTPAGATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFATCVKLAAV 418 (425)
T ss_dssp TEE---TTTTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CceeCCCCCCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99996643 346999998 68899999999999988775543
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=191.11 Aligned_cols=340 Identities=13% Similarity=0.098 Sum_probs=210.6
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC----CCC-ccC----CChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV----DDD-VLM----HDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~----~~~-~~~----~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~ 69 (359)
.+++|.+...+.+. ..+.+++.+... +.. .+. ......+.|+.+++++|++. .++++|+|+|+..+
T Consensus 34 ~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlv 113 (805)
T PLN02724 34 GVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLV 113 (805)
T ss_pred CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHH
Confidence 35777777665543 455555433211 111 111 13356889999999999842 26777788888888
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--------CCCCCCH--HHHHHHhcCC--CCCccCCce
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--------QDGTMDI--DLIEAAIRDP--KGEIVYPTT 137 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------~~~~~~~--~~l~~~l~~~--~~~~~~~~~ 137 (359)
+..+..++|++|+++...|.+.......++..|+++..++.+ ..+.++. ++|++.++.. ......+++
T Consensus 114 a~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t 193 (805)
T PLN02724 114 GETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAY 193 (805)
T ss_pred HHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCc
Confidence 777644689999998888877653111234468888887654 3343443 5566653200 000011456
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHc-----CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKH-----GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~-----~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~ 212 (359)
++|.+.+..| -||...|.+.+..+.+.++++ ++++++|.+|+.+.. ...+..+ ++|++++|+||++|+|
T Consensus 194 ~LVa~~~vsN-~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~---piDv~~~--~~Dfl~~S~HK~~GgP 267 (805)
T PLN02724 194 NLFAFPSECN-FSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS---PPDLSRY--PADFVVVSFYKIFGYP 267 (805)
T ss_pred ceEEEEcccc-CCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC---CCChhhc--CCCEEEEecceeccCC
Confidence 8888866554 899999965443333333222 368999999866544 3334444 7999999999999989
Q ss_pred ee-eEEecCHHHHHHHHHHHHh------------------------hCCCcchhHHHHHHHHHHH---HH-hHHHHhhhH
Q 018243 213 VG-SVIVGSKEFIKKARRLRKT------------------------LGGGMRQVGVLCAAALVAL---QE-NVLVMLDGD 263 (359)
Q Consensus 213 ~g-g~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~ 263 (359)
.| |+++.++++.+.+...... -.++....++ ++...++ .. ..+.+.++.
T Consensus 268 ~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i--~~l~aal~~l~~ig~~~I~~~~ 345 (805)
T PLN02724 268 TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSI--AALRHGFKLLNRLTISAIAMHT 345 (805)
T ss_pred CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHH--HHHHHHHHHHHHhChHHHHHHH
Confidence 88 9999888877654321110 0111111111 1112233 22 334455667
Q ss_pred HHHHHHHHHHHhcCC------CceEecCC-------ccceEEEEEeccchH--HHHHHHHHHHHhcCceeccC-------
Q 018243 264 HKKAKLLAEGLNQLK------GLRVDVDA-------VETNIVYFEITEDSK--LYAACLLKKLEEHGVLVMPE------- 321 (359)
Q Consensus 264 ~~~~~~l~~~l~~~~------g~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~~~~~------- 321 (359)
.++.+++.+.|++++ ++.+..+. ..++++.|++....+ +...++...+..+||.+..|
T Consensus 346 ~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~ 425 (805)
T PLN02724 346 WALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGA 425 (805)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchH
Confidence 788899999999885 46664322 246788888765211 22344544457789988322
Q ss_pred --------------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 --------------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 --------------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+.+|+|+++++|.+|++++++.|++.+.
T Consensus 426 ~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 426 CAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 126799999999999999999999999764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-21 Score=172.27 Aligned_cols=343 Identities=18% Similarity=0.164 Sum_probs=217.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC-cc---CCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD-VL---MHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+...... .+ ..++...++.+.+++.+.. +...+++||++|+..+++.
T Consensus 31 ~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~Alkl 110 (447)
T PRK06917 31 NKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKI 110 (447)
T ss_pred CEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHH
Confidence 367898876 344556999988887654321 11 2356667888889888754 3458889999999999998
Q ss_pred hhhh------cC-CeEEecCC-CcceeeccccccccCCc------------cceeeecCC--CCC----------CCHHH
Q 018243 73 HCET------RG-SEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQ--DGT----------MDIDL 120 (359)
Q Consensus 73 ~~~~------~g-~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~--~~~----------~~~~~ 120 (359)
+... ++ .+|+.-.. +|..+.. + ....+. .+..++.+. ... -+++.
T Consensus 111 Ar~~~~~rg~t~r~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 187 (447)
T PRK06917 111 AIQHFQERGIQGKHKILSRWMSYHGITMG--A-LSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATE 187 (447)
T ss_pred HHHHHHhcCCCCCCEEEEECCCcCCccHH--H-HHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHH
Confidence 8531 22 45665554 4443322 1 111111 011111111 000 02356
Q ss_pred HHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcC
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQA 197 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~ 197 (359)
+++.+++.. ..++.+|++++...+.+|+ ..|.++++++.++|++||+++|+||++.. ++..+... ..+.-.
T Consensus 188 le~~i~~~~----~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tG--fGRtG~~~a~~~~gv~ 261 (447)
T PRK06917 188 LETAIERIG----AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTG--LGRTGAMFAMEHWGVE 261 (447)
T ss_pred HHHHHHhcC----CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhC--cCcccchhhHHhcCCC
Confidence 677776321 1368999999988755565 45679999999999999999999999752 22233322 222235
Q ss_pred ccEEEEeccccCCCce--eeEEecCHHHHHHHHHHH--HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHH
Q 018243 198 ADSASVCLSKGLGAPV--GSVIVGSKEFIKKARRLR--KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAE 272 (359)
Q Consensus 198 ~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~ 272 (359)
+|++ +++|.++++. .+.+++++++.+.+.... ...++++..+++.++++...++...+ +..++..++.++|++
T Consensus 262 PDi~--~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 339 (447)
T PRK06917 262 PDIM--TLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIK 339 (447)
T ss_pred CCEE--EeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 6765 5568886432 255667888887764221 12345666678888888888865533 355667777778877
Q ss_pred HHhcCC---CceEecCCccceEEEEEeccc---------hHHHHHHHHHHHHhcCceeccCC-------CcEEEEEeCCC
Q 018243 273 GLNQLK---GLRVDVDAVETNIVYFEITED---------SKLYAACLLKKLEEHGVLVMPES-------STRVRIVVHHQ 333 (359)
Q Consensus 273 ~l~~~~---g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~~~~~~-------~~~lRi~~~~~ 333 (359)
.|+++. ++.... ...+.++.+.+..+ .......+.+.+.++||.+.+.+ .+.+|++++..
T Consensus 340 ~L~~l~~~~~~i~~v-rG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~ 418 (447)
T PRK06917 340 GLQKVQQQSTIIGDV-RGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMT 418 (447)
T ss_pred HHHHHHhcCCCEEEE-eecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCc
Confidence 777641 221111 33556665655321 01235678888899999997642 46899999889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 334 ISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 334 ~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
++++|++++++++.++++++.++.
T Consensus 419 it~~eid~~~~~l~~~l~~~~~~~ 442 (447)
T PRK06917 419 ITYSELDELLSIFAKSVEEMMQKG 442 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=173.53 Aligned_cols=329 Identities=19% Similarity=0.188 Sum_probs=213.6
Q ss_pred ccccccCCC----CCChHHHHHHHHHcCCCCCCc-cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcC
Q 018243 4 RTVDLRSDT----VTKPTEAMRAAMASAEVDDDV-LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRG 78 (359)
Q Consensus 4 ~~id~~~~~----~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g 78 (359)
++|||.++. ....+|.+.+++.+....... ...++...++.+.+++.++.+...+++|||+|+..+++.++.-.|
T Consensus 76 ~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TG 155 (453)
T PRK07046 76 RYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTG 155 (453)
T ss_pred EEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhC
Confidence 578987663 334458888888876543222 234677788889999988877789999999999999999876444
Q ss_pred C-eEEecCC-Ccceeeccccccc-----------cCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 79 S-EVILGDN-SHIHIYENGGIST-----------IGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 79 ~-~vl~~~~-~~~~~~~~~~~~~-----------~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
. +|+..+. +|+.... .... ..|. .+..++.+ |++.+++.+.. .++.+
T Consensus 156 r~~ii~~~g~YHG~~d~--~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~-------~~vAa 221 (453)
T PRK07046 156 RPKILVFNGCYHGTVDD--VFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFN-----DLAALEAALAD-------GDVAA 221 (453)
T ss_pred CCEEEEECCCCCCCcHH--hHhhccCCCCCCCCCCCCCCccccCceEeeCCC-----CHHHHHHHhCC-------CCeEE
Confidence 4 4664444 4443211 0011 0010 11112222 88999998863 57999
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEe
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIV 218 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~ 218 (359)
|++++...+.+-...+.+++++++++|++||+++|+||++.++ .. .+.....+.-.+|+++ +.|.+|++.. |.++
T Consensus 222 vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr-~g-~Gg~~~~~gv~PDi~t--~gK~lggG~Pi~av~ 297 (453)
T PRK07046 222 VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTIS-SG-PGGYTRAHGLEPDFLV--VGKPIAGGVPCAVYG 297 (453)
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCc-cC-CcchhHHhCCCcccee--ehhhhcCCCcceeee
Confidence 9999998865434556699999999999999999999998632 11 1222222333567664 5788864332 5677
Q ss_pred cCHHHHHHHHHHH-------HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCc
Q 018243 219 GSKEFIKKARRLR-------KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAV 287 (359)
Q Consensus 219 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~ 287 (359)
+++++.+.+.... ...++++..+++.++++...++...+ +..++..++.++|++.|+++ -++......
T Consensus 298 g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g- 376 (453)
T PRK07046 298 FSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTR- 376 (453)
T ss_pred ehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-
Confidence 8889888765321 12455667788888888888865433 35566666777777777642 133322112
Q ss_pred cceEEEEEeccc------------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITED------------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 288 ~~~~~~~~~~~~------------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+..+.+.+..+ +......+...|.++||.+.+.+ ..+++++ .++++|+++++++++++++++.
T Consensus 377 ~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-~~~~~~p--~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 377 VGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPFH-NMMLVCP--ATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred eCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEeccc-CcEEEeC--CCCHHHHHHHHHHHHHHHHHHh
Confidence 233344443210 01123467777888999997743 4677776 5999999999999999998763
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=173.41 Aligned_cols=329 Identities=17% Similarity=0.188 Sum_probs=210.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++ +....+|.+.+++.+...... ....++...++.+.+++.++ .+.+.+++||++|+..+++.+...
T Consensus 53 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~ 132 (428)
T PRK12389 53 NKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAY 132 (428)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 357898776 334555999988887654322 22345667788888888774 455689999999999999988754
Q ss_pred cCC-eEEecC-CCcceeeccccccccCCc-------------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 77 RGS-EVILGD-NSHIHIYENGGISTIGGV-------------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 77 ~g~-~vl~~~-~~~~~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
.|. +|+.-. .+|..+.. . ....+. .+..++.+ |++.+++.+++.. .
T Consensus 133 tgr~~ii~~~~~yHG~t~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~-----~ 199 (428)
T PRK12389 133 TGRTKIIKFAGCYHGHSDL--V-LVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKEALDKWG-----D 199 (428)
T ss_pred hCCCEEEEECCCcCCChHH--H-HHhcCCcccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHHHHHhcC-----C
Confidence 443 455444 44443321 1 111110 11112222 7889988887422 4
Q ss_pred ceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC--c
Q 018243 136 TTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA--P 212 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~--~ 212 (359)
++.+|++++..++ .|.. .+.+++++|+++|++||+++|+||++..+ ....+.....+...+|++ +++|.+++ |
T Consensus 200 ~vaavi~EPv~g~-~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDiv--t~gK~lggG~P 275 (428)
T PRK12389 200 EVAAVLVEPIVGN-FGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLT--ALGKIIGGGLP 275 (428)
T ss_pred cEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCee--eechhhcCCCc
Confidence 6889999998874 5654 56799999999999999999999998643 221111111222356765 56788854 4
Q ss_pred eeeEEecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCc
Q 018243 213 VGSVIVGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAV 287 (359)
Q Consensus 213 ~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~ 287 (359)
.|+ +++++++.+.+.... ...++++..+++.++++...++...+ +..++..++.++|++.|+++ -++.......
T Consensus 276 i~a-v~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~ 354 (428)
T PRK12389 276 IGA-YGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRL 354 (428)
T ss_pred eeE-EeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 555 577888888764211 23455666778888888888875543 35667777888888887763 1322211122
Q ss_pred cceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 288 ~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+ ++.+.+..+ +......+.+.|.++||.+.+.+...+. ++..++++|++++++++++++++
T Consensus 355 ~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~--~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 355 KG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWF--LTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred Cc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCCee--ecCCCCHHHHHHHHHHHHHHHHh
Confidence 33 333433211 0113567888889999999775444444 44589999999999999998865
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-21 Score=172.65 Aligned_cols=338 Identities=14% Similarity=0.112 Sum_probs=211.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC-C--c-cCCChHHHHHHHHHHHHhCC-------CCeEEcCCchHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD-D--V-LMHDPTAFRLETEMAKVMGK-------EAGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~-~--~-~~~~~~~~~l~~~la~~~~~-------~~~~~~~~gt~a~~ 67 (359)
.++|||.++ +....+|++.+++.+..... . . ...++...++.+.+++.+.. +...+++||++|+.
T Consensus 64 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE 143 (472)
T PRK08742 64 RRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVE 143 (472)
T ss_pred CEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHH
Confidence 357899887 44566699998887754321 1 1 12356677888888887753 35688999999999
Q ss_pred HHHHHhhhh------c-CCeEEecCC-CcceeeccccccccCCc------------cceeeecCCCC----CC-------
Q 018243 68 ISVLVHCET------R-GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDG----TM------- 116 (359)
Q Consensus 68 ~~l~~~~~~------~-g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~----~~------- 116 (359)
.|++.+... + ..+|+.... +|..+.. + ....+. .+..++.+... ..
T Consensus 144 ~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~g--a-ls~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (472)
T PRK08742 144 VALKMAFHYFHNRGEHRRTRFIALENGYHGETIG--A-LAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220 (472)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchh--h-hhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHH
Confidence 999998642 2 245665554 4444322 1 111111 11222222111 11
Q ss_pred -CHHHHHHHhcCCCCCccCCceeEEEEec-cccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh
Q 018243 117 -DIDLIEAAIRDPKGEIVYPTTRLICLEN-THANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 117 -~~~~l~~~l~~~~~~~~~~~~~~v~i~~-~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
+++.+++.+++.. .++.+|++++ ..+ .+|+ ..|.+++++++++|++||+++|+||++..............
T Consensus 221 ~~~~~l~~~~~~~~-----~~iAAvI~EPviqg-~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~ 294 (472)
T PRK08742 221 QAADALQALFEQSP-----GEICALILEPRLQC-AGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQ 294 (472)
T ss_pred HHHHHHHHHHHhCC-----CceEEEEEcccccc-CCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHh
Confidence 2456666665311 5799999998 455 3465 56779999999999999999999999753322211111112
Q ss_pred hhcCccEEEEeccccCCCce--eeEEecCHHHHHHHHHH----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHH
Q 018243 194 LVQAADSASVCLSKGLGAPV--GSVIVGSKEFIKKARRL----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKK 266 (359)
Q Consensus 194 ~~~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 266 (359)
+.-.+|++++ +|.++++. -+.+++++++.+.+... ....+.++..+++.++++...++...+ +..++..++
T Consensus 295 ~gv~PDiv~~--gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~ 372 (472)
T PRK08742 295 AGVMPDLLCL--SKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPT 372 (472)
T ss_pred cCCCCCEEEE--cccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 2235676655 58885432 24466788887765321 112455666678888888888876544 234555555
Q ss_pred HHHHHHHHhc---CCCceEecCCccceEEEEEeccch--------H-HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCC
Q 018243 267 AKLLAEGLNQ---LKGLRVDVDAVETNIVYFEITEDS--------K-LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQI 334 (359)
Q Consensus 267 ~~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~ 334 (359)
.++|.+.++. .|.+.-. ...+.++.+.+..+. . .-...+.+.+.++||.+.+.+ +.+|+.++..+
T Consensus 373 g~~l~~~~~~~~~~~~i~dv--RG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~~~PpL~i 449 (472)
T PRK08742 373 AARMTQLAAQIGEHPHVADV--RQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLG-DVLYWMPPYCV 449 (472)
T ss_pred HHHHHHHHHHHhcCCCeeeE--eccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCCCC
Confidence 5666555444 3322211 345666666663210 0 113567788889999997765 68999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 018243 335 SANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~~~~ 354 (359)
+++++++++++|+++++++.
T Consensus 450 t~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 450 DEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998753
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=172.46 Aligned_cols=333 Identities=15% Similarity=0.177 Sum_probs=210.2
Q ss_pred cccccccCC----CCCChHHHHHH--HHHcCCCCC------CccCCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRA--AMASAEVDD------DVLMHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~--a~~~~~~~~------~~~~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~ 67 (359)
.++|||.++ +....+|++.+ ++.+..... ......+...++.+.+++..+ .+...+++||++|++
T Consensus 45 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve 124 (443)
T PRK08297 45 RRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVE 124 (443)
T ss_pred CEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHH
Confidence 357899876 44455688888 777654221 111234566777778887762 345689999999999
Q ss_pred HHHHHhhhh-------c------CCeEEecCC-CcceeeccccccccCCccc-----------eeeecCC-C----C-C-
Q 018243 68 ISVLVHCET-------R------GSEVILGDN-SHIHIYENGGISTIGGVHP-----------RTVKNNQ-D----G-T- 115 (359)
Q Consensus 68 ~~l~~~~~~-------~------g~~vl~~~~-~~~~~~~~~~~~~~~g~~~-----------~~v~~~~-~----~-~- 115 (359)
.+++.+... + ..+|+.-.. +|+.+.. + ....+... ..++.+. . . .
T Consensus 125 ~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 125 NALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGY--T-LSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchh--h-hhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 999988521 1 245765554 4444332 1 21111100 0010000 0 0 0
Q ss_pred --C------CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc
Q 018243 116 --M------DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL 187 (359)
Q Consensus 116 --~------~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 187 (359)
. +++++++.+.++. .++.+|++++...+.+-...|.+++++++++|++||+++|+||++... +..
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~-----~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGf--GRt 274 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHP-----HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGV--GLT 274 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCC-----CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcc--Ccc
Confidence 0 2345566665321 579999999998865334577799999999999999999999997432 222
Q ss_pred Cchh--HhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH-H--HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhh
Q 018243 188 GVPV--RRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR-L--RKTLGGGMRQVGVLCAAALVALQENVL-VMLD 261 (359)
Q Consensus 188 ~~~~--~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 261 (359)
|... ..+.-.+|+++ ++|.+ |.+|++.++ ++.+.... + ....+.++..+++.++++...++...+ ...+
T Consensus 275 G~~~a~~~~gv~PDiv~--~gK~l--~~~a~l~~~-~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~ 349 (443)
T PRK08297 275 GTAWAYQQLGVRPDIVA--FGKKT--QVCGIMAGR-RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVE 349 (443)
T ss_pred chHHHHHhcCCCCCEEE--ecccc--cccceecch-HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHH
Confidence 3221 12223577775 56876 456666554 33222111 1 112455666677778888888765433 3556
Q ss_pred hHHHHHHHHHHHHhcC----CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHH
Q 018243 262 GDHKKAKLLAEGLNQL----KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 262 ~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~ 337 (359)
+..++.+++++.|+++ |.+.... ...+.++.+.+... .....+.+.|.++||.+.+.+...+|+.++..++++
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~v-rg~G~~~~i~~~~~--~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~ 426 (443)
T PRK08297 350 NAARQGEYLLARLEELAAEFPAVVSNV-RGRGLMCAFDLPTT--ADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTE 426 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcceee-eccceEEEEEecCH--HHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHH
Confidence 6777777777777653 3232111 23577777887652 246688899999999998877788999998899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018243 338 DVHYTLSCFQKIYAGV 353 (359)
Q Consensus 338 ~i~~~~~~l~~~~~~~ 353 (359)
++++++++|+++++++
T Consensus 427 eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 427 EIDAAIDALRRALPEV 442 (443)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998765
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-21 Score=170.87 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=204.1
Q ss_pred hHHHHHHHHHcCCCCCC--ccC-----CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 16 PTEAMRAAMASAEVDDD--VLM-----HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~~--~~~-----~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
.++++.+++.+...+.. .|. .++....+++.+++++|.+.+++++||+.|+..++.+ + .+|++|++++..|
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l-~~GdeVIvs~~e~ 175 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-L-AAGKEVIVSRGEL 175 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-h-CCCCEEEEcchhh
Confidence 34777777766433221 111 1345679999999999999999999999999888855 4 4899999998766
Q ss_pred ceee---ccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC--Cc--eecChhhHHH
Q 018243 89 IHIY---ENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC--GG--RCLSVEYTDS 161 (359)
Q Consensus 89 ~~~~---~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p--tG--~~~~~~~l~~ 161 (359)
+... ..-......|++++.++.. ...+++++++.++ ++|++|+++++.| | +| ...+ +++
T Consensus 176 ~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~--------~~TklV~~vh~sN-~~i~G~~~~~d---l~e 241 (464)
T PRK04311 176 VEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAIN--------ENTALLLKVHTSN-YRIEGFTKEVS---LAE 241 (464)
T ss_pred hhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcC--------ccCeEEEEEcCCC-ccccccCCcCC---HHH
Confidence 5321 1001245678888888643 2357899999998 7899999988766 5 34 3344 899
Q ss_pred HHHHHHHcCcEEEEecccccchhh--------hcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH--HH
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAV--------ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR--LR 231 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~--------~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~--~~ 231 (359)
|+++|++||+++++|.++ |... ........+..++|++++|.+|++|+|.+|+++++++++++++. +.
T Consensus 242 I~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~~~~~ 319 (464)
T PRK04311 242 LAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKKHPLK 319 (464)
T ss_pred HHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhhchhH
Confidence 999999999999999853 2221 01111222335899999999999999988999999999887652 11
Q ss_pred HhhC-CCcchhHHHHHHHHH--------HHH--HhHHHHhhhHHHHHHHHHHHHhcCC--Cc--eEecC----------C
Q 018243 232 KTLG-GGMRQVGVLCAAALV--------ALQ--ENVLVMLDGDHKKAKLLAEGLNQLK--GL--RVDVD----------A 286 (359)
Q Consensus 232 ~~~~-~~~~~~~~~~~~~~~--------~l~--~~~~~~~~~~~~~~~~l~~~l~~~~--g~--~~~~~----------~ 286 (359)
.... ......+..++.... .++ ..+..+.++..++++.+.+.|++.+ ++ ++... .
T Consensus 320 r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~ 399 (464)
T PRK04311 320 RALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPV 399 (464)
T ss_pred HHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcC
Confidence 1111 011111122211100 000 1122244667788999999998863 33 33321 1
Q ss_pred ccceEEEEEeccchHHHHHHHHHHHHhcCceec-cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM-PESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..-+...+.+.. .+.+..++.+.|++....+. .-..+.+.+-+. .+.++|++.++++|++++.
T Consensus 400 ~~~~~~~v~~~~-~~~~~~~l~~~lr~~~~~i~~r~~~~~~~ld~r-~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 400 DRLPSAAVTLTP-KDRSLEALAARLRLLPPPVIGRIEDGRLLLDLR-TLEEEDEERLAAALLEALN 463 (464)
T ss_pred CCCCeEEEEEeC-CCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence 112334455543 23578899999987554332 234555666665 6788999999999988754
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-21 Score=172.54 Aligned_cols=337 Identities=13% Similarity=0.109 Sum_probs=215.7
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---c-cCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---V-LMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|++.+++.+...... . ....+...++.+.+++.++ .+...+++||++|+..+++.
T Consensus 47 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKl 126 (466)
T PRK07030 47 KRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKM 126 (466)
T ss_pred CEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHH
Confidence 357899876 345556888888887554321 1 1235667788888888774 34568899999999999998
Q ss_pred hhhh------c-CCeEEecCC-CcceeeccccccccCCc------------cceeeecCCCC----C--------CCHHH
Q 018243 73 HCET------R-GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQDG----T--------MDIDL 120 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~----~--------~~~~~ 120 (359)
+... + ..+|+.-.. +|..+.. + ....+. .+..++.+... . -+++.
T Consensus 127 Ar~~~~~~g~t~r~~ii~~~~~yHG~t~g--a-~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~ 203 (466)
T PRK07030 127 SFHYWRNRGKPRKKRFVTLTNSYHGETLA--A-MSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAH 203 (466)
T ss_pred HHHHHHHhCCCCCcEEEEECCCcCcccHH--H-HhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHH
Confidence 8531 2 235665554 4443321 1 111111 12222222111 0 02455
Q ss_pred HHHHhcCCCCCccCCceeEEEEec-cccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCc
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLEN-THANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAA 198 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~-~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~ 198 (359)
+++.+++.. .++.+|++++ ...+ +|. ..+.+++++++++|++||+++|+||++..............+.-.+
T Consensus 204 le~~~~~~~-----~~iAAvi~EP~iqg~-gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P 277 (466)
T PRK07030 204 MEQTLAEHH-----DEIAAVIVEPLIQGA-GGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP 277 (466)
T ss_pred HHHHHHhCC-----CceEEEEEecccccC-CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC
Confidence 677776321 5799999998 4664 455 5667999999999999999999999974322221111112222356
Q ss_pred cEEEEeccccCCCce--eeEEecCHHHHHHHHHH-----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHH
Q 018243 199 DSASVCLSKGLGAPV--GSVIVGSKEFIKKARRL-----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLL 270 (359)
Q Consensus 199 d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l 270 (359)
|++++ +|.++++. -|.+++++++.+.+..- ....+.++..+++.++++...++...+ +..++..++.++|
T Consensus 278 Div~~--gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l 355 (466)
T PRK07030 278 DFLCL--SKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRM 355 (466)
T ss_pred CEEee--ehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77765 58775432 25577788888776421 113456666678888888888876544 3556777778888
Q ss_pred HHHHhcC---CCceEecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHH
Q 018243 271 AEGLNQL---KGLRVDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAND 338 (359)
Q Consensus 271 ~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~ 338 (359)
++.|+++ |.+.-. ...+.++.+.+..+. ......+.+.+.++|+.+.+.+ ..+|+.++..++++|
T Consensus 356 ~~~L~~l~~~~~v~~v--rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~Ppl~it~~e 432 (466)
T PRK07030 356 AEATAHLADHPHVAEV--RQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLG-SVVYFLPPYVITPEQ 432 (466)
T ss_pred HHHHHHHhcCCCEEEe--EeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHH
Confidence 8887765 222211 335666666663210 0123568888899999997754 589999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018243 339 VHYTLSCFQKIYAGV 353 (359)
Q Consensus 339 i~~~~~~l~~~~~~~ 353 (359)
+++++++++++++++
T Consensus 433 id~~~~~l~~al~~~ 447 (466)
T PRK07030 433 IDFLAEVASEGIDIA 447 (466)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999987
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-21 Score=170.67 Aligned_cols=337 Identities=18% Similarity=0.184 Sum_probs=211.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|++.+++.+..... ......+...++.+.+++.++ .+.+.+++||++|+..+++.
T Consensus 49 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkl 128 (445)
T PRK09221 49 RKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKI 128 (445)
T ss_pred CEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 367899876 33445588888887654331 111235667788888888874 35678999999999999998
Q ss_pred hhhh------c-CCeEEecCC-CcceeeccccccccCCc------------cceeeecCC---C--CCC--------CHH
Q 018243 73 HCET------R-GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQ---D--GTM--------DID 119 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~---~--~~~--------~~~ 119 (359)
+... + ..+|+.... +|+.+.. + ....+. .+..++.+. . +.. ..+
T Consensus 129 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~g--a-ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (445)
T PRK09221 129 ALAYHRARGQGTRTRLIGRERGYHGVGFG--G-ISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELAD 205 (445)
T ss_pred HHHHHHhcCCCCCcEEEEECCCcCccchh--h-hccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHH
Confidence 7642 1 235665444 4443321 1 111110 112222211 0 000 135
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQ 196 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~ 196 (359)
++++.+++.. ..++.+|++++...+ +|. ..+.+++++++++|++||+++|+||++... +..|.. ...+..
T Consensus 206 ~l~~~i~~~~----~~~iAavi~Epv~g~-~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~--GRtG~~~~~~~~gv 278 (445)
T PRK09221 206 DLERLVALHD----ASTIAAVIVEPMAGS-AGVLVPPKGYLQRLREICDKHGILLIFDEVITGF--GRLGAAFAAERFGV 278 (445)
T ss_pred HHHHHHHhcC----CCcEEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC--CcCchhhHHHhcCC
Confidence 6777775321 147889999998874 566 456799999999999999999999997421 112222 112222
Q ss_pred CccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH-----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHH
Q 018243 197 AADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR-----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKA 267 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 267 (359)
.+|++ +++|.+++ |.|+ +++++++.+.+..-. ...+.++..+++.++++...++...+ ...++..++.
T Consensus 279 ~PDi~--~~gK~l~gG~~Pi~a-v~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g 355 (445)
T PRK09221 279 TPDII--TFAKGLTNGAIPMGA-VIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELA 355 (445)
T ss_pred CCCEE--EeccccccCccccee-eEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45755 55677743 4445 677888877764210 12345566677777788877765533 3566777888
Q ss_pred HHHHHHHhcCCCce-EecCCccceEEEEEeccc---hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHH
Q 018243 268 KLLAEGLNQLKGLR-VDVDAVETNIVYFEITED---SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTL 343 (359)
Q Consensus 268 ~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~ 343 (359)
++|++.|+++.+.. +..-...+.+..+.+... ....+..+.+.|.++||.+.+.+ ..+|++++..++++++++++
T Consensus 356 ~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~-~~lr~~Ppl~~t~~eid~~~ 434 (445)
T PRK09221 356 PYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYTG-DTIALSPPLIIEKAQIDELV 434 (445)
T ss_pred HHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeecC-CEEEEECCccCCHHHHHHHH
Confidence 88888887763222 111122344444444321 11234678888999999986654 68999999999999999999
Q ss_pred HHHHHHHHHH
Q 018243 344 SCFQKIYAGV 353 (359)
Q Consensus 344 ~~l~~~~~~~ 353 (359)
++|+++++++
T Consensus 435 ~~l~~~l~~~ 444 (445)
T PRK09221 435 DALGDALRAV 444 (445)
T ss_pred HHHHHHHHhh
Confidence 9999999765
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-21 Score=172.70 Aligned_cols=340 Identities=16% Similarity=0.103 Sum_probs=213.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----cc-CCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VL-MHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|.+.+++.+...... .+ ..++...++.+.+++.++. +.+.+++||++|+..+++
T Consensus 50 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~Alk 129 (456)
T PRK07480 50 NKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLR 129 (456)
T ss_pred CEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHH
Confidence 357899876 344555888888877554321 11 2467778899999998853 467899999999999999
Q ss_pred Hhhhh------cC-CeEEecC-CCcceeeccccccccCCcc------------ceeeecCCCC----CCC--------HH
Q 018243 72 VHCET------RG-SEVILGD-NSHIHIYENGGISTIGGVH------------PRTVKNNQDG----TMD--------ID 119 (359)
Q Consensus 72 ~~~~~------~g-~~vl~~~-~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~----~~~--------~~ 119 (359)
.+..- ++ .+|+... .+|..+.. + ....+.. +..++.+..+ ..+ .+
T Consensus 130 lAr~~~~~~g~~~r~~ii~~~~~yHG~tl~--a-~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 206 (456)
T PRK07480 130 MVRHYWALKGKPQKKVIISRKNGYHGSTVA--G-ASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAAR 206 (456)
T ss_pred HHHHHHHhcCCCCCcEEEEECCCcCCcchh--h-hhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHH
Confidence 88642 22 3455444 45554332 1 1111111 1112211100 011 24
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQ 196 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~ 196 (359)
.+++.+.+. ...++.+|++++...+ .|. ..|.+++++++++|++||+++|+||++..... .|.. ...+..
T Consensus 207 ~l~~~~~~~----~~~~vAAvi~EPiqg~-gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR--tG~~~a~~~~gv 279 (456)
T PRK07480 207 QLEAKILEL----GADNVAAFIGEPIQGA-GGVIIPPATYWPEIQRICRKYDILLVADEVICGFGR--TGEWFGSQHFGI 279 (456)
T ss_pred HHHHHHHhc----CCCcEEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc--CcchhhhhhcCC
Confidence 555545321 1157899999998885 455 56779999999999999999999999743222 2221 122223
Q ss_pred CccEEEEeccccCCC---ceeeEEecCHHHHHHHHH-HH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhH-HHHHHH
Q 018243 197 AADSASVCLSKGLGA---PVGSVIVGSKEFIKKARR-LR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGD-HKKAKL 269 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~ 269 (359)
.+|++ +++|.+++ |.++ +++++++.+.+.. .. ...++++..+++.++++...++...+ ...++. .++.++
T Consensus 280 ~PDiv--~~gK~l~gG~~Pi~a-v~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~ 356 (456)
T PRK07480 280 KPDLM--TIAKGLTSGYIPMGA-VGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPY 356 (456)
T ss_pred CCCee--eeehhhccCCccceE-EEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56665 55688854 4455 5567788777531 11 13456777788888999988876544 244555 366677
Q ss_pred HHHHHhcCCCceEe-cCCccceEEEEEeccchH---------HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHH
Q 018243 270 LAEGLNQLKGLRVD-VDAVETNIVYFEITEDSK---------LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339 (359)
Q Consensus 270 l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i 339 (359)
|.+.|+++....+. .-...+.++.+.+..+.. .....+.+.+.++||.+.+.+ ..+|+.++..++++++
T Consensus 357 l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-~~l~~~Ppl~it~~ei 435 (456)
T PRK07480 357 LQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVG-DRMIISPPLVITHAEI 435 (456)
T ss_pred HHHHHHHhhcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecC-CEEEEECCCCCCHHHH
Confidence 77777654221110 112356666666632100 113467778889999997643 6899999888999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018243 340 HYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 340 ~~~~~~l~~~~~~~~~~ 356 (359)
++++++|+++++++.++
T Consensus 436 d~~~~~l~~al~~~~~~ 452 (456)
T PRK07480 436 DELVEKARKALDATAAE 452 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988654
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=164.84 Aligned_cols=284 Identities=18% Similarity=0.156 Sum_probs=209.4
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....++..++++.|.+.+++++||..|...++..++ ..|++|++....|..+.... .+....|++...++.+
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~---- 150 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD---- 150 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh----
Confidence 57789999999999999999999999999999999999 49999999988887765311 1233567777777655
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+++.+++.++ +++++||+++|.| |+..+.+ +++++++|+++|+++|||++ ++.. ....++.
T Consensus 151 -~~~~~~~~i~--------~~t~~V~~ESPsN-Pll~v~D---I~~l~~la~~~g~~vvVDnT--f~~p----~~~~pL~ 211 (409)
T KOG0053|consen 151 -DLKKILKAIK--------ENTKAVFLESPSN-PLLKVPD---IEKLARLAHKYGFLVVVDNT--FGSP----YNQDPLP 211 (409)
T ss_pred -hHHHHHHhhc--------cCceEEEEECCCC-Ccccccc---HHHHHHHHhhCCCEEEEeCC--cCcc----cccChhh
Confidence 7888888888 7899999998777 9988876 89999999999999999998 4332 2344444
Q ss_pred cCccEEEEeccccCCCc---eeeEEecC-HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVGS-KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
-++|+++.|.+|++++- .+|.++.+ +++.++++......|++. ++..+......++..-- ++++..+++..+.
T Consensus 212 lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~--~p~~~~ll~Rglktl~l-Ri~~~~ena~~~A 288 (409)
T KOG0053|consen 212 LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCE--DPFDLFLLSRGLKTLHL-RINKHSENALKIA 288 (409)
T ss_pred cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCC--CHHHHHHHhcCcchhhh-hHHHHHHHHHHHH
Confidence 48999999999999873 55777775 899999988888888776 56666666666665433 6777888888888
Q ss_pred HHHhcCCCce-EecC----------------CccceEEEEEeccchHHHHHHHHHHHHhc--Ccee--------ccC---
Q 018243 272 EGLNQLKGLR-VDVD----------------AVETNIVYFEITEDSKLYAACLLKKLEEH--GVLV--------MPE--- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gi~~--------~~~--- 321 (359)
+.|++.|.++ +..| ...+...++.... ...+.+|.+.|+-. +... .|.
T Consensus 289 ~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~--~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mt 366 (409)
T KOG0053|consen 289 LLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGN--EEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMT 366 (409)
T ss_pred HHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCC--HHHHHHHHHhhhhhhcccCcCccchhhcchhhhc
Confidence 8888876554 2222 1223333333332 23566677777432 2221 000
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++-+|+|+. -|+++.++..+.++++.+
T Consensus 367 h~~~~e~~~~~Gi~~~LVRvSVG----iEd~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 367 HASELEEREKFGIDPNLVRVSVG----IEDIEDLIKDFQQALEKA 407 (409)
T ss_pred cCCCHHHHHhcCCCCCcEEEEec----cCCHHHHHHHHHHHHHhh
Confidence 3456999994 478888888888888765
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-22 Score=182.67 Aligned_cols=310 Identities=16% Similarity=0.117 Sum_probs=206.9
Q ss_pred CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeee
Q 018243 31 DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK 109 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 109 (359)
++.+.+.....+.++..|+.||.+...+++|||+ ++.+++.+++ ++||+|++++.+|.|.+. + ..+.|++++++.
T Consensus 198 D~L~~p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~-a--l~L~ga~Pvyl~ 273 (755)
T PRK15029 198 GSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQ-G--LILTGAKPVYMV 273 (755)
T ss_pred CCCCCCCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHH-H--HHHcCCeEEEec
Confidence 3345566778999999999999999988888876 4555555566 699999999999999997 5 888999999984
Q ss_pred cCC-C----CCCC-----HHHHHHHhcCCCCCc--cCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec
Q 018243 110 NNQ-D----GTMD-----IDLIEAAIRDPKGEI--VYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177 (359)
Q Consensus 110 ~~~-~----~~~~-----~~~l~~~l~~~~~~~--~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~ 177 (359)
... . +.++ ++.++++++++++.. ...+++++++.+|. ..|++++ +++|+++|+++|++|++||
T Consensus 274 P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT--Y~Gv~~d---i~~I~~~~h~~~~~llvDE 348 (755)
T PRK15029 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT--YDGVCYN---AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_pred ccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC--CcceeeC---HHHHHHHHHhcCCeEEEEC
Confidence 332 1 3445 899999998764422 12345578884544 4699987 8999999999999999999
Q ss_pred ccccchhhhcCchh-Hhh-----h-cCcc-EEEEeccccCCCcee-eEEecCHH--HH--HHHHHHHHhhCCCcchhHHH
Q 018243 178 ARIFNAAVALGVPV-RRL-----V-QAAD-SASVCLSKGLGAPVG-SVIVGSKE--FI--KKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 178 a~~~~~~~~~~~~~-~~~-----~-~~~d-~~~~s~~K~~g~~~g-g~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~ 244 (359)
||+....+....+. ..+ . .++| +++.|.||++++... +++-.+.. .+ ++++..-..+. ++|++..+
T Consensus 349 AhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~q-STSPSY~L 427 (755)
T PRK15029 349 AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHA-TTSPLYAI 427 (755)
T ss_pred ccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHHc-CCCcHHHH
Confidence 97544332221111 222 2 4788 777799999977655 55554322 12 23333322222 34445555
Q ss_pred HHHHHHHH---HH-hHHHHhhhHHHHHHHHHHHHhcCCC-----------------------------------------
Q 018243 245 CAAALVAL---QE-NVLVMLDGDHKKAKLLAEGLNQLKG----------------------------------------- 279 (359)
Q Consensus 245 ~~~~~~~l---~~-~~~~~~~~~~~~~~~l~~~l~~~~g----------------------------------------- 279 (359)
.+....+- +. .-+...++..+.+..+++.+.++++
T Consensus 428 mASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 507 (755)
T PRK15029 428 CASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQ 507 (755)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhhcccc
Confidence 55544333 21 1223566677777888888876644
Q ss_pred -ceEecC--Cc-------------cceEEEEEeccchHHH---------HHHHHHHHHhcCceeccCCCcEEEEEeCCCC
Q 018243 280 -LRVDVD--AV-------------ETNIVYFEITEDSKLY---------AACLLKKLEEHGVLVMPESSTRVRIVVHHQI 334 (359)
Q Consensus 280 -~~~~~~--~~-------------~~~~~~~~~~~~~~~~---------~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~ 334 (359)
+.+..+ .. ...-+.+.++. .+.+ +..+.+.|+++||.+...+...+-+-++.+.
T Consensus 508 ~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~-~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~ 586 (755)
T PRK15029 508 DCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPG-MGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGV 586 (755)
T ss_pred ceeeecccccccCcccccccccccCCceEEEEcCC-CCCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCC
Confidence 111111 00 01113333322 1223 4489999999999998888888888888899
Q ss_pred CHHHHHHHHHHHHHHHH
Q 018243 335 SANDVHYTLSCFQKIYA 351 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~ 351 (359)
+++++++++++|.++-+
T Consensus 587 t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 587 TRGKWGTLVNTLCSFKR 603 (755)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988754
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=172.11 Aligned_cols=336 Identities=14% Similarity=0.066 Sum_probs=215.9
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ +....+|++.+++.+...... .....+...++.+.+++.++. +.+.+++||++|+..+++.
T Consensus 45 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Alkl 124 (427)
T TIGR00508 45 RRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKM 124 (427)
T ss_pred CEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 467899886 444555888888887544321 112356667888888888754 3568999999999999998
Q ss_pred hhhh------c-CCeEEecCCCcceeeccccccccCCcc-------------ceeeecCCC-C-----CCCHHHHHHHhc
Q 018243 73 HCET------R-GSEVILGDNSHIHIYENGGISTIGGVH-------------PRTVKNNQD-G-----TMDIDLIEAAIR 126 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~-~-----~~~~~~l~~~l~ 126 (359)
++.. + ..+|+..+.+|..... +. ..+.+.. ...++.+.. . .-|++++++.++
T Consensus 125 Ar~~~~~~~~~~r~~il~~~~~yHG~t~-~~-~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~ 202 (427)
T TIGR00508 125 ALQYWQAKGEKNRQKFLTIRSGYHGDTF-GA-MSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLME 202 (427)
T ss_pred HHHHHHhhCCCCccEEEEEcCCcCCccH-hh-hcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHH
Confidence 7742 1 2456655554433221 11 1111110 111111111 1 014567777776
Q ss_pred CCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEE
Q 018243 127 DPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASV 203 (359)
Q Consensus 127 ~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~ 203 (359)
+.. .++++|++++.....+|. ..+.+++++|+++|++||+++|+||+| .| ++..|.. ...+...+|+++
T Consensus 203 ~~~-----~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG-~Gr~G~~~~~~~~~v~pDi~~- 274 (427)
T TIGR00508 203 LHS-----DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TG-FGRTGKLFACEHAGVVPDILC- 274 (427)
T ss_pred hcC-----CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCCccchhhhcCCCCCEEE-
Confidence 421 468899999863334455 456799999999999999999999998 33 2333332 112223567665
Q ss_pred eccccCCCce--eeEEecCHHHHHHHHHHH---HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC
Q 018243 204 CLSKGLGAPV--GSVIVGSKEFIKKARRLR---KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 204 s~~K~~g~~~--gg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~ 277 (359)
++|.+++.. .+.++.++++.+.++... ...+.++..++..++++..+++...+ +..++..++.++|++.|+++
T Consensus 275 -~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l 353 (427)
T TIGR00508 275 -VGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPL 353 (427)
T ss_pred -echhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 689885432 366778888888765321 12344555567778888888864432 35667778888888888876
Q ss_pred CCce-EecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 278 KGLR-VDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 278 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.... +..-...+.++.+.+..+ .....+.+.|.++||.+.+.+ ..+|++++..++++|++++++++++++.+
T Consensus 354 ~~~~~i~~vrg~G~~~~i~~~~~--~~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 354 RKNPVVKDVRVLGAIGVVEMYKP--VNVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred hcCCCEEeEeccccEEEEEECCc--cCHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 2111 111123466666776542 246788999999999997654 57999998899999999999999998854
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-21 Score=171.18 Aligned_cols=338 Identities=17% Similarity=0.159 Sum_probs=212.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC---cc-CCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD---VL-MHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+...... .+ ..++...++.+.+++.+. .+.+.+++||++|+..+++.
T Consensus 46 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alkl 125 (442)
T PRK13360 46 RRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKI 125 (442)
T ss_pred CEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 357899876 334555888888877543211 11 235667788888988874 45678999999999999998
Q ss_pred hhhh------c-CCeEEecCCC-cceeeccccccccCC------------ccceeeecCCC-----CCC--------CHH
Q 018243 73 HCET------R-GSEVILGDNS-HIHIYENGGISTIGG------------VHPRTVKNNQD-----GTM--------DID 119 (359)
Q Consensus 73 ~~~~------~-g~~vl~~~~~-~~~~~~~~~~~~~~g------------~~~~~v~~~~~-----~~~--------~~~ 119 (359)
+... + ..+|+....+ |+.+.- + ....| ..+..++.+.+ +.. ..+
T Consensus 126 Ar~~~~~~g~~~r~~ii~~~~~yHG~t~g--a-ls~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 202 (442)
T PRK13360 126 ALAYHRARGEGSRTRLIGRERGYHGVGFG--G-ISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELAD 202 (442)
T ss_pred HHHHHHhcCCCCCcEEEEEcCCcCCccHh--h-hhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHH
Confidence 7742 1 2456655544 443321 1 11111 01122222211 000 145
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhcC
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQA 197 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~~ 197 (359)
.+++.++... ..++.+|++++...+ .|.. .+.+++++|+++|++||+++|+||+|. +|-.+.. .......-.
T Consensus 203 ~le~~l~~~~----~~~~aavivEpi~g~-~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~-~a~~~~gv~ 276 (442)
T PRK13360 203 ELERLVTLHD----ASTIAAVIVEPVAGS-TGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAP-FAAQYFGVT 276 (442)
T ss_pred HHHHHHHhcC----CCcEEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc-hhhhhcCCC
Confidence 6777775311 147889999998884 4554 667999999999999999999999983 4322211 111112224
Q ss_pred ccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH-----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 198 ADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR-----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 198 ~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
+|++ +++|.+++ |.|+ ++.++++.+.+..-. ...+.++..+++.++++..+++...+ ...++..++.+
T Consensus 277 PDiv--t~gK~l~gG~~P~ga-v~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~ 353 (442)
T PRK13360 277 PDLL--TCAKGLTNGAIPMGA-VFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAP 353 (442)
T ss_pred Ccee--eeeeccccCccceEE-EEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6655 66798853 5556 566878877754211 12345566677788888888865543 35566777888
Q ss_pred HHHHHHhcCCCceEec-CCccceEEEEEeccc---hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHH
Q 018243 269 LLAEGLNQLKGLRVDV-DAVETNIVYFEITED---SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLS 344 (359)
Q Consensus 269 ~l~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~ 344 (359)
++++.|+++....... -...+.+..+.+... ....+.++.+.|.++||.+.+.+ ..+|++++..+++++++++++
T Consensus 354 ~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~Ppl~~t~~eid~~~~ 432 (442)
T PRK13360 354 YWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG-DILALSPPLIIEEAQIDELFD 432 (442)
T ss_pred HHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC-CEEEEeCCCccCHHHHHHHHH
Confidence 8888887652221111 122333333443221 11245678888889999997654 689999999999999999999
Q ss_pred HHHHHHHHH
Q 018243 345 CFQKIYAGV 353 (359)
Q Consensus 345 ~l~~~~~~~ 353 (359)
+|+++++++
T Consensus 433 ~l~~~l~~~ 441 (442)
T PRK13360 433 ILAQALKET 441 (442)
T ss_pred HHHHHHHHh
Confidence 999998764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=169.37 Aligned_cols=339 Identities=19% Similarity=0.152 Sum_probs=226.8
Q ss_pred ccccccCC----CCCChHHHHHHHHHcCCCCCCc-----cCCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSD----TVTKPTEAMRAAMASAEVDDDV-----LMHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~~l~ 71 (359)
++||=.|+ +...-+|++.+++.+....... +...| ..+|.+.|+++.+ .+.++++.|||+|+..+++
T Consensus 45 r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlK 123 (449)
T COG0161 45 RYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALK 123 (449)
T ss_pred EEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHH
Confidence 34454443 4455568888888875543222 22344 8899999999998 5567899999999999999
Q ss_pred Hhhh------hcCC-eEE-ecCCCcceeeccccccccCCc-------------cceeeecCC------CCCC------CH
Q 018243 72 VHCE------TRGS-EVI-LGDNSHIHIYENGGISTIGGV-------------HPRTVKNNQ------DGTM------DI 118 (359)
Q Consensus 72 ~~~~------~~g~-~vl-~~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~------~~~~------~~ 118 (359)
.+.. ++.. +++ ..+.+|..++- + ....|. .+..++.+. ++.- ..
T Consensus 124 ma~qY~~~~G~p~r~~~Isr~~gYHG~T~g-a--~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a 200 (449)
T COG0161 124 MALQYWRARGQPQRKKFISRRNGYHGDTLG-A--MSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAA 200 (449)
T ss_pred HHHHHHHhcCCCcceEEEEeccCcCcccch-h--eeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHH
Confidence 9854 3333 244 55666666653 1 222221 111222111 1111 25
Q ss_pred HHHHHHhcCCCCCccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-
Q 018243 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ- 196 (359)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~- 196 (359)
++|++.+.++. -+++.++++++...-.+|+. +|..++++++++|++||+++|.||+ .-+++..|..+..-..
T Consensus 201 ~~le~~i~~~g----~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV--~tGFGRTG~~FA~e~~g 274 (449)
T COG0161 201 DELEALILEHG----PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV--ATGFGRTGKMFACEHAG 274 (449)
T ss_pred HHHHHHHHhcC----cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc--eeCCCcCchhhhhhhcC
Confidence 66777777532 15788999999998547875 5569999999999999999999998 4444444544433322
Q ss_pred -CccEEEEeccccCCCcee--eEEecCHHHHHHHHHH---HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHH
Q 018243 197 -AADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRL---RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKL 269 (359)
Q Consensus 197 -~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 269 (359)
.+|++ +++|.+.+..- |.++.++++.+.+..- .-..|.+++..++.+++++..++-..+ ..+++..+...+
T Consensus 275 i~PDi~--~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~ 352 (449)
T COG0161 275 IVPDIL--CLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAY 352 (449)
T ss_pred CCCCee--eecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44544 66688744222 4466677777776532 224678888889999999999976653 466777788888
Q ss_pred HHHHHhc-CCCceEec-CCccceEEEEEeccchH-------HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHH
Q 018243 270 LAEGLNQ-LKGLRVDV-DAVETNIVYFEITEDSK-------LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVH 340 (359)
Q Consensus 270 l~~~l~~-~~g~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~ 340 (359)
|.+.|++ +++...+. -+..+.+.-+.+..+.. .-...+.+.+.++|+.++|. ...+-+++.+.+++++++
T Consensus 353 l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid 431 (449)
T COG0161 353 LQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEID 431 (449)
T ss_pred HHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHH
Confidence 8888887 43222111 13456665666654311 12567888889999999998 458888888899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 018243 341 YTLSCFQKIYAGVCE 355 (359)
Q Consensus 341 ~~~~~l~~~~~~~~~ 355 (359)
++++++.+.+++...
T Consensus 432 ~l~~~l~~al~~~~~ 446 (449)
T COG0161 432 ELVDALREALDETLA 446 (449)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=169.31 Aligned_cols=342 Identities=17% Similarity=0.116 Sum_probs=215.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+...... ....++...++.+.+++.++ .+...+++||++|+..+++.
T Consensus 30 ~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~Alkl 109 (443)
T PRK07483 30 KRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKL 109 (443)
T ss_pred CEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHH
Confidence 467999886 344556888888887654321 11235667788888888874 35678999999999999998
Q ss_pred hhhh------cC-CeEEe-cCCCcceeeccccccccCCc------------cceeeecCCCCC-C----C--------HH
Q 018243 73 HCET------RG-SEVIL-GDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGT-M----D--------ID 119 (359)
Q Consensus 73 ~~~~------~g-~~vl~-~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~-~----~--------~~ 119 (359)
+..- ++ .+|+. ...+|..+.. + ....+. .+..++....++ . + ++
T Consensus 110 Ar~~~~~~g~~~r~~Ii~~~~~YHG~t~~--a-~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (443)
T PRK07483 110 ARQYFVEIGQPQRRHFIARRQSYHGNTLG--A-LAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLAD 186 (443)
T ss_pred HHHHHHhcCCCCCcEEEEECCCcCCcCHH--H-hhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHH
Confidence 8742 23 35665 4445544332 1 111110 112222111111 0 0 24
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQ 196 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~ 196 (359)
++++.+... +.+++.+|++++......|. ..+.+++++++++|++||+++|+||++..... .|.... .+..
T Consensus 187 ~l~~~~~~~----~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGR--tG~~~a~~~~gv 260 (443)
T PRK07483 187 ELEAKILEL----GPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGR--TGTLFACEEDGV 260 (443)
T ss_pred HHHHHHHhc----CCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCccc--CcHHHHHhhcCC
Confidence 566655421 11578999999987532354 56679999999999999999999999753222 232211 2223
Q ss_pred CccEEEEeccccCCCce--eeEEecCHHHHHHHHHHH--HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV--GSVIVGSKEFIKKARRLR--KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLA 271 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~ 271 (359)
.+|++++ +|.++++. -|.++.++++.+.+.... ...++++..+++.++++...++...+ ...++..++.++|+
T Consensus 261 ~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 261 APDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR 338 (443)
T ss_pred CCCeeee--hhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5676655 68875432 255667888877764211 12456666678888888888865543 35566777777777
Q ss_pred HHHhcC-CCce-EecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCC-------CcEEEEEeCCC
Q 018243 272 EGLNQL-KGLR-VDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPES-------STRVRIVVHHQ 333 (359)
Q Consensus 272 ~~l~~~-~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~-------~~~lRi~~~~~ 333 (359)
+.|+++ .... +..-...+.++.+.+..+. ......+.+.+.++|+.+.+.+ .+.+|+.++..
T Consensus 339 ~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~ 418 (443)
T PRK07483 339 ARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFI 418 (443)
T ss_pred HHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCC
Confidence 777652 1111 1111345555555553210 0124578888899999996543 36899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 018243 334 ISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 334 ~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
++++++++++++|+++++++..
T Consensus 419 it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 419 ITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=155.78 Aligned_cols=300 Identities=16% Similarity=0.191 Sum_probs=186.3
Q ss_pred ccCCChHHHHHHHHHHHH----hCCC---CeEEcCCchHHHHHHHHHhhhh---cC--CeEEec-CCCcceeeccccccc
Q 018243 33 VLMHDPTAFRLETEMAKV----MGKE---AGLFVPSGTMGNLISVLVHCET---RG--SEVILG-DNSHIHIYENGGIST 99 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~----~~~~---~~~~~~~gt~a~~~~l~~~~~~---~g--~~vl~~-~~~~~~~~~~~~~~~ 99 (359)
.|+..++...+-+.+++. +|+. ..+..++|++..+.-+..++.. .| .+|++| .|.|..+-. +.
T Consensus 69 nY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d----~~ 144 (417)
T COG3977 69 NYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD----AG 144 (417)
T ss_pred cCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccc----cc
Confidence 366666666665555554 4543 3489999999888888777642 12 245544 444433322 22
Q ss_pred cCCccceeeecC--------CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCc
Q 018243 100 IGGVHPRTVKNN--------QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171 (359)
Q Consensus 100 ~~g~~~~~v~~~--------~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~ 171 (359)
+-+--.+.+..+ -.+.+|.++|. +. +.+.+|+++- +.||||.+.+.+++.++-.++++||+
T Consensus 145 l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~--------e~~g~ic~SR-PtNPTGNVlTdeE~~kldalA~~~gi 213 (417)
T COG3977 145 LEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG--------ESTGAICVSR-PTNPTGNVLTDEELAKLDALARQHGI 213 (417)
T ss_pred cCccceeeccCCcccccccceeeccCHHHcc--cc--------cccceEEecC-CCCCCCCcccHHHHHHHHHHhhhcCC
Confidence 222122222111 12566877765 33 5788999855 55599999999999999999999999
Q ss_pred EEEEecccccchhhhcCchhHhh--hcCccEE-EEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcc-hhHHHH
Q 018243 172 KLHIDGARIFNAAVALGVPVRRL--VQAADSA-SVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMR-QVGVLC 245 (359)
Q Consensus 172 ~li~D~a~~~~~~~~~~~~~~~~--~~~~d~~-~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (359)
++++|.||+. ++.+.-+.+. .++.+++ .+|+|| +|.|+- |+++.++++++.+.++....+.... ..+.++
T Consensus 214 PliIDnAYg~---PFP~iifsd~~~~w~~NiilC~SLSK-~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia 289 (417)
T COG3977 214 PLIIDNAYGV---PFPGIIFSDATPLWNENIILCMSLSK-LGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIA 289 (417)
T ss_pred cEEEecccCC---CCCceecccccccCCCCEEEEeehhh-cCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHH
Confidence 9999999532 2233322222 1345554 459999 577654 8999999999997766543332221 122222
Q ss_pred HHHHH--HHHHhHHH-----HhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCcee
Q 018243 246 AAALV--ALQENVLV-----MLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 246 ~~~~~--~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
+-++. .+...-++ .+++.+.....|+..|.+. .+.++. |.+.-|+|+-+.+ ..++.+++.++|+++|+.+
T Consensus 290 ~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~~iHk-pEGAIFlWLWf~d-LPItt~~LYq~LKa~Gvl~ 366 (417)
T COG3977 290 AEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RCLIHK-PEGAIFLWLWFKD-LPITTEELYQRLKARGVLM 366 (417)
T ss_pred HHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-ceeeec-CCcceeehhhhcc-CCCCHHHHHHHHHhCeEEE
Confidence 22211 12122121 2223333344455555444 344433 4466667777665 3468999999999999999
Q ss_pred ccCC-------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 319 MPES-------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 319 ~~~~-------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+|+. ..|+|++. .-+++.++..+.+|.+.+++.-.+
T Consensus 367 VPG~~FFpGl~~ewpH~hqC~Rmn~--~~~~~~ie~Gva~lae~ve~~yq~ 415 (417)
T COG3977 367 VPGHYFFPGLDKEWPHTHQCMRMNY--VPEPEKIEKGVAILAEEVERAYQE 415 (417)
T ss_pred ecccccCCCCCCCCCCccceEEEec--CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 8873 34699998 578899999999999998876543
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-21 Score=171.71 Aligned_cols=336 Identities=18% Similarity=0.206 Sum_probs=215.5
Q ss_pred cccccccCC---CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD---TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~---~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.+. +....+|.+.+++.+....... ....+...++.+.++++++. +...+++||++|+..+++.+.
T Consensus 72 ~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr 151 (459)
T PRK06082 72 KKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLAR 151 (459)
T ss_pred CEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHH
Confidence 357898743 2334558888888875543211 12357778999999999864 356889999999999999887
Q ss_pred hhcC-CeEE-ecCCCcceeeccccccccCCc------------cceeeecCCCCC--C-C--------HHHHHHHhcCCC
Q 018243 75 ETRG-SEVI-LGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGT--M-D--------IDLIEAAIRDPK 129 (359)
Q Consensus 75 ~~~g-~~vl-~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~--~-~--------~~~l~~~l~~~~ 129 (359)
.-.| .+|+ +....|+.+.. + ....+. .+..++.+.... . + ++.+++.+++.
T Consensus 152 ~~tgr~~ii~~~~~yHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~- 227 (459)
T PRK06082 152 HITGNFKVVSLWDSFHGASLD--A-ISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE- 227 (459)
T ss_pred HhcCCCEEEEEeCCCcCccHH--H-HhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-
Confidence 4333 3455 44555555432 1 111111 112222111100 0 1 24577777631
Q ss_pred CCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccc
Q 018243 130 GEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSK 207 (359)
Q Consensus 130 ~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K 207 (359)
.++.+|++++..+. ++.+.+.+++++++++|++||+++|+||++... +..|.. ...+.-.+|+++ ++|
T Consensus 228 -----~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~--GRtG~~fa~e~~gv~PDiv~--~gK 297 (459)
T PRK06082 228 -----GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGM--GRTGEWFTHQAYGIEPDILC--IGK 297 (459)
T ss_pred -----CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC--CccchhhHhHhhCCCCCEEE--ecc
Confidence 46889999998874 456778899999999999999999999997532 222322 112223577665 679
Q ss_pred cCCC---ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC---Cc
Q 018243 208 GLGA---PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK---GL 280 (359)
Q Consensus 208 ~~g~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~---g~ 280 (359)
.+++ |. |.+++++++..... ..... .++..+++.++++...++...+ +..++..++.++|++.|+++. ++
T Consensus 298 gl~gG~~P~-~av~~~~~i~~~~~-~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 374 (459)
T PRK06082 298 GLGGGLVPI-AAMITKDKYNTAAQ-ISLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPL 374 (459)
T ss_pred cccCCCCcc-eEEEEcHHHHhhcc-CCCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8864 33 44556666654321 11111 4556677888888888865543 356677778888888887641 22
Q ss_pred eEecCCccceEEEEEeccc------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITED------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.... ...+.++.+.+..+ .......+...+.++|+.+.+.+.+.+|+++...+++++++++++++++++.++.
T Consensus 375 i~~v-rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~ 453 (459)
T PRK06082 375 IGDV-RGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKIC 453 (459)
T ss_pred eeee-eeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 1111 34566666666421 0112456778888999999876678999999889999999999999999998875
Q ss_pred hh
Q 018243 355 EE 356 (359)
Q Consensus 355 ~~ 356 (359)
+.
T Consensus 454 ~~ 455 (459)
T PRK06082 454 QD 455 (459)
T ss_pred hh
Confidence 43
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=172.95 Aligned_cols=338 Identities=14% Similarity=0.137 Sum_probs=216.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|++.+++.+..... .....++...++.+.|+++++. +...+++||++|+..+++.
T Consensus 56 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~Alkl 135 (460)
T PRK06916 56 NEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKM 135 (460)
T ss_pred CEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHH
Confidence 367898876 33455688888888755431 1122456678888999998754 4568999999999999998
Q ss_pred hhh------hc-CCeEEecCC-CcceeeccccccccCCc------------cceeeecCCC------CC------CCHHH
Q 018243 73 HCE------TR-GSEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQD------GT------MDIDL 120 (359)
Q Consensus 73 ~~~------~~-g~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~------~~------~~~~~ 120 (359)
+.. .+ ..+|+.-+. +|+.+.. + ....+. .+..++.+.. .. -+++.
T Consensus 136 Ar~~~~~~g~tgr~~ii~~~~~YHG~t~~--a-ls~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~ 212 (460)
T PRK06916 136 AFQYWQNKGKPKKQRFVTLKNAYHGDTIG--A-VSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEE 212 (460)
T ss_pred HHHHHHhcCCCCCcEEEEECCcCCcccHH--h-HhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHH
Confidence 874 12 245665554 4443322 1 222211 1122222110 00 13456
Q ss_pred HHHHhcCCCCCccCCceeEEEEec-cccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--Hhhhc
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLEN-THANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQ 196 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~-~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~ 196 (359)
+++.+++.. .++.+|++++ ...+ +|+ ++|.+++++++++|++||+++|+||++... +..|... ..+.-
T Consensus 213 l~~~l~~~~-----~~iAAvi~EP~iqg~-gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~--GRtG~~~a~~~~gv 284 (460)
T PRK06916 213 LEELLKEKH-----EEIAAIIVEPLVQGA-GGMITMPKGYLKGLRNLCTKYNVLFITDEVATGF--GRTGKMFACEHENV 284 (460)
T ss_pred HHHHHHhCC-----CcEEEEEEeccccCC-CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCC--CcCchhhHHHhcCC
Confidence 677776321 5799999999 4664 455 467899999999999999999999997432 2223221 12223
Q ss_pred CccEEEEeccccCCCce-e-eEEecCHHHHHHHHHH-----HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRL-----RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
.+|+++ ++|.++++. . |.+++++++.+.+..- ....+.++..+++.++++...++...+ ...++..++.+
T Consensus 285 ~PDiv~--~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~ 362 (460)
T PRK06916 285 TPDIMT--AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTE 362 (460)
T ss_pred CCCeee--eehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 567664 568775432 2 5567788887765321 112445665677888888888865543 35667777788
Q ss_pred HHHHHHhcCCCce-EecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHH
Q 018243 269 LLAEGLNQLKGLR-VDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAND 338 (359)
Q Consensus 269 ~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~ 338 (359)
++++.|+++.... +..-...+.++.+.+..+. ......+...+.++||.+.+.+ ..+|+.++..++++|
T Consensus 363 ~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~l~~~Ppl~it~~~ 441 (460)
T PRK06916 363 YVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-NTIVFMPPLASTIDE 441 (460)
T ss_pred HHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHH
Confidence 8888887652211 1111234555555553210 0113578888899999997764 689999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018243 339 VHYTLSCFQKIYAGVC 354 (359)
Q Consensus 339 i~~~~~~l~~~~~~~~ 354 (359)
+++++++|+++++++.
T Consensus 442 id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 442 LDEMLRILYKAISDVT 457 (460)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=176.65 Aligned_cols=292 Identities=20% Similarity=0.245 Sum_probs=185.8
Q ss_pred CccCCChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+.+.+.....+.++..|+.||.+.++++++||+ ++..++.+++ ++||+|++++.+|.|.+. + ..+.|+++++++.
T Consensus 60 ~L~~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~-a--lil~ga~Pvyi~p 135 (417)
T PF01276_consen 60 DLHDPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYN-A--LILSGAIPVYIPP 135 (417)
T ss_dssp BTTTTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHH-H--HHHHTEEEEEEEE
T ss_pred cccCCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHH-H--HHHcCCeEEEecC
Confidence 345556678999999999999999988888876 5556666666 699999999999999997 5 7888999999844
Q ss_pred C-CC----CCCCH-----HHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccc
Q 018243 111 N-QD----GTMDI-----DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180 (359)
Q Consensus 111 ~-~~----~~~~~-----~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 180 (359)
. .. +.++. +.+++.++++++.. ..++|++.+|. ..|++++ +++|+++|++++++|+|||||+
T Consensus 136 ~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k---~~~~vvlt~PT--Y~Gv~~d---i~~I~~~~h~~~~~llvDEAhG 207 (417)
T PF01276_consen 136 EDNEYGIIGGISPDEFNEEDIEEALKEHPDAK---APRLVVLTSPT--YYGVCYD---IKEIAEICHKHGIPLLVDEAHG 207 (417)
T ss_dssp EE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH---CESEEEEESS---TTSEEE----HHHHHHHHCCTECEEEEE-TT-
T ss_pred CccccCCccCCChhhhhHHHHHHHHHhCcccc---CceEEEEeCCC--CCeEEEC---HHHHHHHhcccCCEEEEEcccc
Confidence 3 22 34566 99999999764331 24558885544 4699988 8999999999999999999975
Q ss_pred cchhhhcCchhHhhhcCcc-------EEEEeccccCCCcee-eEEecCHH---HHHHHHHHHHhhCCCcchhHHHHHHHH
Q 018243 181 FNAAVALGVPVRRLVQAAD-------SASVCLSKGLGAPVG-SVIVGSKE---FIKKARRLRKTLGGGMRQVGVLCAAAL 249 (359)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~d-------~~~~s~~K~~g~~~g-g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (359)
....+. ..+...+..++| +++.|.||++++... +++..+.+ -.++++..-..+. ++|++.++.+...
T Consensus 208 ah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~-TTSPSY~lmASlD 285 (417)
T PF01276_consen 208 AHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQ-TTSPSYPLMASLD 285 (417)
T ss_dssp TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS--SS--HHHHHHHH
T ss_pred ccccCC-CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHc-CCChHHHHHHHHH
Confidence 433322 222233445788 999999999987655 66655333 2244443333222 2444555555554
Q ss_pred HHHHHh----HHHHhhhHHHHHHHHHHHH---hcCCCceEecCCc----------------------------cceEEEE
Q 018243 250 VALQEN----VLVMLDGDHKKAKLLAEGL---NQLKGLRVDVDAV----------------------------ETNIVYF 294 (359)
Q Consensus 250 ~~l~~~----~~~~~~~~~~~~~~l~~~l---~~~~g~~~~~~~~----------------------------~~~~~~~ 294 (359)
.+.... -+...++..+++..+++.+ .+++++.+..++. ...-+.+
T Consensus 286 ~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti 365 (417)
T PF01276_consen 286 VARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTI 365 (417)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEE
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEE
Confidence 443222 2236677778888888888 5566666543320 0111444
Q ss_pred Eec--------cchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHH
Q 018243 295 EIT--------EDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 295 ~~~--------~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~ 337 (359)
.++ ...|+.+..+.+.|+++||.+.-.+...+-+-++++.+++
T Consensus 366 ~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 366 NTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE 416 (417)
T ss_dssp E-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred EccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence 442 1246789999999998999997777777777777777764
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=170.00 Aligned_cols=337 Identities=21% Similarity=0.202 Sum_probs=212.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc-----cCCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV-----LMHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~~l 70 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.+++.++ .+...+++||++|+..|+
T Consensus 42 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~Al 121 (449)
T PRK07481 42 KKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETAL 121 (449)
T ss_pred CEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHH
Confidence 357899875 4445558888888775543211 1245777888889999874 345688999999999999
Q ss_pred HHhhhh------cC-CeEEecCC-CcceeeccccccccCCc------------cceeeecCCC----CC-CCHHH-----
Q 018243 71 LVHCET------RG-SEVILGDN-SHIHIYENGGISTIGGV------------HPRTVKNNQD----GT-MDIDL----- 120 (359)
Q Consensus 71 ~~~~~~------~g-~~vl~~~~-~~~~~~~~~~~~~~~g~------------~~~~v~~~~~----~~-~~~~~----- 120 (359)
+.+..- ++ .+|+.-+. +|+.+.. + ....+. .+..++.+.. +. -|.+.
T Consensus 122 klAr~~~~~~g~~~r~~ii~~~~~yHG~t~g--a-~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~ 198 (449)
T PRK07481 122 KLARQYWKVRGQPERTKFISLKQGYHGTHFG--G-ASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARIC 198 (449)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCCcchh--h-hccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHH
Confidence 988641 22 35665444 4443321 1 111110 1122221110 11 13333
Q ss_pred ---HHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhh
Q 018243 121 ---IEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRL 194 (359)
Q Consensus 121 ---l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~ 194 (359)
+++.+.. .+.+++.+|++++...+ +|. .++.+++++++++|++||+++|.||++..... .+.. ...+
T Consensus 199 ~~~le~~i~~----~~~~~iAAviiEPvqg~-gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGR--tG~~~a~~~~ 271 (449)
T PRK07481 199 ARLLEREIAF----QGPDTIAAFIAEPVQGA-GGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGR--TGSWFGSRGW 271 (449)
T ss_pred HHHHHHHHHh----cCCCcEEEEEEecccCC-cCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCc--CchhhHhhhc
Confidence 3333431 11157999999998875 455 56779999999999999999999999753222 2221 1122
Q ss_pred hcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHH-----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHH
Q 018243 195 VQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLR-----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHK 265 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 265 (359)
.-.+|++++ +|.+++ |.++ +++++++.+.+.... ...++++..+++.++++...++...+ +..++..+
T Consensus 272 gv~PDiv~~--gKgl~gG~~Pi~a-v~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~ 348 (449)
T PRK07481 272 GVKPDIMCL--AKGITSGYVPLGA-TMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAK 348 (449)
T ss_pred CCCCCEEEE--eecccCCCcCceE-EEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 235676655 588754 4444 667778877764211 13455666678888888888876543 35566777
Q ss_pred HHHHHHHHHhcCC---CceEecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCC
Q 018243 266 KAKLLAEGLNQLK---GLRVDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQ 333 (359)
Q Consensus 266 ~~~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~ 333 (359)
+.++|.+.|+++. ++.... ...+.++.+.+..+. ......+.+.+.++|+.+.+.+ ..+|+++...
T Consensus 349 ~g~~l~~~L~~l~~~~~~i~~v-rG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~ 426 (449)
T PRK07481 349 RGAYLLEGLQPLKERFELVGDV-RGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLV 426 (449)
T ss_pred HHHHHHHHHHHHhhcCCCeEEE-eecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCC
Confidence 7788887777641 211111 235666666653210 1234578888889999997765 4689998888
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 018243 334 ISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 334 ~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++++|+++++++++++++++.
T Consensus 427 it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 427 IQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998753
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=171.92 Aligned_cols=332 Identities=19% Similarity=0.186 Sum_probs=209.8
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCCcc-CCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDDVL-MHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++. ....+|.+.+++.+.......+ ...+...++.+.+++.++ .+...+++|||+|+..+++.+..-
T Consensus 99 ~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 99 NEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred CEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh
Confidence 3578987762 3444589998888765443332 235566778888888774 456689999999999999988754
Q ss_pred cCC-eEEecCC-Ccceeeccccc-----c-----ccCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 77 RGS-EVILGDN-SHIHIYENGGI-----S-----TIGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 77 ~g~-~vl~~~~-~~~~~~~~~~~-----~-----~~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
.|. +|+.... +|......... . ...+. .++.++.+ |++.+++.++++. .+++
T Consensus 179 tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~-----~~iA 248 (474)
T PLN02482 179 TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEANK-----GEIA 248 (474)
T ss_pred cCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhCC-----CceE
Confidence 443 5554444 44432110000 0 00111 11222322 7889998887432 4688
Q ss_pred EEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC--ceee
Q 018243 139 LICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA--PVGS 215 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~--~~gg 215 (359)
+|++++..++ .|.+. +.+++++++++|++||+++|+||++. |.....+.....+...+|++ +++|.+|+ |.|+
T Consensus 249 avI~Epv~g~-~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~--t~gK~lggG~Piga 324 (474)
T PLN02482 249 AVILEPVVGN-SGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLT--TLGKVIGGGLPVGA 324 (474)
T ss_pred EEEECCCCCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEE--EecchhhCCCceEE
Confidence 9999999885 46554 46999999999999999999999984 33332221122222356765 56788854 4555
Q ss_pred EEecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCccce
Q 018243 216 VIVGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETN 290 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~ 290 (359)
+++++++++.+.... ...+++++.+++.++++...++...+ +..++..++.++|++.|+++ -++.+......+
T Consensus 325 -v~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g- 402 (474)
T PLN02482 325 -YGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISG- 402 (474)
T ss_pred -EEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccce-
Confidence 478889988864211 23455666677888888888865533 36667777888888888764 123322112122
Q ss_pred EEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.+.+..+ +......+.+.|.++||.+.+.+... + .++..++++|+|++++++++++++
T Consensus 403 ~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~-~-~psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 403 MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA-G-FTSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC-C-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence 333333210 11234578888889999997643221 1 256689999999999999998875
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=171.67 Aligned_cols=337 Identities=16% Similarity=0.167 Sum_probs=211.4
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC-c---cCCChHHHHHHHHHHHHhCCC-----CeEEc-CCchHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD-V---LMHDPTAFRLETEMAKVMGKE-----AGLFV-PSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~~~-----~~~~~-~~gt~a~~~ 68 (359)
.++|||.++ +....+|.+.+++.+...... . ...++...++.+.+.+.+... ..+++ +||++|+..
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~ 142 (464)
T PRK06938 63 RQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEA 142 (464)
T ss_pred CEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHH
Confidence 367899876 334556999999987653211 1 123566677778888776532 23455 699999999
Q ss_pred HHHHhhhhcCC-eEEecC-CCcceeeccccccccCC----------c--cceeeecCCCCC------------CCHHHHH
Q 018243 69 SVLVHCETRGS-EVILGD-NSHIHIYENGGISTIGG----------V--HPRTVKNNQDGT------------MDIDLIE 122 (359)
Q Consensus 69 ~l~~~~~~~g~-~vl~~~-~~~~~~~~~~~~~~~~g----------~--~~~~v~~~~~~~------------~~~~~l~ 122 (359)
+++.+...+|. +|+... .+|..+.. + ....+ . .+..++.+.+.. .+++.++
T Consensus 143 AlklAr~~tgr~~ii~~~~~yHG~t~~--a-ls~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 219 (464)
T PRK06938 143 ALKLVKTATGRSTVLSFQGGYHGMSQG--A-LSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLE 219 (464)
T ss_pred HHHHHHHhhCCCeEEEECCccCCccHH--H-HhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHH
Confidence 99998754443 455444 45544322 1 11111 0 122333221111 1256777
Q ss_pred HHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCcc
Q 018243 123 AAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAAD 199 (359)
Q Consensus 123 ~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d 199 (359)
+.+++..+. ..++.+|++++...+ .|. +.|.+++++++++|++||+++|+||++..... .|.. ...+.-.+|
T Consensus 220 ~~i~~~~~~--~~~iAAvI~EPiqg~-gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGR--tG~~~a~e~~gv~PD 294 (464)
T PRK06938 220 NLLDDPESG--VVLPAAVILEVVQGE-GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGR--TGKMFAFEHAGIIPD 294 (464)
T ss_pred HHHHhhccC--CCceEEEEEccccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc--CcHHHHHHhcCCCCC
Confidence 777632111 136899999998885 455 45689999999999999999999999753322 2321 112223567
Q ss_pred EEEEeccccCCC--ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc
Q 018243 200 SASVCLSKGLGA--PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 200 ~~~~s~~K~~g~--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~ 276 (359)
++++ +|.+|+ |.++ +++++++ +.+. ....+.++..+++.++++...++...+ +..++..++.++|.+.|++
T Consensus 295 iv~~--gKglggG~PlsA-v~~~~~~-~~~~--~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~ 368 (464)
T PRK06938 295 VVVL--SKAIGGSLPLAV-VVYREWL-DTWQ--PGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQ 368 (464)
T ss_pred EEEe--eccccCCCceEE-EeehhHh-hccC--CCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7765 577743 4445 4455554 4332 123566777778888888888876544 3555666677777777765
Q ss_pred C-C--CceEecCCccceEEEEEeccch------------HHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHH
Q 018243 277 L-K--GLRVDVDAVETNIVYFEITEDS------------KLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDV 339 (359)
Q Consensus 277 ~-~--g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i 339 (359)
+ . ++.... ...+.++.+.+..+. ......+...+.++|+.+.+.+ ...+|+.++..++++|+
T Consensus 369 l~~~~~~i~~V-rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~ei 447 (464)
T PRK06938 369 LQRDYPQLGDV-RGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQI 447 (464)
T ss_pred HHHhCCCeeee-eccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHH
Confidence 4 1 221111 345666666663210 1124567888889999987654 47899999889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018243 340 HYTLSCFQKIYAGVC 354 (359)
Q Consensus 340 ~~~~~~l~~~~~~~~ 354 (359)
+++++++++++.++.
T Consensus 448 d~~~~~l~~~l~~~~ 462 (464)
T PRK06938 448 DEVAEIFAEAVAAAV 462 (464)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=155.33 Aligned_cols=327 Identities=17% Similarity=0.160 Sum_probs=224.2
Q ss_pred cccccccCCCC----CChHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTV----TKPTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~----~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
++++||-+.+. ...||.+.+++.+..+.-... -+.....++++.+.++||.+..+-+++|.+|++.++..++.
T Consensus 59 k~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~ 138 (427)
T KOG1402|consen 59 KEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARK 138 (427)
T ss_pred cchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHH
Confidence 46788888633 355699999998755432211 12345678899999999999998899999999999998873
Q ss_pred h-------cCC-e-EEecCCCcceeeccccccccCCcc-------------ceeeecCCCCCCCHHHHHHHhcCCCCCcc
Q 018243 76 T-------RGS-E-VILGDNSHIHIYENGGISTIGGVH-------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 76 ~-------~g~-~-vl~~~~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
+ |.+ . |+....+++.... + ...+.+-. +..++.+ |.++|+..+++
T Consensus 139 wgy~~K~ip~nka~il~~~~nFhGrT~-~-ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~------ 205 (427)
T KOG1402|consen 139 WGYRKKNIPKNKAKILSAENNFHGRTL-G-AISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKS------ 205 (427)
T ss_pred HHHhhccCCccceeEEEecccccCcee-e-eEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcC------
Confidence 1 222 2 3333333322221 1 12222211 2222333 89999999997
Q ss_pred CCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-hh-hcCccEEEEeccccCC
Q 018243 134 YPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RL-VQAADSASVCLSKGLG 210 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~-~~~~d~~~~s~~K~~g 210 (359)
++.+++++++... ..|++ .|..++.+++++|.+|++++|.||+|..-+.. |.... ++ ...+|+++++ |.++
T Consensus 206 -~~vaaFivEPIQG-EaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RT--Gk~la~d~env~PDivilg--KalS 279 (427)
T KOG1402|consen 206 -PNVAAFIVEPIQG-EAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLART--GKLLACDYENVRPDIVILG--KALS 279 (427)
T ss_pred -CCeeEEEeecccc-ccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccccc--CcEEEeehhhcCCCeEEEe--cccc
Confidence 7899999999988 45665 55599999999999999999999998543332 32211 11 1257777765 8775
Q ss_pred Ccee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC----CceEe
Q 018243 211 APVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK----GLRVD 283 (359)
Q Consensus 211 ~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~----g~~~~ 283 (359)
++.- +.++++++++-.++.. ..|+++..+++.++.+.++++-..+ ...++...+.+.|+..|.+++ ++-..
T Consensus 280 GG~~Pvsavl~~~~im~~~~pg--eHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~ 357 (427)
T KOG1402|consen 280 GGVYPVSAVLADDDIMLNIKPG--EHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKE 357 (427)
T ss_pred CCeeeeEEEEecHHHHhccCCC--ccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhe
Confidence 5322 5566777887765433 2566666677888888888876554 355667777888888888862 22111
Q ss_pred cCCccceEEEEEec--cchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEIT--EDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 284 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
. ...+.+..+.+. ...+.++.+++-.|.++|+..-|.....+|+.+...++++|+++.+++|.+.+.
T Consensus 358 V-RGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 358 V-RGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred e-eccceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 1 335555444443 223478889999999999999998889999999999999999999999988764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=155.00 Aligned_cols=315 Identities=16% Similarity=0.135 Sum_probs=226.0
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe---EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecc
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG---LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN 94 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~ 94 (359)
+.+++++.+...++.....-+...++.+-+...|...+. ++.++|+.+.+.++..++. |||.|++....-++...
T Consensus 30 ~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~le-Pgd~vLv~~~G~wg~ra- 107 (385)
T KOG2862|consen 30 GRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLE-PGDNVLVVSTGTWGQRA- 107 (385)
T ss_pred HHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcC-CCCeEEEEEechHHHHH-
Confidence 889999988766654443445567888888888877654 6778899999999999995 99998877666566544
Q ss_pred ccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEE
Q 018243 95 GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 95 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li 174 (359)
+...++.|+++..++.+......++++.+.+.+ .++++|++.+.-+ .||+.-+ -++.+-++|++|+.+++
T Consensus 108 ~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq-------h~p~~vfv~hgds-STgV~q~--~~~~~g~lc~k~~~lll 177 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ-------HKPKAVFVTHGDS-STGVLQD--LLAISGELCHKHEALLL 177 (385)
T ss_pred HHHHHhhCceeeEEecCcccCccHHHHHHHHHh-------cCCceEEEEecCc-cccccch--HHHHHHHHhhcCCeEEE
Confidence 456788999999997777777899999999998 6889999966544 8999755 36777789999999999
Q ss_pred EecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH--------------hhCCC--
Q 018243 175 IDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK--------------TLGGG-- 237 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~--------------~~~~~-- 237 (359)
||.+-+.|+.. ..+.++ ++|+.+.+..|.+|.|.| +.+..++...++++.-+. +++..
T Consensus 178 VD~VaSlggt~---F~mDew--gVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e 252 (385)
T KOG2862|consen 178 VDTVASLGGTE---FEMDEW--GVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGE 252 (385)
T ss_pred EechhhcCCcc---ceehhh--cccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCc
Confidence 99986665543 234444 899999999999999999 887778777777653332 12211
Q ss_pred -----cchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC--CccceEE-EEEeccchHHHHH
Q 018243 238 -----MRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AVETNIV-YFEITEDSKLYAA 305 (359)
Q Consensus 238 -----~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 305 (359)
...+-........+| +++++...+++++++++++..|+++ |++.... ....+.+ .+.++ .+.|..
T Consensus 253 ~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp--~gvDw~ 329 (385)
T KOG2862|consen 253 PRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVP--YGVDWK 329 (385)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecC--CCCCHH
Confidence 001222223333333 5666668888999999999999998 8875322 2222222 24444 357899
Q ss_pred HHHHHHHhc-Cceec----cCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEH-GVLVM----PESSTRVRIVVHHQ-ISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 306 ~~~~~l~~~-gi~~~----~~~~~~lRi~~~~~-~~~~~i~~~~~~l~~~~~~ 352 (359)
+++.++..+ ++.+. +-.+..+||.+..+ -+.+.++..++.|+..+.+
T Consensus 330 dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 330 DVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred HHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 999999555 55552 22466899975333 4567888888888877654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=169.79 Aligned_cols=334 Identities=13% Similarity=0.121 Sum_probs=211.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCcc-CCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDVL-MHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ +....+|.+.+++.+.......+ ..++...++.+.+.+.++. +...+++||++|+..+++.++.
T Consensus 53 ~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~ 132 (433)
T PRK00615 53 KTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARG 132 (433)
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH
Confidence 357899876 33455599998888765433222 2356677888888888864 3568999999999999999876
Q ss_pred hcCC-eEEe-cCCCcceeec-cccccccCCcc------c----------eeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 TRGS-EVIL-GDNSHIHIYE-NGGISTIGGVH------P----------RTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~~g~-~vl~-~~~~~~~~~~-~~~~~~~~g~~------~----------~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
..|. +|+. ...+|+..-. .++ ....+.. . ..++. -|.+.+++.+++.. .+
T Consensus 133 ~tgr~~ii~~~~~yHG~td~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~-----~~ 201 (433)
T PRK00615 133 ITGRSIIIKFLGCYHGHADTLLQG-ISFSETSLDTLTHLVDTDLAHPLTLSLPY-----NDFQIFQTVMNSLG-----HR 201 (433)
T ss_pred hhCCCEEEEEcCccCCCCcccCcc-cccCCCCcCcCCCCCCCCCCCCCeEeCCC-----CCHHHHHHHHHhcC-----Cc
Confidence 4554 4554 4445543300 011 1111100 0 01111 17888998886421 46
Q ss_pred eeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e
Q 018243 137 TRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g 214 (359)
+.+|++++..++ .|.. .+.+++++|+++|++||+++|+||+|. |...........+...+|++ +++|.+|+.. +
T Consensus 202 ~aavI~Epv~~~-~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~--~~gK~lggG~p~ 277 (433)
T PRK00615 202 VAGVIFEPICAN-MGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDIT--VYGKILGGGLPA 277 (433)
T ss_pred eEEEEECCCCCC-CCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeE--EEcccccCCcce
Confidence 889999998885 4554 456999999999999999999999984 33211111111122356765 4689987432 4
Q ss_pred eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCccc
Q 018243 215 SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVET 289 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~ 289 (359)
|++++++++++.+..... ..++++..++..+++++..++...+ ..+++..++.++|++.|++. .++.+.... .+
T Consensus 278 ~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G 356 (433)
T PRK00615 278 AAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YG 356 (433)
T ss_pred eeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-ec
Confidence 778889999888643211 2345666677888888888865432 34556666677775555542 144332222 45
Q ss_pred eEEEEEeccch-----------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITEDS-----------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 290 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++.+.+..+. ......+...|.++||.+.+...... .++..++++|+++++++++++++++.
T Consensus 357 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 357 SMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS--FLSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred eEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc--ceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 55555554211 11245788889899999876543222 34457899999999999999998863
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=171.88 Aligned_cols=309 Identities=11% Similarity=0.101 Sum_probs=202.8
Q ss_pred CCChHHHHHHHHHcCCCC------------CCccCCChHHHHHHHHHHHHhCCC--C-e-EEcCCchHHHHHHHHHhhhh
Q 018243 13 VTKPTEAMRAAMASAEVD------------DDVLMHDPTAFRLETEMAKVMGKE--A-G-LFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 13 ~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~la~~~~~~--~-~-~~~~~gt~a~~~~l~~~~~~ 76 (359)
++..++.+++++.+...+ +..........++++.++++++.+ . . ++.++|+.++.+++..++.
T Consensus 11 P~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~- 89 (360)
T PRK05355 11 PAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG- 89 (360)
T ss_pred CCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC-
Confidence 334458999998875311 111111245688899999999963 2 3 4457788899999999995
Q ss_pred cCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHH-HhcCCCCCccCCceeEEEEeccccCCCceec
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEA-AIRDPKGEIVYPTTRLICLENTHANCGGRCL 154 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~-~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~ 154 (359)
+|+++++.....++... ..+++..|.. ..+..+. .+..+..++++ .++ +++++|.+.| ..|.||+..
T Consensus 90 ~g~~~l~i~~G~fg~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~--------~~~~~V~~th-~eTstGv~~ 158 (360)
T PRK05355 90 GGKKADYVDTGSWSKKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS--------DDAAYVHYTS-NETIDGTEF 158 (360)
T ss_pred CCCeEEEEECCHHHHHH-HHHHHHhCCc-eEEecccccCCCCCCChhhccCC--------CCCCEEEEcc-CCCcceEec
Confidence 77776654444344332 2557777854 5554433 45555555555 666 5678898844 556999997
Q ss_pred ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH-HH-
Q 018243 155 SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR-LR- 231 (359)
Q Consensus 155 ~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~-~~- 231 (359)
+ ++.+| +|+++++|.++++|... ..+.. .|++++|.+|++| |.| |+++.+++..+++.. ..
T Consensus 159 ~--~i~~i------~g~l~vVDavss~g~~~---idv~~----~d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~~~~~~ 222 (360)
T PRK05355 159 H--ELPDT------GDVPLVADMSSDILSRP---IDVSK----FGLIYAGAQKNIG-PAGLTIVIVREDLLGRALPSIPS 222 (360)
T ss_pred C--ccccc------CCCcEEEEcCccccCcc---CCHHH----ccEEEEecccccc-CCceEEEEECHHHHhhcccCCCh
Confidence 4 25555 89999999998776553 33333 3588899999998 777 999999888877543 11
Q ss_pred ---------HhhCCCcchhHHHHHHHHHHH----HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecC-Cccc-eEEEEE
Q 018243 232 ---------KTLGGGMRQVGVLCAAALVAL----QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVET-NIVYFE 295 (359)
Q Consensus 232 ---------~~~~~~~~~~~~~~~~~~~~l----~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~-~~~~~~ 295 (359)
.....++. +.....+...++ +. .++.+.++..++++++++.|++++.+....+ ...+ ..+.|.
T Consensus 223 ~~~~~~~~~~~~~~~Tp-~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~ 301 (360)
T PRK05355 223 MLDYKTHADNDSMYNTP-PTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFT 301 (360)
T ss_pred HHHHHHHHhcCCccCCC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEE
Confidence 00111121 111122222233 33 4666777888999999999999943232222 1234 446677
Q ss_pred eccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 296 ITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.. .+..++.+.+.++|+.+.++. .+.+|+|+...++.+|++.+++.|++++++
T Consensus 302 ~~~~--~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 302 LADE--ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred cCCh--HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 7652 344677788888999985553 367999999999999999999999987654
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=186.69 Aligned_cols=343 Identities=13% Similarity=0.139 Sum_probs=217.6
Q ss_pred cccccccCCCC--CChHHHHHHHHHcCCCCCC--ccCCChHHHHHHHHHHHHh--CCCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDTV--TKPTEAMRAAMASAEVDDD--VLMHDPTAFRLETEMAKVM--GKEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~~--~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~la~~~--~~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.+++||.++.. ...+|++.+++.+...... .....+...++.+.+++++ +.+.+++++||++|+..+++.+..-
T Consensus 585 ~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~ 664 (972)
T PRK06149 585 RSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAA 664 (972)
T ss_pred CEEEECCCCccccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHh
Confidence 46789988743 3345899988877543211 1113466788999999988 3566799999999999999977643
Q ss_pred cCC-eEE-ecCCCcceeeccccc-cc---cCC---c---cceeeecCCC--CCC---C-----HHHHHHHhcCCCCCccC
Q 018243 77 RGS-EVI-LGDNSHIHIYENGGI-ST---IGG---V---HPRTVKNNQD--GTM---D-----IDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 77 ~g~-~vl-~~~~~~~~~~~~~~~-~~---~~g---~---~~~~v~~~~~--~~~---~-----~~~l~~~l~~~~~~~~~ 134 (359)
.|. +|+ +...+|+.+.....+ .. ..+ . .+..++.+.. +.+ + .+++++.++.... ..
T Consensus 665 tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 742 (972)
T PRK06149 665 SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDA--SG 742 (972)
T ss_pred cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhh--cC
Confidence 332 344 555566544220000 00 000 0 0112211111 111 1 2444444432111 11
Q ss_pred CceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccc-ccchhhhcCchhHhhhcCccEEEEeccccCCCce
Q 018243 135 PTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGAR-IFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV 213 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~-~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~ 213 (359)
.++.+|++++..++.+....|.++++++.++|++||+++|+||++ ++|..+........+.-.+|++ +++|.+|.+.
T Consensus 743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~G~ 820 (972)
T PRK06149 743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGNGH 820 (972)
T ss_pred CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccCCe
Confidence 578999999999876666778899999999999999999999998 3443321111112222356766 5678886432
Q ss_pred e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecCCc
Q 018243 214 G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVDAV 287 (359)
Q Consensus 214 g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~ 287 (359)
. |++++++++.+.+... ..+.+++..+++.++++...++...+ +..++..++.++|++.|+++ |.+... ..
T Consensus 821 Pl~av~~~~~i~~~~~~~-~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v--rG 897 (972)
T PRK06149 821 PLGAVITRREIAEALEAE-GYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAV--HG 897 (972)
T ss_pred eeEEEEEcHHHHhhhccC-CcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--ee
Confidence 2 6677888888876531 12334456678888888888876544 34556666677787777664 222222 34
Q ss_pred cceEEEEEecc------chHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITE------DSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 288 ~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.|.++.+.+.. +.......+.+.|.++||.+.+.+. +.+||.++..++++++++++++|++++++
T Consensus 898 ~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 898 MGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred cceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 56666666632 1112356788999999999977654 68999998899999999999999999865
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=168.69 Aligned_cols=339 Identities=17% Similarity=0.147 Sum_probs=213.1
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCC---Ccc--CCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDD---DVL--MHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+..... ..+ ..++...++.+.+++.+.. +...+++||++|+..+++
T Consensus 51 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Alk 130 (466)
T PRK07036 51 RRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALR 130 (466)
T ss_pred CEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHH
Confidence 357898876 33455588988888755431 112 2356677888888887753 456889999999999999
Q ss_pred Hhhhh------c-CCeEEecC-CCcceeeccccccccCCc------------cceeeecCCC----CCCC--------HH
Q 018243 72 VHCET------R-GSEVILGD-NSHIHIYENGGISTIGGV------------HPRTVKNNQD----GTMD--------ID 119 (359)
Q Consensus 72 ~~~~~------~-g~~vl~~~-~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~----~~~~--------~~ 119 (359)
.+..- + ..+|+.-+ .+|..+.- + ....+. .+..++.+.. ...+ .+
T Consensus 131 lAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~--a-~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 207 (466)
T PRK07036 131 FVHYYFNVRGRPAKKHIITRGDAYHGSTYL--T-ASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVD 207 (466)
T ss_pred HHHHHHHhcCCCCccEEEEEcCccCCccHh--h-hcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHH
Confidence 87532 1 24566444 44444322 1 111110 1222222110 1111 23
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hH-hhh
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VR-RLV 195 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~-~~~ 195 (359)
.+++.+.+ .+..++.+|++++...+ .|. ..|.+++++++++|++||+++|+||++..... .|.. .. .+.
T Consensus 208 ~~~~~i~~----~~~~~iAavi~EPv~g~-gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGR--tG~~~~~~~~~g 280 (466)
T PRK07036 208 EFEDKILS----LGADNIAAFIAEPILGS-GGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR--LGHFFASEAVFG 280 (466)
T ss_pred HHHHHHHH----cCCCceEEEEEeCCcCC-CCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCc--CchhhhhhhhcC
Confidence 44555542 11157999999998875 455 56779999999999999999999999743212 1211 11 122
Q ss_pred cCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHH---H--HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHH
Q 018243 196 QAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRL---R--KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKK 266 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 266 (359)
..+|++ +++|.+++ |.++ +++++++.+.+... . ...+.++..+++.++++...++...+ +..++..++
T Consensus 281 v~PDiv--t~gK~l~gG~~Pi~a-v~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~ 357 (466)
T PRK07036 281 IQPDII--TFAKGLTSGYQPLGA-VIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREV 357 (466)
T ss_pred CCCCEE--EEccccccCccccEE-EEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356765 55688854 3444 66788888876421 1 12445666678888888888876543 356677777
Q ss_pred HHHHHHHHhcCCCceE-ecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCH
Q 018243 267 AKLLAEGLNQLKGLRV-DVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISA 336 (359)
Q Consensus 267 ~~~l~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~ 336 (359)
.++|++.|+++....+ ..-...+.++.+.+..+. ......+.+.+.++||.+.+.+ ..+|++++..+++
T Consensus 358 g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~ 436 (466)
T PRK07036 358 GPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITR 436 (466)
T ss_pred HHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCH
Confidence 7888888766422111 111235666666664211 1124578888899999997755 5789998888999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018243 337 NDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~~~~ 355 (359)
+|+++++++++++++++.+
T Consensus 437 ~~id~~~~~l~~al~~~~~ 455 (466)
T PRK07036 437 AQIDEIVAILRAAIEETAD 455 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987743
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=172.27 Aligned_cols=228 Identities=18% Similarity=0.215 Sum_probs=154.7
Q ss_pred CccCCChHHHHHHHHHHHHhCCCCeEE-cCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKEAGLF-VPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~~~-~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+.+.+.....++++.+++++|.+..++ ++++++++..++.+++ ++||+|++++++|.+.+. + +.+.|++++.++.
T Consensus 53 ~l~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~-~--~~~~g~~~~~v~~ 128 (294)
T cd00615 53 DLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVIN-G--LVLSGAVPVYLKP 128 (294)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHH-H--HHHCCCEEEEecC
Confidence 344456678999999999999988876 5555678888888877 599999999999999876 3 5677888888854
Q ss_pred CCC------CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchh
Q 018243 111 NQD------GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184 (359)
Q Consensus 111 ~~~------~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 184 (359)
+.+ +.+|++++++.+++. +++++|++.++ |++|.+++ +++|.++|+++|+++|+|++|+.+..
T Consensus 129 ~~~~~~~~~~~i~~~~l~~~l~~~------~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~ 197 (294)
T cd00615 129 ERNPYYGIAGGIPPETFKKALIEH------PDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFR 197 (294)
T ss_pred ccCcccCcCCCCCHHHHHHHHHhC------CCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhc
Confidence 322 468999999999742 46888888654 48999987 89999999999999999999754321
Q ss_pred hhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHH--HHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHH
Q 018243 185 VALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEF--IKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLV 258 (359)
Q Consensus 185 ~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~ 258 (359)
.....+......++|+++.|+||+++++.+ |++..+.+. .+++........ +++++....++...+++ ..-++
T Consensus 198 ~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~-ttsps~~~~asl~~a~~~~~~~g~~ 276 (294)
T cd00615 198 FHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQ-STSPSYLILASLDVARAMMALEGKE 276 (294)
T ss_pred cCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHC-CCCcHHHHHHHHHHHHHHHHHHhHH
Confidence 111111122224789999999999987644 665554332 223322222222 22233333344333432 11223
Q ss_pred HhhhHHHHHHHHHHHHh
Q 018243 259 MLDGDHKKAKLLAEGLN 275 (359)
Q Consensus 259 ~~~~~~~~~~~l~~~l~ 275 (359)
..++..++.+.+++.|.
T Consensus 277 ~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 277 LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66677777888887765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=150.02 Aligned_cols=319 Identities=18% Similarity=0.226 Sum_probs=225.9
Q ss_pred HHHHHHHHcCCCCCCc---c--C-----CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 18 EAMRAAMASAEVDDDV---L--M-----HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~---~--~-----~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
++.++++.+.-.+.+. . + ..|.+.++-+.+++++|.+..-++.++.++-++++.+++ ++||.|+++..+
T Consensus 31 ~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~~a 109 (382)
T COG1103 31 EEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALC-KEGDWVVVDSLA 109 (382)
T ss_pred HHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhc-cCCCEEEEcCcc
Confidence 7888888875333221 1 1 145667777789999999988888888999999999999 599999999999
Q ss_pred cceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 88 HIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 88 ~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
|++.+- + +.+.|.++..+|.. +++.++++...+.|++..+..+ ..+.+.++.++..+ .|.+.+ -.++.++
T Consensus 110 HYttyv-A--AEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g-~~~~lallTh~Dg~-YGNl~D---akkva~i 181 (382)
T COG1103 110 HYTTYV-A--AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGG-DPPALALLTHVDGE-YGNLAD---AKKVAKI 181 (382)
T ss_pred hHHHHH-H--HHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccC-CCceEEEEeccCCC-cCCchh---hHHHHHH
Confidence 999986 4 88899999999754 3467888888888876444332 34677777676663 466554 7999999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH-H--------hhC
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR-K--------TLG 235 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~-~--------~~~ 235 (359)
|+++|++++..+||..|-++ .+..++ ++|+++.|.||.+..... |++..+.++.+...+.. . ..|
T Consensus 182 c~e~gvPlllN~AYt~Grmp---vs~ke~--g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellG 256 (382)
T COG1103 182 CREYGVPLLLNCAYTVGRMP---VSGKEI--GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLG 256 (382)
T ss_pred HHHcCCceEeecceeecccc---cccccc--CCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeec
Confidence 99999999999998776554 333444 899999999999965333 77778888877754332 1 134
Q ss_pred CCcchhHHHHHHHHHHHHHhHHH--HhhhHHHHHHHHHHHHhcCCCceEec-CCccceEEEEEeccchH------HHHHH
Q 018243 236 GGMRQVGVLCAAALVALQENVLV--MLDGDHKKAKLLAEGLNQLKGLRVDV-DAVETNIVYFEITEDSK------LYAAC 306 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~~------~~~~~ 306 (359)
.+....++. ...+++....+. +.+.-.++++++.+.|+++.|+.-.. .|.....+.|..+.-.. ....-
T Consensus 257 CT~rGapiv--TlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyF 334 (382)
T COG1103 257 CTVRGAPIV--TLMASFPHVVERVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYF 334 (382)
T ss_pred ccccCchHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCcee
Confidence 443333322 222333332221 33445578899999999985575422 23344455555543111 12335
Q ss_pred HHHHHHhcCcee-ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV-MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l~~~gi~~-~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++|.++||.- .|+-..++.+++. +++.|+++..+++++++++++
T Consensus 335 lY~ELK~RgI~GI~~G~Tk~~K~svy-Gl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 335 LYEELKKRGIHGIQPGQTKYFKLSVY-GLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred eHHHHHhcCccccccCceeEEEEEee-cCCHHHHHHHHHHHHHHHHhc
Confidence 788999999974 6777888999986 899999999999999999875
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=151.54 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=191.5
Q ss_pred EEcCCchHHHHHHHHHhhhhcC-CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 57 LFVPSGTMGNLISVLVHCETRG-SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 57 ~~~~~gt~a~~~~l~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
+++.-|+...+-++...+.-|| ++|+.-.|+ ++.|. .-+...+++++.++.+.++.+|.+.+.+.++.. .
T Consensus 89 ic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPt-ysMY~--v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~d------s 159 (375)
T KOG0633|consen 89 ICVGVGSDELIDLIIRCVCDPGKEKILDCPPT-YSMYV--VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELD------S 159 (375)
T ss_pred eEEecCcHHHHHHHHhheecCCccceeecCCc-ceeEE--EEeecCCceEEEecCCCCccccHHHHHHHHhcc------c
Confidence 7777777666555554444588 667777777 67776 337888999999999999999999999999852 5
Q ss_pred ceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-hcCccEEEE-eccccCCCce
Q 018243 136 TTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-VQAADSASV-CLSKGLGAPV 213 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~d~~~~-s~~K~~g~~~ 213 (359)
.++++++ ++++||||.....+++.+|.+.-. +.++++||||.-+.- .+ +...+ ....+++++ ++||.||. .
T Consensus 160 ~iK~~F~-tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg--~~-S~~~lV~kYpNLivlqTlSKsfGL-A 232 (375)
T KOG0633|consen 160 KIKCIFL-TSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSG--VE-SRMKLVKKYPNLIVLQTLSKSFGL-A 232 (375)
T ss_pred cceEEEE-cCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeecc--cc-ccchHhHhCCceeehhhhhhhcCc-c
Confidence 8999999 556669999999888888877543 789999999743221 12 22333 346667777 99999986 3
Q ss_pred e---eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC
Q 018243 214 G---SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA 286 (359)
Q Consensus 214 g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 286 (359)
| |+-..+..+.+.+.+.+..+.... ....+++.++. +..+..++...+.+.+|...|.++|++.-...+
T Consensus 233 GiRvG~~~~~~~ia~iln~~KaPYNiS~----~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg 308 (375)
T KOG0633|consen 233 GIRVGYGAFPLSIAEILNRAKAPYNISV----AGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGG 308 (375)
T ss_pred eeEeecccccHHHHHHHHhccCCccccc----hhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc
Confidence 3 777788889888877766554433 22223333332 223336777778888999999999887644456
Q ss_pred ccceEEEEEeccch-HHHHHHHHHHHHhcCceec-----cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDS-KLYAACLLKKLEEHGVLVM-----PESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~-----~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..++|+.+.+.+.+ +.......+.+.+.|+.+. ++..+++||+. -++|+-..+++.|++.
T Consensus 309 ~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitv---Gt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 309 SDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITV---GTPEENTVLMKCLKQF 374 (375)
T ss_pred ccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEc---CCcccchHHHHHHHhh
Confidence 78999999987543 2333344444488999983 34567899998 4677778888888764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=170.06 Aligned_cols=310 Identities=17% Similarity=0.184 Sum_probs=197.2
Q ss_pred hHHHHHHHHHcCCCCCC--ccC-----CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 16 PTEAMRAAMASAEVDDD--VLM-----HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~~--~~~-----~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
.++++.+++.+...... .|. .++....+++.+++++|.+.+++++||+.|+..++.. + .+|++|++++..|
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~-l-~~GdeVIvs~~e~ 170 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNT-L-AKGKEVIVSRGEL 170 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-h-CCcCEEEECCChh
Confidence 34777777765433211 111 2345689999999999999999999999998888844 4 4999999998775
Q ss_pred ce---eeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC--ce--ecChhhHHH
Q 018243 89 IH---IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG--GR--CLSVEYTDS 161 (359)
Q Consensus 89 ~~---~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt--G~--~~~~~~l~~ 161 (359)
.. .+......+..|++++.++.+ ...+++++++.++ ++|++|+++++.| ++ |. ..| +++
T Consensus 171 v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~--------~~T~lv~~~h~sN-~~~~G~~~~~d---l~~ 236 (454)
T TIGR00474 171 VEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAIT--------ENTALLLKVHTSN-YRIVGFTEEVS---IAE 236 (454)
T ss_pred hhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcC--------cCCEEEEEEccCc-ccccCCCCCCC---HHH
Confidence 32 111001245678888888643 2348899999998 7899999988765 53 53 444 899
Q ss_pred HHHHHHHcCcEEEEecccccchhhhc------Cc--hhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHH-
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVAL------GV--PVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRK- 232 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~------~~--~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~- 232 (359)
|+++|++||+++++|.+ .|..... .. .......++|++++|.+|++|+|.+|+++++++++++++...-
T Consensus 237 I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~~l~~~~l~ 314 (454)
T TIGR00474 237 LVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIERLKKNPLT 314 (454)
T ss_pred HHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHHhhhhchhH
Confidence 99999999999999975 3332111 11 1123335899999999999998888999999888876432110
Q ss_pred -hhC-CCcch-----------hHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcC--CCce--EecCC---------
Q 018243 233 -TLG-GGMRQ-----------VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQL--KGLR--VDVDA--------- 286 (359)
Q Consensus 233 -~~~-~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~--~g~~--~~~~~--------- 286 (359)
... .-... .+..+......++. +..+.++..+++..+.+.|++. +++. +....
T Consensus 315 r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~-l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p 393 (454)
T TIGR00474 315 RALRVDKLTLAALEATLRLYLDPEKALEKIPTLRM-LTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLP 393 (454)
T ss_pred HHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHH-hccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCc
Confidence 000 00000 00001111111121 2225557777888999999875 4553 32221
Q ss_pred -ccceEEEEEeccchHHHHHHHHHHHHhcCceecc-CCCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 287 -VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP-ESSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
..-+...+.+.. .+.++.++.+.|++....+.. -..+.+.+-+. .+.++|++.+++.|
T Consensus 394 ~~~l~~~~v~~~~-~~~~~~~l~~~lr~~~~~ii~r~~~~~~~ld~r-~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 394 DERLPSYAVTLTP-DGLSAEKLEARLRELPPPIIGRIEDDRFLLDLR-TLLEDEEELLIEAL 453 (454)
T ss_pred CCCCCeEEEEEec-CCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeC-cCCHHHHHHHHHHh
Confidence 112234444443 235788999999887744422 33455666554 57788999888876
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=168.79 Aligned_cols=318 Identities=19% Similarity=0.231 Sum_probs=236.3
Q ss_pred hHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCccee
Q 018243 16 PTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHI 91 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~ 91 (359)
..+.+.+++.+.... ....+....+.++|+..|+++|.+++++++-|-..+.+.+..++. ++.-|+-.+..|.+.
T Consensus 156 ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~-~gsLIiSDelNHaSi 234 (519)
T KOG1357|consen 156 CAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLG-KGSLIISDELNHASL 234 (519)
T ss_pred CChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeec-CCcceeeccccchhe
Confidence 347777777764222 223455677899999999999999999999998888888888885 999999999999998
Q ss_pred eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCC----CccCC-ceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 92 YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKG----EIVYP-TTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 92 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~----~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
.. + +++.|+.++.+.++ |..+|++.|++... ..+.+ +.-+|+++...+ .-|.+.. +.++..++
T Consensus 235 ~~-G--aRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiys-mEg~iv~---Lp~vvalk 302 (519)
T KOG1357|consen 235 IT-G--ARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYS-MEGTIVD---LPEVVALK 302 (519)
T ss_pred ec-c--ccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeecccee-ccCeecc---cHHHHHhh
Confidence 76 6 99999999999988 88899988887411 12212 233566666665 4577665 89999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG 242 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (359)
++|..+++.||||+.|+.+..|....++. .++|++..+++|.||. .||++.+++++++.++......-...+.++
T Consensus 303 kkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga-~GGyiagsk~lid~lrt~s~~~~yat~~sp 381 (519)
T KOG1357|consen 303 KKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-AGGYIAGSKELIDYLRTPSPSALYATSLSP 381 (519)
T ss_pred ccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc-ccceecCcHHHHhhhccCCCceeecccCCh
Confidence 99999999999999999877776655553 3566777799999885 889999999999997755544444444566
Q ss_pred HHHHHHHHHHH--------HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 243 VLCAAALVALQ--------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 243 ~~~~~~~~~l~--------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
..+.-.+.+++ +..++..++..++..+++..|+.. |+.+... ..++.+.+.+-.+ .....+...|.++
T Consensus 382 pvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~-~dSpVvplll~~~--~k~~~f~r~~l~~ 457 (519)
T KOG1357|consen 382 PVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGN-NDSPVVPLLLYGP--AKIVAFSREMLER 457 (519)
T ss_pred HHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecC-CCCCcceeeecCc--ccccHHHHHHHhc
Confidence 66665565553 223457778889999999999998 8887543 4565554443321 1445677788777
Q ss_pred CceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 315 gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+|.++-.+ ....|+|.+..++.|+++++++.+.+.-+
T Consensus 458 nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 458 NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 77763322 23579999889999999999999987653
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=182.31 Aligned_cols=335 Identities=16% Similarity=0.141 Sum_probs=209.9
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCC--ccCCC-------hHHHHHHHHHHHHhCCCCeEEcCC-chHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDD--VLMHD-------PTAFRLETEMAKVMGKEAGLFVPS-GTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~l~~~la~~~~~~~~~~~~~-gt~a~~~~l~~~ 73 (359)
.+|-+.+ .+....|.+...+........ .|.+. +...++++.+++++|.+.+.++.+ |+++...++.++
T Consensus 500 ~~i~lGs-ct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~ 578 (954)
T PRK05367 500 SMIPLGS-CTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAI 578 (954)
T ss_pred ceeeCCc-CCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHH
Confidence 3455666 333334555555554332222 23321 334778888999999998766665 445554555444
Q ss_pred h---hhcCC----eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 74 C---ETRGS----EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 74 ~---~~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
. .++|+ +|++++..|++... .+...|++++.++.+.++.+|+++|++.++++. .++.+|++.++.
T Consensus 579 r~~~~~~G~~~r~~vlis~~aH~snp~---sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~-----~~la~V~it~ps 650 (954)
T PRK05367 579 RAYHESRGEGHRDVCLIPSSAHGTNPA---SAVMAGMKVVVVACDENGNIDLDDLRAKAEEHA-----DNLAAIMITYPS 650 (954)
T ss_pred HHHhhccCCCCCCEEEEEchhhhhhHH---HHHHCCCEEEEECCCCCCCcCHHHHHHHHhccC-----CCeEEEEEEcCC
Confidence 3 13444 59999999988765 267889999999888889999999999997410 357777774433
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee------eEEecC
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG------SVIVGS 220 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g------g~~~~~ 220 (359)
. - |.+. +++++|+++|+++|+++++|+++..+..... .... .++|++++++||||+.|.| |++..+
T Consensus 651 t-~-G~~e--~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~--~pg~--~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr 722 (954)
T PRK05367 651 T-H-GVFE--ETIREICEIVHEHGGQVYLDGANMNAQVGLA--RPGD--IGADVSHLNLHKTFCIPHGGGGPGVGPIGVK 722 (954)
T ss_pred C-C-eeec--CCHHHHHHHHHHcCCEEEEECcChhhccCCC--Chhh--cCCCEEEecCcccCCCCcCCCCCceEEEeec
Confidence 3 2 4442 3499999999999999999999754322211 1222 3899999999999976643 577777
Q ss_pred HHHHHHHHHHHH---h---hCCCcchhHH----HHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC
Q 018243 221 KEFIKKARRLRK---T---LGGGMRQVGV----LCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA 286 (359)
Q Consensus 221 ~~~~~~~~~~~~---~---~~~~~~~~~~----~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 286 (359)
+.+...+..... . ..+....++. .+..++..+ .+.+.+..++...+++++.+.|++...+.+..+.
T Consensus 723 ~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~ 802 (954)
T PRK05367 723 AHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGAN 802 (954)
T ss_pred ccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCC
Confidence 555444321110 0 0011111111 111112222 2334445556668999999999875232221111
Q ss_pred -ccceEEEEEe---ccchHHHHHHHHHHHHhcCceeccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 287 -VETNIVYFEI---TEDSKLYAACLLKKLEEHGVLVMPE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 287 -~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
....-+.+.+ +...+.+..++.++|.++|+..... ..+.++|+++...+++|+|++++++..+..++.+
T Consensus 803 ~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 803 GRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 0111133333 2211346789999999999987321 2678999999999999999999999999888764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=180.04 Aligned_cols=299 Identities=15% Similarity=0.166 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHHhCCCCeEEcC-CchHHHHHHHHHhhh-------hcCCeEEecCCCcceeeccccccccCCccceeee
Q 018243 38 PTAFRLETEMAKVMGKEAGLFVP-SGTMGNLISVLVHCE-------TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK 109 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~~~~~-~gt~a~~~~l~~~~~-------~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 109 (359)
+...++++.+++++|.+.+-+.. +|+++..++++++.. ...++|+++...|.+... .+...|++++.++
T Consensus 543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa---sa~~~GieVv~Vp 619 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA---SAQMAGMRVVIVE 619 (954)
T ss_pred HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH---HHHHCCCEEEEec
Confidence 44578899999999999886655 677777677777653 124578999999977653 3677899999999
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
.+++|.+|+++|++.++++. +++++|++.++.+ .|.+ .+++++|+++++++|+++++|.++..+... -.
T Consensus 620 ~D~~G~iDle~L~a~I~~~~-----~~laaVmiT~Pnt--~Gv~--e~~V~eI~~iah~~Galv~vDgA~~~a~~~--l~ 688 (954)
T PRK12566 620 CDPDGNVDLDDLKAKAAAAG-----DRLSCLMITYPST--HGVY--EEGIREICEVVHQHGGQVYMDGANLNAQVG--LA 688 (954)
T ss_pred cCCCCCcCHHHHHHHhhccC-----CCEEEEEEEecCc--Ccee--cchHHHHHHHHHHcCCEEEEEeeChhhccC--CC
Confidence 88899999999999997421 5677777744433 3544 346999999999999999999997432221 11
Q ss_pred hhHhhhcCccEEEEeccccCCCcee------eEEecCHHHHHHHHHHH--HhhC-----CCcch----hHHHHHHHHHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPVG------SVIVGSKEFIKKARRLR--KTLG-----GGMRQ----VGVLCAAALVAL 252 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~g------g~~~~~~~~~~~~~~~~--~~~~-----~~~~~----~~~~~~~~~~~l 252 (359)
...++ ++|++.+++||||++|.| |.+...+++...++... ..-+ .+.+. +...+..++..+
T Consensus 689 ~Pg~~--GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi 766 (954)
T PRK12566 689 RPADI--GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYI 766 (954)
T ss_pred Chhhc--CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHH
Confidence 12333 899999999999987754 23333444443433221 0000 11111 111112222222
Q ss_pred HHh---HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce---EEEEE---eccchHHHHHHHHHHHHhcCcee----c
Q 018243 253 QEN---VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN---IVYFE---ITEDSKLYAACLLKKLEEHGVLV----M 319 (359)
Q Consensus 253 ~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~l~~~gi~~----~ 319 (359)
... +.+.......+++++++.|.+..++.+ .+..+. -+.+. ++...+.+..++.++|.++||.. .
T Consensus 767 ~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~--~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~f 844 (954)
T PRK12566 767 AMMGPQLADASEVAILSANYLANQLGGAFPVLY--RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSF 844 (954)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCc--CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEee
Confidence 111 222333345688999999987433333 221122 12222 22212356788999999999976 2
Q ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 320 PESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 320 ~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
| ..+++|++++...+++|+|+++++|..+.+++.+
T Consensus 845 P-v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 845 P-VPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred c-cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 3678999999999999999999999999988653
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-20 Score=165.74 Aligned_cols=339 Identities=17% Similarity=0.170 Sum_probs=208.6
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCC-CCc---cCCChHHHHHHHHHHHHhCCC----CeEEc-CCchHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVD-DDV---LMHDPTAFRLETEMAKVMGKE----AGLFV-PSGTMGNLIS 69 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~-~~~---~~~~~~~~~l~~~la~~~~~~----~~~~~-~~gt~a~~~~ 69 (359)
.++|||.++ +....+|++.+++.+.... ... ...++...++.+.+++.++.. ..+++ +||++|+..+
T Consensus 58 ~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~A 137 (459)
T PRK06931 58 NQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAA 137 (459)
T ss_pred CEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHH
Confidence 367899887 3345559999999886542 111 123566678888888887532 23344 7999999999
Q ss_pred HHHhhhhcCC-eEEecC-CCcceeeccccccccCC------------ccceeeecCCCCC--C------CHHHH----HH
Q 018243 70 VLVHCETRGS-EVILGD-NSHIHIYENGGISTIGG------------VHPRTVKNNQDGT--M------DIDLI----EA 123 (359)
Q Consensus 70 l~~~~~~~g~-~vl~~~-~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~--~------~~~~l----~~ 123 (359)
++.+..-.|. +|+... .+|..+.. + ....+ ..+..++.+.... . +.+.+ ++
T Consensus 138 lklAr~~tgr~~Ii~~~~~yHG~t~~--a-ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (459)
T PRK06931 138 IKLAKTYTGRSNVISFSGGYHGMTHG--A-LAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFEN 214 (459)
T ss_pred HHHHHHhcCCCeEEEECCCcCCccHH--H-HhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 9988754443 465444 44444322 1 11111 0122222221110 0 22333 33
Q ss_pred HhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEE
Q 018243 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSA 201 (359)
Q Consensus 124 ~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~ 201 (359)
.+++. .....++.+|++++...+.+-...+.+++++++++|++||+++|+||++..... .|.. ...+.-.+|++
T Consensus 215 ~~~~~--~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGR--tG~~~a~~~~gv~PDiv 290 (459)
T PRK06931 215 FIEDV--ESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFAR--TGKMFAFEHAGIEPDII 290 (459)
T ss_pred HHHhh--hcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCc--CchHHHhhhcCCCCCEE
Confidence 33210 001146899999999885433356779999999999999999999999753322 2321 11222356766
Q ss_pred EEeccccCC--CceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC-
Q 018243 202 SVCLSKGLG--APVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL- 277 (359)
Q Consensus 202 ~~s~~K~~g--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~- 277 (359)
++ +|.++ .|.++ ++.++++ +.+. ....++++..+++.++++...++...+ +..++..++.++|++.|+++
T Consensus 291 t~--gK~l~gG~Pi~a-v~~~~~~-~~~~--~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~ 364 (459)
T PRK06931 291 VM--SKAVGGGLPLAV-LGIKKEF-DAWQ--PGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQ 364 (459)
T ss_pred Ee--cccccCCcceee-eeeHHHH-hhcc--CCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 55 57774 34544 5555553 4432 123566777788888888888875543 35566666777777777654
Q ss_pred C--CceEecCCccceEEEEEeccch------------HHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHH
Q 018243 278 K--GLRVDVDAVETNIVYFEITEDS------------KLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHY 341 (359)
Q Consensus 278 ~--g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~ 341 (359)
. ++.... ...+.++.+.+..+. ......+.+.+.++|+.+.+.+ .+.+|+.++..++++++++
T Consensus 365 ~~~~~i~~v-rG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~ 443 (459)
T PRK06931 365 KRYPCIGNV-RGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEE 443 (459)
T ss_pred HhCCCeEeE-ecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHH
Confidence 1 221111 345666666663210 1124567788889999997654 4789999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 018243 342 TLSCFQKIYAGVCE 355 (359)
Q Consensus 342 ~~~~l~~~~~~~~~ 355 (359)
++++++++++++.+
T Consensus 444 ~~~~l~~~l~~~~~ 457 (459)
T PRK06931 444 FIDRFEQALLAAVK 457 (459)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987644
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-21 Score=165.90 Aligned_cols=302 Identities=11% Similarity=0.079 Sum_probs=196.1
Q ss_pred HHHHHHHHcCC-----CCCCccCCChHHHHHHHHHHHHhCCCC---eEEc-CCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 18 EAMRAAMASAE-----VDDDVLMHDPTAFRLETEMAKVMGKEA---GLFV-PSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 18 ~~~~~a~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~-~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
|++++++.... .++..........+.++.++++++.+. .+++ .|||.++..++..++. ++.+++....|
T Consensus 16 ~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~--~~~l~i~~G~~ 93 (361)
T TIGR01366 16 LEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE--KKSLHLSFGEF 93 (361)
T ss_pred HHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc--ccccEEecCHH
Confidence 88999988642 122222234566888999999999842 3554 5699999999998873 24455666666
Q ss_pred ceeecccccccc---CCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 89 IHIYENGGISTI---GGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 89 ~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
.+.+. ..+.+ .+ ++..++.+....++. .+. +++++|.++| .+|.||...|. ++|
T Consensus 94 ~~~~~--~~a~~~~~~~-~~~~~~~~~~~~~~~-----~~~--------~~~~lV~~~h-~et~tG~~~pi---~~I--- 150 (361)
T TIGR01366 94 SSKFA--KAVKLAPWLG-EPIIVTADPGSAPEP-----QAD--------PGVDVIAWAH-NETSTGVAVPV---RRP--- 150 (361)
T ss_pred HHHHH--HHHHhhhccC-CceEEecCCCCCCCC-----ccC--------CCCCEEEEcc-cCCccceeccc---ccc---
Confidence 55444 22332 33 555565443332222 233 6899999955 55589999984 444
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH-------h----
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK-------T---- 233 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~-------~---- 233 (359)
++++|+++++|.+++++... ..+. .+|++++|.+|++|+|.| ++++.+++..++++.... +
T Consensus 151 ~~~~g~~~iVDavqs~g~~~---idv~----~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~ 223 (361)
T TIGR01366 151 EGSDDALVVIDATSGAGGLP---VDIA----ETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLP 223 (361)
T ss_pred cccCCCeEEEEcCccccCCC---CCHH----HCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHH
Confidence 58899999999998776553 2222 279999999999998866 666778877766542110 0
Q ss_pred --h-----CCCcchhHHHHH-HHHHHH---H-H-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceE-EEEEec
Q 018243 234 --L-----GGGMRQVGVLCA-AALVAL---Q-E-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNI-VYFEIT 297 (359)
Q Consensus 234 --~-----~~~~~~~~~~~~-~~~~~l---~-~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~-~~~~~~ 297 (359)
. +.+...++.... +...++ . . ..+.+.++..++++++++.|++.+++++..... .++. ..+.++
T Consensus 224 ~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~ 303 (361)
T TIGR01366 224 TAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV 303 (361)
T ss_pred HHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC
Confidence 0 111222222211 112222 2 2 245456778888999999999985555432211 1222 224443
Q ss_pred cchHHHHHHHHHHHHhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKLEEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+++..++.+.|.++||.+.++ +...+|++++..++++|+++++++|+++++++
T Consensus 304 --~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 304 --DDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred --CccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 2468889999998899998654 24579999999999999999999999987753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=168.19 Aligned_cols=328 Identities=14% Similarity=0.142 Sum_probs=200.3
Q ss_pred cccccccCC----CCCChHHHHH--HHHHcCCCCCC----c--cCCChHHHHHHHHHHHHh---CCCCeEEcCCchHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMR--AAMASAEVDDD----V--LMHDPTAFRLETEMAKVM---GKEAGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~--~a~~~~~~~~~----~--~~~~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~ 67 (359)
.++|||.++ +....+|.+. +++.+...... . ....+...++-+.+++.. +.+...+++||++|++
T Consensus 38 ~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve 117 (431)
T TIGR03251 38 RRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVE 117 (431)
T ss_pred CChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHH
Confidence 357899887 3445558888 77766443211 1 122444556666666664 2345689999999999
Q ss_pred HHHHHhhhh-------c------CCeEEecCC-CcceeeccccccccCCcc-------ce----ee--e-----cCCCC-
Q 018243 68 ISVLVHCET-------R------GSEVILGDN-SHIHIYENGGISTIGGVH-------PR----TV--K-----NNQDG- 114 (359)
Q Consensus 68 ~~l~~~~~~-------~------g~~vl~~~~-~~~~~~~~~~~~~~~g~~-------~~----~v--~-----~~~~~- 114 (359)
.|++.+..- . +.+|+.... +|+.+.. + ....+.. +. .+ + .+...
T Consensus 118 ~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~--a-ls~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 118 NALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGY--T-LSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchh--h-hhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 999988631 1 246765554 4444332 1 2121210 00 01 1 00000
Q ss_pred C-------CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhh
Q 018243 115 T-------MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA 186 (359)
Q Consensus 115 ~-------~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~ 186 (359)
. -+++++++.+++.. .++.+|++++...+ +|. ..+.+++++|+++|++||+++|+||++... +.
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~-----~~iAavivEPv~g~-~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~--Gr 266 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERP-----HDIACFIAEPIQGE-GGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGV--GL 266 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCC-----CcEEEEEEeccccC-CCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcc--Cc
Confidence 0 02344555665321 57999999998885 455 467799999999999999999999998622 22
Q ss_pred cCch--hHhhhcCccEEEEeccccCCCceeeEEecCH--HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhh
Q 018243 187 LGVP--VRRLVQAADSASVCLSKGLGAPVGSVIVGSK--EFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLD 261 (359)
Q Consensus 187 ~~~~--~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 261 (359)
.|.. ...+.-.+|++++ +|.+ |.+|++.+++ ++...........+.++..++..++++..+++...+ ...+
T Consensus 267 tG~~~a~~~~gv~PDi~~~--gK~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~ 342 (431)
T TIGR03251 267 TGTAWAYQQLGVQPDIVAF--GKKT--QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVD 342 (431)
T ss_pred cchHHHHHhcCCCCCEEEe--cccC--ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 2322 1122236777754 5654 5667776653 222111001112345555567777777877765433 2345
Q ss_pred hHHHHHHHHHHHHhc----CCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHH
Q 018243 262 GDHKKAKLLAEGLNQ----LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 262 ~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~ 337 (359)
+..++.++|.+.|++ .+++.... ...+.++.+.++.. .....+.+.|.++||.+.+.+...+|++++..++++
T Consensus 343 ~~~~~g~~l~~~L~~l~~~~~~~i~~v-rg~G~~~~i~~~~~--~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~ 419 (431)
T TIGR03251 343 NARVQGAHLLARLHELAAEFPHLVSNP-RGRGLMCAFDLPST--ADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTRE 419 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceecc-cccceeEEEEeCCH--HHHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHH
Confidence 566666666666654 33233222 34567777777642 245678899999999998877788999999999999
Q ss_pred HHHHHHHHHHH
Q 018243 338 DVHYTLSCFQK 348 (359)
Q Consensus 338 ~i~~~~~~l~~ 348 (359)
|+++++++|++
T Consensus 420 eid~~l~~l~~ 430 (431)
T TIGR03251 420 EIDAAIDAIRR 430 (431)
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-20 Score=179.89 Aligned_cols=338 Identities=16% Similarity=0.152 Sum_probs=216.9
Q ss_pred cccccccCCCC--CChHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDTV--TKPTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~~--~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.+++||.++.. ...+|++.+++.+..... ......+...++.+.+++.+.. +.+.+++||++|+..+++.+..-
T Consensus 624 ~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~ 703 (1013)
T PRK06148 624 RAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH 703 (1013)
T ss_pred CEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 36789988743 344499999888755432 1112356778888888888754 45689999999999999998754
Q ss_pred cCC-eEEe-cCCCcceeeccccccccCCc------------cceeeecCC--CCCC---C-------HHHHHHHhcCCCC
Q 018243 77 RGS-EVIL-GDNSHIHIYENGGISTIGGV------------HPRTVKNNQ--DGTM---D-------IDLIEAAIRDPKG 130 (359)
Q Consensus 77 ~g~-~vl~-~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~--~~~~---~-------~~~l~~~l~~~~~ 130 (359)
.|. +|+. ...+|+.+.. + ....+. .+..++.+. .... + .+.+++.++....
T Consensus 704 tGr~~ii~~~~~YHG~t~~--a-~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 780 (1013)
T PRK06148 704 TGQRDAIVLDHAYHGTTTE--L-IDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAA 780 (1013)
T ss_pred cCCCeEEEEcCCccCCCcc--h-hhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhc
Confidence 443 4554 4445554432 1 111110 111111110 0011 1 1345555542111
Q ss_pred CccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---hhHhhhcCccEEEEeccc
Q 018243 131 EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---PVRRLVQAADSASVCLSK 207 (359)
Q Consensus 131 ~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d~~~~s~~K 207 (359)
...++.+|++++...+.+....|.+++++++++|++||+++|+||++...... |. ....+.-.+|+++ ++|
T Consensus 781 --~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRt--G~~~~a~e~~gv~PDivt--~gK 854 (1013)
T PRK06148 781 --KGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRV--GSHWWAFETQGVVPDIVT--MGK 854 (1013)
T ss_pred --cCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCC--CCcchhhhhcCCCcceee--ecc
Confidence 11469999999998865555677899999999999999999999998432222 21 1122223567654 468
Q ss_pred cCCC--ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCc
Q 018243 208 GLGA--PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGL 280 (359)
Q Consensus 208 ~~g~--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~ 280 (359)
.+|. |. |.+++++++.+.+..- ..+++++..+++.++++...++...+ +..++..++.++|++.|+++ |.+
T Consensus 855 ~lggG~Pl-gav~~~~ei~~~~~~g-~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i 932 (1013)
T PRK06148 855 PIGNGHPM-GAVVTTREIADSFDNG-MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDII 932 (1013)
T ss_pred cccCCcce-EEEEEcHHHHhhccCC-CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8754 44 4466788888776421 12456666778888888888876544 35566777778888887764 222
Q ss_pred eEecCCccceEEEEEeccc------hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITED------SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.- . ...+.++.+.+..+ .......+.+.|.++||.+.+.+ ...+|+.++..++++++++++++|++++++
T Consensus 933 ~~-V-rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148 933 GD-V-RGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred eE-E-eeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 11 1 23566666666421 11235678888999999997654 478999999999999999999999999987
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 1011 ~ 1011 (1013)
T PRK06148 1011 A 1011 (1013)
T ss_pred H
Confidence 5
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=169.44 Aligned_cols=311 Identities=16% Similarity=0.187 Sum_probs=192.5
Q ss_pred cccCCCCCChHHHHHHHHHcCCC-----CCCccCCC-------hHHHHHHHHHHHHhCCCC---eEEcCC-chHHHHHHH
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEV-----DDDVLMHD-------PTAFRLETEMAKVMGKEA---GLFVPS-GTMGNLISV 70 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~-------~~~~~l~~~la~~~~~~~---~~~~~~-gt~a~~~~l 70 (359)
+|..+.... ++.+++++.+... +...|..+ ....++++.++++++.+. .++++| ||+++..++
T Consensus 2 ~~~pGp~~~-p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~ 80 (355)
T cd00611 2 NFSAGPAAL-PEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVP 80 (355)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHH
Confidence 344433333 3778888766431 11122222 456888999999999732 466666 999999999
Q ss_pred HHhhh--hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCC-C-HHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVHCE--TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM-D-IDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~-~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..+.. ++++.|+.....|.. . .+++..|+++..++.+.++.+ + .+..+..++ +++++|.+.+ .
T Consensus 81 ~~l~~~~~~~~~i~~g~~~~~~--~--~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~lV~~~h-~ 147 (355)
T cd00611 81 LNLLGDKGTADYVVTGAWSAKA--A--KEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA--------PDAAYVHYCS-N 147 (355)
T ss_pred HhcCCCCCeEEEEECCHHHHHH--H--HHHHhcCCCcEEEecccccCCCCCCCHhhcCCC--------CCCCEEEEeC-C
Confidence 99873 244444442222211 1 245777888888876544333 3 222223344 6889998855 5
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
+|.||...+ ++++.||+++++|.++++|... ..+..+ |++..|.+|++| |.| |+++.++++.+
T Consensus 148 ~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~~---idv~~~----~~~~ss~~K~lG-P~G~g~l~~~~~~~~ 211 (355)
T cd00611 148 ETIHGVEFD--------EVPDTGGVPLVADMSSNILSRP---IDVSKF----GVIYAGAQKNLG-PAGVTVVIVRKDLLG 211 (355)
T ss_pred cccccEEcc--------eecccCCCeEEEEccccccCCC---CCHHHh----CEEEeecccccC-CCceEEEEECHHHHh
Confidence 558999743 3344599999999999886653 333333 344557999998 667 99999988887
Q ss_pred HHHHH-------HH--hhCCCcchhHH-HHHHHHHHH----HH-hHHHHhhhHHHHHHHHHHHHhcCCCce-EecC-Ccc
Q 018243 226 KARRL-------RK--TLGGGMRQVGV-LCAAALVAL----QE-NVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVD-AVE 288 (359)
Q Consensus 226 ~~~~~-------~~--~~~~~~~~~~~-~~~~~~~~l----~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~-~~~ 288 (359)
++... .. ........++. ...+...++ +. ..+.+.++..++++++++.|+++||+. .... ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~r 291 (355)
T cd00611 212 KARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRAR 291 (355)
T ss_pred hcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHc
Confidence 64421 10 00110111211 112222233 23 466577778899999999999998863 2111 123
Q ss_pred c-eEEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 289 T-NIVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 289 ~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+ ..+.|+++.. ....++.+.+.++|+.+.++. .+.+|++++.+++++|+++++++|+++
T Consensus 292 s~~vvsf~~~~~--~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 292 SRMNVPFRLGKE--ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred CceEEEEEcCCh--hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 3 3466776651 122555567778999854442 367999999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-20 Score=152.04 Aligned_cols=310 Identities=17% Similarity=0.180 Sum_probs=210.5
Q ss_pred HHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHH-hCCCC---------eEEcCCchHHHHHHHHHhhh-hcCCeEEec
Q 018243 18 EAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKV-MGKEA---------GLFVPSGTMGNLISVLVHCE-TRGSEVILG 84 (359)
Q Consensus 18 ~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~-~~~~~---------~~~~~~gt~a~~~~l~~~~~-~~g~~vl~~ 84 (359)
+.|.++-++.... ...|.+-.+...+.+.++++ ||.+. .+.+.|||.|+..+...+.. .+...|.++
T Consensus 47 ~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis 126 (396)
T COG1448 47 RAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWIS 126 (396)
T ss_pred HHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeC
Confidence 6666666654433 44677777888888888776 45442 27889999999988887654 345569999
Q ss_pred CCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+|+|.. +. .+....|.++..++.- ++..+|.+.+...|++. +...+|++..++|||||.-++.+++++|
T Consensus 127 ~PtW~N-H~--~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a------~~~~vvLLH~CcHNPTG~D~t~~qW~~l 197 (396)
T COG1448 127 DPTWPN-HK--AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA------PEGSVVLLHGCCHNPTGIDPTEEQWQEL 197 (396)
T ss_pred CCCcHh-HH--HHHHhcCCceeeeeccccccccccHHHHHHHHHhC------CCCCEEEEecCCCCCCCCCCCHHHHHHH
Confidence 999554 66 6788899999888543 34558999999999875 5566888989999999999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCch---hHhhh-cCccE-EEEeccccCCC---cee--eEEecCHHHHHHHH-HHH
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVP---VRRLV-QAADS-ASVCLSKGLGA---PVG--SVIVGSKEFIKKAR-RLR 231 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~-~~~d~-~~~s~~K~~g~---~~g--g~~~~~~~~~~~~~-~~~ 231 (359)
.++.++.|.+-++|-||-.+..+ .... ...+. ....+ +..|+||.||. ..| .++..+++...++. .+.
T Consensus 198 ~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk 276 (396)
T COG1448 198 ADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLK 276 (396)
T ss_pred HHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHH
Confidence 99999999999999886332221 1111 12222 23334 44599999976 345 34445666666554 233
Q ss_pred HhhCCCcchhHHHHHHHHHH------H----HHhHHHHhhhHHHHHHHHHHHHhcC-C--CceEecCCccceEEEEEecc
Q 018243 232 KTLGGGMRQVGVLCAAALVA------L----QENVLVMLDGDHKKAKLLAEGLNQL-K--GLRVDVDAVETNIVYFEITE 298 (359)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~------l----~~~~~~~~~~~~~~~~~l~~~l~~~-~--g~~~~~~~~~~~~~~~~~~~ 298 (359)
.....+++.++...+..... | +..+...++++.+++..|.+.|++. + .|.+.. ...|.|.+.-
T Consensus 277 ~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~-~Q~GMFsy~G--- 352 (396)
T COG1448 277 AIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFII-SQRGMFSYTG--- 352 (396)
T ss_pred HHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHh-hcCceeecCC---
Confidence 33333333333222222221 1 2334458888899999999999984 1 355432 2345444442
Q ss_pred chHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 299 DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 299 ~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.+.+++.....++||+++..| ||++. ++++..++.++++|.++
T Consensus 353 ---ls~~QV~rLree~~IY~v~sG----Ri~va-Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 353 ---LSPEQVDRLREEFGIYLVASG----RINVA-GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred ---CCHHHHHHHHHhccEEEecCC----eeeec-cCChhhHHHHHHHHHhh
Confidence 245555544489999998877 99988 89999999999999865
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=167.58 Aligned_cols=289 Identities=24% Similarity=0.284 Sum_probs=193.0
Q ss_pred CChHHHHHHHHHcCCC-CCCccCCChHHHHHHHH----HHHHhCCCC---eEEcCCchHHHHHHHHHhhhhc-------C
Q 018243 14 TKPTEAMRAAMASAEV-DDDVLMHDPTAFRLETE----MAKVMGKEA---GLFVPSGTMGNLISVLVHCETR-------G 78 (359)
Q Consensus 14 ~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~----la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~-------g 78 (359)
+.+++...+++..... +....+.+|....+|+. ++++++.+. +.++++||+|++.++.++..+. +
T Consensus 72 ~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~ 151 (460)
T COG0076 72 TRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES 151 (460)
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444555555554332 22223344566566655 556677742 4999999999999999875311 1
Q ss_pred C------eEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeE-EEEeccccCCC
Q 018243 79 S------EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRL-ICLENTHANCG 150 (359)
Q Consensus 79 ~------~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~-v~i~~~~~~pt 150 (359)
. .|+++..+|++..+ + +...|+....++... +..+|++++++++++ .+.. +++-+..++++
T Consensus 152 ~~~~~~P~ii~s~~aH~s~~K-a--a~~lG~~~~~v~~~~~~~~id~~~l~~~i~~--------~t~~g~vV~~aGtT~~ 220 (460)
T COG0076 152 GKPGGKPNIVCSETAHFSFEK-A--ARYLGLGLRRVPTVPTDYRIDVDALEEAIDE--------NTIGGVVVGTAGTTDT 220 (460)
T ss_pred cccCCCCeEEecCcchhHHHH-H--HHHhCCCceeEEeccCccccCHHHHHHHHHh--------hccCceEEEEecCCCC
Confidence 1 59999999999876 4 888899998887666 799999999999995 2222 23336777788
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-hh-hcCccEEEEeccccCCCcee-eEEec-CHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RL-VQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~-~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~ 226 (359)
|.+ |++++|.++|+++++++|||.|++....++...... .+ ...+|.+++++||++..|.| |+++. +++-..+
T Consensus 221 G~i---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~ 297 (460)
T COG0076 221 GSI---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRR 297 (460)
T ss_pred Ccc---CCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhh
Confidence 885 459999999999999999999964444433322222 12 25889999999999988877 65555 6644444
Q ss_pred HHHHHHhhCCC---------cchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 227 ARRLRKTLGGG---------MRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 227 ~~~~~~~~~~~---------~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
...+...+... .+.++...++.+..+ .++..+..++..+.++++.+.|++.+.+++..+| ..+.+.
T Consensus 298 ~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-~l~~V~ 376 (460)
T COG0076 298 ILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-ELPIVA 376 (460)
T ss_pred hhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-ccceEE
Confidence 33333322221 112233334444444 3444557788889999999999999669986544 889999
Q ss_pred EEeccchHHHHHHHHHHHHhcCcee
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
|+.++... ...+..+++.+.|..+
T Consensus 377 fr~~~~~~-~~~~~~~~~~~~gw~v 400 (460)
T COG0076 377 FRLKDDED-TLADLSERLDRRGWQV 400 (460)
T ss_pred EEcCCccc-chhchHHHHHhcCcee
Confidence 99855211 1445566666677776
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-20 Score=173.13 Aligned_cols=300 Identities=14% Similarity=0.112 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhh-------hcCCeEEecCCCcceeeccccccccCCccceeee
Q 018243 38 PTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCE-------TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK 109 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~-------~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 109 (359)
+...++++.+++++|.+++ +..++|+++...+++++.. ...+.|+++...|++... .+...|++++.++
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa---sa~~~G~~Vv~V~ 606 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA---SAAMAGMQVVPVN 606 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH---HHHHCCCEEEEec
Confidence 4567889999999999976 4555666666656666653 234579999999988754 3778899999999
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
.+.+|.+|+++|++.++++ ..++++|++.++.+ +|.+-+ ++++|+++|+++|.++++|.++..+... -.
T Consensus 607 ~d~~G~iDle~L~~~i~~~-----~~~taaV~iT~pst--~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al~~--l~ 675 (939)
T TIGR00461 607 CDQDGNIDLVDLKNKAEQH-----GDELAAVMVTYPST--HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQVG--LT 675 (939)
T ss_pred cCCCCCcCHHHHHHHHhhc-----CCceEEEEEEeCCc--Cceecc--cHHHHHHHHHHcCCEEEEEecChhhCCC--CC
Confidence 8889999999999999831 14788998855544 577643 4999999999999999999997432221 11
Q ss_pred hhHhhhcCccEEEEeccccCCCc-----ee-eEEecCHHHHHHHHH--HHH---------hhCCCc---chhHHHHHHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAP-----VG-SVIVGSKEFIKKARR--LRK---------TLGGGM---RQVGVLCAAAL 249 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~-----~g-g~~~~~~~~~~~~~~--~~~---------~~~~~~---~~~~~~~~~~~ 249 (359)
.... .++|++.+|.||+|++| .| |++.+++++...+.. ... ..+... ..+...+..++
T Consensus 676 ~Pg~--~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~ 753 (939)
T TIGR00461 676 SPGD--LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISW 753 (939)
T ss_pred Cccc--cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHH
Confidence 1222 38999999999999744 22 788888765554321 100 001111 01111222222
Q ss_pred HHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce---EEEEEecc---chHHHHHHHHHHHHhcCceec
Q 018243 250 VAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN---IVYFEITE---DSKLYAACLLKKLEEHGVLVM 319 (359)
Q Consensus 250 ~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~l~~~gi~~~ 319 (359)
..+ .+.+.+..+....+++|+.+.|++ ++++..+...+. -+.++++. ..+.+..++.++|.++|+..-
T Consensus 754 ~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hap 831 (939)
T TIGR00461 754 MYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAP 831 (939)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeecc
Confidence 222 344554666777899999999987 455543321112 24444442 123578899999999999762
Q ss_pred cC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 320 PE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 320 ~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.. ..+.+-|.++...+++|+|++++++.++.+++.+
T Consensus 832 t~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 832 TLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred ccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 1236667776689999999999999998887764
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=161.11 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHhCCCC---eEEcC-CchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC
Q 018243 38 PTAFRLETEMAKVMGKEA---GLFVP-SGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD 113 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~---~~~~~-~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 113 (359)
....++++.++++|+.+. .++++ |||.|+.+++..+.. +++++++.....++... ..+++..|+ +..+..++.
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~-~~~~~l~i~~G~fg~r~-~~~a~~~g~-~~~~~~~~~ 113 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA-EGKVADYIVTGAWSKKA-AKEAKKYGV-VNVVASGKE 113 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-CCCeEEEEECCHHHHHH-HHHHHHhCC-cEEEecccc
Confidence 455788999999999632 45554 599999999999995 88887755555444433 356788887 666654322
Q ss_pred ----CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 114 ----GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 114 ----~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
-.+++++++ ++ +++++|.+.+ ..|.||+..+ ++++.+++++++|.++++|... .
T Consensus 114 ~~~~~~~~~~~~~--~~--------~~~~~v~~th-~ETstGv~~~--------~l~~~~~~l~iVDavss~g~~~---i 171 (349)
T TIGR01364 114 GNYTKIPDPSTWE--IS--------EDAAYVHYCA-NETIHGVEFR--------ELPDVKNAPLVADMSSNILSRP---I 171 (349)
T ss_pred CCCCCCCCHHhcC--CC--------CCCCEEEEcC-CCCcccEecc--------eecccCCCeEEEEccccccCcc---C
Confidence 234555444 22 5788888844 5568999764 5566689999999998776553 2
Q ss_pred hhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH-------HHhh--CCCcchhHH-HHHHHHHHH----HH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL-------RKTL--GGGMRQVGV-LCAAALVAL----QE 254 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~-~~~~~~~~l----~~ 254 (359)
.+.. .|++++|.+|++| |.| |+++.+++..+++... .... ......++. ...+...++ +.
T Consensus 172 d~~~----~d~~~~ssqK~lg-P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~ 246 (349)
T TIGR01364 172 DVSK----FGLIYAGAQKNIG-PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQ 246 (349)
T ss_pred CHHH----ccEEEEecccccC-CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHc
Confidence 3333 3588889999998 667 9999999888765321 1000 111111111 122222233 33
Q ss_pred -hHHHHhhhHHHHHHHHHHHHhcCCCceEecC--Cccc-eEEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEE
Q 018243 255 -NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AVET-NIVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRI 328 (359)
Q Consensus 255 -~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi 328 (359)
..+.+.++..++++++++.|++++|+..... ...+ ..+.+.++.. .. ..++.+.+.++|+.+.++. .+.+|+
T Consensus 247 gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~-~~-~~~~~~~~~~~Gi~~~~~~~~~g~vRv 324 (349)
T TIGR01364 247 GGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE-EL-EKRFLKEAEERGLVSLKGHRSVGGMRA 324 (349)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh-hH-hHHHHHHHHHCCCcccCCccccCeeEE
Confidence 4666777888999999999999977654321 1234 4466776652 22 3677778889999665553 368999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 329 VVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 329 ~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++..+++++|++.++++|++++++
T Consensus 325 S~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 325 SIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ECcCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=168.10 Aligned_cols=310 Identities=15% Similarity=0.101 Sum_probs=202.1
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC
Q 018243 33 VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN 111 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 111 (359)
.+.......+.++..|+.||.+...++.|||+ ++..++.+++ ++||.|++++.+|.|.+. +-..+.|+.++++...
T Consensus 169 L~~~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~h--gaLiLsGa~PVYl~P~ 245 (720)
T PRK13578 169 LLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHH--GALIQAGATPVYLETA 245 (720)
T ss_pred CCCCChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHH--HHHHHcCCeEEEeecc
Confidence 34456667899999999999999988888776 5555666666 699999999999999887 2267889999998433
Q ss_pred CC-----CCCCH-----HHHHHHhcCC-CCCc-cCCceeEEEEeccccCCCceecChhhHHHHHHH-HHHcCcEEEEecc
Q 018243 112 QD-----GTMDI-----DLIEAAIRDP-KGEI-VYPTTRLICLENTHANCGGRCLSVEYTDSVGEI-AKKHGLKLHIDGA 178 (359)
Q Consensus 112 ~~-----~~~~~-----~~l~~~l~~~-~~~~-~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~-~~~~~~~li~D~a 178 (359)
.+ +.++. +.+++.|+++ ++.. ..+..+++++.++. ..|++++ +++|++. ++.++ +|++|||
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT--YdG~~yd---i~~I~~~~~h~~~-~llvDEA 319 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT--YDGTIYN---ARQVVDKIGHLCD-YILFDSA 319 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC--Ccceeec---HHHHHHHhhccCC-cEEEeCc
Confidence 22 34564 4499999875 2211 11225788884444 5699998 7899888 67788 9999999
Q ss_pred cccchhhhcC---chhHhhhcCcc----EEEEeccccCCCcee-eEEecCHHHH---------HHHHHHHHhhCCCcchh
Q 018243 179 RIFNAAVALG---VPVRRLVQAAD----SASVCLSKGLGAPVG-SVIVGSKEFI---------KKARRLRKTLGGGMRQV 241 (359)
Q Consensus 179 ~~~~~~~~~~---~~~~~~~~~~d----~~~~s~~K~~g~~~g-g~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 241 (359)
|+....+... .+...+..++| +++.|.||.+++... +++-.+...+ ++++..-..+. ++|++
T Consensus 320 hgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~q-STSPs 398 (720)
T PRK13578 320 WVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHA-STSPF 398 (720)
T ss_pred chhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHc-CCChH
Confidence 7443322111 22222345777 888899999977555 6665533221 33333322232 24445
Q ss_pred HHHHHHHHHHH---HH-hHHHHhhhHHHHHHHHHHHH-hcCCCceEecCC--------------------------c---
Q 018243 242 GVLCAAALVAL---QE-NVLVMLDGDHKKAKLLAEGL-NQLKGLRVDVDA--------------------------V--- 287 (359)
Q Consensus 242 ~~~~~~~~~~l---~~-~~~~~~~~~~~~~~~l~~~l-~~~~g~~~~~~~--------------------------~--- 287 (359)
..+.+....+- .. .-+...++..+.+..+++.+ +.++++++..++ .
T Consensus 399 Y~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~~w 478 (720)
T PRK13578 399 YPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGEKW 478 (720)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccccCccc
Confidence 44444443322 11 11235666777777888877 556666654210 0
Q ss_pred -------------cceEEEEEeccc---------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 288 -------------ETNIVYFEITED---------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 288 -------------~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
...-+.+..+.- .|+.+..+.+.|+++||.+...+...+-+-++.+.++++++.++++
T Consensus 479 hgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~a 558 (720)
T PRK13578 479 HGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAM 558 (720)
T ss_pred cccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 011122333220 0122788999998789999888888888888889999999999999
Q ss_pred HHHHHHH
Q 018243 346 FQKIYAG 352 (359)
Q Consensus 346 l~~~~~~ 352 (359)
|.++-+.
T Consensus 559 L~~f~~~ 565 (720)
T PRK13578 559 LARFEKH 565 (720)
T ss_pred HHHHHHh
Confidence 9877443
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=150.92 Aligned_cols=312 Identities=15% Similarity=0.166 Sum_probs=199.9
Q ss_pred CCccCCChHHHHHHHHHHHHhCCCCe-------E-EcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCC
Q 018243 31 DDVLMHDPTAFRLETEMAKVMGKEAG-------L-FVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGG 102 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~~~~~-------~-~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g 102 (359)
...|+.+++.+-+|+.+|++...+++ + ++++++.|+...+..++..+.+.|++|-|- ++.|. +.....|
T Consensus 106 ~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQ-YPLYs--Ati~l~~ 182 (475)
T KOG0258|consen 106 LGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQ-YPLYS--ATISLLG 182 (475)
T ss_pred ccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCC-CchhH--HHHHHhC
Confidence 44688899999999999999855432 4 555566778888888887788899999998 56676 3455555
Q ss_pred ccceee--ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccc
Q 018243 103 VHPRTV--KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180 (359)
Q Consensus 103 ~~~~~v--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 180 (359)
...+.+ +.+.+|.+|.++|++.+++.. ..-+++++++.||.| |||.+.+.+.+++|.++|.++++.++.||+|-
T Consensus 183 ~~~v~YyLdEe~~W~ld~~el~~~~~eA~---k~i~~r~lvvINPGN-PTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ 258 (475)
T KOG0258|consen 183 GTQVPYYLDEESNWSLDVAELERSVDEAR---KGINPRALVVINPGN-PTGQVLSEENIEGIICFAAEEGLVLLADEVYQ 258 (475)
T ss_pred CcccceeeccccCCCCCHHHHHHHHHHHh---ccCCceEEEEECCCC-ccchhhcHHHHHHHHHHHHHcCeEEechHHHH
Confidence 555554 556789999999999998754 225778877768776 99999999999999999999999999999964
Q ss_pred cchhhhc--Cchh----Hhhh-cC---ccEEEE-eccccCCC---ceeeEEe---cCHHHHHHHHHHHHh-hCCCcch--
Q 018243 181 FNAAVAL--GVPV----RRLV-QA---ADSASV-CLSKGLGA---PVGSVIV---GSKEFIKKARRLRKT-LGGGMRQ-- 240 (359)
Q Consensus 181 ~~~~~~~--~~~~----~~~~-~~---~d~~~~-s~~K~~g~---~~gg~~~---~~~~~~~~~~~~~~~-~~~~~~~-- 240 (359)
-..+... ..++ .++. .. ...+++ |.||.+.+ ..||++= .+++..+.+.++... .-.+.+.
T Consensus 259 ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~ 338 (475)
T KOG0258|consen 259 DNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQK 338 (475)
T ss_pred hhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchh
Confidence 4333211 1121 1222 12 235666 99999833 4456433 256666555433321 1111100
Q ss_pred -------hHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH-H--------HH
Q 018243 241 -------VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK-L--------YA 304 (359)
Q Consensus 241 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~--------~~ 304 (359)
++.-............+........+++.+.+.+++++|+... ++.+..+.|..+..+.+ + ..
T Consensus 339 ~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn-~~qGAMY~fP~i~lP~kaie~A~~~~~~P 417 (475)
T KOG0258|consen 339 LVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCN-PVQGAMYLFPQISLPPKAIEAAKALGIAP 417 (475)
T ss_pred hhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeec-cCccceeecccccCCHHHHHHHHHhCCCC
Confidence 0000000011111222236677778899999999999999885 44567777766654321 1 11
Q ss_pred H-HHHHHH-HhcCceeccCCCc-------EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 305 A-CLLKKL-EEHGVLVMPESST-------RVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 305 ~-~~~~~l-~~~gi~~~~~~~~-------~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+ -.+.+| +..||.++||+++ .+|..+ +... + .+++.++++=.++.+
T Consensus 418 D~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~Ti---Lp~~-~-~~i~~~~~fH~~f~~ 472 (475)
T KOG0258|consen 418 DEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTI---LPPG-L-EIIEKFKKFHAEFMD 472 (475)
T ss_pred cHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEee---cCch-h-HHHHHHHHHHHHHHH
Confidence 1 233344 8899999998544 588886 3333 3 566666665555543
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=168.44 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=202.1
Q ss_pred CccCCChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+.+.......+.++..|+.||++...+++|||+ ++..++.+++ .+||.|++++.+|.|.+. + ..+.|+.++++..
T Consensus 189 dLl~~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~h-a--Lilsga~PVYl~P 264 (714)
T PRK15400 189 SLLDHSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTH-L--MMMSDVTPIYFRP 264 (714)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHH-H--HHHcCCeEEEecc
Confidence 344456677899999999999999988888865 6666666666 699999999999999887 5 7889999999844
Q ss_pred CCC-----CCCC-----HHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccc
Q 018243 111 NQD-----GTMD-----IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180 (359)
Q Consensus 111 ~~~-----~~~~-----~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 180 (359)
..+ +.++ .+.+++.++++++. .++..+++.++. ..|.+++ ++.|.+.|+.++ |++||||.
T Consensus 265 ~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a---k~p~~~vit~pT--YdG~~yd---~~~I~~~~~~~~--ilvDEAwg 334 (714)
T PRK15400 265 TRNAYGILGGIPQSEFQHATIAKRVKETPNA---TWPVHAVITNST--YDGLLYN---TDFIKKTLDVKS--IHFDSAWV 334 (714)
T ss_pred cccccCCccCCCccccCHHHHHHHHHhCccc---cCccEEEEECCC--CccEecC---HHHHHHHhCCCC--EEEEccch
Confidence 322 3445 89999999876432 223356664443 5699998 788889998887 79999964
Q ss_pred cchhhhcCc-hhHhhhcCc---c--EEEEeccccCCCcee-eEEecCHHHH-HHHHHHHHhhCCCcchhHHHHHHHHHHH
Q 018243 181 FNAAVALGV-PVRRLVQAA---D--SASVCLSKGLGAPVG-SVIVGSKEFI-KKARRLRKTLGGGMRQVGVLCAAALVAL 252 (359)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~~---d--~~~~s~~K~~g~~~g-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (359)
....+.... ....+..++ | +++.|.||.+++... +++-.+..+. ++++..-..+ .++|++..+.+....+-
T Consensus 335 ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~m~-~STSPsY~l~ASLD~a~ 413 (714)
T PRK15400 335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMH-TTTSPHYGIVASTETAA 413 (714)
T ss_pred hhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHHHH-cCCCcHHHHHHHHHHHH
Confidence 433221111 122232344 4 777799999976544 4444322221 2222222222 23444555555544333
Q ss_pred HH----hHHHHhhhHHHHHHHHHHHHhcCCC------ceEecCCc----------------------------cceEEEE
Q 018243 253 QE----NVLVMLDGDHKKAKLLAEGLNQLKG------LRVDVDAV----------------------------ETNIVYF 294 (359)
Q Consensus 253 ~~----~~~~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~~----------------------------~~~~~~~ 294 (359)
.. .-+...++..+.+..+++.+.++++ +++..+.. ...-+.+
T Consensus 414 ~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti 493 (714)
T PRK15400 414 AMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTL 493 (714)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEE
Confidence 21 1223566777788888888887766 55432110 1111333
Q ss_pred Eecc--------chHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 295 EITE--------DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 295 ~~~~--------~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+. ..|+.+..+.+.|+++||.+...+...+-+.++++.++++++.++++|.++-+
T Consensus 494 ~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 494 LTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred EeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3322 02456788999999999999888888899999999999999999999987644
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=164.56 Aligned_cols=304 Identities=16% Similarity=0.138 Sum_probs=200.5
Q ss_pred CccCCChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+.........+.++..|+.||.+...+++|||+ ++..++.+++ .+||.|++++.+|.|.+. + ..+.|+.++++..
T Consensus 189 dLl~~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~-a--Lilsga~PVYl~P 264 (713)
T PRK15399 189 SLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAH-L--LMMSDVVPIWLKP 264 (713)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHH-H--HHHcCCeeEEecc
Confidence 344456677899999999999999988888865 6666666766 699999999999999987 5 7889999999843
Q ss_pred CCC-----CCCCH-----HHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEE-EEeccc
Q 018243 111 NQD-----GTMDI-----DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKL-HIDGAR 179 (359)
Q Consensus 111 ~~~-----~~~~~-----~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~l-i~D~a~ 179 (359)
..+ +.++. +.+++.++++++. .+++.+++.++. ..|.+++ +++|.+.| |+.+ ++||||
T Consensus 265 ~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~---~~p~~vvit~pT--YdGi~yd---~~~I~~~~---g~~~ilvDEAh 333 (713)
T PRK15399 265 TRNALGILGGIPRREFTRDSIEEKVAATTQA---QWPVHAVITNST--YDGLLYN---TDWIKQTL---DVPSIHFDSAW 333 (713)
T ss_pred cccccCCcCCCChhhccHHHHHHHHHhCCCc---CCceEEEEECCC--CCceeeC---HHHHHHHh---CCCEEEEeccc
Confidence 322 34555 8999999976532 244567774443 5699998 67777777 6666 699997
Q ss_pred ccchhhhcC-chhHhhhc--CccEE---EEeccccCCCcee-eEEecCHHHH-HHHHHHHHhhCCCcchhHHHHHHHHHH
Q 018243 180 IFNAAVALG-VPVRRLVQ--AADSA---SVCLSKGLGAPVG-SVIVGSKEFI-KKARRLRKTLGGGMRQVGVLCAAALVA 251 (359)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~--~~d~~---~~s~~K~~g~~~g-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (359)
.....+... .+...+.. ++|.+ +.|.||.+++... +++-.+..+. ++++..-..+ .++|++..+.+....+
T Consensus 334 gah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~-~STSPsY~LmASLD~a 412 (713)
T PRK15399 334 VPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMH-TSTSPSYPIVASVETA 412 (713)
T ss_pred hhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHH-cCCCcHHHHHHHHHHH
Confidence 433322111 11122222 46766 6799999977555 6665543322 2232222222 2344455555554433
Q ss_pred HHH----hHHHHhhhHHHHHHHHHHHHhcCCC------ceEecCC----------------------------ccceEEE
Q 018243 252 LQE----NVLVMLDGDHKKAKLLAEGLNQLKG------LRVDVDA----------------------------VETNIVY 293 (359)
Q Consensus 252 l~~----~~~~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~----------------------------~~~~~~~ 293 (359)
-.. .-+...++..+.+..+++.+.++.+ +++..++ ....-+.
T Consensus 413 ~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~Klt 492 (713)
T PRK15399 413 AAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVT 492 (713)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEE
Confidence 321 1123556677777777887776544 3443210 0111133
Q ss_pred EEecc--------chHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 294 FEITE--------DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 294 ~~~~~--------~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+..+. ..|+.+..+.+.|+++||.+...+...+-+.++++.++++++.++++|.++-+
T Consensus 493 I~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 493 ILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred EEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 44431 12567889999999999999888888888889989999999999999987744
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=162.38 Aligned_cols=329 Identities=15% Similarity=0.084 Sum_probs=199.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcC--CCC--CCccCCChHHHHHHHHHH----HHhC--CCCeEEcCCchHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASA--EVD--DDVLMHDPTAFRLETEMA----KVMG--KEAGLFVPSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~--~~~--~~~~~~~~~~~~l~~~la----~~~~--~~~~~~~~~gt~a~~~ 68 (359)
.++|||.++ +....+|.+.+++.+. ... .......+...++.+.++ +.++ .+.+.+++||++|+..
T Consensus 58 ~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~ 137 (464)
T TIGR00699 58 NRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANEL 137 (464)
T ss_pred CEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHH
Confidence 357899887 4445569999999863 211 111112344455666654 3443 3456899999999999
Q ss_pred HHHHhhhh-------------------------c---CCeEEecCCCcceeeccccccccCCc-----------cceeee
Q 018243 69 SVLVHCET-------------------------R---GSEVILGDNSHIHIYENGGISTIGGV-----------HPRTVK 109 (359)
Q Consensus 69 ~l~~~~~~-------------------------~---g~~vl~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~ 109 (359)
|++.+... + ..+|+....+|..... ++ ....+. ....++
T Consensus 138 AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~-~a-ls~t~~~~~~~~~~~~~~~~~~p 215 (464)
T TIGR00699 138 AFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLF-GS-LSTTRSKPIHKLDIPAFDWPQAP 215 (464)
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccH-HH-HHhcCCccccccCCCCCCceecC
Confidence 99988531 0 1256655554433322 11 111111 111111
Q ss_pred cCC-CC-------------CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEE
Q 018243 110 NNQ-DG-------------TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 110 ~~~-~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li 174 (359)
.+. .. .-+++.+++.++++. .++.+|++++...+ .|... +.+++++++++|++||+++|
T Consensus 216 ~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~iAAvI~EPv~g~-~G~~~~~~~yl~~lr~lc~~~g~lLI 289 (464)
T TIGR00699 216 FPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWH-----KPVAAIIVEPIQSE-GGDNHASPDFFRKLRDITKKHNVAFI 289 (464)
T ss_pred CCCcccccccccccchhHHHHHHHHHHHHHHhcC-----CcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 111 00 013556777776321 46999999998884 46654 67999999999999999999
Q ss_pred EecccccchhhhcCch--hHhhh--cCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHH
Q 018243 175 IDGARIFNAAVALGVP--VRRLV--QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALV 250 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~~--~~~~~--~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (359)
+||++... ...|.. ...+. ..+|++ +++|.+|+ ||++++++.+ ... .....++++..++..++++..
T Consensus 290 ~DEV~tGf--GrtG~~fa~e~~gv~~~PDi~--t~gK~lg~--gG~~~~~~~~-~~~--~~~~~~~T~~gnp~~~aaa~a 360 (464)
T TIGR00699 290 VDEVQTGV--GATGKFWAHEHWNLDDPPDMV--TFSKKFQT--AGYFFHDPAF-RPN--KPYRQFNTWMGDPSRALILRE 360 (464)
T ss_pred EeeeeeCC--CCCcchhHHHhcCCCCCCCEE--Eehhhhcc--CCccccchhc-cCC--CCcccccCCCCCHHHHHHHHH
Confidence 99998432 222322 11111 137765 55798752 2333343221 100 111245566667777888887
Q ss_pred HHHHhHH-HHhhhHHHHHHHHHHHHhcC----CC-ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCc
Q 018243 251 ALQENVL-VMLDGDHKKAKLLAEGLNQL----KG-LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESST 324 (359)
Q Consensus 251 ~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 324 (359)
.++...+ +..++..++.++|++.|+++ |. +.-......+.++.+.++.. .....+.+.+.++|+.+.+.+..
T Consensus 361 ~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--~~~~~i~~~~~~~Gvl~~~~g~~ 438 (464)
T TIGR00699 361 IIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--AKRDKLLKKARNNGVNIGGCGVK 438 (464)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH--HHHHHHHHHHHHCCcEEecCCCC
Confidence 8765543 34455666667777777654 31 21111114677777777542 24678889999999999777778
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 325 RVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 325 ~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+||.++..++++|++.++++|.+++
T Consensus 439 ~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 439 AIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=159.87 Aligned_cols=254 Identities=23% Similarity=0.300 Sum_probs=166.3
Q ss_pred ccCCChHHHHHHHH----HHHHhCCC---------CeEEcCCchHHHHHHHHHhhhh-------cC-----C-eEEecCC
Q 018243 33 VLMHDPTAFRLETE----MAKVMGKE---------AGLFVPSGTMGNLISVLVHCET-------RG-----S-EVILGDN 86 (359)
Q Consensus 33 ~~~~~~~~~~l~~~----la~~~~~~---------~~~~~~~gt~a~~~~l~~~~~~-------~g-----~-~vl~~~~ 86 (359)
.+..+|...++|+. +++++|.+ .++++++||++++.++.++..+ .+ + .|++++.
T Consensus 70 ~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~ 149 (373)
T PF00282_consen 70 TWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQ 149 (373)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETT
T ss_pred ccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence 45556777666665 56667877 2489999999999999887531 12 2 4778888
Q ss_pred CcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 87 SHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
+|++..+ + +...|+.++.|+.++++.+|+++|++.+++..+. ..+.++++.+...+.+|.+ |++++|.++|
T Consensus 150 aH~S~~K-a--a~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~---g~~p~~vvat~Gtt~~Ga~---D~l~~i~~i~ 220 (373)
T PF00282_consen 150 AHYSIEK-A--ARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN---GKTPFAVVATAGTTNTGAI---DPLEEIADIC 220 (373)
T ss_dssp S-THHHH-H--HHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT---TEEEEEEEEEBS-TTTSBB----SHHHHHHHH
T ss_pred cccHHHH-h--cceeeeEEEEecCCcchhhhHHHhhhhhcccccc---cccceeeeccCCCcccccc---cCHHHHhhhc
Confidence 9999876 4 8888989999999999999999999998742211 2334445557777778886 5599999999
Q ss_pred HHcCcEEEEecccccchhhhcC-chhHhhhcCccEEEEeccccCCCcee-eEEec-CHHHHHHHH-HHHHhhC-------
Q 018243 167 KKHGLKLHIDGARIFNAAVALG-VPVRRLVQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKAR-RLRKTLG------- 235 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~-~~~~~~~------- 235 (359)
+++++|++||.|++...+.... .....-...+|.+++++||+++.|.+ |+++. ++....... ....+.+
T Consensus 221 ~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~ 300 (373)
T PF00282_consen 221 EKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESD 300 (373)
T ss_dssp HHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-
T ss_pred cccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccc
Confidence 9999999999996432232121 12222235889999999999999987 65554 554443311 0001111
Q ss_pred ---------CCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 236 ---------GGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 236 ---------~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
...+- ...+...+..+ .+...+..++..++++++.+.|++.+++++.. +...++++|+++
T Consensus 301 ~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~-~~~~~~vcFr~k 373 (373)
T PF00282_consen 301 ESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN-EPDLNIVCFRYK 373 (373)
T ss_dssp GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-TTSSSEEEEEES
T ss_pred cccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc-CCCceEEEEEeC
Confidence 11111 12222223333 24445588888899999999999998999865 458888888763
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=159.22 Aligned_cols=325 Identities=16% Similarity=0.191 Sum_probs=195.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++ +....+|.+.+++.+.......+. ..+...++.+.+++.++ .+...+++||++|+..+++.+..-
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~ 127 (431)
T PRK06209 48 NEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAY 127 (431)
T ss_pred CEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHH
Confidence 357899876 344555899988887654332333 23334567888888874 356789999999999999988764
Q ss_pred cCCe-EEec-CCCccee---eccccccccCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 77 RGSE-VILG-DNSHIHI---YENGGISTIGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 77 ~g~~-vl~~-~~~~~~~---~~~~~~~~~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
.|.. |+.. ...|.+. +. +......+. .+..++.+ |++.+++.+++.. .++++|++++.
T Consensus 128 tgr~~i~~~~~~~~h~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~-----~~~aavi~Epv 196 (431)
T PRK06209 128 TGRDLVARCADHPFFSTDDWFI-GTTPMSAGIPASVSALTVTFRYN-----DIASLEALFEDHP-----GRIACVILEPA 196 (431)
T ss_pred hCCCeEEEeccCcccccccccc-ccCCCCCCCChhHhccccccCCC-----CHHHHHHHHHhCC-----CCEEEEEEccc
Confidence 5544 4332 1221110 10 000111111 11222322 8899999887421 46788999886
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh-hhcCccEEEEeccccCCCc-eeeEEecCHHH
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR-LVQAADSASVCLSKGLGAP-VGSVIVGSKEF 223 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~d~~~~s~~K~~g~~-~gg~~~~~~~~ 223 (359)
.. ...+.+++++|.++|++||+++|+||+|. |... .+..... +...+|+ .+++|.+|++ .+|.+++++++
T Consensus 197 ~g----~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~-~~~g~~~~~gv~PDi--~t~gK~lggG~p~~av~~~~~i 268 (431)
T PRK06209 197 TA----DEPQDGFLHEVRRLCHENGALFILDEMIT-GFRW-HMRGAQKLYGIVPDL--SCFGKALGNGFAVSALAGKREY 268 (431)
T ss_pred cC----CCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCc-CcchhhHHhCCCcce--eeehhhhcCCcccEEEEEHHHH
Confidence 54 46678999999999999999999999983 3322 1111121 2224565 5667999753 23667778888
Q ss_pred HHH--HHHH--HH--hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceEecCCccceE-
Q 018243 224 IKK--ARRL--RK--TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRVDVDAVETNI- 291 (359)
Q Consensus 224 ~~~--~~~~--~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~- 291 (359)
.+. +... .. .++.++..++..++++..+++...+ ..+++..++.+++++.|++ . ++.......+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~-~~~~~vr~~G~~~~ 347 (431)
T PRK06209 269 MELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEH-GLQDHVRVSGRPCC 347 (431)
T ss_pred HhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeecceEE
Confidence 775 2111 11 1344555556777777777765433 2455666667777777655 3 3332111112222
Q ss_pred -EEEEec---cchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 292 -VYFEIT---EDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 292 -~~~~~~---~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++... .+.......+.+.|.++|+.+.+ ++++ ..++++++++++++++++++++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 348 LTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred EEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCCHHHHHHHHHHHHHHHHHHH
Confidence 222111 11111234677888899997622 3444 47899999999999999998874
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-18 Score=139.52 Aligned_cols=340 Identities=21% Similarity=0.279 Sum_probs=236.6
Q ss_pred cccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh----hcCC
Q 018243 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE----TRGS 79 (359)
Q Consensus 5 ~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~----~~g~ 79 (359)
.||+-+|+-+.. +.....+|.. ++..|+.+.....|...+.+.||.+..+-+..|..|-...+..++. .+|.
T Consensus 48 ~IDLLTDSGTgams~~qwaamm~---GDEAYagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~ 124 (471)
T COG3033 48 FIDLLTDSGTGAMTDKQWAAMMR---GDEAYAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGS 124 (471)
T ss_pred EEEeeccCCcccccHHHHHHHhc---cchhhcccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCc
Confidence 478888766654 4777778776 7778999999999999999999999888888886665554444442 3566
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+.++++..|+.+.. +..+..|..++.+..++ .|.+|++.|++.|++. +..++..|++.-+.|..
T Consensus 125 ~~~~~sN~~FdTTr--~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidev----G~~nvp~I~~tiT~Nsa 198 (471)
T COG3033 125 KMVAFSNYHFDTTR--GHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEV----GADNVPYIVLTITNNSA 198 (471)
T ss_pred cccccccceecchh--HHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHh----CcccCcEEEEEEecccc
Confidence 77888889888877 45777777777664332 2788999999999963 22456677776677778
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchh--------hhcCchhHhh----hcCccEEEEeccccCCCceeeEE
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA--------VALGVPVRRL----VQAADSASVCLSKGLGAPVGSVI 217 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~--------~~~~~~~~~~----~~~~d~~~~s~~K~~g~~~gg~~ 217 (359)
+|+..+.+.++++.++|++|+++++.|.++-.-.. .+.+.+..++ ...+|-+++|.-|---.+.||++
T Consensus 199 gGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl 278 (471)
T COG3033 199 GGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFL 278 (471)
T ss_pred CCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEE
Confidence 89999999999999999999999999977521111 1223344333 25789999999998777889988
Q ss_pred ecCHH----HHHHHHHHHHh-hCCCc--chhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCCccc
Q 018243 218 VGSKE----FIKKARRLRKT-LGGGM--RQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVET 289 (359)
Q Consensus 218 ~~~~~----~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~ 289 (359)
+.+++ +...++..... .|..+ .+.+-.+.+...+|.+..+ +.++...+..++|.+.|.+. |+.+.. |.++
T Consensus 279 ~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~-GVpi~~-paGG 356 (471)
T COG3033 279 CFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA-GVPIVQ-PAGG 356 (471)
T ss_pred EecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc-CCeeEe-cCCC
Confidence 87544 44454433221 11111 1233344444445544432 46666778889999999999 998754 4566
Q ss_pred eEEEEEecc------chHHHHHHHHHHH-HhcCceeccCC-----------------CcEEEEEe-CCCCCHHHHHHHHH
Q 018243 290 NIVYFEITE------DSKLYAACLLKKL-EEHGVLVMPES-----------------STRVRIVV-HHQISANDVHYTLS 344 (359)
Q Consensus 290 ~~~~~~~~~------~~~~~~~~~~~~l-~~~gi~~~~~~-----------------~~~lRi~~-~~~~~~~~i~~~~~ 344 (359)
.-+++.... .+...++.|..+| ++.||..+..| ...+|+.+ ....+.+++|.+++
T Consensus 357 Havfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~ 436 (471)
T COG3033 357 HAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIE 436 (471)
T ss_pred ceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHH
Confidence 666665421 1234677888888 88999874321 13589885 33568899999999
Q ss_pred HHHHHHHHHHh
Q 018243 345 CFQKIYAGVCE 355 (359)
Q Consensus 345 ~l~~~~~~~~~ 355 (359)
.++++.+.-.+
T Consensus 437 a~~~l~e~~~~ 447 (471)
T COG3033 437 AFKALKENAED 447 (471)
T ss_pred HHHHHHhcccc
Confidence 99988876543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=150.01 Aligned_cols=305 Identities=13% Similarity=0.118 Sum_probs=203.5
Q ss_pred HH-HHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCC--C-e-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcce
Q 018243 18 EA-MRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKE--A-G-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90 (359)
Q Consensus 18 ~~-~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~--~-~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~ 90 (359)
|. .++++.+...+....+ ......++++.+.++++.+ + + ++..|||.++.+++..++.++|+++++.. . ++
T Consensus 16 ~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~-FG 93 (374)
T TIGR01365 16 PGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-S-FG 93 (374)
T ss_pred chhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-H-HH
Confidence 66 7777776554433222 2455678889999999974 2 2 56788999999999999844788888754 3 44
Q ss_pred eeccccccccCCc-cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc
Q 018243 91 IYENGGISTIGGV-HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH 169 (359)
Q Consensus 91 ~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~ 169 (359)
......+++..|+ ++..+..+....+++++++. + .. |++ ..+.+.||+..|. +++.+.. +
T Consensus 94 ~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~--------~~---v~~-vhnETSTGv~npv---~~i~~~~--~ 154 (374)
T TIGR01365 94 KGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K--------ND---VVF-TWNGTTSGVRVPN---GDFIPAD--R 154 (374)
T ss_pred HHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C--------CC---EEE-ecCCCchheeccc---ccccccc--C
Confidence 3321135677888 47777666666778888872 2 22 344 4566689999884 4444222 5
Q ss_pred CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH------H----------
Q 018243 170 GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR------K---------- 232 (359)
Q Consensus 170 ~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~------~---------- 232 (359)
+.++|+|.+.++|... ..+. ..|+++.|..|++++|.| ++++.+++.+++.+... .
T Consensus 155 ~~lliVDavSs~g~~~---l~~d----~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~ 227 (374)
T TIGR01365 155 EGLTICDATSAAFAQD---LDYH----KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKL 227 (374)
T ss_pred CCcEEEEccchhcCCC---CChh----HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccch
Confidence 8999999987666543 2222 489999999999999999 88888888877655211 0
Q ss_pred ---hh-CCCcchhHHHHH-HHHHHH----HH-hHHHHhhhHHHHHHHHHHHHhcCCC-ceEecC--CccceE-EEEEecc
Q 018243 233 ---TL-GGGMRQVGVLCA-AALVAL----QE-NVLVMLDGDHKKAKLLAEGLNQLKG-LRVDVD--AVETNI-VYFEITE 298 (359)
Q Consensus 233 ---~~-~~~~~~~~~~~~-~~~~~l----~~-~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~~--~~~~~~-~~~~~~~ 298 (359)
.. +.+...++.... +...++ ++ .++.+.+++.++++.++++++++ | +.+... ...++. ..+.++.
T Consensus 228 ~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l-g~l~~~~~~~~~rS~tvt~v~~~~ 306 (374)
T TIGR01365 228 NKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKN-NWIHFLAETPEIRSNTSVCLKVVD 306 (374)
T ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCChhhcCCCeEEEEeCC
Confidence 01 112222222222 223333 22 57778889999999999999999 7 666432 223443 3345433
Q ss_pred c--------hHHH-HHHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 299 D--------SKLY-AACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 299 ~--------~~~~-~~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+ ..++ ..++.+.|+++||.+.++. +..+||.....++.+|++.+++.|+=+..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 307 PAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred ccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 1 1122 5889999999999886552 36799998889999999999999986654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=147.73 Aligned_cols=335 Identities=16% Similarity=0.194 Sum_probs=237.1
Q ss_pred ccccccCCCCCChH--HHHHHHH----HcCCCC----CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT--EAMRAAM----ASAEVD----DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~--~~~~~a~----~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
..+||+|.|+..-. +++++.. .+.-.+ ...|+.-..+.+++..|++++|.+..++++.|-.++..++.+.
T Consensus 95 ~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ipaf 174 (467)
T KOG1358|consen 95 DVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAF 174 (467)
T ss_pred eeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhhcchhh
Confidence 45788888876322 4444444 332111 1237777788999999999999999999999999999999999
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCC-CccCCc----eeEEEEeccccC
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKG-EIVYPT----TRLICLENTHAN 148 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~~~~----~~~v~i~~~~~~ 148 (359)
+ ++||-+.+.+..++...+ | .++..-.++++.++ |.+++++.+.+... ....++ .+.|+++....
T Consensus 175 s-KrGDIi~~de~~nfaIq~-G--lqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~- 244 (467)
T KOG1358|consen 175 S-KRGDIIFVDEAVNFAIQK-G--LQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYA- 244 (467)
T ss_pred h-ccCcEEEEehhhhHHHHH-H--HhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeecc-
Confidence 9 599999999988887665 5 66777677777776 88899888776431 111112 45677888888
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh----cCccEEEEeccccCCCceeeEEecCHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV----QAADSASVCLSKGLGAPVGSVIVGSKEFI 224 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~~K~~g~~~gg~~~~~~~~~ 224 (359)
++|.+.| +.+|.++..+|-..+|.|+..++|..+..|....+.. ...|+++.|+.-.++. .||+.+++.-..
T Consensus 245 N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~GgFc~G~~~i~ 320 (467)
T KOG1358|consen 245 NTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GGGFCAGKSFIA 320 (467)
T ss_pred CCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cCceeecceeeE
Confidence 5899888 8999999999999999999999999887666544432 3667888888887774 667777754444
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch--
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS-- 300 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-- 300 (359)
+.-+.-...+-...+.++.++.++..++.... .++.+........+.+.|+...++.+.. ...++++.+.+....
T Consensus 321 ~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~-~~~SPi~hl~l~~~~~s 399 (467)
T KOG1358|consen 321 DHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSG-SPESPIIHLQLERSYGS 399 (467)
T ss_pred eeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEec-CcCCceeeeeecccccc
Confidence 33221112222223345677777777664332 2356667777778888888877788754 458888888876521
Q ss_pred ----HHHHHHHHHHHHhcCceeccC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 ----KLYAACLLKKLEEHGVLVMPE----------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ----~~~~~~~~~~l~~~gi~~~~~----------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..-.++++++...+|+.+... -+..+||+++..+++++++++.+.|++....+
T Consensus 400 ~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 400 REKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred hHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 123445666664458877321 23479999999999999999999999887653
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=138.88 Aligned_cols=337 Identities=16% Similarity=0.142 Sum_probs=194.6
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCC--CCccCC-ChHHHHHHHHHHHHh---CCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVD--DDVLMH-DPTAFRLETEMAKVM---GKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~--~~~~~~-~~~~~~l~~~la~~~---~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++- +...+|++.+++.+.... +...++ .....++++.+.+.. ..+.+.++.|||+|++.||..
T Consensus 56 ~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~ 135 (433)
T KOG1401|consen 56 KEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKF 135 (433)
T ss_pred ceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHH
Confidence 4689999872 223349999999875433 221111 222667788888888 555678999999999999999
Q ss_pred hhhhc-----CC--eEE-ecCCCcceeeccccccccCCccceeeec---CCC----CCCCHHHHHHHhcCCCCCccCCce
Q 018243 73 HCETR-----GS--EVI-LGDNSHIHIYENGGISTIGGVHPRTVKN---NQD----GTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 73 ~~~~~-----g~--~vl-~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~----~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
++... .+ +++ +.+.+|....- + ....+......+. .++ -.-|..++++.++.+. ..+
T Consensus 136 Ark~~~~~~~~~~t~~Iaf~nsyHG~tlg--a-ls~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~-----~~I 207 (433)
T KOG1401|consen 136 ARKFTGKKHPEKKTKFIAFENSYHGRTLG--A-LSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK-----GEI 207 (433)
T ss_pred HHHhhcccCCccceeEEEEecCcCCcchh--H-HHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC-----Cce
Confidence 87411 11 255 55555554442 2 2211222222211 011 0117899999999632 358
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eE
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SV 216 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~ 216 (359)
.+|++++...+.+-..++.+++..|+++|+++|+++|.||++........+....-+...+|+. ++.|.++++.- |+
T Consensus 208 aAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~--t~aK~L~gGlPigA 285 (433)
T KOG1401|consen 208 AAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDIT--TVAKPLGGGLPIGA 285 (433)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcce--eehhhccCCceeEE
Confidence 9999999998543345677999999999999999999999964322221111222222345644 56688854333 55
Q ss_pred EecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHH----HHHHHHHHhcCCCceEecCCccce
Q 018243 217 IVGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKK----AKLLAEGLNQLKGLRVDVDAVETN 290 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~----~~~l~~~l~~~~g~~~~~~~~~~~ 290 (359)
..+++++.+.+..-. -..|++++.+++.+.++...++...+ +.+++.... ++.+.+.+.+.+.... ..-..+.
T Consensus 286 ~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~-g~~grgl 364 (433)
T KOG1401|consen 286 TGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC-GGVGRGL 364 (433)
T ss_pred EeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee-eeeeeEE
Confidence 667888888875322 24577777788888888888854432 233444444 4444444444322211 1122444
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCceeccCC----CcEEEEEe----CCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITEDSKLYAACLLKKLEEHGVLVMPES----STRVRIVV----HHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.+.+..+ ...+.+..++.|..+.+++ .+.+|+.+ ...+++|.++++++++.+.++++.
T Consensus 365 ~ig~~~~~p----~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 365 VIGFEFEGP----VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred EEEEEEeec----hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHHHHHHHHhc
Confidence 555554432 1122222222222221111 12344433 213458889999999988887653
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-17 Score=135.41 Aligned_cols=333 Identities=18% Similarity=0.178 Sum_probs=205.9
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCC--CC--ccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVD--DD--VLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
.+++|+.++. ....+|++.+++.+.... +. .|. .+...++.+.+.+.+..+ ...|++||++|+..+++.
T Consensus 50 ~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~-~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~m 128 (442)
T KOG1404|consen 50 RRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYL-NPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKM 128 (442)
T ss_pred ceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecccc-CCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHH
Confidence 4678888873 346679999999886532 11 233 455677777777777554 358899999999999999
Q ss_pred hhhhcCC-eEE-ecCCCcceeeccccccccCCccceee--------------ecCCCCCC--C-----HHHHHHHhcCCC
Q 018243 73 HCETRGS-EVI-LGDNSHIHIYENGGISTIGGVHPRTV--------------KNNQDGTM--D-----IDLIEAAIRDPK 129 (359)
Q Consensus 73 ~~~~~g~-~vl-~~~~~~~~~~~~~~~~~~~g~~~~~v--------------~~~~~~~~--~-----~~~l~~~l~~~~ 129 (359)
+..-.+. +++ ..+.+|..... .+.+.+...... |....+.+ + .+.+.+.+++..
T Consensus 129 ar~Yt~~~diIa~r~~YHG~t~~---t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i 205 (442)
T KOG1404|consen 129 ARLYTGNLDIIARRNSYHGNTLY---TLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLI 205 (442)
T ss_pred HHHhcCCceEEEeeccccCCchh---hcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHH
Confidence 8753332 344 55555554432 133333322221 11111100 1 233333333221
Q ss_pred CCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh---cCccEEEEec
Q 018243 130 GEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV---QAADSASVCL 205 (359)
Q Consensus 130 ~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~ 205 (359)
.......+++++.++.... +|+ .++..++++..++|+++|.++|.||++...... | .+..+. -.+| +.++
T Consensus 206 ~~~~~~~vAafiaEtIqGv-gG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRt--G-~~wgfe~h~v~PD--IvTm 279 (442)
T KOG1404|consen 206 LYDGPETVAAFIAETIQGV-GGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRT--G-HMWGFESHGVVPD--IVTM 279 (442)
T ss_pred HhcCCCceeEEEeehhccC-CccccCCchHHHHHHHHHHHcCCEEEehhhhhccccc--c-ccccccccCCCcc--HHHH
Confidence 1122246888999998884 455 467799999999999999999999998554333 4 333332 1234 3478
Q ss_pred cccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHH-HhhhHHHHHHHHHHHHhcCC-CceE
Q 018243 206 SKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLV-MLDGDHKKAKLLAEGLNQLK-GLRV 282 (359)
Q Consensus 206 ~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~-g~~~ 282 (359)
.|.+|.... |.++..+++.+.+.+... +..++...+..++++...++-..++ ..++..+...+|.+.|.++. ..++
T Consensus 280 AKgiGnG~Pl~AVvtt~EIa~v~~~~~~-~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~i 358 (442)
T KOG1404|consen 280 AKGIGNGFPLGAVVTTPEIADVLNQKSS-HFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPI 358 (442)
T ss_pred HhhccCCCcceeeecCHHHHHHHHhccc-cccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 888864332 446677788887764432 3344445667777778777654443 44556677888888888751 2222
Q ss_pred ecC-CccceEEEEEeccc-------hHHHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 283 DVD-AVETNIVYFEITED-------SKLYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+.+ +..+-++-+.+..+ .......+.+.+++.|+.+-.+ ....+||.++.+.|++|++.+++..
T Consensus 359 IGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 359 IGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred eeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 211 33455555555331 1124557888889999999433 2347999999999999998777766
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-19 Score=138.09 Aligned_cols=165 Identities=30% Similarity=0.422 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHh--CCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCC
Q 018243 40 AFRLETEMAKVM--GKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMD 117 (359)
Q Consensus 40 ~~~l~~~la~~~--~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 117 (359)
..++++.+++++ +.+..+++++|++|+..++..+. +++++|+++++.|++... ......|.+++.++.+.++..+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYW--VAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehh--hHHHhcCCEEEEeccCCCCccc
Confidence 468899999999 77777899999999999999998 478999999999988873 2367788899988766554333
Q ss_pred HH--HHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 118 ID--LIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 118 ~~--~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
.+ .+++.... .++++++++++. |++|...+ +++|.++|+++|+++|+|++|..+...... .....
T Consensus 79 ~~~~~~~~~~~~-------~~~~~v~~~~~~-~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~ 145 (170)
T cd01494 79 LDVAILEELKAK-------PNVALIVITPNT-TSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG--VLIPE 145 (170)
T ss_pred hhhhhhhhcccc-------CceEEEEEecCc-CCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc--ccccc
Confidence 32 44443332 678899885555 48888877 589999999999999999998665554211 11122
Q ss_pred cCccEEEEeccccCCCceeeEEecC
Q 018243 196 QAADSASVCLSKGLGAPVGSVIVGS 220 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~gg~~~~~ 220 (359)
.++|+++.|++|+|+++.+|+++.+
T Consensus 146 ~~~d~~~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 146 GGADVVTFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred ccCCEEEEEcccccCCCceEEEEeC
Confidence 4789999999999998666887653
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=143.21 Aligned_cols=316 Identities=13% Similarity=0.144 Sum_probs=199.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCC------------CCCccCCChHHHHHHHHHHHHhCCCC---e-EEcCCchHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEV------------DDDVLMHDPTAFRLETEMAKVMGKEA---G-LFVPSGTMGNLI 68 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~~~~~---~-~~~~~gt~a~~~ 68 (359)
.++|..+....| ++|++++.+... ++..-.......++++.+.++++.+. + ++..|||.++.+
T Consensus 8 ~~~f~pGP~~lp-~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 8 VFNFSAGPATLP-ANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred eEeeeCCCCCCC-HHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 455655444443 777777776421 11111123556888899999999853 3 445778889999
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCC---CCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDG---TMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
++..++. +|+++++.....++... ...++..|...+........ .+++++++ .+ ++.+.|.+ ..
T Consensus 87 ~~~nl~~-~~~~~l~~~~G~fg~r~-~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~v~~-~h 153 (365)
T PLN02452 87 IPLNLCK-PGDKADFVVTGSWSKKA-AKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LT--------PDAKFVHI-CA 153 (365)
T ss_pred HHHhcCC-CCCeEEEEECCHHHHHH-HHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CC--------CCCcEEEE-CC
Confidence 9999884 78877765555555432 24566677544333211221 34666542 12 46778888 55
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHH
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFI 224 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~ 224 (359)
+++.||+.+. +++++. ++++++|.+++++... ..+..+ +++..|.+|++| |.| |+++.+++++
T Consensus 154 nETstGv~~~--~~~~i~------~~~lvVDa~Ss~g~~p---idv~~~----~v~~~saqK~lG-P~Gl~~v~vr~~~l 217 (365)
T PLN02452 154 NETIHGVEFK--DYPDVG------NVPLVADMSSNFLSKP---VDVSKY----GVIYAGAQKNVG-PSGVTIVIIRKDLI 217 (365)
T ss_pred CCCCCcEecC--cccccC------CCeEEEECCccccCcc---cCHHHc----CEEEEecccccC-CCCeEEEEEcHHHH
Confidence 7779999633 244443 3899999998775543 333333 344569999998 777 9999998888
Q ss_pred HHHHHHHH-h--------hCCCcchhHHH-HHHH---HHHHHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEe-cC-C-
Q 018243 225 KKARRLRK-T--------LGGGMRQVGVL-CAAA---LVALQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVD-VD-A- 286 (359)
Q Consensus 225 ~~~~~~~~-~--------~~~~~~~~~~~-~~~~---~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~-~- 286 (359)
++...... . .+.....++.. ..+. +..+.+ .++.+.++.++++++|++.|++.+|+-.. .. .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~ 297 (365)
T PLN02452 218 GNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSV 297 (365)
T ss_pred hhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHH
Confidence 76432111 0 01111112211 1122 223332 46667788889999999999997777211 11 1
Q ss_pred ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.....+.|.++.. ...++|.+.++++|+...+|.+ +.+|+++...++.++++.+++.+++.-++
T Consensus 298 rs~~~vsF~~~~~--~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 298 RSLMNVPFTLGGS--ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred hCCeEEEEEcCCc--hhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 1233567777763 3778999999999999977642 34999998899999999999999877654
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=153.16 Aligned_cols=337 Identities=16% Similarity=0.135 Sum_probs=203.7
Q ss_pred ccccccCC----CCC-ChHHHHHHHHHcCCCCCCc--c--CCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSD----TVT-KPTEAMRAAMASAEVDDDV--L--MHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~----~~~-~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
+++|+.++ +.. ..+|++.+++.++...... + ...+...+|.+.|.+..+. +.+++++||++|++.|++
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlK 445 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALK 445 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHH
Confidence 57888876 333 2368899998875543221 1 1345667788888886652 356889999999999999
Q ss_pred Hhhh-h-------------------cCCeEEec-CCCcceeeccccccccCCc--------c------ceeeecCC----
Q 018243 72 VHCE-T-------------------RGSEVILG-DNSHIHIYENGGISTIGGV--------H------PRTVKNNQ---- 112 (359)
Q Consensus 72 ~~~~-~-------------------~g~~vl~~-~~~~~~~~~~~~~~~~~g~--------~------~~~v~~~~---- 112 (359)
.++. - ...+|+.- ..+|+.+.- + ....+. . ...++.+.
T Consensus 446 mA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~G--A-ms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~ 522 (817)
T PLN02974 446 MAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLG--A-MEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMR 522 (817)
T ss_pred HHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHH--H-HhhCCchhhhcccccccccCCCcccCCCccccc
Confidence 8842 0 12346644 445544432 1 111110 0 00111000
Q ss_pred ----------CC-----------C-----CC------------HHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee-
Q 018243 113 ----------DG-----------T-----MD------------IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC- 153 (359)
Q Consensus 113 ----------~~-----------~-----~~------------~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~- 153 (359)
.+ . ++ .+.+++.|++.....+..++.+|++++.....+|+.
T Consensus 523 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~ 602 (817)
T PLN02974 523 NGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLL 602 (817)
T ss_pred cccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCccc
Confidence 00 0 00 245666665311111125789999999633245775
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH--hhhcCccEEEEeccccCCCce-e-eEEecCHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR--RLVQAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARR 229 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~ 229 (359)
++.+++++++++|++||+++|+||++... +..|.... .+...+|++ .++|.++++. . |.+++++++.+.+..
T Consensus 603 ~~~~yl~~lr~lc~~~gilLI~DEV~TGf--GRtG~~fa~e~~gv~PDIi--~~gKgLtgG~~Plaa~l~~~~I~~~f~~ 678 (817)
T PLN02974 603 IDPLFQRALVQVCRSRKIPVIFDEVFTGL--WRLGVESAWELLGCKPDIA--CYAKLLTGGLVPLAATLATEEVFEAFRG 678 (817)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeecccCC--CcccchhhHHhcCCCCCEE--eecccccCCCCccEEEEEcHHHHHhhcc
Confidence 56799999999999999999999996432 22343222 222346666 4558775431 2 557778888887642
Q ss_pred H----HHhhCCCcchhHHHHHHHHHHHHHhHH-----HHhhhHHHHHHHHHHHH----hcCCCceEecCCccceEEEEEe
Q 018243 230 L----RKTLGGGMRQVGVLCAAALVALQENVL-----VMLDGDHKKAKLLAEGL----NQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 230 ~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~~~l----~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
- ....+.++...++.++++...++...+ ...++..+..+++.+.| ++.|.+.-. ...+.++.+.+
T Consensus 679 ~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~V--Rg~Gl~~~iel 756 (817)
T PLN02974 679 PSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERV--VSLGTVLALEL 756 (817)
T ss_pred ccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE--EeeeeEEEEEE
Confidence 1 113567777788889999888865443 22333334444444444 445444322 23566666666
Q ss_pred ccch---H---HHHHHHHHHHH-hcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 297 TEDS---K---LYAACLLKKLE-EHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 297 ~~~~---~---~~~~~~~~~l~-~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+. + ..+..+.+.+. ++|+.+.+.+ +.+++.+++.++++++++++++|.+.+
T Consensus 757 ~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 757 DAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred ecCCcccccchHHHHHHHHHHHHhCCEEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4321 1 12456778887 9999998865 689998888999999999999998765
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-17 Score=145.27 Aligned_cols=295 Identities=19% Similarity=0.172 Sum_probs=192.3
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchH-HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC-
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTM-GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD- 113 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~-a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~- 113 (359)
......+.++..++.||.++..|+.|||+ |+..++.+.+ .+||.|++++++|.|... + .-+.|+.++++....+
T Consensus 68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~-g--lilaGa~Pvyl~p~~np 143 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHH-G--LILAGATPVYLEPSRNP 143 (557)
T ss_pred CCccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHH-H--HHHcCCceEEecCCCCc
Confidence 34557899999999999999988887775 5556666666 699999999999999887 4 7788999999844333
Q ss_pred -----CCCCHHHHHHHhcCCCCCccCCce-eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc
Q 018243 114 -----GTMDIDLIEAAIRDPKGEIVYPTT-RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL 187 (359)
Q Consensus 114 -----~~~~~~~l~~~l~~~~~~~~~~~~-~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 187 (359)
+.++.+.+++.+.++ +.. +++++.++. ..|++++ +++|.+.++.+++|+.+|++|....-...
T Consensus 144 ~~gi~ggI~~~~~~~~l~~~------~~~~k~~vitnpT--YdGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~ 212 (557)
T COG1982 144 LYGIIGGIPLETFKEALLAH------PDAEKLAVITNPT--YDGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSP 212 (557)
T ss_pred cccccCCCCHHHHHHHHHhC------hhhheeEEEecCc--cceEeec---HHHHHHHHhhcCceEEhhhcCcccccccc
Confidence 678999999999875 333 667774444 4699998 79999999999999999999755433222
Q ss_pred CchhHhhhcCccEEEEeccccCCCcee-eEEecCH--HH-HHHHHHHHHhhCCCcchhHHHHHHHHHHH-------HHhH
Q 018243 188 GVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSK--EF-IKKARRLRKTLGGGMRQVGVLCAAALVAL-------QENV 256 (359)
Q Consensus 188 ~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~ 256 (359)
..+-.....++|+++.|.||.+++... +.+-.+. .+ .++++..-.... ++|++..+.+....+- +...
T Consensus 213 ~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~-STSPsY~l~ASlD~Ar~~~~~~G~~l~ 291 (557)
T COG1982 213 MLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQ-STSPSYPLMASLDVARMQEGNAGRELW 291 (557)
T ss_pred cCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHc-cCCchHHHHHHHHHHHHhhhhhhHHHH
Confidence 122222224788999999999976544 5555442 11 122222222222 2333333333332221 1111
Q ss_pred HHHhhhHHHHHHHHHHHHhcCCCceEecCCc--------------------cceEEEEEeccchHHHHHHHHHHHHhcCc
Q 018243 257 LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--------------------ETNIVYFEITEDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 316 (359)
++..++..+.++.+++...+++++.++.++. +..-+.+..+. .|+.+..+.++|+++||
T Consensus 292 ~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~-~Gipg~~v~~~L~e~gi 370 (557)
T COG1982 292 QEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPE-FGIPGAIVAKYLREHGI 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCC-CCCcHHHHHHHHHHcCC
Confidence 2234556677788888888876676654432 11123444443 57899999999999999
Q ss_pred eeccCCCcEEEEEeCCC--CCHHHHHHHHHHHH
Q 018243 317 LVMPESSTRVRIVVHHQ--ISANDVHYTLSCFQ 347 (359)
Q Consensus 317 ~~~~~~~~~lRi~~~~~--~~~~~i~~~~~~l~ 347 (359)
.....+...+-+.+++. ....+++.+++..+
T Consensus 371 i~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 371 IPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred eeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence 99777766655555433 34445555555444
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=156.39 Aligned_cols=274 Identities=16% Similarity=0.168 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhc--CCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 40 AFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETR--GSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 40 ~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~--g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..++++.++++.|.+.. .++.++|.+...++.+...++ +++|++++..|++..... ..++..|++++.++.+.+.
T Consensus 123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d~ 202 (954)
T PRK05367 123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKAL 202 (954)
T ss_pred HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccCC
Confidence 35677889999999854 788888888887777765444 389999999998766310 1245678898888754311
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
+ + .++.++++ +.++ .+|.+.+ +++|+++|+++|+++++|..+..... ..+..++
T Consensus 203 --~--------~--------~~~~~vlv-q~p~-~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~---l~~pge~ 256 (954)
T PRK05367 203 --D--------H--------DDVFGVLL-QYPG-TSGEVRD---YTALIAAAHARGALVAVAADLLALTL---LTPPGEM 256 (954)
T ss_pred --C--------c--------ccEEEEEE-ecCC-CCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC---CCChhhc
Confidence 1 2 35556655 4454 6899876 89999999999999999985422222 2233444
Q ss_pred hcCccEEEEecccc-----CCCceeeEEecCHHHHHHHHH-HHH----hhC-------------------CCcch-hHHH
Q 018243 195 VQAADSASVCLSKG-----LGAPVGSVIVGSKEFIKKARR-LRK----TLG-------------------GGMRQ-VGVL 244 (359)
Q Consensus 195 ~~~~d~~~~s~~K~-----~g~~~gg~~~~~~~~~~~~~~-~~~----~~~-------------------~~~~~-~~~~ 244 (359)
++|+++.+.+|| ||+|..|++..++++.+.+.. +.. ..+ .+... ....
T Consensus 257 --GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qa 334 (954)
T PRK05367 257 --GADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQV 334 (954)
T ss_pred --CCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHH
Confidence 899999999999 677766999999887766421 000 000 00000 0111
Q ss_pred HHHHHHH-----H-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCcee
Q 018243 245 CAAALVA-----L-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 245 ~~~~~~~-----l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
..+...+ + +.++++..++...++.++++.|++. |+++..+ .....+.+.++. +..++.++|.++||.+
T Consensus 335 L~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~-~~f~~~~~~~~~----~~~~i~~~l~~~gi~~ 408 (954)
T PRK05367 335 LLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHD-SFFDTLTVEVGG----DAAAVLARALAAGINL 408 (954)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC-CCCCeEEEeCCC----CHHHHHHHHHHCCcee
Confidence 1111111 1 3455556777888999999999885 8887433 233345555432 6789999999999999
Q ss_pred ccCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 319 MPESSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 319 ~~~~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.....+.+|++++...+++|++.+++.|.
T Consensus 409 ~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 409 RRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 65556789999999999999999999997
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-17 Score=137.30 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHhCCCCeE-EcCCchHHHHHHHHHh---hhhc----CCeEEecCCCcceeeccccccccCCccceeee
Q 018243 38 PTAFRLETEMAKVMGKEAGL-FVPSGTMGNLISVLVH---CETR----GSEVILGDNSHIHIYENGGISTIGGVHPRTVK 109 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~~-~~~~gt~a~~~~l~~~---~~~~----g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 109 (359)
+...+|++.+++..|.+.+. .-.+|+++=...++.+ ...+ .+.|++|+.+|...- +.+.+.|.+++.|+
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP---ASAam~G~~VV~V~ 185 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP---ASAAMAGFKVVVVK 185 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh---hhHhhcCceEEEEe
Confidence 34578888888888998874 4556766544444443 3223 346999999998866 34889999999999
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
.+++|.+|+++|++++. .+++++++.+ +| -.|.. .+++.+|+++.+++|..+..|+|- +.+.. |.
T Consensus 186 ~~~~G~VDlddLk~k~~--------~~~AalMiTn-Ps-T~GvF--E~~I~ei~~ivH~~Gg~vY~DGAN-lNA~v--G~ 250 (496)
T COG1003 186 CDENGNVDLDDLRAKAE--------DNLAALMITN-PS-TLGVF--EEDIREICEIVHEAGGQVYYDGAN-LNAIV--GL 250 (496)
T ss_pred cCCCCCccHHHHHHHhc--------cceeEEEecc-Cc-ccccc--hhhHHHHHHHHHHcCCEEEecCcc-hhhhh--cc
Confidence 99999999999999999 7899999944 44 25676 578999999999999999999984 32322 32
Q ss_pred h-hHhhhcCccEEEEeccccCCCce------eeEEecCHHHHHHHHHH------HH-h--hCCC--------cchhHHHH
Q 018243 190 P-VRRLVQAADSASVCLSKGLGAPV------GSVIVGSKEFIKKARRL------RK-T--LGGG--------MRQVGVLC 245 (359)
Q Consensus 190 ~-~~~~~~~~d~~~~s~~K~~g~~~------gg~~~~~~~~~~~~~~~------~~-~--~~~~--------~~~~~~~~ 245 (359)
. ..+ .++|++-+.+||+|+.|- .|-+..++++...+..- .. . .... +..+..+.
T Consensus 251 ~rPGd--~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il 328 (496)
T COG1003 251 ARPGD--MGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASIL 328 (496)
T ss_pred ccccc--cccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHH
Confidence 2 223 389999999999996542 15566666655543320 00 0 0000 00111111
Q ss_pred HHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc-ceE-EEEEec---cchHHHHHHHHHHHHhcCc
Q 018243 246 AAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE-TNI-VYFEIT---EDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 246 ~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~l~~~gi 316 (359)
..++.-+ .+++++.-+...-+++|+.+.|+.. +++...+.. ... +.+... ...+++..+++++|.++|+
T Consensus 329 ~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~Gf 406 (496)
T COG1003 329 PIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGF 406 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCC
Confidence 2222222 3444445555667899999999873 444222211 222 222222 2245789999999999999
Q ss_pred ee----ccC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 317 LV----MPE-SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 317 ~~----~~~-~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.. +|. -.+.+-|=++...+++++|++++++.++.++..+
T Consensus 407 HaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 407 HAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred CCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 76 231 3566888888888999999999999999888764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-16 Score=141.76 Aligned_cols=261 Identities=18% Similarity=0.188 Sum_probs=163.1
Q ss_pred CCccCCChHHHHHHHH----HHHHhCCCC--eEEcCCchHHHHHHHHHhhhhc--------C------------------
Q 018243 31 DDVLMHDPTAFRLETE----MAKVMGKEA--GLFVPSGTMGNLISVLVHCETR--------G------------------ 78 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~----la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~--------g------------------ 78 (359)
...+..+|....+|++ +++++|.+. +.++++||+|++.++..++... .
T Consensus 112 ~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~ 191 (608)
T TIGR03811 112 NVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPT 191 (608)
T ss_pred CCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccc
Confidence 3345556666666555 667778764 5899999999999998876421 0
Q ss_pred -------------------------------CeEEecCCCcceeeccccccccCCc---cceeeecCCCCCCCHHHHHHH
Q 018243 79 -------------------------------SEVILGDNSHIHIYENGGISTIGGV---HPRTVKNNQDGTMDIDLIEAA 124 (359)
Q Consensus 79 -------------------------------~~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~ 124 (359)
.+++++...|++..+ + +...|+ .++.|+.++++++|++.|++.
T Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~K-A--a~ilGlG~~~vv~VpvD~~~rmd~~~L~~~ 268 (608)
T TIGR03811 192 KEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLK-A--ADIIGIGLDQVIPVPVDSNYRMDINELEKI 268 (608)
T ss_pred ccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHH-H--HHHcCCCcccEEEeecCCCCcCCHHHHHHH
Confidence 057888888999887 3 555555 588899999999999999999
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCc--EEEEecccccch--hhhcC----c-------
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL--KLHIDGARIFNA--AVALG----V------- 189 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~--~li~D~a~~~~~--~~~~~----~------- 189 (359)
|++..+. ..+.+.++.+...+.+|.+=|.+++.+|++.++++|+ ++|||+|++... ..... .
T Consensus 269 I~~~~~~---g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~ 345 (608)
T TIGR03811 269 IRKLAAE---KTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQE 345 (608)
T ss_pred HHHHHhc---CCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhc
Confidence 9742211 2233333446777788887664444444443478898 699999964322 11000 0
Q ss_pred -----------------hhH-h--hhcCccEEEEeccccCCCcee-e-EEecCHHHHHHHHHHHHhh-------------
Q 018243 190 -----------------PVR-R--LVQAADSASVCLSKGLGAPVG-S-VIVGSKEFIKKARRLRKTL------------- 234 (359)
Q Consensus 190 -----------------~~~-~--~~~~~d~~~~s~~K~~g~~~g-g-~~~~~~~~~~~~~~~~~~~------------- 234 (359)
... . -...+|.+++.+||++..|.+ | +++.++++.+.+.....+.
T Consensus 346 ~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~ 425 (608)
T TIGR03811 346 VHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGA 425 (608)
T ss_pred ccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccc
Confidence 000 0 125789999999999988876 5 5555666544433211111
Q ss_pred -CCCcchhHHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhcC------CCceEe-cCCccceEEEEEec
Q 018243 235 -GGGMRQVGVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQL------KGLRVD-VDAVETNIVYFEIT 297 (359)
Q Consensus 235 -~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~~------~g~~~~-~~~~~~~~~~~~~~ 297 (359)
+...+.++..++..+.++ .+...+.+++..+.++++.+.|++. +.+++. ..++..+++.|++.
T Consensus 426 ~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~ 502 (608)
T TIGR03811 426 YILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFN 502 (608)
T ss_pred cceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEe
Confidence 111122232233333333 2345568888889999999999884 456651 23457788887765
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=151.71 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=194.8
Q ss_pred hHHHHHHHHHcCCCCCCccCCC-----h----HHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcC--CeEE
Q 018243 16 PTEAMRAAMASAEVDDDVLMHD-----P----TAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRG--SEVI 82 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~~~~~~~-----~----~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g--~~vl 82 (359)
.++.+++.+.+.......|++. + ...++++.+++++|.+. ..++.++|.+...++.+....+| ++|+
T Consensus 117 ~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~Vl 196 (993)
T PLN02414 117 VPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFL 196 (993)
T ss_pred CCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEE
Confidence 3356657777644322233321 2 24677888999999974 57888888888887777654433 6799
Q ss_pred ecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 83 LGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
+++..|+...... ..++..|++++.++.+. .+ ... ..+..+++ +.++ .+|.+.| +++
T Consensus 197 Vs~~~hP~~~~v~~t~a~~~GieV~~v~~~~-----~~----~~~--------~~v~~vlv-q~P~-~~G~v~d---v~~ 254 (993)
T PLN02414 197 IASNCHPQTIDVCQTRADGLGLEVVVADEKD-----FD----YSS--------GDVCGVLV-QYPA-TDGEVLD---YAE 254 (993)
T ss_pred EcCccCHhHHHHHHHhhhhcCCEEEEecchh-----hc----ccc--------CceEEEEE-ecCC-CCeEEcC---HHH
Confidence 9999998865311 12445788888886531 11 112 23445554 5454 5799876 899
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccC-----CCceeeEEecCHHHHHHHHH-HHHh--
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL-----GAPVGSVIVGSKEFIKKARR-LRKT-- 233 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~-----g~~~gg~~~~~~~~~~~~~~-~~~~-- 233 (359)
|.++|+++|+++++ .++..+.... .+..++ ++|+++.+.+||. |+|..|+++.++++.+.+.. +...
T Consensus 255 I~~~ah~~GaL~iV-aad~lal~~l--~~pge~--GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~ 329 (993)
T PLN02414 255 FVKNAHANGVKVVM-ATDLLALTML--KPPGEW--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSV 329 (993)
T ss_pred HHHHHHHcCCEEEE-EECHHHhcCC--CCHhhc--cCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCccc
Confidence 99999999999999 6654433321 124444 8999999999997 44444899998887554321 0000
Q ss_pred --h-------------------CCCcchh-HHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC
Q 018243 234 --L-------------------GGGMRQV-GVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD 285 (359)
Q Consensus 234 --~-------------------~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 285 (359)
. ..+.... .+...+++.+. +.+.++..++..+++.++++.|++. |+++..+
T Consensus 330 d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~ 408 (993)
T PLN02414 330 DSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSL 408 (993)
T ss_pred CCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CCccCCC
Confidence 0 0001000 01111111111 2445556677888999999999886 8887443
Q ss_pred CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 286 AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
.....+.+.++ +..++.++|.++||.+.......+|+|++..++++|++.++++|..
T Consensus 409 -~~f~~vt~~~~-----~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 409 -PFFDTVKVKCS-----DADAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred -CCcCeEEEecC-----CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 33445556654 3478999999999988666567899999999999999999999963
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-16 Score=131.87 Aligned_cols=316 Identities=14% Similarity=0.118 Sum_probs=196.0
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC-----CCcc-------CCChHHHHHHHHHHHHhCCCC---e-EEcCCchHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD-----DDVL-------MHDPTAFRLETEMAKVMGKEA---G-LFVPSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~-----~~~~-------~~~~~~~~l~~~la~~~~~~~---~-~~~~~gt~a~ 66 (359)
.++++|..+....| ++|++.+.+...+ .... .......++++.++++++.+. . ++..|||.++
T Consensus 3 ~~~~nF~aGPa~lp-~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ 81 (364)
T PRK12462 3 RNQLNFSGGPGALP-DTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQF 81 (364)
T ss_pred cccceecCCCcCCC-HHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHH
Confidence 35677777766665 4455554432211 1111 113445788888999999853 3 4445688888
Q ss_pred HHHHHHhhhhcCCeEE--ecCCCcceeeccccccccCCccceeeec--C--CCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 67 LISVLVHCETRGSEVI--LGDNSHIHIYENGGISTIGGVHPRTVKN--N--QDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl--~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
.++...++. +|++++ +....|...+. ..++..| ++..+.. . ....++++++ .++ ++.+.|
T Consensus 82 ea~~~Nll~-~g~~~~~~~~tG~fg~r~~--~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~--------~d~~~v 147 (364)
T PRK12462 82 SMIPMNFSR-PGAAAPEYVTTGYWSRKAI--GEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWD--------ARAPFR 147 (364)
T ss_pred HHHHHHcCC-CCCcEEEEEeCCHHHHHHH--HHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccC--------CCCcEE
Confidence 888888884 888554 55544333332 4455566 4444421 1 1123455554 122 456677
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEec
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVG 219 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~ 219 (359)
++ +.+++.||+.++ ++.+.++.++|+|.+..++... ..+. ..|+++.|..|++| |.| ++++.
T Consensus 148 ~~-t~NETstGv~~~--------~~~~~~~~llvvD~sS~~~s~p---id~~----~~dvi~agsQKnlg-P~Gltvviv 210 (364)
T PRK12462 148 HY-VSNETVEGLQFP--------DAAGLPDSPLIADMSSDFMSRP---FDVE----AYGMVYAHAQKNLG-PAGVTVAII 210 (364)
T ss_pred EE-ccCCCCceEecC--------cccccCCCeEEEEcCchhhCCC---CChH----HccEEEeeccccCC-CCceEEEEE
Confidence 77 567778999876 1222368999999986554332 2222 33999999999999 777 88888
Q ss_pred CHHHHHHHHHHHH-----------hhCCCcc-hhHHHHHH-HHHHH-HH--hHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 220 SKEFIKKARRLRK-----------TLGGGMR-QVGVLCAA-ALVAL-QE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 220 ~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~-~~~~l-~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
+++.+++...... ....+++ ...+.... .+..+ ++ +++.+.++..++++.+++.+.+.+++-..
T Consensus 211 s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~ 290 (364)
T PRK12462 211 RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDC 290 (364)
T ss_pred CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 8888776432111 1112221 11111111 12233 34 67767788899999999999998656431
Q ss_pred --cCCccce-EEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 284 --VDAVETN-IVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 284 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+...+. .+.|++.++ ....+|.+.++++|+....|. -+++|+++...++.++++.+++.++++-++
T Consensus 291 ~~~~~~RS~mnv~f~~~~~--~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 291 HAHRAARSTMNVAFRFRQP--RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred CCChhhcCcceEEEEcCCH--HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 1222222 355666652 467789999999999885553 356999999999999999999998876554
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-15 Score=123.57 Aligned_cols=274 Identities=20% Similarity=0.231 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCCC------CCccCC-ChHHHHHHHHHHHHhCCCCeEE---cCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 18 EAMRAAMASAEVD------DDVLMH-DPTAFRLETEMAKVMGKEAGLF---VPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 18 ~~~~~a~~~~~~~------~~~~~~-~~~~~~l~~~la~~~~~~~~~~---~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
..+++|+.+.-.. ...|++ +.+.+.+++..|+.|+.+.+++ +.|||+|+..+|..++ +|||+++.....
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG~ 105 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITGK 105 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCCC
Confidence 6788888764432 234665 4577999999999999998744 6799999999999999 599998866655
Q ss_pred cceeec--------cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 88 HIHIYE--------NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 88 ~~~~~~--------~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
-|.+.. .....+-.|+....++..+++.+|.+.+++.++ +++++|++--+.....-..++.+++
T Consensus 106 PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~--------~~tk~v~IQRSrGYs~R~sl~i~~I 177 (403)
T PF06838_consen 106 PYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK--------PNTKMVLIQRSRGYSWRPSLTIEEI 177 (403)
T ss_dssp --CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH--------TTEEEEEEE-S-TTSSS----HHHH
T ss_pred chhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc--------cCceEEEEecCCCCCCCCCCCHHHH
Confidence 444432 002244567888888999999999999999999 8999999977766555567888999
Q ss_pred HHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHHHh-
Q 018243 160 DSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLRKT- 233 (359)
Q Consensus 160 ~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~~~- 233 (359)
++++++.|+. +++++||.+ ||.+... ..+...++|++..|+-|..|+ |.||++++++++++++...-..
T Consensus 178 ~~~i~~vk~~~p~~iifVDNC--YGEFvE~---~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaP 252 (403)
T PF06838_consen 178 KEIIKFVKEINPDVIIFVDNC--YGEFVET---QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAP 252 (403)
T ss_dssp HHHHHHHHHH-TTSEEEEE-T--TTTTTSS---S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-T
T ss_pred HHHHHHHHhhCCCeEEEEeCC--cceeccc---cCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCC
Confidence 9999999876 789999999 5555422 233334999999999999976 5679999999999986532222
Q ss_pred -----hCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC--cc-ceEEEEEeccchHHHHH
Q 018243 234 -----LGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--VE-TNIVYFEITEDSKLYAA 305 (359)
Q Consensus 234 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 305 (359)
.|.+.... -....++-- -.+......+-+......++++ |+++.+.. .. .-+..+.+..+ ....
T Consensus 253 GiG~e~G~t~~~~----R~~~QGlFl-AP~vV~eAlKgaif~A~~fe~l-G~~v~P~~~~~R~DiIQai~l~~~--e~l~ 324 (403)
T PF06838_consen 253 GIGKEVGATLGTN----RLMFQGLFL-APHVVGEALKGAIFAAALFEKL-GFEVSPKPDDPRSDIIQAIELGSP--EKLI 324 (403)
T ss_dssp TTGGGSS--TTTH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT-T-EEES-TTS--SSS-EEEE-SSH--HHHH
T ss_pred ccccccccCcchH----HHHHhHHhh-chHHHHHHHHHHHHHHHHHHHc-CCcCCCCCCCCCCceEEEEECCCH--HHHH
Confidence 22222111 111111100 0123334445555666677778 99985432 12 23456777653 3566
Q ss_pred HHHHHHHh
Q 018243 306 CLLKKLEE 313 (359)
Q Consensus 306 ~~~~~l~~ 313 (359)
.|++...+
T Consensus 325 ~FC~~iQ~ 332 (403)
T PF06838_consen 325 AFCQGIQA 332 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777755
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=124.29 Aligned_cols=287 Identities=19% Similarity=0.192 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhCCCC-eEEcCCchHHHHHHHH-Hhh-hhcCCeEEecCCCcceeeccc--cccccCCccceeeecCCCCC
Q 018243 41 FRLETEMAKVMGKEA-GLFVPSGTMGNLISVL-VHC-ETRGSEVILGDNSHIHIYENG--GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 41 ~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~-~~~-~~~g~~vl~~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~ 115 (359)
..+-..++.++|... .+.+++++..++.-+. +.+ .++|+.||+++..-+++-... ..+.+.+ +..+-.+.
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~-----~~~~~~~~ 153 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLG-----IGYDLEGV 153 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhc-----ccccceee
Confidence 556667788888865 3777777776665444 433 245788998887655543200 1122222 12223344
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+.++++++.++ .++.+|++.+.. .-||+.++ +.+|.++++++|++++.|=+|+.|..+. .+. .
T Consensus 154 ~~P~~~~~~~~--------dd~AvV~L~~V~-y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp~---~Lh--~ 216 (407)
T COG3844 154 IAPRALEEAIT--------DDVAVVLLSHVN-YKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVPV---DLH--A 216 (407)
T ss_pred eChHHHHHhhc--------cceEEEEecccc-ccccceee---HHHHHHHHHhcCceEEeehhcccCCcce---eec--c
Confidence 57889999999 789999995554 48999988 8999999999999999999998877641 122 2
Q ss_pred cCccEEEEeccccC-CCcee-eEEecCHHHHHHHH-HHHHhhCC-------------------CcchhHHHHH-HHHHHH
Q 018243 196 QAADSASVCLSKGL-GAPVG-SVIVGSKEFIKKAR-RLRKTLGG-------------------GMRQVGVLCA-AALVAL 252 (359)
Q Consensus 196 ~~~d~~~~s~~K~~-g~~~g-g~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~~~~-~~~~~l 252 (359)
.++|+-+.+.+|++ |+|++ ++++..++..+... .+...+|. .....+++.. +...+|
T Consensus 217 ~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aL 296 (407)
T COG3844 217 AGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGAL 296 (407)
T ss_pred cCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhh
Confidence 48999999999999 44555 56665444333311 11111110 0111223333 334444
Q ss_pred HHh----HHHHhhhHHHHHHHHHHHHhcC-C--CceEecC---CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC
Q 018243 253 QEN----VLVMLDGDHKKAKLLAEGLNQL-K--GLRVDVD---AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES 322 (359)
Q Consensus 253 ~~~----~~~~~~~~~~~~~~l~~~l~~~-~--g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 322 (359)
+-+ +.+.+++.....+++.+.++.. + ++++..| ...+..+.+..+ .+.++.+.|.++||+.--..
T Consensus 297 Difa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-----~~~~V~qaLi~rGVigD~R~ 371 (407)
T COG3844 297 DIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-----HGYQVMQALIDRGVIGDFRE 371 (407)
T ss_pred hhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-----cHHHHHHHHHHcCccccccC
Confidence 322 2346677778888888888874 2 5666544 245667777765 57799999999999987777
Q ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHH
Q 018243 323 STRVRIVVH-HQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 323 ~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.+|+.++ .+++.+|+-..++.|.+++++..
T Consensus 372 P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 372 PDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred CCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence 889999864 46788999999999999998764
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=137.64 Aligned_cols=259 Identities=20% Similarity=0.210 Sum_probs=159.2
Q ss_pred ccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHh--CCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVM--GKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~--~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
+++||.+. +....+|.+.+++.+....... ...++...++.+.+.+.+ +.+...+++||++|+..+++.+
T Consensus 17 ~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla 96 (339)
T PF00202_consen 17 EYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLA 96 (339)
T ss_dssp EEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHh
Confidence 56888765 4445558888888774432221 223567789999999999 4455689999999999999998
Q ss_pred h------hhcC-CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHH----------HHHH
Q 018243 74 C------ETRG-SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDL----------IEAA 124 (359)
Q Consensus 74 ~------~~~g-~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~----------l~~~ 124 (359)
. ..++ .+|+..+.+|..... ++ ....+ ..+..+|.+ +... +++.
T Consensus 97 ~~~~~~~~~~~r~~il~~~~~yHG~t~-~~-~s~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~ 169 (339)
T PF00202_consen 97 RQYHNKRAYTGRRKILAFEGSYHGRTL-GA-LSLTGNPPYRKGFGPLYPGVVFVPFP-----DPAADEEEQACLNALEEL 169 (339)
T ss_dssp HHHHHHTHHHTTTEEEEETTTB-TSSH-HH-HHHSSSTHHHTTTCSSSTTEEEEETT-----CHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccCCceEEEeeeeeeccCc-cc-ccccCCccccccccccccccccccCC-----ccchhhhHHHHHHHHHHH
Confidence 8 4333 456655554433221 01 11111 112333433 3333 3322
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEe
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVC 204 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s 204 (359)
+.+ ...+++.+|++++...+.+-..++.+++++|+++|++||+++|+||++..............+...+|+++++
T Consensus 170 ~~~----~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g 245 (339)
T PF00202_consen 170 IAA----LNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG 245 (339)
T ss_dssp HHH----HHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE
T ss_pred HHh----hcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccc
Confidence 221 1116889999999888543356677999999999999999999999975432321112223333467887776
Q ss_pred ccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHH-HhhhHHHHHHHHHHHHhcC
Q 018243 205 LSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLV-MLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 205 ~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~ 277 (359)
|.+++... +.++.++++.+.+... ..++++...++.++++...++...++ ..++..++.+++.+.|+++
T Consensus 246 --K~l~gG~p~sav~~~~~i~~~~~~~--~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 246 --KGLGGGLPISAVLGSEEIMEAFQPG--SHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL 316 (339)
T ss_dssp --GGGGTTSSEEEEEEEHHHHTTSCTT--SSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --cchhhhhhcccccccchhhcccccc--ccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 77744322 5577788887765322 25666666778888888888655542 4556666777777777654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=124.28 Aligned_cols=315 Identities=19% Similarity=0.163 Sum_probs=201.9
Q ss_pred HHHHHHHHcCCCC--------CCccCCChHHHHHHHH----HHHHhCCCCe-----EEcCCchHHHHHHHHHhhhhcCCe
Q 018243 18 EAMRAAMASAEVD--------DDVLMHDPTAFRLETE----MAKVMGKEAG-----LFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 18 ~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~----la~~~~~~~~-----~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
.++.+++.....+ ..+|+..+.++++|.. ..+.|+.+.. +..-||+-|++.+..+++ +|+++
T Consensus 54 ~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall-~Ph~R 132 (477)
T KOG2467|consen 54 RAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALL-KPHER 132 (477)
T ss_pred HHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhc-CCCCe
Confidence 5555555443322 3467777877766544 4456887742 677899999999999999 59999
Q ss_pred EE---ecCCCcceeeccccccccCCc----cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 81 VI---LGDNSHIHIYENGGISTIGGV----HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 81 vl---~~~~~~~~~~~~~~~~~~~g~----~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
|+ +|+..|.+.-.....-+.... +..++..+ ..|-+|.+.|++.... -++++|+. ..... -.
T Consensus 133 iMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~-------frPk~iia-G~SaY--~R 202 (477)
T KOG2467|consen 133 IMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL-------FRPKLIIA-GTSAY--SR 202 (477)
T ss_pred eeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh-------cCCcEEEe-ccccc--hh
Confidence 88 455555433110000111111 11122233 5688999999998875 57788876 32321 13
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHH---------
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEF--------- 223 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~--------- 223 (359)
. -|..+++++|++.|+++++|-||..|... .+.-..++ ..+|+++.+.||.+-+|.||+++.++.+
T Consensus 203 ~---~DYaR~R~Iad~~gA~Lm~DMAHISgLVA-A~vipsPF-ey~DiVTTTTHKsLRGPRg~mIFyRkGvk~~~~k~g~ 277 (477)
T KOG2467|consen 203 L---IDYARFRKIADKVGAYLMADMAHISGLVA-AGVIPSPF-EYCDIVTTTTHKSLRGPRGAMIFYRKGVKSIKPKQGK 277 (477)
T ss_pred h---ccHHHHHHHHHhcCceeehhhhhHHHHHh-cccCCCcc-cccceeeccccccccCCcceeEEEeccCCcCCCCCCC
Confidence 3 35899999999999999999999776554 34433444 4899999999999988999988865421
Q ss_pred ------HHHHHHH--HHhh-CCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 224 ------IKKARRL--RKTL-GGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 224 ------~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
.++++.. .... |+....-..++.+...+. .++.+ ..++..+|++.|.+.|.++ |+++...+.....+.
T Consensus 278 ~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~-Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvL 355 (477)
T KOG2467|consen 278 EILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKE-YQKQVLKNAKALASALISR-GYKLVTGGTDNHLVL 355 (477)
T ss_pred cceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHHHHHc-CceEecCCccceEEE
Confidence 1222110 0011 111111122222222222 34333 7778889999999999999 999987777777788
Q ss_pred EEeccchHHHHHHHHHHHHhcCcee----ccC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLV----MPE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+.+.. .+++...+-+-|...+|.+ +|+ .++++|+.. +-+..++|++++.+.|.++++
T Consensus 356 vDLr~-~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 356 VDLRP-KGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred Eeccc-cCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 88876 5666666655556666655 444 456799954 334568999999998888765
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=126.20 Aligned_cols=304 Identities=18% Similarity=0.260 Sum_probs=186.9
Q ss_pred HHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhh--cC----------C-eEEecCCCcceeeccccccccCCcc
Q 018243 41 FRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCET--RG----------S-EVILGDNSHIHIYENGGISTIGGVH 104 (359)
Q Consensus 41 ~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~--~g----------~-~vl~~~~~~~~~~~~~~~~~~~g~~ 104 (359)
.++-..+.+..|.+. +++.++|+-++..++..+..+ |+ + -+..++-+|||..+.+++..+....
T Consensus 144 ~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~ 223 (510)
T KOG0629|consen 144 EEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDH 223 (510)
T ss_pred HHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCce
Confidence 444455666677764 599999999999999988542 11 1 2447888999988844444444567
Q ss_pred ceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchh
Q 018243 105 PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184 (359)
Q Consensus 105 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 184 (359)
++.|+.++.|.+++++|++.|-+..+++. +-.++-.+...+-.|. .+++..|+++|++|+.|++||.|.+.|..
T Consensus 224 c~~v~t~e~Gkm~~~dLe~kile~k~kg~---~Pf~vnaTaGTTV~GA---FDdL~~iadiC~k~~lWmHvDAAwGGglL 297 (510)
T KOG0629|consen 224 CIKVKTDERGKMIPDDLEKKILEAKAKGG---VPFFVNATAGTTVLGA---FDDLNGIADICEKHKLWMHVDAAWGGGLL 297 (510)
T ss_pred eEEecccccCccchHHHHHHHHHHHhcCC---CCeEEEecCCceeeec---cCcHHHHHHHHHhcCEEEEeecccccccc
Confidence 88889999999999999999986433221 1233322333333333 36799999999999999999999533332
Q ss_pred h-hcCchhHhhhcCccEEEEeccccCCCcee-e-EEecCHHHHHHHHHHHHhh--------------CCCcch----hHH
Q 018243 185 V-ALGVPVRRLVQAADSASVCLSKGLGAPVG-S-VIVGSKEFIKKARRLRKTL--------------GGGMRQ----VGV 243 (359)
Q Consensus 185 ~-~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g-~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~~~ 243 (359)
- ...+........++.++.+.||++|.|.. + +++..+.+.++..+....+ |.-..+ ..+
T Consensus 298 mS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~ 377 (510)
T KOG0629|consen 298 MSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDV 377 (510)
T ss_pred cChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccH
Confidence 2 11222222235788999999999999877 3 3444555666655433311 000001 111
Q ss_pred H-HHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC--CccceEEEEEeccc-----h--H------HHHHH
Q 018243 244 L-CAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AVETNIVYFEITED-----S--K------LYAAC 306 (359)
Q Consensus 244 ~-~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~-----~--~------~~~~~ 306 (359)
. .+..+.+- ....++.+++..+++++|.+.+++.+++..... +...++.+..++.. . . .-+-.
T Consensus 378 FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPk 457 (510)
T KOG0629|consen 378 FKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPK 457 (510)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcH
Confidence 1 22222222 133455888999999999999999988765332 22344433333320 0 0 01224
Q ss_pred HHHHHHhcCcee---ccC--CCcEEEEEe-CCCCCHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV---MPE--SSTRVRIVV-HHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 307 ~~~~l~~~gi~~---~~~--~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~ 350 (359)
+...+.++|-.. .|. .++++|+.+ ++..+.+|++.+++.|.++=
T Consensus 458 IK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 458 IKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred HHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 555666666544 232 345688754 33578999999999887653
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-14 Score=119.42 Aligned_cols=323 Identities=16% Similarity=0.186 Sum_probs=204.5
Q ss_pred HHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC----CC-----------CeEEcCCchHHHHHHHHHhhhh----
Q 018243 18 EAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG----KE-----------AGLFVPSGTMGNLISVLVHCET---- 76 (359)
Q Consensus 18 ~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~----~~-----------~~~~~~~gt~a~~~~l~~~~~~---- 76 (359)
|.+..-|.....+ ...+..+|...+||.-+.+|++ .+ .+++..+++++.+.++.++..+
T Consensus 87 ~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~ 166 (511)
T KOG0628|consen 87 PSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEE 166 (511)
T ss_pred HHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHH
Confidence 5555555554333 2334567888899877766653 22 2388899999999999988531
Q ss_pred --cCC------------eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 77 --RGS------------EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 77 --~g~------------~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
.+. .+.+++.+|.+.-+ + +...+++.+.++.+.++.++.+.|++++++..+.+ -+-.+++
T Consensus 167 ~k~~~p~~~e~~~~~~lV~Y~SDqahssvek-a--~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arG---lIPf~v~ 240 (511)
T KOG0628|consen 167 IKSRPPELHESSVLARLVAYCSDQAHSSVEK-A--CLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARG---LIPFFVC 240 (511)
T ss_pred hhcCCCcccchhhhhhheEEecCcccchHHH-h--HhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCC---CccEEEE
Confidence 111 25688889888665 4 67788888888888899999999999998643332 2334554
Q ss_pred eccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCC-----cee
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGA-----PVG 214 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~-----~~g 214 (359)
.+... | .....|++.+|..+|+++|+|+++|.||+..++... ....+ ...+|.+-+..|||+.. +.+
T Consensus 241 at~GT--T-~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCp--E~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lW 315 (511)
T KOG0628|consen 241 ATLGT--T-SSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICP--EFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLW 315 (511)
T ss_pred EeecC--c-cccccccHHHhcchhhhcCEEEEeehhhccccccCH--HHHHHhhcchhhccccCChhheeEEeeeeecce
Confidence 33332 3 334567899999999999999999999865444322 12222 24678888899999843 222
Q ss_pred ---e-----EEecCHHHHHHHHHHH--------HhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCC
Q 018243 215 ---S-----VIVGSKEFIKKARRLR--------KTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLK 278 (359)
Q Consensus 215 ---g-----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 278 (359)
+ +.-.++...+...... -..+-.++..-.....-..+.+...+ ..++..+.++.+.+.+.+-+
T Consensus 316 vkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~-~iR~h~~La~~fe~lv~~d~ 394 (511)
T KOG0628|consen 316 VKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQN-YIREHVRLAKEFETLVRADP 394 (511)
T ss_pred eecCceeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHhhcCC
Confidence 1 1222343333311110 01111111111111111112223222 55566667777777777767
Q ss_pred CceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceecc---CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHH
Q 018243 279 GLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMP---ESSTRVRIVV-HHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~---~~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.|++.. +.....++|++.+. ....+.+.+++ ....|.+++ .+...||+++ ++..+++++++..+.|.+...++
T Consensus 395 ~FE~~~-~~~lgLvcFRlk~~-N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 395 RFEIVN-KRILGLVCFRLKGD-NEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred cceeec-ccccceeEEeecCC-cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 888854 45777788888873 45677888888 555666655 3677899985 55677899999999998888775
Q ss_pred H
Q 018243 354 C 354 (359)
Q Consensus 354 ~ 354 (359)
.
T Consensus 473 ~ 473 (511)
T KOG0628|consen 473 F 473 (511)
T ss_pred H
Confidence 4
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-13 Score=120.31 Aligned_cols=276 Identities=19% Similarity=0.188 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhc--CCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 40 AFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETR--GSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 40 ~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~--g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
.-+++..++++.|.+.. -+..+++.+.++++++....+ +++|+++...|+...... ..+...|++++.++.++++
T Consensus 112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~ 191 (429)
T PF02347_consen 112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG 191 (429)
T ss_dssp HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC
T ss_pred HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC
Confidence 46788889999999853 677778777777766654433 348999999987765300 1355578888888877676
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
..| + +++.+|++.+|. -.|.+-+ +++|.++++++|.++++ .+-.. ... .-.+..++
T Consensus 192 ~~d--------~--------~~~a~v~vq~Pn--~~G~~ed---~~~i~~~~h~~gal~~~-~ad~~-aL~-~l~~Pge~ 247 (429)
T PF02347_consen 192 TTD--------D--------DDTAAVMVQNPN--TFGVFED---IKEIADIAHAAGALVIV-GADPN-ALG-GLKSPGEY 247 (429)
T ss_dssp SB---------S--------TTEEEEEEESS---TTSB--T---HHHHHHHHHHTT-EEEE-CGGCC-GCC-TC--GGGG
T ss_pred Ccc--------c--------cCeEEEEeecCC--CCceEee---HHHHHHHHHHcCCEEEE-ecCHH-HHh-CcCChhhc
Confidence 655 3 789999995555 3688644 99999999999999988 55211 111 11223334
Q ss_pred hcCccEEEEeccccCCCce------eeEEecCHHHHHHHH----------------------------HHHHhhCCCcch
Q 018243 195 VQAADSASVCLSKGLGAPV------GSVIVGSKEFIKKAR----------------------------RLRKTLGGGMRQ 240 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~------gg~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 240 (359)
++|++ ++.+|.||.|. .|++.+++++..++. +.+.+...++.+
T Consensus 248 --GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnq 324 (429)
T PF02347_consen 248 --GADIV-VGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQ 324 (429)
T ss_dssp --T-SEE-EECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-
T ss_pred --CccEE-eeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhH
Confidence 89999 65689997652 278888888666522 111122222222
Q ss_pred hH-HHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 241 VG-VLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 241 ~~-~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
.- ...++....+ ++++.+..++...++.++++.|++..++.+ ..+....++....+. ....++.+++...|+.
T Consensus 325 aL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~-~~~~f~e~v~~~~~~---~~~~~l~~~~~~~gl~ 400 (429)
T PF02347_consen 325 ALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF-DNPFFFEFVVVFSKD---KEVEELLKRGIEGGLN 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS-SSSSBSSEEEEESS----HHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CCCCceeeeeecCCc---HHHHHHHHHHHhcCCC
Confidence 11 1222223233 566666888899999999999999723333 222222223333222 3444577777778876
Q ss_pred eccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 318 VMPESSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 318 ~~~~~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
......+.+-+|+....+++|+|.++++|
T Consensus 401 ~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 401 LRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 65555568999999999999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=130.33 Aligned_cols=274 Identities=17% Similarity=0.154 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhh--hcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 40 AFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCE--TRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 40 ~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~--~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
.-++++.++++.|.+. +-++..+|.+.++++++... +++++|++++..|+...... ..+...|++++.+
T Consensus 111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~------ 184 (939)
T TIGR00461 111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV------ 184 (939)
T ss_pred HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE------
Confidence 3567788999999984 47888888877776666432 23478999999997755210 1135678777777
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|.++|++.+ ++.++++ ..+| -.|.+. ++++|.++++++|.+++++.-.. ....-.+..++
T Consensus 185 --~~~~l~~~~----------~~~~v~~-q~Pn-~~G~ie---d~~~i~~~~h~~gal~~~~ad~~---al~ll~~Pge~ 244 (939)
T TIGR00461 185 --DCSDIKKAV----------DVFGCLL-QYPA-TDGSIL---DYKQLIDALHSHKSLVSVAADLM---ALTLLTPPGHY 244 (939)
T ss_pred --cHHHHhhcC----------CEEEEEE-ECCC-CCeEEe---cHHHHHHHHHHcCCEEEEEechH---HhCCcCCHHHc
Confidence 444444433 3456666 3344 468875 48999999999999999964311 11112233444
Q ss_pred hcCccEEEEeccccCCC------ceeeEEecCHHHHHHHHH--HH--------------------------HhhCCCcch
Q 018243 195 VQAADSASVCLSKGLGA------PVGSVIVGSKEFIKKARR--LR--------------------------KTLGGGMRQ 240 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~------~~gg~~~~~~~~~~~~~~--~~--------------------------~~~~~~~~~ 240 (359)
++|++ ++.+|.||. |..|++.+++++...+.. .. .+...++.+
T Consensus 245 --GaDi~-vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~q 321 (939)
T TIGR00461 245 --GADIV-LGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQ 321 (939)
T ss_pred --CCcEE-eeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHH
Confidence 89998 444454544 444888888887766321 00 011111111
Q ss_pred hHHHHHHH-HHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 241 VGVLCAAA-LVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 241 ~~~~~~~~-~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
.-....++ ...+ .+++++..++...++.+|.+.|++. |+++..+ .....+.++++. .+++++.+.|.++||.
T Consensus 322 aL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~-~fF~~~~v~~~~---~~~~~i~~~~~~~gi~ 396 (939)
T TIGR00461 322 VLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINK-TWFDTLTVKVGN---GISSELLKAAEEFNIN 396 (939)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CccceEEEEeCC---CCHHHHHHHHHHCCCe
Confidence 11111111 1122 4556556777888999999999996 9987543 233334455542 2577899999999999
Q ss_pred eccCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 318 VMPESSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 318 ~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+.....+.++++++..++++|++.+++.+.
T Consensus 397 l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 397 LRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred eeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 876666789999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-14 Score=119.44 Aligned_cols=298 Identities=16% Similarity=0.110 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhCCCCe---EEcCCchHHHHHHHHHhhhhc----C---CeEEecCCCcceeeccccccccCCccceeeec
Q 018243 41 FRLETEMAKVMGKEAG---LFVPSGTMGNLISVLVHCETR----G---SEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 41 ~~l~~~la~~~~~~~~---~~~~~gt~a~~~~l~~~~~~~----g---~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
.++-..++.+|+.+.. ..+++||++++++-....... | ..++.+...|.+..+ .++..++++..++.
T Consensus 123 ~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK---~a~yf~v~l~~V~~ 199 (491)
T KOG1383|consen 123 AECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK---AARYFEVELREVPL 199 (491)
T ss_pred HHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH---HHhhEEEEEEeeec
Confidence 3444447778877643 678889999766666543211 1 236667767665433 36677888888877
Q ss_pred C-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH-cCcEEEEecccccchhhhcC
Q 018243 111 N-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK-HGLKLHIDGARIFNAAVALG 188 (359)
Q Consensus 111 ~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~-~~~~li~D~a~~~~~~~~~~ 188 (359)
+ .++.+|+..+.+.++ ++|.+++. ..++.|+|.+ |++++|.++..+ +++++++|.+.+.+..+..-
T Consensus 200 ~~~~~~~D~~k~~~~i~--------eNti~lv~-~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~ 267 (491)
T KOG1383|consen 200 DEGDYRVDPGKVVRMID--------ENTIMLVG-SLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGY 267 (491)
T ss_pred cccceEecHHHHHHHhc--------cceEEEEE-EcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccc
Confidence 7 678999999999999 78888887 5666799995 558999999988 99999999984332221011
Q ss_pred chhHhhh---cCccEEEEeccccCCCcee-eEEe-cCHHHHHH-HHHHHH-------hhCCCcchhHHHHHHHHHHH---
Q 018243 189 VPVRRLV---QAADSASVCLSKGLGAPVG-SVIV-GSKEFIKK-ARRLRK-------TLGGGMRQVGVLCAAALVAL--- 252 (359)
Q Consensus 189 ~~~~~~~---~~~d~~~~s~~K~~g~~~g-g~~~-~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~l--- 252 (359)
....++. .++..++.+.||+--.|.| +|++ .++++... +.-... +.+.+.+-++...+++++++
T Consensus 268 ~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l 347 (491)
T KOG1383|consen 268 LNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL 347 (491)
T ss_pred cCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh
Confidence 1111221 3445677799997666777 5554 45554322 111111 12222333444555555554
Q ss_pred -HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-CCcEEEEEe
Q 018243 253 -QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-SSTRVRIVV 330 (359)
Q Consensus 253 -~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-~~~~lRi~~ 330 (359)
.++..+..+++.+.+..|++.+++.+++.+...| ...++.+.-. ..+-.++.+.|++.|..+-.. -+..+.+++
T Consensus 348 G~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp-~vs~~~~~s~---~~~i~elsd~l~~~GW~lnalq~P~a~Hi~v 423 (491)
T KOG1383|consen 348 GEEGYRENTQNIVETARKLREGIENIKGIKIVGKP-LVSFILFGSN---DVNIFELSDLLRKKGWILNALQFPAAIHICV 423 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC-cEEEEEccCC---ccchhhhhHHHHhcCcCccccCCCCceEEEE
Confidence 2333347778889999999999999899986442 3333333322 257789999999999988211 122556655
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHhhc
Q 018243 331 HHQISAND-VHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 331 ~~~~~~~~-i~~~~~~l~~~~~~~~~~~ 357 (359)
...+..++ .++++..|+++++++....
T Consensus 424 t~~~~~~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 424 TRVHAREDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred EeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence 43444444 6888999999998886543
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=109.41 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=187.0
Q ss_pred HHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhc--CCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 41 FRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETR--GSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 41 ~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~--g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.++...++++.|.+- +-++-.+|.+.++++++....+ .++++++...|+...... ..++-.|.+++.++.+
T Consensus 123 fefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~---- 198 (450)
T COG0403 123 FEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD---- 198 (450)
T ss_pred HHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc----
Confidence 556677999999884 4778888888888877766433 578999999998775411 1133356666666655
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec-ccccchhhhcCchhHhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG-ARIFNAAVALGVPVRRL 194 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~ 194 (359)
|.+++++. ++ ..+.++++..|. -.|.. .+++.++.+.++++|+++++=. --+.+.. .+..++
T Consensus 199 -d~~~l~~~-~~-------~~~~gv~vQyP~--~~G~~--~~d~~~l~~~~h~~~al~~v~aDplaL~LL----~pPGe~ 261 (450)
T COG0403 199 -DLDDLESA-DD-------GDVFGVLVQYPN--TFGIV--EEDLRALIEAAHSAGALVIVAADPLALGLL----KPPGEF 261 (450)
T ss_pred -hhhhhhhc-cc-------cCeEEEEEecCC--CCCcc--chhHHHHHHHHhhcCCEEEEEechhHhhcc----CCcccc
Confidence 88888887 53 578888885544 35644 3469999999999998877653 1111111 123333
Q ss_pred hcCccEEEEeccc-----cCCCceeeEEecCHHHHHH----------------------------HHHHHHhhCCCcchh
Q 018243 195 VQAADSASVCLSK-----GLGAPVGSVIVGSKEFIKK----------------------------ARRLRKTLGGGMRQV 241 (359)
Q Consensus 195 ~~~~d~~~~s~~K-----~~g~~~gg~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 241 (359)
++|+++.+.+- +||+|-.|++..++++..+ +|+-+.+.+.++.+.
T Consensus 262 --GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQa 339 (450)
T COG0403 262 --GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQA 339 (450)
T ss_pred --CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHH
Confidence 89998876665 2344444778777776544 333333444444333
Q ss_pred HHHHHHHHHH-H--HHhHHHHhhhHHHHHHHHHHHHhcCC-CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 242 GVLCAAALVA-L--QENVLVMLDGDHKKAKLLAEGLNQLK-GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 242 ~~~~~~~~~~-l--~~~~~~~~~~~~~~~~~l~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
-...+++..+ + ..++.++.++..+++.+|++.|++.. |+++... ....-+.++++. .....+.++....|+.
T Consensus 340 LlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~-~fFdt~~v~~~~---~~~~~l~~~~~~~G~~ 415 (450)
T COG0403 340 LLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD-HFFDTFTVRVPE---EVAEALLAAAIAGGIN 415 (450)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc-cceeeEEEecch---hHHHHHHHHHHhcCCc
Confidence 2222222222 2 46666688889999999999999651 5776422 222234455553 2567778888889999
Q ss_pred eccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 318 VMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 318 ~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+.......+-+++....++++++.+++.+...
T Consensus 416 L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 416 LRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred eeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 87777778889999889999999999988754
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-12 Score=105.02 Aligned_cols=300 Identities=18% Similarity=0.183 Sum_probs=187.1
Q ss_pred cCCChHHHHHHHHHHHH-hCCCC---------eEEcCCchHHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCC
Q 018243 34 LMHDPTAFRLETEMAKV-MGKEA---------GLFVPSGTMGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGG 102 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~-~~~~~---------~~~~~~gt~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g 102 (359)
|-+--+.+.++...+++ +|.+. ++.+-|||.|+..+...+.. -....|.+++|++.... .+++..|
T Consensus 70 YLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~---~if~~aG 146 (410)
T KOG1412|consen 70 YLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHH---AIFEKAG 146 (410)
T ss_pred hccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHH---HHHHHcC
Confidence 44444556666665554 34432 27778999999887766532 14556999999966644 4577777
Q ss_pred c-cceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccc
Q 018243 103 V-HPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179 (359)
Q Consensus 103 ~-~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 179 (359)
. ++..++. .++-.+|++.+...|+.. +.-.++++..+.+||||+-.+.|.+..|.++.++.+...+.|-+|
T Consensus 147 f~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A------Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAY 220 (410)
T KOG1412|consen 147 FTTVATYPYWDAENKCVDLEGFLSDLESA------PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAY 220 (410)
T ss_pred CceeeeeeeecCCCceecHHHHHHHHhhC------CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhh
Confidence 3 3333332 244567999999888864 344456665565889999999999999999999999999999986
Q ss_pred ccchhhhcCch---hHhhh-cCccEEEE-eccccCCCc---ee--eEEecCHHHHHHHH-HHHHhhCCCcchhHHHHHHH
Q 018243 180 IFNAAVALGVP---VRRLV-QAADSASV-CLSKGLGAP---VG--SVIVGSKEFIKKAR-RLRKTLGGGMRQVGVLCAAA 248 (359)
Q Consensus 180 ~~~~~~~~~~~---~~~~~-~~~d~~~~-s~~K~~g~~---~g--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 248 (359)
-..+.+..... ...+. .+..+++. |++|.||.- .| .++..++..+..+. ++......+++.++...+..
T Consensus 221 QGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArI 300 (410)
T KOG1412|consen 221 QGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARI 300 (410)
T ss_pred cccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHH
Confidence 54444432222 11222 24446665 999999862 44 45555666655543 22223333444344443333
Q ss_pred HHH-H------HHh---HHHHhhhHHHHHHHHHHHHhcC--CCc-eEecCCccceEEEEEeccchHHHHHHHHHHH-Hhc
Q 018243 249 LVA-L------QEN---VLVMLDGDHKKAKLLAEGLNQL--KGL-RVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEH 314 (359)
Q Consensus 249 ~~~-l------~~~---~~~~~~~~~~~~~~l~~~l~~~--~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 314 (359)
... | +.+ +...-.|+.+++..|++.|..+ ||- .... ..-+. |.+.. .+. .-+++| +++
T Consensus 301 V~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~-~QiGM---FSyTG---Ltp-~qV~~li~~h 372 (410)
T KOG1412|consen 301 VHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHIT-QQIGM---FSYTG---LTP-AQVDHLIENH 372 (410)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH-hhccc---eeecC---CCH-HHHHHHHHhc
Confidence 222 2 112 1224455667788888888776 331 1111 11222 23323 233 445666 889
Q ss_pred CceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 315 GVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 315 gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.|++.+.| ||+++ +++...+++..++|.+.++.+..
T Consensus 373 ~vyLl~~G----RInis-GLN~~NveyVAkAIde~Vr~~~~ 408 (410)
T KOG1412|consen 373 KVYLLSDG----RINIS-GLNMKNVEYVAKAIDETVRAIKS 408 (410)
T ss_pred eEEEecCC----cEeee-ccccccHHHHHHHHHHHHHhhcc
Confidence 99987777 88887 78889999999999999887643
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-13 Score=110.41 Aligned_cols=310 Identities=16% Similarity=0.135 Sum_probs=193.4
Q ss_pred HHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHh-CCCC---------eEEcCCchHHHHHHHHHh--hhhcCCeEEe
Q 018243 18 EAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVM-GKEA---------GLFVPSGTMGNLISVLVH--CETRGSEVIL 83 (359)
Q Consensus 18 ~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~-~~~~---------~~~~~~gt~a~~~~l~~~--~~~~g~~vl~ 83 (359)
|.|++|-.+... -+..|.+-.+..++...-+++. |... .+.+-|||.|+..+...+ . -++..|.+
T Consensus 73 ~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f-~~~~~I~i 151 (427)
T KOG1411|consen 73 PSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARF-YPSRDIYI 151 (427)
T ss_pred HHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhh-ccccceee
Confidence 666666554222 2335666666777777766664 4321 144557877776554443 4 36788999
Q ss_pred cCCCcceeeccccccccCCccceeee--cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVK--NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
|.|++.. +. .+....|..+..++ .+....+|.+.+.+.+.+. +.-..|++..+.+||||+-.+.+.+++
T Consensus 152 p~PTWgN-h~--~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~------p~gs~ilLhaCaHNPTGvDPt~eqw~k 222 (427)
T KOG1411|consen 152 PDPTWGN-HK--NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA------PEGSIILLHACAHNPTGVDPTKEQWEK 222 (427)
T ss_pred cCCcccc-cC--ccccccCcceeeeeeccccccccchHHHHHHHhcC------CCCcEEEeehhhcCCCCCCccHHHHHH
Confidence 9999766 44 45888888776663 3455678988888888765 444577787888999999999999999
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchh---Hhhh-cCccEEEE-eccccCCCc---ee--eEEecCHHHHHHHHH-H
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPV---RRLV-QAADSASV-CLSKGLGAP---VG--SVIVGSKEFIKKARR-L 230 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~-~~~d~~~~-s~~K~~g~~---~g--g~~~~~~~~~~~~~~-~ 230 (359)
|.++.++.+.+-++|-+|...+.+...... .-+. .+.++++. |+.|.+|.- .| .+++.+.+...+... +
T Consensus 223 i~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQl 302 (427)
T KOG1411|consen 223 ISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQL 302 (427)
T ss_pred HHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHH
Confidence 999999999999999986544443222221 1221 35666666 999999862 33 456667666655432 2
Q ss_pred HHhhCCCcchhHHHHHHHHHH------H-H---HhHHHHhhhHHHHHHHHHHHHhcCCCceE----ecCCccceEEEEEe
Q 018243 231 RKTLGGGMRQVGVLCAAALVA------L-Q---ENVLVMLDGDHKKAKLLAEGLNQLKGLRV----DVDAVETNIVYFEI 296 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~------l-~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~----~~~~~~~~~~~~~~ 296 (359)
+....+.++.++...+..... + + ..++...+|+..+++.|.+.|+.. |... .. ..-+.|.+--+
T Consensus 303 k~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~-gs~~~W~hI~-~QIGMF~fTgl 380 (427)
T KOG1411|consen 303 KILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKE-GSPGNWSHIT-KQIGMFCFTGL 380 (427)
T ss_pred HHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcC-CCCccHHHHH-HhhheeeecCC
Confidence 222222222222222222111 1 1 112336667778888888888875 3322 11 12233333223
Q ss_pred ccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+. +-++.| .++.|+....+ ||+.+ +++...++++.++|-.+.+
T Consensus 381 ------~p-eQv~~l~ke~~iYmT~dG----RiS~a-G~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 381 ------NP-EQVDWLTKEYHIYLTKDG----RISMA-GLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred ------CH-HHHHHHHhhheeeeccCc----eEeec-cccccCCcccchhhHhHhc
Confidence 33 444556 88888886555 99988 7888899999888876544
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=111.36 Aligned_cols=218 Identities=24% Similarity=0.226 Sum_probs=144.2
Q ss_pred HHHHHHHHHcCCCCCC--cc--CCChHH---HHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecC----
Q 018243 17 TEAMRAAMASAEVDDD--VL--MHDPTA---FRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD---- 85 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~--~~--~~~~~~---~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~---- 85 (359)
.|++.+++........ -| ..+... ..+.+.++...+.+.+.++++.+.|++.++.++.. +.+++++.
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~--~~EvVis~g~lV 117 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE--GKEVVVSRGELV 117 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhcc--CCeEEEEccccc
Confidence 3777777766443321 11 122333 34445555556667778888888888888888873 44555433
Q ss_pred -CCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 86 -NSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 86 -~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
+.|++.- .+.++.|++++.+.. .......+++.+|. +++++++-.+.+|. |..-. =..+++++
T Consensus 118 ~gg~~~v~---d~~~~aG~~l~EvG~--tn~t~~~d~~~AIn--------e~ta~llkV~s~~~--~f~~~-l~~~~l~~ 181 (395)
T COG1921 118 EGGAFRVP---DIIRLAGAKLVEVGT--TNRTHLKDYELAIN--------ENTALLLKVHSSNY--GFTGM-LSEEELVE 181 (395)
T ss_pred cCCCCChh---HHHHHcCCEEEEecc--cCcCCHHHHHHHhc--------cCCeeEEEEeeccc--ccccc-ccHHHHHH
Confidence 3445433 458889999988843 33458899999999 78888776676663 33211 12678999
Q ss_pred HHHHcCcEEEEecccccchhhhcCchhHh-hhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHH
Q 018243 165 IAKKHGLKLHIDGARIFNAAVALGVPVRR-LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243 (359)
Q Consensus 165 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (359)
+|+++|+++++|.+. |........+.+ +..++|++++|..|.||+|.+|++++++++++++++..-..+ +.....
T Consensus 182 ia~~~~lpvivD~aS--g~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~Ra--lrv~K~ 257 (395)
T COG1921 182 IAHEKGLPVIVDLAS--GALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRA--LRVDKE 257 (395)
T ss_pred HHHHcCCCEEEecCC--ccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhhhh--hhcCcH
Confidence 999999999999973 333222222332 345899999999999999999999999999988765443332 333555
Q ss_pred HHHHHHHHHHHhH
Q 018243 244 LCAAALVALQENV 256 (359)
Q Consensus 244 ~~~~~~~~l~~~~ 256 (359)
..++...+++.+.
T Consensus 258 tla~l~~aLe~y~ 270 (395)
T COG1921 258 TLAALEAALELYL 270 (395)
T ss_pred hHHHHHHHHHHHc
Confidence 5666666665443
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-14 Score=118.92 Aligned_cols=243 Identities=24% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCCCC--ccCC-----ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcce
Q 018243 18 EAMRAAMASAEVDDD--VLMH-----DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~--~~~~-----~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~ 90 (359)
+++.+++.+...+.. .|.. +.....+++.++.+.|++.+++++|...|++.++.++. ++.+|++++..-..
T Consensus 20 ~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la--~~~EvIvsRGelVe 97 (367)
T PF03841_consen 20 EEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA--KGKEVIVSRGELVE 97 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 677777776443322 1221 22346778889999999999999999999999888887 67788888764321
Q ss_pred e---eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC-CceecChhhHHHHHHHH
Q 018243 91 I---YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC-GGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 91 ~---~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p-tG~~~~~~~l~~i~~~~ 166 (359)
. +..-.+.+..|++++.|... ....+++++++|. ++|.+++-.|+.|.- .|.. ..-.++++.+++
T Consensus 98 iGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~--------e~Ta~ll~Vh~Sn~~i~GFt-~~~~~~el~~la 166 (367)
T PF03841_consen 98 IGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAIT--------ENTAALLKVHTSNFRIQGFT-GEVSLEELAELA 166 (367)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred cccccccccccccccccccccccc--ccccccccccccc--------cccccccccccccccccccc-ccccHHHHHHHH
Confidence 1 11013466789899888532 2336788899998 788887665655521 2221 112489999999
Q ss_pred HHcCcEEEEecccccchhhh---cCc----hhH-hhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCc
Q 018243 167 KKHGLKLHIDGARIFNAAVA---LGV----PVR-RLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~---~~~----~~~-~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
++|++++++|-.. |.... .+. +.. .+..++|++++|..|.+|+|..|+++++++++++++.. ...-.+
T Consensus 167 ~~~~lp~i~Dlgs--G~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~--pl~Ral 242 (367)
T PF03841_consen 167 KEHGLPVIVDLGS--GLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKH--PLGRAL 242 (367)
T ss_dssp HHHT--EEEE-TT--HHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHH--HHTTT-
T ss_pred hhcCCcEEEECCC--CCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhC--CCcceE
Confidence 9999999999763 22211 111 111 22358999999999999999999999999999998743 344444
Q ss_pred chhHHHHHHHHHHHHHhHH---------------HHhhhHHHHHHHHHHHHhcC
Q 018243 239 RQVGVLCAAALVALQENVL---------------VMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~---------------~~~~~~~~~~~~l~~~l~~~ 277 (359)
+..-...++...+++.+.+ ...+...++++.|...|+..
T Consensus 243 rvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 243 RVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp B--HHHHHHHHHHHHH--------------------------------------
T ss_pred eeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 4455555555555543221 12233445566666666654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-12 Score=107.86 Aligned_cols=294 Identities=18% Similarity=0.192 Sum_probs=162.3
Q ss_pred HHHHHHHHHhCCCC---eEEcCCch-HHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeecC---CC
Q 018243 42 RLETEMAKVMGKEA---GLFVPSGT-MGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN---QD 113 (359)
Q Consensus 42 ~l~~~la~~~~~~~---~~~~~~gt-~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~ 113 (359)
.+-..+.+..|.+. +++++-.| +++...+.++.. ..++.|+.+.-.|.+.++ + ....|.+++.|+.. +.
T Consensus 60 ~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~k-a--i~~AGl~~~vV~~~~~~d~ 136 (389)
T PF05889_consen 60 SLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFK-A--IERAGLEPVVVENVLEGDE 136 (389)
T ss_dssp HHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHH-H--HHHTT-EEEEE-EEEETTE
T ss_pred HHHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHH-H--HHhcCCeEEEeeccCCCCe
Confidence 33334445567763 45555444 345555555542 245789999999999998 3 66678888888532 22
Q ss_pred CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh
Q 018243 114 GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 114 ~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
-..|++.+++.+++.. ....+.+++++..+ .+... |++.+|.++|++||++.++-+||+.-.......-...
T Consensus 137 l~td~~~ie~~i~~~G-----~~~iLcvltttscf-apr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a 208 (389)
T PF05889_consen 137 LITDLEAIEAKIEELG-----ADNILCVLTTTSCF-APRLP--DDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQA 208 (389)
T ss_dssp EEEHHHHHHHHHHHHC-----GGGEEEEEEESSTT-TTB------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHH
T ss_pred eeccHHHHHHHHHHhC-----CCCeEEEEEecCcc-CCCCC--ccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHH
Confidence 3347888888887421 34455555455443 24443 4699999999999999999999644222211111111
Q ss_pred h-hcCccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHHHhhCCCcchhH-HHHHHHHHHH--HHhHHHHhhhHHHHH
Q 018243 194 L-VQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLRKTLGGGMRQVG-VLCAAALVAL--QENVLVMLDGDHKKA 267 (359)
Q Consensus 194 ~-~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~~~~~~~~~~~~~~ 267 (359)
+ ....|+++-|.-|.|-.|.| +.+.+ ++..+..+. ..+.+..+..+ ......+..+ ..+.. .+....+..
T Consensus 209 ~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs---~~YpGRas~sp~ld~~itLl~LG~~g~~~-ll~~r~~~f 284 (389)
T PF05889_consen 209 WRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVS---KEYPGRASASPSLDLFITLLSLGCTGYGA-LLKERKASF 284 (389)
T ss_dssp HHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHH---HTSHSHBTSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHH---HHhhhhhhcccchHHHHHHHHHhhhHHHH-HHHHHHHHH
Confidence 1 13689999999999999988 44554 566766643 22222222222 2222222222 22222 333444444
Q ss_pred HHHHHHHh----cCCCceEecCCccceEEEEEeccchH---HHHHHHHHHHHhcCcee----ccCC---C--------cE
Q 018243 268 KLLAEGLN----QLKGLRVDVDAVETNIVYFEITEDSK---LYAACLLKKLEEHGVLV----MPES---S--------TR 325 (359)
Q Consensus 268 ~~l~~~l~----~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~----~~~~---~--------~~ 325 (359)
.++.+.|+ +. +-.+...|...-.+.+.++.-.. .+...|...|..+||.- .+.+ . .+
T Consensus 285 ~~l~erl~~~aee~-~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Y 363 (389)
T PF05889_consen 285 PYLKERLKKWAEEV-GERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPY 363 (389)
T ss_dssp HHHHHHHHHHHHHT-TEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSE
T ss_pred HHHHHHHHHHHHHh-hhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHH
Confidence 44444444 34 43443222233334455542111 25678999998887753 2221 1 56
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 326 VRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 326 lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+-++...+++++|+|.++++|+++++
T Consensus 364 lt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 364 LTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 78877789999999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-12 Score=101.58 Aligned_cols=331 Identities=16% Similarity=0.149 Sum_probs=193.9
Q ss_pred ChHHHHHHHHHcCCCC---CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh--hcCCeEEecCCCcc
Q 018243 15 KPTEAMRAAMASAEVD---DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE--TRGSEVILGDNSHI 89 (359)
Q Consensus 15 ~~~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~--~~g~~vl~~~~~~~ 89 (359)
..+|++.++......- ...+-.++..+-.++..+.+-+.+.++|++||++|+..+|+.+.. +..|.|.+...+|.
T Consensus 61 hchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHG 140 (452)
T KOG1403|consen 61 HCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHG 140 (452)
T ss_pred cCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhcc
Confidence 3458888777653211 122323344444455455555666689999999999999998864 34455555555543
Q ss_pred eeecccccccc------CC-----ccceee-ecCCC--C-------------CCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 90 HIYENGGISTI------GG-----VHPRTV-KNNQD--G-------------TMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 90 ~~~~~~~~~~~------~g-----~~~~~v-~~~~~--~-------------~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
.... ..+. .| -+.+.+ |.++- | ..=.+.+++.+++..... .++++.+.
T Consensus 141 Hl~s---~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g--~gvAAfiA 215 (452)
T KOG1403|consen 141 HLQS---VMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKG--QGVAAFIA 215 (452)
T ss_pred ceee---eeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcC--CcHHHHHH
Confidence 3211 1111 11 122223 22111 1 111234555554321111 45666666
Q ss_pred eccccCCCceecCh-hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEe
Q 018243 143 ENTHANCGGRCLSV-EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIV 218 (359)
Q Consensus 143 ~~~~~~ptG~~~~~-~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~ 218 (359)
+.-.+ -+|.+.|. .+.+++.+..+.+|.+.|.||++..+... |.....+ ..-+|+++++..-..|-|.++ ++
T Consensus 216 EslQS-CGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRv--G~hyWafq~y~fiPDIVtmgKpmGNGhPVa~-Va 291 (452)
T KOG1403|consen 216 ESLQS-CGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRV--GSHYWAFQTYNFIPDIVTMGKPMGNGHPVAA-VA 291 (452)
T ss_pred HHHHh-cCCcccCchhHHHHHHHHHhcCCCeEEeehhhhccccc--chhhhhhhhhccccchheecccCCCCCeeeE-Ee
Confidence 65555 66776554 89999999999999999999998544333 3322222 124566655543333445544 66
Q ss_pred cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC-CceEecC-CccceEEEEE
Q 018243 219 GSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK-GLRVDVD-AVETNIVYFE 295 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~-g~~~~~~-~~~~~~~~~~ 295 (359)
..+++.+.+....-.+..++..++..++.++..++...+ +.++...+..++|...|+++. ..+...+ ...+.|+-+.
T Consensus 292 ttkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGId 371 (452)
T KOG1403|consen 292 TTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGID 371 (452)
T ss_pred ccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeee
Confidence 788888887643333334444567788888877765443 244445566777777776641 1122211 2345555565
Q ss_pred eccc------hHHHHHHHHHHH-HhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 296 ITED------SKLYAACLLKKL-EEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 296 ~~~~------~~~~~~~~~~~l-~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+..+ +...+..+..+| +.+||.+...| ++.+.|-+..+.++++.++++..|++++.-+.
T Consensus 372 LVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 372 LVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred eecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 5331 223566788888 67889986654 45688877778899999999999999987544
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=114.19 Aligned_cols=299 Identities=16% Similarity=0.175 Sum_probs=193.1
Q ss_pred ChHHHHHHHHHHHHhCCCCe-EEcCCchH---HHHHHHHHhhhhcCC----eEEecCCCcceeeccccccccCCccceee
Q 018243 37 DPTAFRLETEMAKVMGKEAG-LFVPSGTM---GNLISVLVHCETRGS----EVILGDNSHIHIYENGGISTIGGVHPRTV 108 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~-~~~~~gt~---a~~~~l~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 108 (359)
.+...+|+..+++..|.+.. +.-+||.+ +.+.++++....+|+ ..++|-.+|...- +.+.+.|.+++.|
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP---ASA~MagmkvvpV 657 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP---ASAAMAGMKVVPV 657 (1001)
T ss_pred HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh---hhHHhcCCEEEEe
Confidence 45567888999999999875 44556654 455555555443443 4788999988765 3488999999999
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC
Q 018243 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG 188 (359)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 188 (359)
..+.+|.+|..+|++..+++. .+.+++++ +.+++ -|+. .+.+++++++.++||.-+..|+|- +.+.. |
T Consensus 658 ~~~~~G~id~~dLk~kaekh~-----~~Laa~Mv-TYPST-~Gvf--E~~i~d~cd~iHehGGQVYlDGAN-MNAqV--G 725 (1001)
T KOG2040|consen 658 GCDANGNIDMVDLKAKAEKHK-----DNLAALMV-TYPST-HGVF--EEGIDDICDIIHEHGGQVYLDGAN-MNAQV--G 725 (1001)
T ss_pred eccCCCCccHHHHHHHHHHhh-----hhhheeEE-ecccc-cccc--cccHHHHHHHHHhcCCEEEecCCC-cccee--c
Confidence 999999999999999988643 56777877 44442 3666 457999999999999999999874 22221 2
Q ss_pred c-hhHhhhcCccEEEEeccccCCCcee------eEEecCHHHHHHHHHHHHh--------h-CCCcch----hHHHHHHH
Q 018243 189 V-PVRRLVQAADSASVCLSKGLGAPVG------SVIVGSKEFIKKARRLRKT--------L-GGGMRQ----VGVLCAAA 248 (359)
Q Consensus 189 ~-~~~~~~~~~d~~~~s~~K~~g~~~g------g~~~~~~~~~~~~~~~~~~--------~-~~~~~~----~~~~~~~~ 248 (359)
. ...++ ++|++-+.+||+|+.|-| |-+..++.+...+...... . -++.+. +..+....
T Consensus 726 lc~pGd~--GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpIS 803 (1001)
T KOG2040|consen 726 LCRPGDI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPIS 803 (1001)
T ss_pred ccCCccc--cccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhH
Confidence 2 22233 889999999999966522 4455566655543211110 0 000111 11112222
Q ss_pred HHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE---EEEEec---cchHHHHHHHHHHHHhcCcee
Q 018243 249 LVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI---VYFEIT---EDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 249 ~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~l~~~gi~~ 318 (359)
+.-++ .++.+.-+...-+++|+.+.|++. +++......+.. +.+.+. ...++++.+++++|.++|...
T Consensus 804 waYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHa 881 (1001)
T KOG2040|consen 804 WAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHA 881 (1001)
T ss_pred HHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCC
Confidence 22221 223323344556789999999885 333222222211 222222 223478899999999999976
Q ss_pred c---cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 319 M---PESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 319 ~---~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
- -.-.+.+-|-+....+.+++|++++++-.+-+++.
T Consensus 882 PTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 882 PTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred CccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHH
Confidence 1 11356788888878889999999999988877765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-10 Score=109.38 Aligned_cols=273 Identities=12% Similarity=0.110 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhc--CCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 40 AFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETR--GSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 40 ~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~--g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
.-+++..++++.|.+ ++-++-.+|.+.+.++++....+ ..+|++++..|+.+.... ..+...|++++.
T Consensus 126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------- 198 (954)
T PRK12566 126 LLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------- 198 (954)
T ss_pred HHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------
Confidence 356778899999998 44777777777776555543222 568999999987654300 113345555543
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
+++++.++ .++.+|++..| | -.|.+. ++++|.+++++.|.+++ +.+--. ... .-.+..++
T Consensus 199 ----~~~~~~~~--------~~~~~v~vq~P-~-~~G~i~---d~~~i~~~~h~~gal~~-~~~d~l-aL~-ll~~Pge~ 258 (954)
T PRK12566 199 ----DAVDNLAA--------HAVFGALLQYP-D-THGEIR---DLRPLIDQLHGQQALAC-VAADLL-SLL-VLTPPGEL 258 (954)
T ss_pred ----cchhhcCC--------CCEEEEEEECC-C-CceEEc---cHHHHHHHHHHcCCEEE-EEeCHH-HHh-CCCChhhc
Confidence 23344444 46778888444 3 468874 58999999999999866 433111 111 11223334
Q ss_pred hcCccEEEE-----eccccCCCceeeEEecCHHHHHH----------------------------HHHHHHhhCCCcchh
Q 018243 195 VQAADSASV-----CLSKGLGAPVGSVIVGSKEFIKK----------------------------ARRLRKTLGGGMRQV 241 (359)
Q Consensus 195 ~~~~d~~~~-----s~~K~~g~~~gg~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 241 (359)
++|+++. +..-.||+|..|++..++++..+ +++-+.+...++.+.
T Consensus 259 --GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qa 336 (954)
T PRK12566 259 --GADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQV 336 (954)
T ss_pred --CCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHH
Confidence 8998854 22233455555888888776655 222222333333332
Q ss_pred HHHHHHHHH-HH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCcee
Q 018243 242 GVLCAAALV-AL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 242 ~~~~~~~~~-~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
-....++.. .+ .+++.+..++...++.+|.+.|++. |+++... ....-+.+++.. ...++.+...+.||-+
T Consensus 337 L~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~~~~-~fF~~~~v~~~~----~~~~~~~~a~~~~~n~ 410 (954)
T PRK12566 337 LLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK-GIKRLNR-HFFDTLTLEVGG----AQAAIIESAEAARINL 410 (954)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCccccC-CccceEEEEccC----CHHHHHHHHHHCCCee
Confidence 222222222 23 4556556777888999999999995 9987432 112223344421 4667888888899998
Q ss_pred ccCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 319 MPESSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 319 ~~~~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.-.+...+.|++....+.+|++.+++.+.
T Consensus 411 r~~~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 411 RILGRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred EEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 77677789999999999999999999984
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-11 Score=96.32 Aligned_cols=278 Identities=20% Similarity=0.181 Sum_probs=177.5
Q ss_pred HHHHHHHHcCCCC------CCccCC-ChHHHHHHHHHHHHhCCCCe---EEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 18 EAMRAAMASAEVD------DDVLMH-DPTAFRLETEMAKVMGKEAG---LFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 18 ~~~~~a~~~~~~~------~~~~~~-~~~~~~l~~~la~~~~~~~~---~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
..++++..+...+ ...|++ +-+.+.|++-.++.||.+.+ ..+-|||.|+-.+|..++ +|||+++.....
T Consensus 38 ~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L-RpgDell~i~G~ 116 (416)
T COG4100 38 KKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL-RPGDELLYITGS 116 (416)
T ss_pred HHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc-CCCCeEEEecCC
Confidence 4566777653322 234665 44678899999999999976 467899999999999999 599998866555
Q ss_pred cceeec--------cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 88 HIHIYE--------NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 88 ~~~~~~--------~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
-+.+.+ .....+-.|+...-++...+|.+|.+.++..++ +++++|.+.-+....---.++.+++
T Consensus 117 PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~--------~~tkli~IQRS~GY~~RpS~~I~eI 188 (416)
T COG4100 117 PYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS--------DRTKLIGIQRSKGYAWRPSLSIAEI 188 (416)
T ss_pred cchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcC--------ccceEEEEEeccCcCCCCcccHHHH
Confidence 444432 112234457777788888899999999999999 8999999955554333335667899
Q ss_pred HHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhh
Q 018243 160 DSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~ 234 (359)
+++.++.++- ++++.||.+ ||.+... ..+...++|++..|+-|.-|+. .||++.+++++++...-....-
T Consensus 189 ~~~i~~vk~inpn~ivFVDNC--YGEFvE~---~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaP 263 (416)
T COG4100 189 EEMITFVKEINPNVIVFVDNC--YGEFVEE---KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAP 263 (416)
T ss_pred HHHHHHHHhcCCCEEEEEecc--chhhhhc---cCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecC
Confidence 9999998875 799999999 4544311 2233348999999999998775 4589999999998753111111
Q ss_pred CCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecC---CccceEEEEEeccchHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVD---AVETNIVYFEITEDSKLYAACLLK 309 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
|.+.. .+........-++.+. .+...+..+-+......|.++ |+.+.+. +...-+..+.+... ...-+|++
T Consensus 264 GIG~e-~Gat~~~l~~myqGlFlAPhvv~qa~Kga~fta~~le~l-g~~~~P~~~~kRtDlIQavkf~~~--eKmIaFcq 339 (416)
T COG4100 264 GIGRE-GGATLYSLREMYQGLFLAPHVVSQAVKGAHFTARFLEKL-GFPVNPKYDAKRTDLIQAVKFGSK--EKMIAFCQ 339 (416)
T ss_pred Ccccc-ccccHHHHHHHHhhhccchHHHHHHhhhhHHHHHHHHHc-CCCCCCcccccccchhhheecCCH--HHHHHHHH
Confidence 11110 0111111111111111 123334445555666667777 8776321 11223445666652 35566776
Q ss_pred HHHh
Q 018243 310 KLEE 313 (359)
Q Consensus 310 ~l~~ 313 (359)
.+..
T Consensus 340 aiQ~ 343 (416)
T COG4100 340 AIQA 343 (416)
T ss_pred HHhh
Confidence 6643
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-10 Score=91.86 Aligned_cols=318 Identities=14% Similarity=0.171 Sum_probs=178.1
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC--C--CCccC-------CChHHHHHHHHHHHHhCCCCe---EEcC-CchHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV--D--DDVLM-------HDPTAFRLETEMAKVMGKEAG---LFVP-SGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~--~--~~~~~-------~~~~~~~l~~~la~~~~~~~~---~~~~-~gt~a~~~ 68 (359)
+.++|+++....|.+-+.++-.+... + ..... ......+.++.++++++.+.. +++. |+|.+..+
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~ 84 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAM 84 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHH
Confidence 47899998877775433333222111 1 11111 123457788889999999864 4444 45566667
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCcccee--ee-cCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRT--VK-NNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~--v~-~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
+...+....+.. .+...+ ++... ...++..+..+.. .. ...+ .-++++... +. .+..-|.+
T Consensus 85 ~p~nLl~~~~~~-yv~~g~-Ws~~a-~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~--------~~~ayv~~- 150 (365)
T COG1932 85 APMNLLGKRGTD-YVDTGA-WSEFA-IKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FS--------DNDAYVHF- 150 (365)
T ss_pred HHHhhhcccCce-eEeeee-hhHhH-HHHHHHhcccccccccceeccCccCCCChhhcc--cC--------CCccEEEE-
Confidence 777777534332 233333 22221 0123333421221 11 1111 122333332 22 23333555
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHH
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKE 222 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~ 222 (359)
+++++-+|+-++. ...+. .+.++|+|.+...+.. ... + ...|++++|..|.+| |.| ++++.+++
T Consensus 151 ~~NeTi~Gv~v~~--~p~~~-----~~~~~v~D~SS~ilsr---~iD---v-sk~dviyagaQKnlG-paGltvvIvr~~ 215 (365)
T COG1932 151 CWNETISGVEVPE--LPDIG-----SDGLLVADASSAILSR---PID---V-SKYDVIYAGAQKNLG-PAGLTVVIVRPD 215 (365)
T ss_pred ecCCcccceEccC--CCCCC-----CCceEEEecccHHhcC---CCC---h-hHcceEEEehhhccC-ccceEEEEEcHH
Confidence 4555567887662 22221 1278999987433221 111 1 267899999999999 577 88889999
Q ss_pred HHHHHHHH--HH--------hhCCCcchhHHHHHH----HHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCc-eE-ec
Q 018243 223 FIKKARRL--RK--------TLGGGMRQVGVLCAA----ALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGL-RV-DV 284 (359)
Q Consensus 223 ~~~~~~~~--~~--------~~~~~~~~~~~~~~~----~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~-~~-~~ 284 (359)
++++++.. .. ..++++..++..+.. ...++ +.+++...++..++++.|.+.+.+. ++ .. ..
T Consensus 216 ~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~ 294 (365)
T COG1932 216 LLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVA 294 (365)
T ss_pred HHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-Cccccccc
Confidence 99887543 11 112222222222111 12222 3456667778889999999999997 44 22 12
Q ss_pred CCccc-eEEEEEeccchHHHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 285 DAVET-NIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 285 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+...+ ..+.|.+.+. .-...|.++++++|+..--+ ..+++|+++...++.++++.+++.++.+.++.
T Consensus 295 ~~~RS~mnV~f~~~~~--~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 295 KANRSRMNVTFTLVDA--ELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred hhhccceeEEEEcCcH--HHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence 22222 2366666652 24567888888887766333 23459999999999999999999998877653
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-10 Score=93.72 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=143.2
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhh
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRL 194 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~ 194 (359)
.++++++.|.++.... ..+.++++++..+..+-.-.+.++.+++.+++++||+.+|+||+|..++....-. ....+
T Consensus 254 Cl~~Ve~li~~~~~k~--~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l 331 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKK--KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL 331 (484)
T ss_pred HHHHHHHHHHHHhhcC--CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC
Confidence 4668888888754332 3677899999998655567888999999999999999999999997765542111 12233
Q ss_pred hcCccEEEEeccccCCCceeeEEecCHHHHHH--HHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPVGSVIVGSKEFIKK--ARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
...+|++ ++||-|- .||+. -++++.-. .+.+...+|.... .++.......++ .+..++......+.|..
T Consensus 332 ~~PpD~v--TFSKK~q--~gGff-h~~~frpn~pYrifNTWmGdP~k--~lll~~vv~~I~--~~~Ll~n~~~vG~~l~~ 402 (484)
T KOG1405|consen 332 DSPPDVV--TFSKKFQ--TGGFF-HDEEFRPNEPYRIFNTWMGDPSK--NLLLEEVVQEIK--REDLLNNVAHVGKALLK 402 (484)
T ss_pred CCCccce--ehhhhhh--cCccc-cCcccCCCchHHHhhhhcCChHH--HHHHHHHHHHHh--HHHHHHHHHHHHHHHHH
Confidence 3456666 4557664 34433 33343322 2223333332221 111111121121 12244445555566666
Q ss_pred HHhcC----CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 273 GLNQL----KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 273 ~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
.|.++ |+.-- .-+..+.|+.+.++.+ -..+.++..++-+|+.+...+...+|+-++....+...+-+++++++
T Consensus 403 gL~~Lq~~~p~~~~-~~RGrGTF~a~d~ps~--~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k 479 (484)
T KOG1405|consen 403 GLLELQAKYPGKIN-NLRGRGTFIAWDCPSG--SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDK 479 (484)
T ss_pred HHHHHHHhCchhhh-cccccceEEEEeCCCh--HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHH
Confidence 66553 44322 2245888888888873 46678999999999999888888999998888899999999999998
Q ss_pred HHHH
Q 018243 349 IYAG 352 (359)
Q Consensus 349 ~~~~ 352 (359)
.+..
T Consensus 480 ~l~~ 483 (484)
T KOG1405|consen 480 ILAG 483 (484)
T ss_pred Hhcc
Confidence 8764
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=88.75 Aligned_cols=296 Identities=15% Similarity=0.133 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCC---eEEecCCCcceeecc-ccccccCCccceee--ecC-C
Q 018243 41 FRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGS---EVILGDNSHIHIYEN-GGISTIGGVHPRTV--KNN-Q 112 (359)
Q Consensus 41 ~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~---~vl~~~~~~~~~~~~-~~~~~~~g~~~~~v--~~~-~ 112 (359)
..+-..++...|+.. .+.+.+.-.+++..+...+-+|.. +|++..-++++-+.. -..+++.|..+... ... .
T Consensus 114 e~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePR 193 (465)
T KOG3846|consen 114 EPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPR 193 (465)
T ss_pred hhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccc
Confidence 344555777788764 466666667777777666544543 577777666554320 02266777665432 111 1
Q ss_pred C--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch
Q 018243 113 D--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP 190 (359)
Q Consensus 113 ~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 190 (359)
. -.+-.+++.+.|+.+. ..+++|+++..+. .||+.++ +.+|...-+..|+++=.|-||++|..+ ..
T Consensus 194 EGEetlRteDILd~IEkng-----DeiA~v~fSGvqy-YTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAvgNVp---L~ 261 (465)
T KOG3846|consen 194 EGEETLRTEDILDTIEKNG-----DEIALVCFSGVQY-YTGQYFD---IGAITFAGQFKGCLVGFDLAHAVGNVP---LQ 261 (465)
T ss_pred ccccchhHHHHHHHHHhcC-----CeEEEEEeeccee-ecccccc---hhhhhhcccCCCcEechhhhhhhcCCc---eE
Confidence 2 2356678888887432 5788999977766 8999988 788887777779999999998775442 22
Q ss_pred hHhhhcCccEEEEeccccCCCcee---eEEecCHHHHHHHHHHHHh---------------------hCCCcchhHHHHH
Q 018243 191 VRRLVQAADSASVCLSKGLGAPVG---SVIVGSKEFIKKARRLRKT---------------------LGGGMRQVGVLCA 246 (359)
Q Consensus 191 ~~~~~~~~d~~~~s~~K~~g~~~g---g~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 246 (359)
.. .+++|+......|.+..+.| |..+-.+...+...++... .|...+.+++...
T Consensus 262 LH--dWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v 339 (465)
T KOG3846|consen 262 LH--DWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDV 339 (465)
T ss_pred Ee--ecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHH
Confidence 22 34899999988998854333 5444444433332222222 2222333444444
Q ss_pred HH-HHHHHHhH----HHHhhhHHHHHHHHHHHHhcCC-----------CceEecC---CccceEEEEEeccchHHHHHHH
Q 018243 247 AA-LVALQENV----LVMLDGDHKKAKLLAEGLNQLK-----------GLRVDVD---AVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 247 ~~-~~~l~~~~----~~~~~~~~~~~~~l~~~l~~~~-----------g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
++ ...++-+. +..+.+..-...+|...++... -+.+..| ...+..+.+.++. ....+
T Consensus 340 ~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss----p~~~v 415 (465)
T KOG3846|consen 340 VALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS----PTPKV 415 (465)
T ss_pred HHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC----CchHH
Confidence 44 34444332 2233343444445544444332 2333332 2457778888876 34689
Q ss_pred HHHHHhcCceeccCCCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPESSTRVRIV-VHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~~~gi~~~~~~~~~lRi~-~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++|.++|+..-...++.+|+. .+.+++-.|+..++..|.+++.++.
T Consensus 416 fqeL~krGv~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 416 FQELHKRGVIGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred HHHHHHcCeeccccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888999997 5668899999999999999988764
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-10 Score=93.84 Aligned_cols=274 Identities=14% Similarity=0.095 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHh---CCC----CeEEcCCchHHHHHH-HHHhhhh--c---CCeEEecCCCcceeeccccccccCCccc
Q 018243 39 TAFRLETEMAKVM---GKE----AGLFVPSGTMGNLIS-VLVHCET--R---GSEVILGDNSHIHIYENGGISTIGGVHP 105 (359)
Q Consensus 39 ~~~~l~~~la~~~---~~~----~~~~~~~gt~a~~~~-l~~~~~~--~---g~~vl~~~~~~~~~~~~~~~~~~~g~~~ 105 (359)
...+|++.|.++. |.. .-+++.+|+.-++.+ +.++... + ..+|+...|.|.. |. .......-..
T Consensus 44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~-Y~--~qt~~f~s~~ 120 (363)
T PF04864_consen 44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSS-YP--EQTDFFDSRL 120 (363)
T ss_dssp S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CH-HH--HHCCCT-BTT
T ss_pred ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccc-hH--HHHHhccccC
Confidence 4477777777664 332 227777776655554 4454432 1 1258888887544 54 1233322222
Q ss_pred eee-ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchh
Q 018243 106 RTV-KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184 (359)
Q Consensus 106 ~~v-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~ 184 (359)
..+ .....+. +. + .....|=+.+.+|||.|.+ .+.+. +.-+..+|-|-||-+ .
T Consensus 121 y~w~Gda~~~~-~~-------~--------~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYW--P 174 (363)
T PF04864_consen 121 YKWAGDASNFK-NS-------D--------NPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYW--P 174 (363)
T ss_dssp EEEEEECCCGT-T--------S---------CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-S--T
T ss_pred ccccccHHhhc-cC-------C--------CCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeec--c
Confidence 223 2111111 00 0 1222333447888899985 22222 445667899998633 2
Q ss_pred hhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHH-HHH-------
Q 018243 185 VALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALV-ALQ------- 253 (359)
Q Consensus 185 ~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------- 253 (359)
-+.+.+ -..+.|++.+++||.=|- ..|+.++-++++.+++..+......+.+.-.++.++.+. .+-
T Consensus 175 hyTpI~---~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~ 251 (363)
T PF04864_consen 175 HYTPIT---APADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEK 251 (363)
T ss_dssp TTS------S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHT
T ss_pred cccccC---CCCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCC
Confidence 222222 224778999999998754 344567778999999887777666666655555555432 221
Q ss_pred ---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecC------------CccceEEEEEeccchHHHHHHHHHHHHhcCcee
Q 018243 254 ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 254 ---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
+..+--.+...++-++|++.++...-|.+..- .+...|.|+++..+ ..++..+.|++.||..
T Consensus 252 ~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e---ed~DC~~~l~~~~I~t 328 (363)
T PF04864_consen 252 GTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE---EDEDCYAVLREAKIIT 328 (363)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC---GGSSHHHHHHCTTEEE
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc---ccccHHHHHHhCCccc
Confidence 12332344566777888888887544444211 12466899999863 3346667788999998
Q ss_pred ccC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 319 MPE-----SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 319 ~~~-----~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..| +..++|+|+ ..++++++.++++|..+
T Consensus 329 r~G~~fga~~ryVRlSm--l~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 329 RSGVLFGADSRYVRLSM--LKRDDDFDQLLERLSKL 362 (363)
T ss_dssp EEGGGGTS-TTEEEEES--SS-HHHHHHHHHHHHCC
T ss_pred CCCCccCCCCCeEEEec--cCCHHHHHHHHHHHHhh
Confidence 554 567899998 68999999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-09 Score=84.64 Aligned_cols=296 Identities=16% Similarity=0.161 Sum_probs=159.4
Q ss_pred HHHHHHHHHhCCC---CeEEcCCch-HHHHHHHHHhhhhcC--CeEEecCCCcceeeccccccccCCccceeeecC---C
Q 018243 42 RLETEMAKVMGKE---AGLFVPSGT-MGNLISVLVHCETRG--SEVILGDNSHIHIYENGGISTIGGVHPRTVKNN---Q 112 (359)
Q Consensus 42 ~l~~~la~~~~~~---~~~~~~~gt-~a~~~~l~~~~~~~g--~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~ 112 (359)
++...+..+.|.. +|++++=.| +++...+..+..++. .-|+.++-...+.++ . ....|.+++.+..- +
T Consensus 61 e~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~k--s-i~~agfepiiie~i~d~d 137 (432)
T KOG3843|consen 61 EFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFK--S-IIHAGFEPIIIENILDGD 137 (432)
T ss_pred HHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHH--H-HHhcCCCceeeeccccch
Confidence 3333444455554 454443222 455556666654332 236677766666665 1 44567788777322 2
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceec--ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL--SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP 190 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~--~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~ 190 (359)
.-..|++.+++.+++ .+..+|++.++.. .... +.+.+++|..+|..|+++-++..+| |... ...
T Consensus 138 ~l~tdleav~~~iee-------~g~dcilci~stt---scfapr~pd~leaiaaica~~diphivnnay--glqs--ee~ 203 (432)
T KOG3843|consen 138 ELITDLEAVEAIIEE-------LGEDCILCIHSTT---SCFAPRSPDNLEAIAAICAAHDIPHIVNNAY--GLQS--EEC 203 (432)
T ss_pred HHHHhHHHHHHHHHH-------hCCceEEEEeecc---cccCCCCCchHHHHHHHHHccCchhhhcccc--ccch--HHH
Confidence 233488999999986 3444444423322 2333 3488999999999999999999985 3322 112
Q ss_pred hHhhh-----cCccEEEEeccccCCCceeeEEec--CHHHHHHHHHHHHhhCCCcchhH-HHHHHHH-----HHHHHhHH
Q 018243 191 VRRLV-----QAADSASVCLSKGLGAPVGSVIVG--SKEFIKKARRLRKTLGGGMRQVG-VLCAAAL-----VALQENVL 257 (359)
Q Consensus 191 ~~~~~-----~~~d~~~~s~~K~~g~~~gg~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~ 257 (359)
+..+. ...|.++.|+-|.|..|.||.++. +..+++.+. ..+.+..+.++ ......+ .++.+.+.
T Consensus 204 i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~ia---k~ypgrasa~ps~dllitll~~gqn~f~e~~~ 280 (432)
T KOG3843|consen 204 IHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIA---KMYPGRASASPSLDLLITLLSLGQNAFKELFG 280 (432)
T ss_pred HHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHH---HhCCCccccCccHHHHHHHHHhchhHHHHHHH
Confidence 22221 356778889999999999975554 566666643 33333322222 1111112 22233333
Q ss_pred HHhhhHHHHHHHHHHHHhcCCCceEe-cCCcc-ceEEEEE-eccchHHHHHHHHHHHHhcCce---eccCCC--------
Q 018243 258 VMLDGDHKKAKLLAEGLNQLKGLRVD-VDAVE-TNIVYFE-ITEDSKLYAACLLKKLEEHGVL---VMPESS-------- 323 (359)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~gi~---~~~~~~-------- 323 (359)
++.+....+++.+...-+.+ |-.+. .|... +.-+.+. ++.........|-..|...||. ++|.+.
T Consensus 281 eqkemf~~l~~ki~~~ae~~-~e~l~~~p~n~is~amtl~ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ 359 (432)
T KOG3843|consen 281 EQKEMFLKLRNKIIKFAEAI-GECLLETPENEISLAMTLKTIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGC 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhhcCCCchhhhhhhhccCChHHhhHHHHHHHHHHhccccCceEeeccccceeeece
Confidence 33334444444444333333 22221 11111 1112222 2221011224555666666664 344321
Q ss_pred --------------cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 324 --------------TRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 324 --------------~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
.++.+.++.+++..|+|.++.+|++++.++.++..
T Consensus 360 ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ke~a 408 (432)
T KOG3843|consen 360 EFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFRKELA 408 (432)
T ss_pred EEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHHHHHh
Confidence 12555666678999999999999999998876644
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=82.01 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=163.6
Q ss_pred HHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHH
Q 018243 44 ETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDL 120 (359)
Q Consensus 44 ~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~ 120 (359)
...++++.|.+. +-+.--||.|.++..+.....++.+++++..+|..+.... .-+.-.|++++.. |.++
T Consensus 169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~--------~~~~ 240 (1001)
T KOG2040|consen 169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS--------DIKE 240 (1001)
T ss_pred HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec--------CHHH
Confidence 345777777763 4677788888888777766667788999999998776410 0011123222111 3333
Q ss_pred HHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccE
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADS 200 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~ 200 (359)
..... .....+++ ..+. --|.+.+ ..++++.+++.|.++++-.- .... ..-++..++ ++|+
T Consensus 241 ~~~s~---------~~v~gvlv-QYP~-t~G~i~d---~~el~~~a~~~~s~vv~atD--LLaL-tiLrpPgef--GaDI 301 (1001)
T KOG2040|consen 241 ADYSS---------KDVSGVLV-QYPD-TEGSVLD---FDELVELAHANGSLVVMATD--LLAL-TILRPPGEF--GADI 301 (1001)
T ss_pred hhccc---------cceeEEEE-EcCC-CCCcccC---HHHHHHHhhccCceEEEeeh--hhHH-HccCChhhc--Ccee
Confidence 22211 34566666 4444 2467666 78899999999988766431 1111 112334444 8998
Q ss_pred EEEeccccCCCcee------eEEecCHHHHHH----------------------------HHHHHHhhCCCcchhHHHHH
Q 018243 201 ASVCLSKGLGAPVG------SVIVGSKEFIKK----------------------------ARRLRKTLGGGMRQVGVLCA 246 (359)
Q Consensus 201 ~~~s~~K~~g~~~g------g~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 246 (359)
.+.|... ||.|.| |++.+.+++... +++-+.+...++.+.-+...
T Consensus 302 avGSsQR-FGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANm 380 (1001)
T KOG2040|consen 302 AVGSSQR-FGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANM 380 (1001)
T ss_pred eeccccc-cCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHH
Confidence 8887776 666644 444444443322 11111122222322222222
Q ss_pred HHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC
Q 018243 247 AALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS 323 (359)
Q Consensus 247 ~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 323 (359)
++..++ .+.++++.++.......|...|+.. |-+++. ....-.+-+++.. +.+++.++..+++|-+.....
T Consensus 381 aAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~-k~fFDTLkI~~~~----s~~~~l~rA~~~~iNlr~~ed 454 (1001)
T KOG2040|consen 381 AAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQH-KPFFDTLKIRCGC----SAEEVLDRAAKRQINLRLVED 454 (1001)
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhcc-ccccceEEEEecC----cHHHHHHHHHhhcCceEEeec
Confidence 223333 3555557777778888999999987 766642 2222224445544 688888888888888877778
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 324 TRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 324 ~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+.+-+++....+++|++.++..+.
T Consensus 455 ~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 455 GTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred CceEEeecccccHHHHHHHHHHHc
Confidence 889999988899999999999886
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00017 Score=58.67 Aligned_cols=318 Identities=16% Similarity=0.161 Sum_probs=168.7
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCC-C----------CccCCChHHHHHHHHHHHHhCCCCe---EEc-CCchHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVD-D----------DVLMHDPTAFRLETEMAKVMGKEAG---LFV-PSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~-~----------~~~~~~~~~~~l~~~la~~~~~~~~---~~~-~~gt~a~~~ 68 (359)
+.++|+.+....|++-++++-++...- . ..-.....+.+.+..+.++++.+.. ++. .+||...-+
T Consensus 7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaA 86 (370)
T KOG2790|consen 7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAA 86 (370)
T ss_pred ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccc
Confidence 458999988888876555555543211 1 1111234567888889999999864 444 455554444
Q ss_pred HHHHhhh-hcC---CeEEecCCCcceeeccccccccCCccceeeecCC--C-C-CCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 69 SVLVHCE-TRG---SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--D-G-TMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 69 ~l~~~~~-~~g---~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~-~-~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
+...+.. +.| |-|+.-..+-...- -++..|..-..++.-. . + -+|.+.++. + ++.+.|
T Consensus 87 v~lNL~glK~g~~AdYiVTGsWS~KA~~----EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~--------~da~yv 152 (370)
T KOG2790|consen 87 VPLNLIGLKHGRCADYVVTGSWSAKAAE----EAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--N--------PDASYV 152 (370)
T ss_pred cchhhhccccCCccceEEeccccHHHHH----HHHhhCCceEEeccccccccCcCCChhhccc--C--------CCccEE
Confidence 4444442 233 22443332211111 1333442212221111 1 1 235444442 2 455566
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEec
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVG 219 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~ 219 (359)
+. ....+--|+-++. +. +-..+|.++|+|-+.-|...+ .. . ...+++..+..|..| |.| .+++.
T Consensus 153 yy-CaNETVHGVEf~~--~P----~~~~~~~vlVaDmSSnflSrp---vD---v-sk~gvi~aGAQKN~G-~aG~Tvviv 217 (370)
T KOG2790|consen 153 YY-CANETVHGVEFDF--IP----VNDPKGAVLVADMSSNFLSRP---VD---V-SKFGVIFAGAQKNVG-PAGVTVVIV 217 (370)
T ss_pred EE-ecCceeeceecCC--CC----CCCCCCceEEEecccchhcCC---cc---c-hhcceEEeccccccC-ccccEEEEE
Confidence 66 2333344665442 22 223578999999763221111 11 1 144577779999998 577 77778
Q ss_pred CHHHHHHHHHHHHh-----------hCCCcc-hhHHH-HHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 220 SKEFIKKARRLRKT-----------LGGGMR-QVGVL-CAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 220 ~~~~~~~~~~~~~~-----------~~~~~~-~~~~~-~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
+++++......... .-+++. ..++. +-.....+ +.++....+...+.++.|.+.+.+..||-...
T Consensus 218 r~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cp 297 (370)
T KOG2790|consen 218 RKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCP 297 (370)
T ss_pred ehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcc
Confidence 88877664322211 011111 11111 12223333 23344344556788899999999876775421
Q ss_pred --CCcc-ceEEEEEeccchHHHHHHHHHHHHhcCceeccC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 285 --DAVE-TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 285 --~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+... -.-+.|++.. ++.+ ++|.++..+++..-.-| +-+++|-++.-.++.++++.+++.+++..+.
T Consensus 298 Ve~~~RS~MNV~Fri~~-d~Le-~eFLkeA~~~~mv~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 298 VEPSVRSRMNVPFRIEK-DELE-AEFLKEAAKEHMVQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred cchhhhhhcccceeecc-hHHH-HHHHHHHHHhhhhccccccccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 1111 2236677765 3333 45555555555433233 3456999998899999999999998877653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0013 Score=49.92 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=39.1
Q ss_pred cCCChHHHHHHHHHHHHh----C--CC---CeE-EcCCchHHHHHHHHHhhhhcCCeEEecCCCcc
Q 018243 34 LMHDPTAFRLETEMAKVM----G--KE---AGL-FVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~~----~--~~---~~~-~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~ 89 (359)
|+...+..++++++++++ | .+ ..+ +++++++++..++..++ .+||.|++++|+|.
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYYA 152 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCCC
Confidence 666677888888888876 3 11 124 44555566667667777 59999999999975
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.65 Score=41.65 Aligned_cols=128 Identities=18% Similarity=0.303 Sum_probs=69.9
Q ss_pred EEecCCCcceeeccccccccCCccceee----ecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTV----KNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v----~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+.++...|.-....+ ++-.|+..+.+ +.+. .|++|.-.+++.+++.-.. .++.++++.-....-.|.
T Consensus 234 ~YiS~alh~~l~hYa--arefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaa---gkkPLilia~iGasi~Gq- 307 (838)
T KOG0630|consen 234 FYISEALHMDLLHYA--AREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAA---GKKPLILIADIGASICGQ- 307 (838)
T ss_pred EEEcccccHHHHHHH--HHHhCCchhheecccccccccccccccHHHHHHHHHHHHhC---CCCCeEEEEeccchhhcc-
Confidence 555555554433211 44456544444 1222 2588999999999863222 234455553333322333
Q ss_pred cChhhHHHHHHHHHHcC-cEEEEecccccchhhhcC-c-hhHhhhcCccEEEEeccccCCCceeeEE
Q 018243 154 LSVEYTDSVGEIAKKHG-LKLHIDGARIFNAAVALG-V-PVRRLVQAADSASVCLSKGLGAPVGSVI 217 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~-~~li~D~a~~~~~~~~~~-~-~~~~~~~~~d~~~~s~~K~~g~~~gg~~ 217 (359)
.+-+-+|.++|+++. .|++.-+.- ..+..+.. . ...-.....|.+.....-|+|.|..-++
T Consensus 308 --nDmi~kildi~eahakfWLHasGha-iAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV 371 (838)
T KOG0630|consen 308 --NDMILKILDICEAHAKFWLHASGHA-IAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIV 371 (838)
T ss_pred --hHHHHHHHHHHHHhhheeEeeccch-hhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceE
Confidence 467899999999997 899887642 11211111 1 1111123456666677778888766333
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.83 E-value=18 Score=28.75 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=69.1
Q ss_pred EcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 58 FVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 58 ~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
+.++=|+.++..+..... .|.+|++..|..-..+..+.+....|.+...+..+ +..++-+.+...... ..+
T Consensus 13 M~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~-----~~~~i~~~i~~~~~~---~~~ 83 (201)
T COG1435 13 MFSGKTEELLRRARRYKE-AGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIP-----SDTDIFDEIAALHEK---PPV 83 (201)
T ss_pred CcCcchHHHHHHHHHHHH-cCCeEEEEecccccccccceeeeccCCcccceecC-----ChHHHHHHHHhcccC---CCc
Confidence 344556777777777664 78889998888766655455566777666655444 334444445432111 226
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~ 177 (359)
.+|.++- -+.++.+-+..+.+++++.|+.+++=+
T Consensus 84 ~~v~IDE------aQF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 84 DCVLIDE------AQFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred CEEEEeh------hHhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 6777743 256778888999999999999999864
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=83.31 E-value=5.4 Score=30.89 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=38.7
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc-----------------eecChhhHHHHHHHHHHcCcEEEEecc
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG-----------------RCLSVEYTDSVGEIAKKHGLKLHIDGA 178 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG-----------------~~~~~~~l~~i~~~~~~~~~~li~D~a 178 (359)
|.+.+.+.++...+ -+...|++.++...+.+ ..-+.++++++++.|+++|+.||+|-+
T Consensus 17 ~~~gi~~~l~yl~~----lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKD----LGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 56666665442111 46778888666544421 112347899999999999999999986
|
|
| >COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.42 E-value=11 Score=33.35 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCC-CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT-MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
+.-++..+++....+.- +... +-++..++.++.+. .+.+.|.+.+++.. .+..++++ +-++ -|...+
T Consensus 92 ~~~l~~~~~r~T~~K~R-v~s~-nQQllRvD~Ee~~~~~~~~~ll~~~~~~l-----~~~~~vVL-SDY~--KG~L~~-- 159 (467)
T COG2870 92 DSDLLRDKNRPTIVKLR-VLSR-NQQLLRLDFEEKFPIEDENKLLEKIKNAL-----KSFDALVL-SDYA--KGVLTN-- 159 (467)
T ss_pred ccceEeecCCCceeeee-eecc-cceEEEecccccCcchhHHHHHHHHHHHh-----hcCCEEEE-eccc--cccchh--
Confidence 34456666666666521 2222 23566666554443 34555555555321 35678888 3333 367655
Q ss_pred hHHHHHHHHHHcCcEEEEe
Q 018243 158 YTDSVGEIAKKHGLKLHID 176 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D 176 (359)
.+.+.++|++.|+++++|
T Consensus 160 -~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 160 -VQKMIDLAREAGIPVLVD 177 (467)
T ss_pred -HHHHHHHHHHcCCcEEEC
Confidence 899999999999999999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 2fm1_A | 355 | Crystal Structure Of L-allo-threonine Aldolase (tm1 | 2e-78 | ||
| 1jg8_A | 347 | Crystal Structure Of Threonine Aldolase (Low-Specif | 2e-78 | ||
| 1lw4_A | 347 | X-Ray Structure Of L-Threonine Aldolase (Low-Specif | 6e-74 | ||
| 3pj0_A | 359 | Crystal Structure Of A Putative L-Allo-Threonine Al | 2e-12 | ||
| 3lws_A | 357 | Crystal Structure Of Putative Aromatic Amino Acid B | 9e-12 | ||
| 3vk2_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 1e-06 | ||
| 1svv_A | 359 | Initial Stuctural Analysis Of Leishmania Major Thre | 4e-06 | ||
| 1gc0_A | 398 | Crystal Structure Of The Pyridoxal-5'-Phosphate Dep | 2e-05 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 2e-05 | ||
| 1v72_A | 356 | Crystal Structure Of Phenylserine Aldolase From Pse | 4e-05 |
| >pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744) From Thermotoga Maritima At 2.25 A Resolution Length = 355 | Back alignment and structure |
|
| >pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity) Length = 347 | Back alignment and structure |
|
| >pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity) In Complex With L-Allo-Threonine Length = 347 | Back alignment and structure |
|
| >pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A Resolution Length = 359 | Back alignment and structure |
|
| >pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta- Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1) FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution Length = 357 | Back alignment and structure |
|
| >pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398 | Back alignment and structure |
|
| >pdb|1SVV|A Chain A, Initial Stuctural Analysis Of Leishmania Major Threonine Aldolase Length = 359 | Back alignment and structure |
|
| >pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From Pseudomonas Putida Length = 356 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347 | Back alignment and structure |
|---|
Score = 482 bits (1243), Expect = e-172
Identities = 168/346 (48%), Positives = 224/346 (64%), Gaps = 7/346 (2%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVTKPTE MR AMA AEV DDV DPT LE A+ GKEA LFVPSGTMG
Sbjct: 6 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N +S++ H + RG EVIL +SHI YE G ++ + GV P V ++G MD D + AI
Sbjct: 66 NQVSIMAHTQ-RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAI 123
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
R I +P T LI +ENTH GGR + +E + IAK+HG+ +HIDGARIFNA++
Sbjct: 124 RPR--NIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 181
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
A GVPV+ ADS CLSKGL APVGSV+VG ++FI++AR+ RK LGGGMRQ GVL
Sbjct: 182 ASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLA 241
Query: 246 AAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
AA ++AL + V + + DH+ A+ LA L ++ G V+ + V+TN+V ++ K+ A
Sbjct: 242 AAGIIALTKMVDRLKE-DHENARFLALKLKEI-GYSVNPEDVKTNMVILRT-DNLKVNAH 298
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351
++ L GVL S T +R+V H +S ND+ L+ F+K++
Sbjct: 299 GFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR 344
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359 | Back alignment and structure |
|---|
Score = 447 bits (1152), Expect = e-158
Identities = 69/348 (19%), Positives = 141/348 (40%), Gaps = 16/348 (4%)
Query: 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM 64
R+ V ++ D+ + ET++AK++GK++ +F PSGTM
Sbjct: 19 GNGPRNVGVLTEA----LQNIDDNLESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTM 74
Query: 65 GNLISVLVHCETR-GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
I++ + + + V SH+ I+E G+ + + P + + + ID I++
Sbjct: 75 AQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLL-GTANQLLTIDDIKS 133
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
+ +E GG+ + E + + E + G+ LH+DGAR++
Sbjct: 134 LREP---------VSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEI 184
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243
+ DS V KG+G G+++ G+ +F+++A+ ++ GG + +
Sbjct: 185 TPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLYP 244
Query: 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303
+A ++ + M + + AK LAE N G++ + +N+ + +
Sbjct: 245 YILSADYYFEKRIGKMAE-YFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEI 303
Query: 304 AACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYA 351
A L K +E GV + + V ++S D +
Sbjct: 304 GAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELV 351
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357 | Back alignment and structure |
|---|
Score = 439 bits (1131), Expect = e-155
Identities = 68/353 (19%), Positives = 125/353 (35%), Gaps = 24/353 (6%)
Query: 1 MVTRTVDLRSDTV-----TKPTEAMR---AAMASAEVDDDVLMHDPTAFRLETEMAKVMG 52
M + T K + A + E+ D E + A V+G
Sbjct: 2 MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG 61
Query: 53 KEAGLFVPSGTMGNLISVLVHCETRGSE--VILGDNSHIHIYENGGISTIGGVHPRTVKN 110
+ +F PSGTM +++ + + V H+ I+E G+ + + V
Sbjct: 62 MDDAVFFPSGTMAQQVALRIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV-G 119
Query: 111 NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170
D M +D I+A P + LE GG + +++ ++ G
Sbjct: 120 AADRLMTLDEIKA----------LPDIACLLLELPQREIGGVAPAFSELETISRYCRERG 169
Query: 171 LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230
++LH+DGAR+F + DS + KGLG G+++ G F + AR
Sbjct: 170 IRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIW 229
Query: 231 RKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN 290
++ GG + + +A + M +++AK LAE N L G+ + +N
Sbjct: 230 KRRYGGDLISLYPYIVSADYYYELRKDRMGQ-YYEQAKQLAEQFNALPGVHTTPEVPVSN 288
Query: 291 IVYFEITEDSKLYAACLLKKLEEHGVLVM-PESSTRVRIVVHHQISANDVHYT 342
+ + + + L + EE G+ + +
Sbjct: 289 MFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELD 341
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Length = 356 | Back alignment and structure |
|---|
Score = 344 bits (885), Expect = e-118
Identities = 69/351 (19%), Positives = 134/351 (38%), Gaps = 18/351 (5%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMGKEAGLF-VPSGT 63
+ SD + + + A+ D +++ + ++ ++ +F VP+GT
Sbjct: 10 LGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGT 69
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
N + + + SHI+ E G + +DI +
Sbjct: 70 AANALCLSAMTP-PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRE 128
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
R+ G+ TT+ C+ T A G +++ +++G++ K L LH+DG+R NA
Sbjct: 129 RTREKVGD--VHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANA 186
Query: 184 AVALGVPVRRLVQAA--DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQV 241
V+LG + A D+ S +K ++++ + + RK G ++
Sbjct: 187 LVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKM 246
Query: 242 GVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300
L A L +++ L + A+ LA+GL L G+ V E NI++ +
Sbjct: 247 RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-TEANILFCRLDSA- 304
Query: 301 KLYAACLLKKLEEHG--VLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349
++ L + G VR V +A DV + L+ +
Sbjct: 305 ------MIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 349
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-107
Identities = 65/353 (18%), Positives = 131/353 (37%), Gaps = 17/353 (4%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMGKEA--GLFVPSG 62
+D + MA + D + + +++ + F+ G
Sbjct: 16 YSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGG 75
Query: 63 TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIE 122
T NLI+ + VI HI +E G I G H DG + + IE
Sbjct: 76 TQTNLIACSLALR-PWEAVIATQLGHISTHETGAIEATG--HKVVTAPCPDGKLRVADIE 132
Query: 123 AAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFN 182
+A+ + +L+ + NT G + + + + K+HGL L +DGAR+ +
Sbjct: 133 SALHEN-RSEHMVIPKLVYISNTTEV--GTQYTKQELEDISASCKEHGLYLFLDGARLAS 189
Query: 183 AAVALGVPVR--RLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240
A + + + + D + +K G ++I+ + AR L K G M +
Sbjct: 190 ALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAK 249
Query: 241 VGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED 299
+L V +++N+ + +K A +L GL G+R+ +N ++ +
Sbjct: 250 GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA-CGIRLAWP-SASNQLFPILENT 307
Query: 300 SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352
A L + + V + + + +R+ + H + +++ A
Sbjct: 308 M---IAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 8e-83
Identities = 63/358 (17%), Positives = 119/358 (33%), Gaps = 53/358 (14%)
Query: 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+DL +D+ T T++M+AAM D+ + + L + + G + + G
Sbjct: 43 FIDLLTDSGTGAVTQSMQAAMMRG---DEAYSGSRSYYALAESVKNIFGYQYTIPTHQGR 99
Query: 64 MGNLISVLVHCETRGSEVILGDN-----SHIHIYENGGISTIGGVHPRTVKNNQ------ 112
I + V + R E L + S+ G S I G R V +
Sbjct: 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGV 159
Query: 113 ----DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168
G D++ +E I + I T + GG+ +S+ ++ IAKK
Sbjct: 160 RYDFKGNFDLEGLERGIEEVG----PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215
Query: 169 HGLKLHIDGARIFNAA------------VALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
+ + + +D AR A + R + AD ++ K P+G +
Sbjct: 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGL 275
Query: 217 IVGSKE-FIKKARRLRKTLG--GGMRQVGVLCAAALVALQENVLVMLD-----GDHKKAK 268
+ + F R G G L A+ L + ++ + +
Sbjct: 276 LCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQ 335
Query: 269 LLAEGLNQLKGLRVDVDAVETNIVYFE-------ITEDSKLYAACLLKKLEEHGVLVM 319
L +GL ++ V + + + I D A + + G+ +
Sbjct: 336 YLVDGLEEIG---VVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAV 390
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 182 bits (462), Expect = 2e-53
Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 44/352 (12%)
Query: 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+DL +D+ T ++ AAM + D+ + L+ + ++ + + G
Sbjct: 45 YIDLLTDSGTNAMSDHQWAAMITG---DEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGR 101
Query: 64 MGNLISVLVHC-----ETRGSEVILGDNSHI-----HIYENGGI---STIGGVHPRTVKN 110
I V E + + N H H+ NG +
Sbjct: 102 GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYD 161
Query: 111 NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170
+ G DI ++ I + + I T + GG+ +S+ V EIAK+HG
Sbjct: 162 DWKGDFDIKKLKENIAQHGADNI----VAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217
Query: 171 LKLHIDGARIFNAAVA------------LGVPVRRLVQAADSASVCLSKGLGAPVGSVI- 217
+ + +D AR A + + + + AD+ ++ K +G ++
Sbjct: 218 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVA 277
Query: 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLD-----GDHKKAKLLAE 272
+ E I R R G G L + A+ + + + + K L +
Sbjct: 278 IRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD 337
Query: 273 GLNQLKGLRVDVDA-----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVM 319
L + V+ + +I D A + E GV +
Sbjct: 338 RLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV 389
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-53
Identities = 55/344 (15%), Positives = 114/344 (33%), Gaps = 35/344 (10%)
Query: 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM 64
+DL +D+ T + A + D+ + LE + ++ G + + G
Sbjct: 44 YIDLLTDSGTNAMSDKQ--WAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRG 101
Query: 65 GNLISVLVHCETRGSEVILG---DNSHIHIYENGGI---STIGGVHPRTVKNNQDGTMDI 118
+ + + G V + H +NG + H + G +D+
Sbjct: 102 AENLLSQLAIK-PGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDL 160
Query: 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA 178
++ I + E + ICL T GG+ +S+ +V E+ + HG+K+ D
Sbjct: 161 KKLQKLIDEKGAENI----AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
Query: 179 RIFNAAVA------------LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKK 226
R A + V + AD ++ K +G + + + +
Sbjct: 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFS 276
Query: 227 ARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGD-----HKKAKLLAEGLNQLKGLR 281
+ + + GM G L + A+ + + + K+ + L + L
Sbjct: 277 SAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPI 336
Query: 282 VDVDA-----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
V+ ++ +T+D + E GV M
Sbjct: 337 VEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSME 380
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 34/201 (16%)
Query: 38 PTAFRLETEMAKVMGKEAGL------FVPSGTMGNLISVLV-------HCETRGSE---- 80
P +E E+ + + G F P G++ N+ +V + C+ RG
Sbjct: 144 PVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPP 203
Query: 81 -VILG-DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138
+ H I + +G R VK ++ G M + +E I + E P
Sbjct: 204 LALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPF-- 261
Query: 139 LICLENTHANCG--GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-- 194
L+ A G + + +++ ++ ++HGL LH+D A + +V L R L
Sbjct: 262 LVS-----ATSGTTVLG-AFDPLEAIADVCQRHGLWLHVDAA--WGGSVLLSQTHRHLLD 313
Query: 195 -VQAADSASVCLSKGLGAPVG 214
+Q ADS + K L A +
Sbjct: 314 GIQRADSVAWNPHKLLAAGLQ 334
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 40/223 (17%)
Query: 38 PTAFRLETEMAKVMGKEAGL--------FVPSGTMGNLISVLV-------HCETRGSE-- 80
P +E K M + G F P G + N+ S++ +T+G
Sbjct: 128 PVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAV 187
Query: 81 ---VILG-DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136
V+ + SH I + G G + +K N+ G + EA I + K + P
Sbjct: 188 PKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPF 247
Query: 137 TRLICLENTHANCG--GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194
+ A G + + + +I +K+ L LH+D A + + + R
Sbjct: 248 --YVN-----ATAGTTVYG-AFDPIQEIADICEKYNLWLHVDAA--WGGGLLMSRKHRHK 297
Query: 195 ---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTL 234
++ A+S + K +G + + +K+ L+
Sbjct: 298 LNGIERANSVTWNPHKMMGVLLQCSAI----LVKEKGILQGCN 336
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 65/392 (16%), Positives = 120/392 (30%), Gaps = 115/392 (29%)
Query: 38 PTAFRLETEMAKVMGKEAGL-------FVPSGTMGNLISVLV------------HCETRG 78
+A +E ++ + + L F GT N + +++ + G
Sbjct: 136 SSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLG 195
Query: 79 SEVILG-------DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGE 131
SH + ++ +G TV N DGTMDI ++ I K E
Sbjct: 196 LPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAE 255
Query: 132 IVYPTTRLICLENTHANCGGRCLSVEYTDS--------VGEIAKKHGLKLHIDGARIFNA 183
+ P I G TD + ++A KH + +H+DGA +
Sbjct: 256 GLIPF--AIV-----GTAGT-------TDHGAIDDLDFIADMAVKHDMWMHVDGA--YGG 299
Query: 184 AVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLR--------- 231
A+ L + V+ A S SV K + + + +
Sbjct: 300 ALILS-SHKSRLKGVERAHSISVDFHKLFYQTISCGAL----LVNDKSNFKFLLHHADYL 354
Query: 232 ------------KTLGGG-----------MRQVGVLCAAALVALQENVLVMLDGDHKKAK 268
K++ M+ VG AL + M D +
Sbjct: 355 NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP------KALGD----MYDHLLAQTL 404
Query: 269 LLAEGLNQLKGLRVDVDAVETNIVYF----EITEDSKLYAACLLKKLEEHGVLVMPESST 324
+A+ + + + + V F E + +L A L + G+ V+ T
Sbjct: 405 EVADMIRTNDQFEL-LAEPSLSTVLFRATHETADLDELNKA-LRLEALTRGIAVL--GET 460
Query: 325 RVR-------IVVHHQISANDVHYTLSCFQKI 349
V +++ ++ +D LS +
Sbjct: 461 IVDGKTALKFTILNPCLTTSDFESLLSKINML 492
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 57/387 (14%), Positives = 117/387 (30%), Gaps = 99/387 (25%)
Query: 34 LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV------------HCETRGSE- 80
++ P F + G+ + + LI++L + S
Sbjct: 130 MLGLPEHFLHHHPS----SQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185
Query: 81 ----VILG-DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135
V D +H + + G I V + + + + ++ + ++ AI + K + P
Sbjct: 186 NARLVAYASDQAHSSVEKAG---LISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVP 242
Query: 136 TTRLICLENTHANCG--GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193
+C A G G C + + +G I + GL LHID A + L R
Sbjct: 243 V--FVC-----ATLGTTGVC-AFDCLSELGPICAREGLWLHIDAA--YAGTAFLCPEFRG 292
Query: 194 L---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGG------------- 237
++ ADS + SK + ++K +L++T
Sbjct: 293 FLKGIEYADSFTFNPSKWMMVHFDCTGF----WVKDKYKLQQTFSVNPIYLRHANSGVAT 348
Query: 238 ---------------------MRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQ 276
+R GV LQ + + AK +
Sbjct: 349 DFMHWQIPLSRRFRSVKLWFVIRSFGV------KNLQA----HVRHGTEMAKYFESLVRN 398
Query: 277 LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVR-------IV 329
+ +V F + + L +LK++ + G L + ++ V
Sbjct: 399 DPSFEI-PAKRHLGLVVFRLKGPNSLTEN-VLKEIAKAGRLFL--IPATIQDKLIIRFTV 454
Query: 330 VHHQISANDVHYTLSCFQKIYAGVCEE 356
+ +D+ + + + +
Sbjct: 455 TSQFTTRDDILRDWNLIRDAATLILSQ 481
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 61/401 (15%), Positives = 116/401 (28%), Gaps = 111/401 (27%)
Query: 35 MHDPTAFRLETEMAKVMGKEAGL---------------FVPSGTMGNLISVLV------- 72
+ P LE M +GK L + + L+++L
Sbjct: 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK 165
Query: 73 -----HCETRGSE------VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLI 121
H E D +H + G +GGV R+V++ + M +
Sbjct: 166 EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAG---LLGGVKLRSVQSE-NHRMRGAAL 221
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCG--GRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179
E AI E + P G C + +Y D G + KH L +H+D A
Sbjct: 222 EKAIEQDVAEGLIPF--YAV-----VTLGTTNSC-AFDYLDECGPVGNKHNLWIHVDAA- 272
Query: 180 IFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLG- 235
+ + + R L +++ADS + K + + ++K +
Sbjct: 273 -YAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAM----WLKDPSWVVNAFNV 327
Query: 236 ----------GG-----------------------MRQVGVLCAAALVALQENVLVMLDG 262
G +R GV LQ +
Sbjct: 328 DPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGV------ENLQA----HIRR 377
Query: 263 DHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES 322
AK + + + +V F + ++ A LLK++ G + +
Sbjct: 378 HCNFAKQFGDLCVADSRFEL-AAEINMGLVCFRLKGSNERNEA-LLKRINGRGHIHL--V 433
Query: 323 STRVR-------IVVHHQISANDVHYTLSCFQKIYAGVCEE 356
+++ + + D+ Y+ + +E
Sbjct: 434 PAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 474
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 60/390 (15%), Positives = 105/390 (26%), Gaps = 112/390 (28%)
Query: 35 MHDPTAFRLETEMAKVMGKEAGL---------------FVPSGTMGNLISVLV------- 72
P LET M +GK L S + L+++L
Sbjct: 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165
Query: 73 -----HCETRGSE------VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLI 121
D +H + G IGGV + + ++ M +
Sbjct: 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAG---LIGGVKLKAIPSDGKFAMRASAL 222
Query: 122 EAAIRDPKGEIVYPTTRLICLENTHANCG--GRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179
+ A+ K + P + A G C S + VG I + + LH+D A
Sbjct: 223 QEALERDKAAGLIPF--FVV-----ATLGTTSCC-SFDNLLEVGPICHEEDIWLHVDAA- 273
Query: 180 IFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGG 236
+ + + R L V+ ADS + K L + ++K+ L
Sbjct: 274 -YAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAM----WVKRRTDLTGAFKL 328
Query: 237 G------------------------------------MRQVGVLCAAALVALQENVLVML 260
R GV LQ +
Sbjct: 329 DPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV------KGLQA----YI 378
Query: 261 DGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
+ + + Q V V +V F + L A LL+++ + +
Sbjct: 379 RKHVQLSHEFEAFVLQDPRFEV-CAEVTLGLVCFRLKGSDGLNEA-LLERINSARKIHL- 435
Query: 321 ESSTRVR-------IVVHHQISANDVHYTL 343
R+R + ++ + V
Sbjct: 436 -VPCRLRGQFVLRFAICSRKVESGHVRLAW 464
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-09
Identities = 43/249 (17%), Positives = 86/249 (34%), Gaps = 16/249 (6%)
Query: 42 RLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCETR--GSEVILGDNSHIHIYENGGIS 98
++ K +G + P T ++ L + + VI SH +
Sbjct: 137 KILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV 196
Query: 99 TIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158
+ TV + + ++ IE AI+ C+ +T R + +
Sbjct: 197 GMNMRLVETVLDGDRVYVPVEDIENAIKKEIEL-----GNRPCVLSTLTFFPPR--NSDD 249
Query: 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIV 218
+ +I + + + I+GA L + D+ K L P+G +V
Sbjct: 250 IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLV 309
Query: 219 GSKEFIKKARRLRKTLGGGMRQVGVLCA-AALVAL-QENVLVMLDGDHKKAKLLAEGLNQ 276
S + + + + + G V+ +L+++ +N L ++ KLL E LN
Sbjct: 310 YSTD-AEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 368
Query: 277 L---KGLRV 282
L G +
Sbjct: 369 LSKKTGGKF 377
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 42/317 (13%), Positives = 94/317 (29%), Gaps = 57/317 (17%)
Query: 56 GLFVPSGTMGNLISVLVH----CETRGS---EVILGDNSHIHIYENGGISTIGGVHPRTV 108
G GT L+++ + T+G E ++ ++H + + G+
Sbjct: 163 GTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK---AAQYFGIKLVRT 219
Query: 109 KNNQDGTMDIDLIEAAIRDPKGEIV--YPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166
+ D D+ + AI + P ++ + +A
Sbjct: 220 PLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPE--------------IAALA 265
Query: 167 KKHGLKLHIDGARIFNAAV---ALGVPVRRL---VQAADSASVCLSKGLGAPVGS--VIV 218
+HG+ H+D LG PV ++ S S K G+ ++
Sbjct: 266 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325
Query: 219 GSKEFIKKARRLRKT-LGGGMRQVGVLC--AAALVALQENVLVML---------DGDHKK 266
+ + + GG AL A ++ L +
Sbjct: 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQA 385
Query: 267 AKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----MPES 322
A L G+ + L++ D ++ +++ +Y +++++ G + P +
Sbjct: 386 ADRLKAGVRAIPSLKILGD--PLWVIAVA-SDELNIYQ--VMEEMAGRGWRLNGLHRPPA 440
Query: 323 STRVRIVVHHQISANDV 339
+ V
Sbjct: 441 FH--VALTLRHTEPGVV 455
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 30/202 (14%)
Query: 43 LETEMAKVMGKEAGLFVP---SGTMGNLISVLVHCETRGSEVI-LGDNSHIHIYENGGIS 98
LE A V EA L P SG + +VL E++ + + + E GI
Sbjct: 64 LERVYATVFKTEAALVRPQIISG-THAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122
Query: 99 TIG-------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151
G + +V ++G +D I + P T++I ++ +
Sbjct: 123 KQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT--------PKTKMIGIQRSRGYADR 174
Query: 152 RCLSVEYTDSVGEIAKKHG--LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL 209
++E + K + + +D N AD + L K
Sbjct: 175 PSFTIEKIKEMIVFVKNINPEVIVFVD-----NCYGEFVEYQEPPEVGADIIAGSLIKNP 229
Query: 210 G---APVGSVIVGSKEFIKKAR 228
G A G I G + +
Sbjct: 230 GGGLAKTGGYIAGKEALVDLCG 251
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 44/224 (19%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN--G 95
+ + + +G L + L G+ ++ + G
Sbjct: 76 DSLDAVYARVFNTESALVRPHFVNG-THALGAALFGNLRPGNTMLSVCGEPYDTLHDVIG 134
Query: 96 GISTIG-------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148
G++ + V +DG +++ IE ++ + + +
Sbjct: 135 ITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK--------EDESITLVH-IQRS 185
Query: 149 CGGRCLSVEYTDSVGEIAK--------KHGLKLHIDGARIFNAAVALGVPVRR---LVQA 197
G + +I + + +D N G +
Sbjct: 186 TG---YGWRRALLIEDIKSIVDCVKNIRKDIICFVD-----NC---YGEFMDTKEPTDVG 234
Query: 198 ADSASVCLSKGLG---APVGSVIVGSKEFIKKARRLRKTLGGGM 238
AD + L K +G AP G + G+K+ I+K G G
Sbjct: 235 ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGG 278
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 31/142 (21%)
Query: 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCET------RGSEVILGDNSHIH----I 91
+ ET+ AK G + + V SG+ NL+ + T +G E+I+ S +
Sbjct: 38 QYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL 97
Query: 92 YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151
+ G + T +DI+ ++ A+ +T+ I N G
Sbjct: 98 QQYGLRVKFVDIDINT------LNIDIESLKEAVT--------DSTKAILT----VNLLG 139
Query: 152 RCLSVEYTDSVGEIAKKHGLKL 173
+ D + +I + L
Sbjct: 140 --NPNNF-DEINKIIGGRDIIL 158
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 27/214 (12%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI-LGDNSHIHIYENGG 96
T ++ ++ + SG + + L G E++ + + + E G
Sbjct: 68 DTLEKVYADVFGAEAGLVRPQIISG-THAISTALFGILRPGDELLYITGKPYDTLEEIVG 126
Query: 97 ISTIG-------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149
+ G + V + G +D + + AAI T++I ++ +
Sbjct: 127 VRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH--------SNTKMIGIQRSKGYA 178
Query: 150 GGRCLSVEYTDSVGEIAK--KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSK 207
++ + K K + + +D + + P AD + L K
Sbjct: 179 TRPSFTISQIKEMIAFVKEIKPDVVVFVDNC--YGEFIEEQEP---CHVGADLMAGSLIK 233
Query: 208 GLG---APVGSVIVGSKEFIKKARRLRKTLGGGM 238
G G IVG +++++ + G G
Sbjct: 234 NPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGA 267
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 51/217 (23%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97
PT E + + G A SG M + + L G ++ + ++ G
Sbjct: 81 PTVSVFEERLRLIEGAPAAFATASG-MAAVFTSLGALLGAGDRLVAARS----LF--GS- 132
Query: 98 STIG---------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148
GV V DG D+ E A+ T+ + E T +N
Sbjct: 133 -CFVVCSEILPRWGVQTVFV----DGD-DLSQWERALS--------VPTQAVFFE-TPSN 177
Query: 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAAD----SAS 202
+ + +V E+A G K+ +D N P+ + D S +
Sbjct: 178 PMQSLVDIA---AVTELAHAAGAKVVLD-----N---VFATPLLQQGFPLGVDVVVYSGT 226
Query: 203 VCLSKGLGAPVGSVIVGSKEFIKKARR-LRKTLGGGM 238
+ G G +G I+G +E+I + L + G M
Sbjct: 227 KHID-GQGRVLGGAILGDREYIDGPVQKLMRHTGPAM 262
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 52/218 (23%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97
PT LE ++A + EAGL SG + + + L+ +G ++ IY G
Sbjct: 64 PTTDALEKKLAVLERGEAGLATASG-ISAITTTLLTLCQQGDHIVSASA----IY--GC- 115
Query: 98 STIG---------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148
T G++ R V D + I AA+R P T+++ +E T AN
Sbjct: 116 -THAFLSHSMPKFGINVRFV----DAA-KPEEIRAAMR--------PETKVVYIE-TPAN 160
Query: 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFN--AAVALGVPVRRLVQAAD----SAS 202
+ +E +V IA + G L +D N + P L AD S +
Sbjct: 161 PTLSLVDIE---TVAGIAHQQGALLVVD-----NTFMSPYCQQP---LQLGADIVVHSVT 209
Query: 203 VCLSKGLGAPVGSVIVGSKEFIKKAR--RLRKTLGGGM 238
++ G G +G +IVG +EFI +AR L+ GG M
Sbjct: 210 KYIN-GHGDVIGGIIVGKQEFIDQARFVGLKDITGGCM 246
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 43/209 (20%)
Query: 52 GKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIG-GVHPRTVKN 110
+ + +++ ++ + + H +
Sbjct: 75 ENDKCVGFNRT-SSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYFESD--- 129
Query: 111 NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170
+ I I T +I +T + + + +E V AK
Sbjct: 130 ------KVGEILNKID--------KDTLVIITGST-MD--LKVIELENFKKVINTAKNKE 172
Query: 171 LKLHID---GARIF-----NAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE 222
+ +D GAR+ A+ LG AD K + P G ++ G KE
Sbjct: 173 AIVFVDDASGARVRLLFNQPPALKLG---------ADLVVTSTDKLMEGPRGGLLAGKKE 223
Query: 223 FIKKARRLRKTLGGGMRQVGVLCAAALVA 251
+ K G + A +
Sbjct: 224 LVDKIYIEGTKFGL---EAQPPLLAGIYR 249
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 47/213 (22%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT LE +++ + G E+ L + SG M +L+ G ++ + Y
Sbjct: 114 PTTVVLEEKISALEGAESTLLMASG-MCASTVMLLALVPAGGHIVTTTD----CY--RKT 166
Query: 97 ---ISTI---GGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
I TI G+ + D+ +E A+ K L E + N
Sbjct: 167 RIFIETILPKMGITATVID-----PADVGALELALNQKK-------VNLFFTE-SPTNPF 213
Query: 151 GRCLSVEYTDSVGEIAKKHGLKLHIDG---ARIFNAAVALGVPVRRLVQAAD----SASV 203
RC+ +E V ++ + G + IDG + A+ALG AD SA+
Sbjct: 214 LRCVDIE---LVSKLCHEKGALVCIDGTFATPLNQKALALG---------ADLVLHSATK 261
Query: 204 CLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGG 236
L G + I G + + + R L LGG
Sbjct: 262 FLG-GHNDVLAGCISGPLKLVSEIRNLHHILGG 293
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 54/377 (14%), Positives = 119/377 (31%), Gaps = 93/377 (24%)
Query: 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETE----MAKVMGKE--AGLFVPSGTMGNLISV 70
+ + + + D + LE + + ++ + G V GT NL+++
Sbjct: 47 RKIVDIFLETNLGDPGL---FKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMAL 103
Query: 71 LVH------------CETRGSEVILGDNSHI------HIYENGGISTIGGVHPRTVKNNQ 112
+ ++I+ +H + + +
Sbjct: 104 RCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---------DLEYIYAPIKE 154
Query: 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG----GRCLSVEYTDSVGEIAKK 168
D T+D ++ A+ D I G G +++ + + +IAK+
Sbjct: 155 DYTIDEKFVKDAVEDY-------DVDGII-----GIAGTTELG---TIDNIEELSKIAKE 199
Query: 169 HGLKLHIDGARIFNAAVALGVPVRRLVQA----------ADSASVCLSKGLGAPVGS--V 216
+ + +H+D A F V + + + DS ++ K P+ S +
Sbjct: 200 NNIYIHVDAA--FGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI 257
Query: 217 IVGSKEFIKKARRLRKTLGGGM-------RQVG--VLCAAALVAL-QENVLVMLDGDHKK 266
+ + + L R A L L +E +++ +
Sbjct: 258 LFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMEN 317
Query: 267 AKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV----MPES 322
L + L + + ++ NIV E + ++ KKL + G+ V ++
Sbjct: 318 TLYLYKKLKEN-NFKPVIEP-ILNIVAIEDEDYKEVC-----KKLRDRGIYVSVCNCVKA 370
Query: 323 STRVRIVVHHQISANDV 339
+RIVV I +
Sbjct: 371 ---LRIVVMPHIKREHI 384
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 36/148 (24%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT LE+ +AK+ + SG M +S + H G E++ GD+ +Y GG
Sbjct: 133 PTRDALESLLAKLDKADRAFCFTSG-MAA-LSAVTHLIKNGEEIVAGDD----VY--GGS 184
Query: 97 ------ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
+ GV + V T +D + AAI P T+L+ LE + N
Sbjct: 185 DRLLSQVVPRSGVVVKRVN-----TTKLDEVAAAIG--------PQTKLVWLE-SPTN-- 228
Query: 151 GRCLSVEYTD--SVGEIAKKHGLKLHID 176
+ +D + E+A G + +D
Sbjct: 229 -PRQQI--SDIRKISEMAHAQGALVLVD 253
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 43/248 (17%), Positives = 85/248 (34%), Gaps = 24/248 (9%)
Query: 47 MAKVMGKEAGLFVPSGTMGNL---ISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGV 103
+A V + VP T +L L H + +I ++ + T G
Sbjct: 110 LAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK--SMVTAG-F 166
Query: 104 HPRTVKNNQDG---TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160
P ++N +G D+ +EA I++ ++CL +T A R + +
Sbjct: 167 EPVVIENVLEGDELRTDLKAVEAKIQE------LGPEHILCLHSTTACFAPR--VPDRLE 218
Query: 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-VQAADSASVCLSKGLGAPVGSVIVG 219
+ I + + ++ A ++ + + + V D+ L K PVG I+
Sbjct: 219 ELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 278
Query: 220 S--KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQL 277
+ FI+ ++ + VL L +L + L+ L +L
Sbjct: 279 GFNEPFIQDISKMYPGRASASPSLDVL-ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL 337
Query: 278 ---KGLRV 282
R+
Sbjct: 338 AEAHNERL 345
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 50/375 (13%), Positives = 101/375 (26%), Gaps = 73/375 (19%)
Query: 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM-----------GKEAGLFVPSGTMG 65
+ + +++ VD D P L+ ++ G+ +
Sbjct: 73 DKLIMSSINKNYVDMDE---YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEA 129
Query: 66 NLISVLVHCE------------TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD 113
+++ L ++ G N + + V + VK ++
Sbjct: 130 IMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEG 186
Query: 114 G-TMDIDLIEAAIRDPKGEIV--YPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170
MD + + + +T E+ L VE
Sbjct: 187 YYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLN---DLLVEK-----NKETGWD 238
Query: 171 LKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKA 227
+H+D A P + S +V K G V +
Sbjct: 239 TPIHVDAA-SGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV----IWRNK 293
Query: 228 RRLRKT-------LGGGMRQVGVLC--AAALVALQENVLVML--DG-------DHKKAKL 269
L + LG + ++ V Q L+ L +G + +
Sbjct: 294 EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIV 353
Query: 270 LAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHG----VLVMPESSTR 325
L EGL + + + +V F + + S + L +G MP ++
Sbjct: 354 LREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQH 413
Query: 326 V---RIVVHHQISAN 337
+ R+V+ S
Sbjct: 414 ITVLRVVIREDFSRT 428
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 16 PTEAMRAAMASAEVDDDVLMH---DPTAFRLETEMAKVMGKEAGLFVPSG--TMGN---- 66
P+EA+ A + + ++ + A L E+A + K+ G+ V N
Sbjct: 44 PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNE 103
Query: 67 LISVLVH-CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
++ L+ G + S+ ++ ++ V D +D+D+ I
Sbjct: 104 ILQQLLQAFGGPGRTALGFQPSYS-MHPI--LAKGTHTEFIAVSRGADFRIDMDVALEEI 160
Query: 126 RDPKGEIVY 134
R + +IV+
Sbjct: 161 RAKQPDIVF 169
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 56/245 (22%)
Query: 102 GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161
+ + Q +D I + G I N G ++ E
Sbjct: 155 RPNIELLPEGQFK-YHVDFEHLHIGEETGMICVSR---------PTNPTGNVITDEELMK 204
Query: 162 VGEIAKKHGLKLHID---GARIFNAAVALGVPVRRLVQAADSASVCL----SKGLGAP-- 212
+ +A +H + L ID G + R L + ++ L SK LG P
Sbjct: 205 LDRLANQHNIPLVIDNAYGVPFPGIIFS---EARPL----WNPNIILCMSLSK-LGLPGS 256
Query: 213 -VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA------AALVALQENVL------VM 259
G +I+ + + I M + L ++ N L V+
Sbjct: 257 RCG-IIIANDKTITAIAN--------MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVI 307
Query: 260 LDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNI---VYFEITEDSKLYAACLLKKLEEHG 315
+++ + + + L R + E I ++F+ + L ++L+ G
Sbjct: 308 KPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPIT---TELLYQRLKARG 364
Query: 316 VLVMP 320
VL++P
Sbjct: 365 VLMVP 369
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 56/228 (24%)
Query: 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHI 175
D++ + IR PTT++IC+ N N G + Y + + EIA + G +
Sbjct: 142 PDLEKLRQLIR--------PTTKMICI-NNANNPTGAVMDRTYLEELVEIASEVGAYILS 192
Query: 176 DGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV-------------IVGSKE 222
D ++ R + D S+ G V S+ + + +
Sbjct: 193 D--EVY----------RSFSEL-DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQ 239
Query: 223 FIKKARRLRKTLGGGMRQVGVLCA------AALVAL---QENVLVMLDGDHKKAKLLAEG 273
R R ++CA A +AL QE + + +L +
Sbjct: 240 VTDILRDYR--------DYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQW 291
Query: 274 LNQLKGLRVDV-DAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
+ + + V T+ V + + + LL +EHGVL++P
Sbjct: 292 IEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLL---QEHGVLLVP 336
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT LE MA + G EAGL + SG MG + S L G EV+LG+ +Y G
Sbjct: 65 PTLNLLEARMASLEGGEAGLALASG-MGAITSTLWTLLRPGDEVLLGNT----LY--GCT 117
Query: 97 ISTIGGVHPRT-VKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155
+ + VK D+ +EAA+ P TR+I E + AN
Sbjct: 118 FAFLHHGIGEFGVKLRHVDMADLQALEAAMT--------PATRVIYFE-SPANPNMHMAD 168
Query: 156 VEYTDSVGEIAKKHGLKLHID 176
+ V +IA+KHG + +D
Sbjct: 169 IA---GVAKIARKHGATVVVD 186
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 40/212 (18%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97
T F L+ M ++ G + P G + + ++ +G V++ + YE
Sbjct: 82 LTHFSLQQAMCELEGGAGCVLFPCG-AAAVANSILAFIEQGDHVLMTNT----AYE-PSQ 135
Query: 98 STIGGVHPRT-VKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
+ + V + + I ++ P T+++ LE + + +++
Sbjct: 136 DFCSKILSKLGVTTSWFDPLIGADIVKHLQ--------PNTKIVFLE-SPGS-----ITM 181
Query: 157 EYTD--SVGEIAKK--HGLKLHID---GARIFNAAVALGVPVRRLVQAADSASVCLSKGL 209
E D ++ + + ID A + A+ G+ V +QAA +K L
Sbjct: 182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDV--SIQAA-------TKYL 232
Query: 210 GA---PVGSVIVGSKEFIKKARRLRKTLGGGM 238
+ V + ++ R +G +
Sbjct: 233 VGHSDAMIGTAVCNARCWEQLRENAYLMGQMV 264
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 75/329 (22%)
Query: 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN----LISVLVH 73
A R A+ A L ++A EA + + I +
Sbjct: 36 AAARDAVVKAN-----RYAKNEILMLGNKLAAHHQVEAPSIL----LTAGSSEGIRAAIE 86
Query: 74 CETR-GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRD-PKGE 131
+++++ + ++ E+ + I G+ VK + DI+ ++AA+
Sbjct: 87 AYASLEAQLVIPELTYG-DGEH--FAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPS 143
Query: 132 IVY------PTTRLIC---LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI-F 181
IVY PT + +E A+ + + +D A F
Sbjct: 144 IVYLVNPNNPTGTITPADVIEPWIASKPANTMFI------------------VDEAYAEF 185
Query: 182 NAAVALGVPVRRLVQAADSASVC--LSK--GL-GAPVGSVIVGSKEFIKKARRLRKTLGG 236
+ Q A++ + SK + G VG + I R
Sbjct: 186 VNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV-AHPTVIALMGRYVAGEK- 243
Query: 237 GMRQVGVL-CAAALVALQENVLVMLDGDHKKA--KLLAEGLNQ----LKGLRVDVDAVET 289
+ AAL ++ D K L+ L++ E
Sbjct: 244 ----INFSGVDAALASMN-------DSAFITYSKKSNDVSRQILLKALEDLKLPYLPSEG 292
Query: 290 NIVYFEITEDSKLYAACLLKKLEEHGVLV 318
N V+ ++ K Y + + GVL+
Sbjct: 293 NFVFHQLVVPLKDYQT----HMADAGVLI 317
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Length = 424 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 50/252 (19%), Positives = 74/252 (29%), Gaps = 66/252 (26%)
Query: 112 QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D D + AA+ P T + H GR + D + ++A +HGL
Sbjct: 122 DTGNLDPDQVAAAVT--------PRTSAVVG--VH--LWGRPCAA---DQLRKVADEHGL 166
Query: 172 KLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLS----KGLGAPVGSVIV-GSKEFI 224
+L F+AA ALG V R D+ S K + A G +V +
Sbjct: 167 RL------YFDAAHALGCAVDGRPAGSLGDAE--VFSFHATKAVNAFEGGAVVTDDADLA 218
Query: 225 KKARRLRKTLGGGMRQ------VGV------LCAAALVALQENVLVMLDGDHKK----AK 268
+ R L G G AA + L +
Sbjct: 219 ARIRALH---NFGFDLPGGSPAGGTNAKMSEAAAAMGLT----SLDAFPEVIDRNRRNHA 271
Query: 269 LLAEGLNQLKGLR--VDVDAVETNIVYFEITEDSKLYAAC---LLKKLEEHGVLVMPESS 323
E L L G+ N Y + D +++ L+ GV
Sbjct: 272 AYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGV------H 325
Query: 324 TRV--RIVVHHQ 333
TR H
Sbjct: 326 TRAYFSPGCHEL 337
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 30/226 (13%)
Query: 31 DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90
+L H E A+V G + V GT G+ +++ C T V++ N H
Sbjct: 198 GSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKS 257
Query: 91 IYENGGISTIGGVHPRTVKNNQDGT----------MDIDLIEAAIR--DPKGEIVYPTTR 138
I G+ + G P + +++ M + ++ I +
Sbjct: 258 IE--QGL-MLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPS 314
Query: 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA--------RIFNAAVALGVP 190
+ T+ G C + + ++ +K +LH D A I+ A+
Sbjct: 315 YCVV--TNCTYDGVCYNAK---EAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGE 369
Query: 191 VRRLVQAADSASVCLSKGLGAPV-GSVI-VGSKEFIKKARRLRKTL 234
A+ K L A S I V R +
Sbjct: 370 PGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY 415
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 37/316 (11%), Positives = 106/316 (33%), Gaps = 62/316 (19%)
Query: 47 MAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIG----- 101
+ K +G + + + + + V++ +N H + S+
Sbjct: 63 LPKFLGCDVARVTNGAREAKFAVMHSLAK-KDAWVVMDENCH-Y-------SSYVAAERA 113
Query: 102 GVHPRTVKNNQDGTMDID------LIEAAIRDPKGEIVYPTTRLICLENTHA-NCGGRCL 154
G++ V I IE + + + T + G
Sbjct: 114 GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT---------YPDGNYGNLP 164
Query: 155 SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-VQAADSASVCLS--KGLGA 211
V+ + ++ ++ + L ++GA + + ++ + + S K + A
Sbjct: 165 DVK---KIAKVCSEYDVPLLVNGAY--------AIGRMPVSLKEIGADFIVGSGHKSMAA 213
Query: 212 P-VGSVIVGSKEFIKKARRLRKTLGGGMRQV---------GVLCAAALVALQENVLVMLD 261
V+ +E+ + R + ++ + A+ ++E + D
Sbjct: 214 SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIK-RWD 272
Query: 262 GDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF------EITEDSKLYAACLLKKLEEHG 315
+ +KA+ A + +L ++ + ++++F EI++ +K L ++L+
Sbjct: 273 EEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRK 332
Query: 316 VL-VMPESSTRVRIVV 330
+ + P + ++
Sbjct: 333 IHGIKPGLTRYFKLST 348
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 54/426 (12%), Positives = 111/426 (26%), Gaps = 136/426 (31%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
V+R +P +R A+ +VL+ + GK
Sbjct: 131 VSRL---------QPYLKLRQALLELRPAKNVLIDG---------VLG-SGK-------- 163
Query: 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIS--TIGGVH-PRTV-KNNQDGTMD 117
+ + +V L + + + I + + P TV + Q
Sbjct: 164 -------TWVA------LDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 118 IDL-------IEAAIRDPKGEIVYPTTRLICLENTHANC----------------GGRC- 153
ID + I+ I RL+ + + NC C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 154 -L------SVEYTDSVGEIAKKH-GLKLHIDG------ARIFNAAVALGVPVRRLVQAAD 199
L V TD + H L H + L + L
Sbjct: 268 ILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDL----- 318
Query: 200 SASVCLSKGLGAP-VGSVIVGS-KEFIKKARRLRKTLGGGMRQVGVLCAAAL-------- 249
V P S+I S ++ + + + + L
Sbjct: 319 PREVL----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 250 ----------VALQENVLVML--DGDHKKAKLLAEGLNQLKGLRVDVDAVETNI----VY 293
+ +L ++ D ++ L++ L V+ E+ I +Y
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL-VEKQPKESTISIPSIY 432
Query: 294 FEIT----EDSKLYAACL-----LKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLS 344
E+ + L+ + + K + ++ + HH + ++
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MT 491
Query: 345 CFQKIY 350
F+ ++
Sbjct: 492 LFRMVF 497
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 19/184 (10%)
Query: 30 DDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89
D+L+H+ A E A+V + FV G+ +V + G V+ N+H
Sbjct: 165 LGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHK 224
Query: 90 HIYENGGISTIGGVHPRTVKNNQDGTMDI------DLIEAAIR------DPKGEIVYPTT 137
+Y N + + G P ++ N++ I D E IR DP+
Sbjct: 225 SVY-NSAL-AMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPF 282
Query: 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQA 197
RL + G + V + + D A + + +
Sbjct: 283 RLAVI--QLGTYDGTIYNAH---EVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLI 337
Query: 198 ADSA 201
D
Sbjct: 338 DDLG 341
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 40/148 (27%), Positives = 54/148 (36%), Gaps = 35/148 (23%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT LE +A V G SG M L G V++ D+ Y GG
Sbjct: 66 PTRTALEAALAAVEDAAFGRAFSSG-MAAADCALRAMLRPGDHVVIPDD----AY--GGT 118
Query: 97 ------ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150
+ T V V D+D + AAIR PTTRLI +E T N
Sbjct: 119 FRLIDKVFTGWNVEYTPVA-----LADLDAVRAAIR--------PTTRLIWVE-TPTN-- 162
Query: 151 GRCLSVEYTD--SVGEIAKKHGLKLHID 176
LS+ D + ++ K+ +D
Sbjct: 163 -PLLSI--ADIAGIAQLGADSSAKVLVD 187
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG- 96
PT + E + + G SG MG + S + +G +I GD +Y G
Sbjct: 59 PTVEQFEEMVCSIEGAAGSAAFGSG-MGAISSSTLAFLQKGDHLIAGDT----LY--GCT 111
Query: 97 ISTIGGVHPRT-VKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155
+S PR ++ + T D++ ++AA + P T+++ LE + AN
Sbjct: 112 VSLFTHWLPRFGIEVDLIDTSDVEKVKAAWK--------PNTKMVYLE-SPAN---PTCK 159
Query: 156 VEYTD--SVGEIAKKHGLKLHID 176
V +D + + + G +L +D
Sbjct: 160 V--SDIKGIAVVCHERGARLVVD 180
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 58/356 (16%), Positives = 112/356 (31%), Gaps = 107/356 (30%)
Query: 42 RLETEMAKVMGKEAGLFVPSGTMGNL--ISVLVHCETRGSEVILGDNSHIHIYENGGIST 99
LE +++ +GKEA + +G NL +S L+ R ++L + H I + +S
Sbjct: 92 ELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLM---GRNDYILLDERDHASIIDGSRLS- 147
Query: 100 IGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159
+N +++ + A + + + +LIC T
Sbjct: 148 --FSKVIKYGHN-----NMEDLRAKLSRLPED----SAKLIC-----------------T 179
Query: 160 DSV----GEIA---------KKHGLKLHID--------GARIFNAAVALGVPVRRLVQAA 198
D + G+I + + +D G + A G+ +
Sbjct: 180 DGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMG 239
Query: 199 DSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG-----------VLCAA 247
SK L + +G + G + I ++ A+
Sbjct: 240 -----TFSKSLAS-LGGFVAGDADVID-----------FLKHNARSVMFSASMTPASVAS 282
Query: 248 ALVALQENVLVMLDGDHKKAKLLAEG---LNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304
L AL+ ++ + KL QL D+ A E+ I+ I + K
Sbjct: 283 TLKALE----IIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATESPILPIFIRSNEK--T 336
Query: 305 ACLLKKLEEHGVLVM-------PESSTRVRIVVHHQISAN----DVHYTLSCFQKI 349
+ K L++ GV V P + +R + A + + K+
Sbjct: 337 FWVTKMLQDDGVFVNPVVSPAVPAEESLIRF----SLMATHTYDQIDEAIEKMVKV 388
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 100.0 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 100.0 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 100.0 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.98 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.98 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.98 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.98 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.98 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.98 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.98 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.98 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.98 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.97 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.97 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.97 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.97 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.97 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.97 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.97 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.97 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.97 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.97 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.97 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.97 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.97 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.97 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.97 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.97 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.97 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.97 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.97 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.97 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.97 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.97 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.97 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.97 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.97 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.94 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.97 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.97 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.97 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.96 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.96 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.96 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.96 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.96 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.96 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.96 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.96 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.96 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.96 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.96 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.95 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.95 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.95 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.95 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.95 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.95 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.94 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.94 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.94 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.94 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.94 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.93 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.93 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.88 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.93 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.92 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.92 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.92 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.89 |
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=304.03 Aligned_cols=342 Identities=49% Similarity=0.755 Sum_probs=268.5
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
.+|||+++.+..|++.+++++.+.......|+..+...++++.+++++|.+..++++||++|+..++.++. ++||+|++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~-~~gd~Vl~ 82 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT-QRGDEVIL 82 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-CCCCEEEE
Confidence 46899999888888999999987654445677788999999999999999888999999999998888877 59999999
Q ss_pred cCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC-ceecChhhHHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG-GRCLSVEYTDSV 162 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt-G~~~~~~~l~~i 162 (359)
++|+|.+.+..+......|++++.+ .++++.+|++++++.+++... ..+++++|+++++ +||| |.++|.+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~--~~~~~~~v~~~~~-~npt~G~~~~~~~l~~i 158 (347)
T 1jg8_A 83 EADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNI--HFPRTSLIAIENT-HNRSGGRVVPLENIKEI 158 (347)
T ss_dssp ETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCT--TSCCEEEEEEESS-BTTTTSBCCCHHHHHHH
T ss_pred cCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccc--cccCceEEEEecc-ccccCCccCcHHHHHHH
Confidence 9999987665222356678888888 555677899999999973100 0026899999554 4599 999999999999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhH
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG 242 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (359)
.++|++||+++|+|++|.++.....+.+...+....|.+++|+||++++|.|++++.++++++.++..+..++.+..+..
T Consensus 159 ~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jg8_A 159 CTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 238 (347)
T ss_dssp HHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTH
T ss_pred HHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHHHHHHHHHHcCCchhHHH
Confidence 99999999999999998765443334445555457888888999999988887788899999888777777776665566
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC
Q 018243 243 VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES 322 (359)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 322 (359)
..++++..+++...+ .+++..++++++.+.|+++ ++++...+..++++|+.++. .+.+..++.++|.++||.+.+++
T Consensus 239 ~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~ 315 (347)
T 1jg8_A 239 VLAAAGIIALTKMVD-RLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDN-LKVNAHGFIEALRNSGVLANAVS 315 (347)
T ss_dssp HHHHHHHHHHHHSST-THHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTT-SSSCHHHHHHHHHHHTEECEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEccc-ccCCHHHHHHHHHHCCCEEecCC
Confidence 666666666765443 3344456778889999888 77653334467889988863 12367889999988999998877
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 323 STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 323 ~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+++|++++..++++++++++++|+++++++
T Consensus 316 ~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 316 DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7899999987889999999999999988754
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=273.51 Aligned_cols=328 Identities=21% Similarity=0.346 Sum_probs=254.3
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCe--EEecCC
Q 018243 9 RSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSE--VILGDN 86 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~--vl~~~~ 86 (359)
.+.++.+++|++.+++.+.. ....|+..+...++++.++++++.+..++++||++|+..++..++. +|++ |+++.+
T Consensus 20 ~~~~~~g~~p~v~~ai~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 20 NGPRNVGVLTEALQNIDDNL-ESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp SSCCBHHHHHHHTTTSCTTC-BCCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred CCccccCCCHHHHHHHHhhc-ccCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 34455667799999998843 4456777899999999999999999888899999999999998884 6765 666777
Q ss_pred CcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 87 SHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 87 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
+|++.+.........|.+++.++. +++.+|+++|++. . +++++|++++++|+++|.+++.+++++|+++|
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~--------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~ 167 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-R--------EPVSSVLIELPQREIGGQLPAFEELEKISEYC 167 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-S--------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred ceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-c--------CCceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence 776655422222456888888876 5678999999987 4 68999999887764448999999999999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCA 246 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (359)
++||+++|+|++|.++.....+.+..++....|+++.|+||++++|.||+++.++++++.++......+.++......++
T Consensus 168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
T 3pj0_A 168 HEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLYPYIL 247 (359)
T ss_dssp HHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHH
T ss_pred HHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 99999999999987665444444555555678999899999998888888999999999988777666655544455555
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC----
Q 018243 247 AALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES---- 322 (359)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~---- 322 (359)
++..+++...+ ..++..++++++.+.|+++|++++...+..++++|+.++.+...+..++.+.|.++||.+.++.
T Consensus 248 a~~~~l~~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~ 326 (359)
T 3pj0_A 248 SADYYFEKRIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS 326 (359)
T ss_dssp HHHHHHHHHGG-GHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE
T ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC
Confidence 55566665544 5666788899999999999899885345688899998876434567889999999999997763
Q ss_pred --CcEEEEEeCCC---CCHHHHHHHHHHHHHH
Q 018243 323 --STRVRIVVHHQ---ISANDVHYTLSCFQKI 349 (359)
Q Consensus 323 --~~~lRi~~~~~---~~~~~i~~~~~~l~~~ 349 (359)
..++|+++... .+.+++++++++|.+.
T Consensus 327 ~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 327 ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 35689987432 5778888888888764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=269.92 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=249.7
Q ss_pred ccccccccCCCCCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhhhhcCC
Q 018243 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 2 ~~~~id~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
.+.+|||.+++...|+|++++++.+.... ...|+..+...++++.+++++|.+. .++++||++|+..++..++ ++|+
T Consensus 6 ~~~~id~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~-~~gd 84 (356)
T 1v72_A 6 RPPALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT-PPWG 84 (356)
T ss_dssp CCCCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC-CTTE
T ss_pred CCceEeeccCCccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc-CCCC
Confidence 35689999998888889999999987543 3456667888999999999999654 3788999999999999887 5999
Q ss_pred eEEecCCCcceeeccccccccC-CccceeeecCCCCCCCHHHHHH-HhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 80 EVILGDNSHIHIYENGGISTIG-GVHPRTVKNNQDGTMDIDLIEA-AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
+|+++.++|++.+..+...... |.+++.++.+ ++.+|+++|++ .+++..+ ...+++++|+++++ +| ||.+++.+
T Consensus 85 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~-~~~~~~~~v~~~~~-~~-tG~~~~~~ 160 (356)
T 1v72_A 85 NIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGD-VHTTQPACVSITQA-TE-VGSIYTLD 160 (356)
T ss_dssp EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTC-TTSCEEEEEEEESS-CT-TSCCCCHH
T ss_pred EEEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchh-hccCCceEEEEEcC-CC-CCccCCHH
Confidence 9999999998877621123333 8888888764 57789999999 8873100 01126899999775 55 99999999
Q ss_pred hHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh--hcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhh
Q 018243 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL--VQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~--~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~ 234 (359)
++++|.++|++||+++|+|++|..+.....+.....+ ....|++++|+||+ |+|.| |++++++++.+.++......
T Consensus 161 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~~~~ 239 (356)
T 1v72_A 161 EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYRRKRA 239 (356)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHHhhcc
Confidence 9999999999999999999997654332223222222 13678888999999 77888 78888999888877654443
Q ss_pred CCCcchhHHHHHHHHHHHHH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 235 GGGMRQVGVLCAAALVALQE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
+................++. ......++..++++++.+.|++++|+++.. +..++++|+.++. ++.++|.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~-------~~~~~l~~ 311 (356)
T 1v72_A 240 GHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLDS-------AMIDALLK 311 (356)
T ss_dssp TCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEES-CCCSSEEEEEECH-------HHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEcc-CCCccEEEEEcCH-------HHHHHHHh
Confidence 32221111211112223322 122255667788999999999988998754 4578888888752 78888989
Q ss_pred cCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 314 ~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+||.+.++. ..++|++++..++++++++++++|++++++..
T Consensus 312 ~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 312 AGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp TTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred cCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999998653 57899999888999999999999999887653
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=268.33 Aligned_cols=306 Identities=20% Similarity=0.287 Sum_probs=238.5
Q ss_pred CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCC--eEEecCCCcceeeccccccccCCccceee
Q 018243 31 DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGS--EVILGDNSHIHIYENGGISTIGGVHPRTV 108 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~--~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 108 (359)
...|+.++...++++.+++++|.+..++++||++|+..++..+.. +|+ .|+++.++|++.+..+......|++++.+
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV 118 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC
T ss_pred cccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh-cCCCcEEEecccceeeeeccchhhhccCcEEEEe
Confidence 445777788999999999999998889999999999999988884 776 78888888877665222345668888888
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC-ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc
Q 018243 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG-GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL 187 (359)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt-G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 187 (359)
+. +++.+|+++|++. . . +++|++++++| || |.+++.+++++|+++|++||+++|+|++|.++.....
T Consensus 119 ~~-~~~~~d~~~l~~~-~--------~-~~~v~~~~p~n-p~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~ 186 (357)
T 3lws_A 119 GA-ADRLMTLDEIKAL-P--------D-IACLLLELPQR-EIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYY 186 (357)
T ss_dssp SC-TTSCCCHHHHHTC-C--------S-CSEEEEESSBG-GGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH
T ss_pred cC-CCCCcCHHHHhcC-c--------C-cceEEEEcccc-cCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhc
Confidence 74 5667899998875 2 3 77888866655 87 9999999999999999999999999999865544444
Q ss_pred CchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 018243 188 GVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKA 267 (359)
Q Consensus 188 ~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (359)
+.+...+....|+++.|+||++++|.||++++++++++.++......+.++......++++..+++...+ ..+++.+++
T Consensus 187 ~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 265 (357)
T 3lws_A 187 EKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKD-RMGQYYEQA 265 (357)
T ss_dssp TCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5555555556888888999999778889999999999998877777666555455555566666766544 455567888
Q ss_pred HHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcEEEEEeCCC---CCHHHH
Q 018243 268 KLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STRVRIVVHHQ---ISANDV 339 (359)
Q Consensus 268 ~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lRi~~~~~---~~~~~i 339 (359)
+++.+.|+++|++++...+..++++|+.++.....+..++.+.|.++||.+.++. ..++|+++... .+.+++
T Consensus 266 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l 345 (357)
T 3lws_A 266 KQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTR 345 (357)
T ss_dssp HHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHH
T ss_pred HHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHH
Confidence 9999999999999874445688999999876322346788999999999997752 34799987533 578889
Q ss_pred HHHHHHHHHHH
Q 018243 340 HYTLSCFQKIY 350 (359)
Q Consensus 340 ~~~~~~l~~~~ 350 (359)
++++++|.+++
T Consensus 346 ~~al~~l~~al 356 (357)
T 3lws_A 346 DAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99988888765
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=270.95 Aligned_cols=331 Identities=15% Similarity=0.177 Sum_probs=251.6
Q ss_pred ccccccCCCCCC--hHHHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTK--PTEAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~--~~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++++.+ ++|.+.+++.+.... ...++..+...++++.++++++.+..+++++|++|+..++..+
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~ 123 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL 123 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHh
Confidence 579999997644 347777777653321 1124456778999999999999998899999999999988888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++|+.|+++.|+|.+... + ++..|.+++.++.. |+++|++.+++..... .++++|++++ ++||||.+
T Consensus 124 ~-~~gd~v~~~~~~~~~~~~-~--~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~--~~~~~v~~~~-~~nptG~~ 191 (399)
T 3tqx_A 124 L-GPEDAIISDELNHASIID-G--IRLCKAQRYRYKNN-----AMGDLEAKLKEADEKG--ARFKLIATDG-VFSMDGII 191 (399)
T ss_dssp C-CTTCEEEEETTCCHHHHH-H--HHSCCSEEEEECTT-----CTTHHHHHHHHHHTTT--CSSEEEEEES-EETTTTEE
T ss_pred c-CCCCEEEECCcccHHHHH-H--HHHcCCceeEeCCC-----CHHHHHHHHHhhhccC--CCceEEEEeC-CCCCCCCc
Confidence 7 599999999999988665 3 77788888888753 7788888887321100 1788999966 55699999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
++ +++|.++|++||+++|+|++|+.+.....+.+.... ....|+++.|+||+++++.||++++++++++.+...
T Consensus 192 ~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~~ 268 (399)
T 3tqx_A 192 AD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNR 268 (399)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHHHHHHHHh
Confidence 98 899999999999999999998655443333333332 236688888999999966779999999999988765
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHH---hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQE---NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
...+..+...+....+++..+++. ..++.++++.++++++.+.|+++ |+++. +..++++++.++. ..+..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~--~~~~~~~ 343 (399)
T 3tqx_A 269 SRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV--PGNHPIIPVMLGD--AQLATNM 343 (399)
T ss_dssp CHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCSSSEEEEEEEC--HHHHHHH
T ss_pred CcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCCCCEEEEEeCC--HHHHHHH
Confidence 443322223344555555555543 34557788889999999999998 88775 4578888888875 2478899
Q ss_pred HHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++|.++||.+.++ +..++|++++..++++++++++++|+++++++.
T Consensus 344 ~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 344 ADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp HHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998899998643 346899999888999999999999999988753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.77 Aligned_cols=335 Identities=11% Similarity=0.097 Sum_probs=250.0
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHh----CC---CCeEEcCCchHHHHH
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVM----GK---EAGLFVPSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~----~~---~~~~~~~~gt~a~~~ 68 (359)
+.+|||.++.+. .|.+.+.+++.+..... ..|+..++..++++.+++++ |. +..++++||++++..
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~ 155 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDL 155 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHH
Confidence 457999887654 36688888877654322 34666677899999999998 86 234677777888888
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhc----CCCCCccCCceeEEEEec
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIR----DPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~v~i~~ 144 (359)
++..++ ++||.|+++.|+|.+... .+...|.+++.++.+.++ +|+++|++.++ +. .++++|++.+
T Consensus 156 ~~~~l~-~~Gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~------~~~k~v~~~~ 224 (448)
T 3aow_A 156 IGRVFL-NPGDIVVVEAPTYLAALQ---AFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQG------KKVKVVYTVP 224 (448)
T ss_dssp HHHHHC-CTTCEEEEEESCCHHHHH---HHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTT------CCEEEEEECC
T ss_pred HHHHHc-CCCCEEEEeCCChHHHHH---HHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccC------CCCeEEEECC
Confidence 888887 599999999999887654 366788899999876654 89999999987 31 3688887668
Q ss_pred cccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc-CccEEEEeccccCCCce--eeEEecC
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ-AADSASVCLSKGLGAPV--GSVIVGS 220 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~-~~d~~~~s~~K~~g~~~--gg~~~~~ 220 (359)
.++||||.+++.+++++|.++|++||++||+||+|..+.+... ..++..+.. +.++++.|+||+++ |+ .||++++
T Consensus 225 ~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~ 303 (448)
T 3aow_A 225 TFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGD 303 (448)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEEC
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeC
Confidence 8888999999999999999999999999999999865443211 112333321 23456669999998 54 2899999
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhc-CC-CceEecCCccceEEE
Q 018243 221 KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQ-LK-GLRVDVDAVETNIVY 293 (359)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~-~~-g~~~~~~~~~~~~~~ 293 (359)
+++++.+.........+. +...+.++...++ .+.++.++++.++++++.+.|++ +| ++++. .+..++++|
T Consensus 304 ~~l~~~l~~~~~~~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~-~p~~g~~~~ 380 (448)
T 3aow_A 304 PGIIRKMEIAKQSTDLCT--NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWT-KPEGGMFIW 380 (448)
T ss_dssp HHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC-CCSBSSEEE
T ss_pred HHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEe-CCCccEEEE
Confidence 999998876655443333 3344444444443 33454666777889999999987 57 68764 345788999
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+.++.. .+..++.+.|.++||.+.|+ +..++|++++. .+++++++++++|.++++++.+
T Consensus 381 v~~~~~--~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 381 VTLPDG--IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp EECSTT--CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred EEcCCC--CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 998742 46778999998889999764 35689999974 5899999999999999987643
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=268.98 Aligned_cols=331 Identities=19% Similarity=0.200 Sum_probs=250.4
Q ss_pred ccccccCCCCCC--hHHHHHHHHHcCCCC-C-------CccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTK--PTEAMRAAMASAEVD-D-------DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~--~~~~~~~a~~~~~~~-~-------~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++++.+ ++|.+.+++.+.... . ..++..+...++++.+++++|.+..++++||++|+..++.++
T Consensus 65 ~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l 144 (427)
T 2w8t_A 65 DTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTL 144 (427)
T ss_dssp EEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHh
Confidence 468999997643 558888877664321 1 123346778999999999999988899999999999998888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. ++|+.|+++.++|.+... + +...|.+++.++. .|+++|++.+++..+ .++++|++++++ ||||.+
T Consensus 145 ~-~~gd~vl~~~~~h~~~~~-~--~~~~g~~~~~~~~-----~d~~~le~~l~~~~~----~~~~~v~~~~~~-n~tG~~ 210 (427)
T 2w8t_A 145 A-GKGEYVILDADSHASIYD-G--CQQGNAEIVRFRH-----NSVEDLDKRLGRLPK----EPAKLVVLEGVY-SMLGDI 210 (427)
T ss_dssp S-CTTCEEEEETTCCHHHHH-H--HHHSCSEEEEECT-----TCHHHHHHHHHTSCS----SSCEEEEEESEE-TTTTEE
T ss_pred c-CCCCEEEECCcccHHHHH-H--HHHcCCeeEEeCC-----CCHHHHHHHHHhccC----CCCeEEEEcCCC-CCCCCc
Confidence 7 599999999999988765 3 6677888888874 499999999984210 178899997766 599999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
.+ +++|.++|++||+++|+||+|+.+.....+...... ..+.|+++.|+||++|. .||++++++++++.+...
T Consensus 211 ~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~-~gG~v~~~~~l~~~l~~~ 286 (427)
T 2w8t_A 211 AP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT-VGGFVVSNHPKFEAVRLA 286 (427)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS-CCEEEEECCTTGGGGGGT
T ss_pred cC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhcc-CCCEEEeCHHHHHHHHHh
Confidence 88 899999999999999999999776654333333332 23568888999999984 568888888888776544
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+..+...++...+++..+++.. .++.++++.++++++.+.|+++ |+.+..++..++++++.++. ..+..++.
T Consensus 287 ~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 363 (427)
T 2w8t_A 287 CRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--QEQAAMMW 363 (427)
T ss_dssp CHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS--HHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC--HHHHHHHH
Confidence 2212112223445555555555433 2347778889999999999998 88874232267888888875 24678899
Q ss_pred HHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 309 KKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 309 ~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+.|.++||.+.++. ..++|++++..++++++++++++|+++++++.+
T Consensus 364 ~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 364 QALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp HHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 99988899986642 368999998888999999999999999988754
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=264.11 Aligned_cols=332 Identities=15% Similarity=0.163 Sum_probs=248.8
Q ss_pred cccccccCCCCCC--hHHHHHHHHHcCCCC-CC-----cc--CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK--PTEAMRAAMASAEVD-DD-----VL--MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~--~~~~~~~a~~~~~~~-~~-----~~--~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
..+|||.++++.+ ++|.+.+++.+.... .. .| +..+...++++.+++++|.+..+++++|++++..++..
T Consensus 45 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~ 124 (401)
T 1fc4_A 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFET 124 (401)
T ss_dssp CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHH
T ss_pred ccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHH
Confidence 3578999987665 368888888764321 11 12 22577899999999999998779999999999998888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++|+.|+++.++|.+.+. + +...|.+++.++. .|+++|++.+++..+. ..++++|++++ ++||||.
T Consensus 125 ~~-~~gd~v~~~~~~~~~~~~-~--~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~--~~~~~~v~~~~-~~nptG~ 192 (401)
T 1fc4_A 125 LL-GAEDAIISDALNHASIID-G--VRLCKAKRYRYAN-----NDMQELEARLKEAREA--GARHVLIATDG-VFSMDGV 192 (401)
T ss_dssp HC-CTTCEEEEETTCCHHHHH-H--HHTSCSEEEEECT-----TCHHHHHHHHHHHHHT--TCSSEEEEEES-EETTTTE
T ss_pred Hc-CCCCEEEEcchhHHHHHH-H--HHHcCCceEEECC-----CCHHHHHHHHHHhhcc--CCCceEEEEeC-CcCCCCC
Confidence 87 599999999999987765 2 6678888888864 3899999988731000 01688888855 5569999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH---hhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR---RLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~---~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+++ +++|.++|+++|+++|+|++|+.+.....+.... .+..+.|+++.|+||+++++.||++++++++++.+..
T Consensus 193 ~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~ 269 (401)
T 1fc4_A 193 IAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQ 269 (401)
T ss_dssp ECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHHHHHHHH
Confidence 998 8999999999999999999986444322232222 2223568888899999944558999999999988876
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+...+...++++..+++... ++.+++..++++++.+.|+++ ++++. +..++++|+.++. +.+..++
T Consensus 270 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~--~~~~~~l 344 (401)
T 1fc4_A 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA--GADHAIIPVMLGD--AVVAQKF 344 (401)
T ss_dssp HCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEEC--HHHHHHH
T ss_pred hCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCCCEEEEEcCC--hHHHHHH
Confidence 543221122335555666666665432 347778889999999999998 88775 4578899998864 3577889
Q ss_pred HHHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+.|.++||.+.++. ..++|++++..++++++++++++|+++++++.
T Consensus 345 ~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 345 ARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp HHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999988999997653 35799999878999999999999999988764
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=264.31 Aligned_cols=329 Identities=20% Similarity=0.203 Sum_probs=246.2
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
.+|||.++.+.. +++.+.+++.+.......|+..+...++++.++++++.+ ..++++||++++..++..+. ++|++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~ 104 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV-GPGDE 104 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-CTTCE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC-CCCCE
Confidence 468998886653 458888888876543334666667899999999999985 45788888999999999887 59999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecC---CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNN---QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
|++++|+|.+... .++..|.+++.++.+ +++.+|+++|++.++ +++++|++++ ++||||.++|.+
T Consensus 105 Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-~~nptG~~~~~~ 172 (381)
T 1v2d_A 105 VVVLEPFFDVYLP---DAFLAGAKARLVRLDLTPEGFRLDLSALEKALT--------PRTRALLLNT-PMNPTGLVFGER 172 (381)
T ss_dssp EEEEESCCTTHHH---HHHHTTCEEEEEECEEETTEEECCHHHHHTTCC--------TTEEEEEEES-SCTTTCCCCCHH
T ss_pred EEEcCCCchhHHH---HHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC--------cCCEEEEECC-CCCCCCCccCHH
Confidence 9999999887554 367788899888765 557789999999887 6789999965 566999999999
Q ss_pred hHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce--eeEEecCHHHHHHHHHHHHhhC
Q 018243 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV--GSVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~~~~~~~ 235 (359)
++++|.++|++||+++|+|++|..+.....+.+...+..+.++++.|+||++|.++ .|++++++++++.++.......
T Consensus 173 ~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 252 (381)
T 1v2d_A 173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTS 252 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcc
Confidence 99999999999999999999986543321223333332367788889999998654 3888899888888876665444
Q ss_pred CCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHH
Q 018243 236 GGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKK 310 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
.+.+ ...++++..+++ .+.++.++++.++++++.+.|++. |+++.. +..+.++|+.++.. + +.+.
T Consensus 253 ~~~~--~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~---~---~~~~ 322 (381)
T 1v2d_A 253 FSAP--TPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYV-PEGTYFLMAELPGW---D---AFRL 322 (381)
T ss_dssp SSCC--HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CSBSSEEEEECTTC---C---HHHH
T ss_pred cCCC--cHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC-CCcceEEEEecChH---h---HHHH
Confidence 4442 233333333443 334556777888999999999996 888754 34577889988752 2 6667
Q ss_pred HHhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 311 LEEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 311 l~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
|.++||.+.++ +..++|++++. +++++++++++|++++++.+...
T Consensus 323 l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~~ 375 (381)
T 1v2d_A 323 VEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREAE 375 (381)
T ss_dssp HHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-------
T ss_pred HHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccccc
Confidence 78999999764 35689999963 99999999999999998876543
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=257.83 Aligned_cols=318 Identities=17% Similarity=0.184 Sum_probs=241.6
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
.+|||.++.+. .++|.+.+++.+.......| +.+...++++.++++++.+ ..++++||++++..++..++ ++|++
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~ 110 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSVETEIY-PDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL-DTTTN 110 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-STTCE
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc-cCCCE
Confidence 56999998554 45699999999876544444 3466799999999999974 35778888899999998887 59999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
|+++.|+|.+... .++..|.+++.++.++++.+|++++++.++ +++++|+++++ +||||.++|.+++.
T Consensus 111 vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~~~~l~ 178 (363)
T 3ffh_A 111 TVMATPTFVQYRQ---NALIEGAEVREIPLLQDGEHDLEGMLNAID--------EKTTIVWICNP-NNPTGNYIELADIQ 178 (363)
T ss_dssp EEEEESSCHHHHH---HHHHHTCEEEEEECCTTSCCCHHHHHHHCC--------TTEEEEEEESS-CTTTCCCCCHHHHH
T ss_pred EEEcCCChHHHHH---HHHHcCCEEEEecCCCCCCcCHHHHHHhcc--------cCCCEEEEeCC-CCCcCCCcCHHHHH
Confidence 9999999887554 367788899999888788999999999998 78999999665 56999999988888
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-c-CccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-Q-AADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~-~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
++++.|++ |+++|+|++|+.+.. ....+..... . +..+++.|+||++|.++. |+++.++++.+.++.....
T Consensus 179 ~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--- 253 (363)
T 3ffh_A 179 AFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPP--- 253 (363)
T ss_dssp HHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCCS---
T ss_pred HHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCCC---
Confidence 88777777 999999999864433 1111222221 1 222555699999985433 8888899999887655432
Q ss_pred CcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 237 GMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
+..+...++++..+++ .+.++.+++..++++++.+.|++++++++. +..++++|+.++. +..++.+.|.++
T Consensus 254 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~~~----~~~~~~~~l~~~ 326 (363)
T 3ffh_A 254 -FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY--PANGNFVLIDLGI----EAGTIFSYLEKN 326 (363)
T ss_dssp -CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC--CCCSSEEEEECSS----CHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC--CCCCeEEEEECCC----CHHHHHHHHHHC
Confidence 2335555566666663 444557777888999999999996698875 3467889998875 577899999899
Q ss_pred CceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 315 gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
||.+.++. .+++|++++ +++++++++++|++++
T Consensus 327 gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 327 GYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp TEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred CeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 99997764 578999984 8999999999998763
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=267.25 Aligned_cols=332 Identities=15% Similarity=0.128 Sum_probs=247.4
Q ss_pred ccccccCCCCC--ChHHHHHHHHHcCCCCC--CccCCCh----HHHHHHHHHHHHhCC-----CCeEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVT--KPTEAMRAAMASAEVDD--DVLMHDP----TAFRLETEMAKVMGK-----EAGLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~--~~~~~~~~a~~~~~~~~--~~~~~~~----~~~~l~~~la~~~~~-----~~~~~~~~gt~a~~~~l 70 (359)
.+|||.++++. .++|.+++++.+..... ..|+... ....+++.+++++|. +..++++||++|+..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 47999997655 45588888887754322 1244433 345555666666787 35577888888999988
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec------CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEec
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN------NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~ 144 (359)
.+++ ++|++|+++.|+|.+... .++..|.+++.++. +.++.+|+++|++.++ .++++|++++
T Consensus 120 ~~l~-~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~ 187 (407)
T 3nra_A 120 AATV-ARGDKVAIVQPDYFANRK---LVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK--------AGARVFLFSN 187 (407)
T ss_dssp HTTC-CTTCEEEEEESCCTHHHH---HHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH--------TTCCEEEEES
T ss_pred HHhC-CCCCEEEEcCCcccchHH---HHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh--------hCCcEEEEcC
Confidence 8887 599999999999887654 37778989999987 4678899999999998 6788888867
Q ss_pred cccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhh---cCccEEEEeccccCCCce-e-eEEe
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLV---QAADSASVCLSKGLGAPV-G-SVIV 218 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~---~~~d~~~~s~~K~~g~~~-g-g~~~ 218 (359)
+ +||||.++|.+++++|+++|++||+++|+|++|..+.+.... .+...+. .+.++++.|+||++|.++ + |+++
T Consensus 188 p-~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 266 (407)
T 3nra_A 188 P-NNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 266 (407)
T ss_dssp S-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred C-CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence 6 679999999999999999999999999999998665443111 1222221 233466779999998543 2 8888
Q ss_pred cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 219 GSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
+++++++.++.....+..+. ++..++++...++ ...++.+++..++++++.+.|+++|++.+. .+..++++|+.
T Consensus 267 ~~~~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~ 343 (407)
T 3nra_A 267 GSRAIIARMEKLQAIVSLRA--AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFAR-TPQAGSYLFPR 343 (407)
T ss_dssp ECHHHHHHHHHHHHHHTSSS--CHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCC-CCSBSSEECCB
T ss_pred cCHHHHHHHHHHHhhhccCC--ChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEe
Confidence 99999999887776666554 3333444444442 344556777888899999999998888874 34567888888
Q ss_pred eccchHHHHHHHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 296 ITEDSKLYAACLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++. .+.+..++.+.|. ++||.+.++ +..++|++++ .+++++++++++|++++++++
T Consensus 344 ~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 344 LPK-LAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CCC-BSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCC-CCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 875 2346788999994 579999764 3578999996 499999999999999998764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=261.93 Aligned_cols=330 Identities=15% Similarity=0.146 Sum_probs=248.2
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CC----CC-eEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GK----EA-GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~----~~-~~~~~~gt~a~~~~l~~ 72 (359)
.+|||.++.+. .+++.+.+++.+.... ...|+..++..++++.+++++ |. +. .++++||++++..++..
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~ 106 (389)
T 1gd9_A 27 DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSA 106 (389)
T ss_dssp SCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTT
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHH
Confidence 57899988765 3457888887764422 234655556789999999988 73 35 67888889999999988
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++|++|++++|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|++++ ++|||
T Consensus 107 ~~-~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-~~npt 173 (389)
T 1gd9_A 107 FL-KDGEEVLIPTPAFVSYAP---AVILAGGKPVEVPTYEEDEFRLNVDELKKYVT--------DKTRALIINS-PCNPT 173 (389)
T ss_dssp TC-CTTCEEEEEESCCTTHHH---HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC--------TTEEEEEEES-SCTTT
T ss_pred hC-CCCCEEEEcCCCchhHHH---HHHHCCCEEEEeccCCccCCCCCHHHHHHhcC--------cCceEEEEEC-CCCCC
Confidence 87 589999999999888654 3667788998887654 46789999999998 6788988855 56699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh--cCccEEEEeccccCCCce--eeEEecCHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV--QAADSASVCLSKGLGAPV--GSVIVGSKEFIK 225 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~--~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~ 225 (359)
|.++|.+++++|+++|++||+++|+|++|..+..... ..+...+. .+.|+++.|+||++|.++ .|++++++++.+
T Consensus 174 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 253 (389)
T 1gd9_A 174 GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIE 253 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHH
Confidence 9999999999999999999999999999866544211 22333332 245788889999998544 288999999998
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHH---H--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVALQ---E--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
.++........+. +...+.++..+++ . +.++.++++.++++++.+.|+++ |+++.. +..+.++|+.++. .
T Consensus 254 ~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~-~ 328 (389)
T 1gd9_A 254 RMVKFQMYNATCP--VTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVK-PKGAFYIFPRIRD-T 328 (389)
T ss_dssp HHHHHHTTTTCSC--CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CCBTTEECCBCGG-G
T ss_pred HHHHHHhhhccCC--CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-CCeeeEEEEeccC-C
Confidence 8876654443333 3444444455553 2 45556777888999999999998 887743 4456678888763 1
Q ss_pred HHHHHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ~~~~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+..++.+.|. ++||.+.++. ..++|++++ .+++++++++++|.+++++.
T Consensus 329 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 329 GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 236778999996 9999997653 568999996 48999999999999988764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=262.29 Aligned_cols=335 Identities=16% Similarity=0.121 Sum_probs=246.5
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
+.+|||.++.+. .|++.+.+++.+.... ...|+..++..++++.+++++|.+ ..++++||++++..++.++
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~ 111 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF 111 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh
Confidence 457899887543 3568888888765432 134555567899999999999864 2356666677888888888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. ++|++|+++.|+|.+... .+...|.+++.++.+.++ +|+++|++.+++ .++++|++.+.++||||.+
T Consensus 112 ~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~-------~~~~~v~~~~~~~nptG~~ 179 (397)
T 2zyj_A 112 L-DEGSPVLLEAPSYMGAIQ---AFRLQGPRFLTVPAGEEG-PDLDALEEVLKR-------ERPRFLYLIPSFQNPTGGL 179 (397)
T ss_dssp C-CTTCEEEEEESCCHHHHH---HHHTTCCEEEEEEEETTE-ECHHHHHHHHHH-------CCCSCEEECCBSCTTTCCB
T ss_pred C-CCCCEEEEeCCCcHHHHH---HHHHcCCEEEecCcCCCC-CCHHHHHHHHhh-------cCCeEEEECCCCcCCCCCc
Confidence 7 589999999999887654 366788898888776554 899999999983 3678886546667899999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcC---cc-EEEEeccccCCCcee-eEEecCHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQA---AD-SASVCLSKGLGAPVG-SVIVGSKEFIKKA 227 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~---~d-~~~~s~~K~~g~~~g-g~~~~~~~~~~~~ 227 (359)
++.+++++|+++|++||+++|+||+|+.+..... ..+...+... .+ +++.|+||++|.+.+ |++++++++.+.+
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l 259 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKL 259 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHH
Confidence 9999999999999999999999999865443211 1233344222 23 556699999992233 8899999999888
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhc-CC-CceEecCCccceEEEEEeccchH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQ-LK-GLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~-~~-g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
.........+. +...+.++...++ ...++..+++.++++++.+.|++ +| ++++.. +..++++|+.++. +
T Consensus 260 ~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~~~~--~ 334 (397)
T 2zyj_A 260 VQAKQGADLHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWMELPK--G 334 (397)
T ss_dssp HHHHHHHHSSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEECST--T
T ss_pred HHHHHhhcCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEEcCC--C
Confidence 76655443333 3344444455553 23444666677888999999987 57 687643 4578899999874 2
Q ss_pred HHHHHHHHHHHhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 302 LYAACLLKKLEEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 302 ~~~~~~~~~l~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+..++.+.|.++||.+.++ +..++|++++. .+++++++++++|+++++++.+
T Consensus 335 ~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 335 LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYAT-LDREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 46778999998889999764 35789999974 4899999999999999987653
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=258.62 Aligned_cols=323 Identities=14% Similarity=0.105 Sum_probs=245.6
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
..+|||.++.+.. ++|.+.+++.+.......| +.+...++++.++++++.+ ..++++||++++..++..++ ++||
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd 93 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVKANRY-AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA-SLEA 93 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC-CTTC
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh-CCCC
Confidence 4679999875554 5699999999876544445 3467799999999999974 34677778889988888887 5999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|+++.|+|.+... .++..|.+++.++.+.++.+|+++|++.+++. +++++|+++++ +||||.+++.+++
T Consensus 94 ~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~~~v~l~~p-~nptG~~~~~~~l 163 (354)
T 3ly1_A 94 QLVIPELTYGDGEH---FAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY------SGPSIVYLVNP-NNPTGTITPADVI 163 (354)
T ss_dssp EEEEESSSCTHHHH---HHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC------SSCEEEEEESS-CTTTCCCCCHHHH
T ss_pred eEEECCCCchHHHH---HHHHcCCEEEEecCCCCCCCCHHHHHHHhccC------CCCCEEEEeCC-CCCcCCCcCHHHH
Confidence 99999999887654 36778999999988878999999999999842 37889999655 6699999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc---CccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHHhh
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ---AADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~---~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~ 234 (359)
.+|+++| ++|+++|+|++|..+.......+...... +.++++.|+||++|.++ + |+++.++++.+.++.....
T Consensus 164 ~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~- 241 (354)
T 3ly1_A 164 EPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG- 241 (354)
T ss_dssp HHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC-
T ss_pred HHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC-
Confidence 9998888 89999999999764433211112222211 33466679999998543 3 8899999998887654443
Q ss_pred CCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+..+...++++..+++ ...++.++++.++++++.+.|+++ ++.+. +..++++|+.++. +..++.+.|.
T Consensus 242 ---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~--~~~~~~~~~~~~~----~~~~~~~~l~ 311 (354)
T 3ly1_A 242 ---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL--PSEGNFVFHQLVV----PLKDYQTHMA 311 (354)
T ss_dssp ---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCCSSEEEEECSS----CHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC--CCCceEEEEECCC----CHHHHHHHHH
Confidence 2234445555555553 344557777888999999999988 87764 3478889998875 5678999998
Q ss_pred hcCceec---cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVM---PESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 313 ~~gi~~~---~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++||.+. .+...++|++++ +++++++++++|++++++
T Consensus 312 ~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 312 DAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp HTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred HCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 9999986 124578999984 789999999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=264.60 Aligned_cols=344 Identities=14% Similarity=0.119 Sum_probs=248.3
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHh----CCC-----CeEEcCCchHHH
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVM----GKE-----AGLFVPSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----~~~-----~~~~~~~gt~a~ 66 (359)
+.+|||.++.+. .|++.+.+++.+.... ...|+..++..++++.+++++ |.+ ..++++||++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al 122 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL 122 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHH
Confidence 457899887543 3568888888765432 134655567889999999998 842 235666667888
Q ss_pred HHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..++.+++ ++|++|+++.|+|.+... .+...|.+++.++.++++ +|+++|++.+++..+..+..++++|++.+.+
T Consensus 123 ~~~~~~l~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~ 197 (425)
T 1vp4_A 123 DLIGKLFL-DDESYCVLDDPAYLGAIN---AFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 197 (425)
T ss_dssp HHHHHHHC-CTTCEEEEEESCCHHHHH---HHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred HHHHHHhC-CCCCEEEEeCCCcHHHHH---HHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCC
Confidence 88888887 589999999999887654 366788899888776554 8999999998720000000278888655777
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc-CccEEEEeccccCCCce--eeEEecCHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ-AADSASVCLSKGLGAPV--GSVIVGSKE 222 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~-~~d~~~~s~~K~~g~~~--gg~~~~~~~ 222 (359)
+||||.++|.+++++|+++|++||+++|+||+|+.+.+... ..+...+.. +.++++.|+||+++ ++ .|+++++++
T Consensus 198 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~ 276 (425)
T 1vp4_A 198 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKE 276 (425)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHH
Confidence 88999999999999999999999999999999865443211 123333322 23466679999999 44 288999999
Q ss_pred HHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHhcC-C---CceEecCCccceEEE
Q 018243 223 FIKKARRLRKTLGGGMRQVGVLCAAALVALQE-----NVLVMLDGDHKKAKLLAEGLNQL-K---GLRVDVDAVETNIVY 293 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~l~~~l~~~-~---g~~~~~~~~~~~~~~ 293 (359)
+++.+.........+. +...++++..+++. +.++.++++.++++++.+.|++. | ++.+. .+..++++|
T Consensus 277 ~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~-~~~~g~~~~ 353 (425)
T 1vp4_A 277 FIRKIVQAKQSADLCS--PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV-KSEGGLFIW 353 (425)
T ss_dssp HHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC-CCSBSSEEE
T ss_pred HHHHHHHHhhhhcCCC--CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe-cCCccEEEE
Confidence 9988876665544333 33444455555543 34445666778889999999874 5 57764 345788999
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
+.++.. .+..++.+.|.++||.+.++ +..++||+++. .+++++++++++|+++++++.++++
T Consensus 354 ~~~~~~--~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~e~i~~~l~~l~~~l~~~~~~~~ 423 (425)
T 1vp4_A 354 LTLPEG--FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGKEKH 423 (425)
T ss_dssp EECCTT--CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCC--CCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 998742 35668899997789999764 35689999974 4899999999999999998877654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=260.45 Aligned_cols=325 Identities=14% Similarity=0.123 Sum_probs=247.2
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++.+.. +++.+.+++.+.... ...|+..++..++++.+++++ |.+ ..++++||++++..++..+
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l 121 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL 121 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh
Confidence 578999887653 347888888765432 234665567889999999988 542 3477778888999999888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++|++|++++|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|+++++ +||||
T Consensus 122 ~-~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p-~nptG 188 (389)
T 1o4s_A 122 L-DPGDEVIVFSPVWVSYIP---QIILAGGTVNVVETFMSKNFQPSLEEVEGLLV--------GKTKAVLINSP-NNPTG 188 (389)
T ss_dssp C-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC--------TTEEEEEEESS-CTTTC
T ss_pred C-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEEecCCccCCCCCHHHHHHhcc--------cCceEEEEcCC-CCCCC
Confidence 7 589999999999887654 3677888999887764 46789999999998 67889988554 66999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCce--eeEEecCHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPV--GSVIVGSKEFIKKA 227 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~ 227 (359)
.++|.+++++|.++|+++|+++|+|++|+.+.......+...+. .+.|+++.|+||++|.++ .|++++++++.+.+
T Consensus 189 ~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l 268 (389)
T 1o4s_A 189 VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAV 268 (389)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHH
Confidence 99999999999999999999999999986544321122344442 256788889999998554 38899999999888
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
.........+. +...+.++..+++...++.++++.++++++.+.|+++ |+++.. +..+.++|+.++. +..++
T Consensus 269 ~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~----~~~~l 340 (389)
T 1o4s_A 269 SKIQSHTTSCI--NTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GVKFVE-PEGAFYLFFKVRG----DDVKF 340 (389)
T ss_dssp HHHHHHHTCSC--CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CSBSSEEEEECSS----CHHHH
T ss_pred HHHhhhcccCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCeeec-CCcceEEEEeCCC----CHHHH
Confidence 77665544443 3444555555665434546777888999999999998 887743 4467778888762 56788
Q ss_pred HHHHH-hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 308 LKKLE-EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 308 ~~~l~-~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++|. ++||.+.++. .+++|++++ .+++++++++++|.++++
T Consensus 341 ~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 341 CERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 99995 9999997763 458999996 589999999999998775
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=259.77 Aligned_cols=332 Identities=14% Similarity=0.162 Sum_probs=246.8
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC----C----CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG----K----EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~----~----~~~~~~~~gt~a~~~~l~~ 72 (359)
..+|||.++.+.. +++.+.+++.+.... ...|+..++..++++.++++++ . +..++++||++|+..++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~ 109 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLA 109 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 3578999987653 447788877664322 3346665667889999988873 2 2346777778999999998
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++|++|++++|+|.+... .++..|.+++.++.+. ++.+|+++|++.++ +++++|+++++ +|||
T Consensus 110 ~~-~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~p-~npt 176 (388)
T 1j32_A 110 MI-EPGDEVIIPAPFWVSYPE---MVKLAEGTPVILPTTVETQFKVSPEQIRQAIT--------PKTKLLVFNTP-SNPT 176 (388)
T ss_dssp HC-CTTCEEEEESSCCTHHHH---HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC--------TTEEEEEEESS-CTTT
T ss_pred hc-CCCCEEEEcCCCChhHHH---HHHHcCCEEEEecCCcccCCCCCHHHHHHhcC--------cCceEEEEeCC-CCCC
Confidence 87 599999999999887554 3677888888887654 57789999999998 67899998665 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh---cCccEEEEeccccCCCce--eeEEecCHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV---QAADSASVCLSKGLGAPV--GSVIVGSKEFI 224 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~---~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~ 224 (359)
|.++|.+++++|.++|++||+++|+|++|+.+..... ..+...+. .+.++++.|+||++|.++ .|++++++++.
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~ 256 (388)
T 1j32_A 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLV 256 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHH
Confidence 9999999999999999999999999999765433211 11222221 246788889999997554 38899999998
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.++........+. +...+.++..+++ .+.++.++++.++++++.+.|+++|++++.. +..+.++|+.++. .+
T Consensus 257 ~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~-~~ 332 (388)
T 1j32_A 257 KAATKIQGHSTSNV--CTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIAK-TG 332 (388)
T ss_dssp HHHHHHHHTTTCSC--CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC-CCBTTEECCBCGG-GT
T ss_pred HHHHHHHhhcccCC--CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCeeEEEEEecCC-CC
Confidence 88876655443333 4444555555553 3445567778889999999999988888743 4456677777753 12
Q ss_pred HHHHHHHHHHH-hcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLE-EHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 302 ~~~~~~~~~l~-~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+..++.++|. ++||.+.++. ..++|++++ .+++++++++++|+++++++
T Consensus 333 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 333 RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 36778999996 4899997753 578999995 79999999999999988765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=261.10 Aligned_cols=317 Identities=17% Similarity=0.123 Sum_probs=241.5
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhCC-C--CeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMGK-E--AGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~-~--~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
..+|||.++.+.. ++|.+.+++.+... ....|.. +...++++.+++++|. + ..++++||++++..++..++ +
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-~ 107 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA-R 107 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC-C
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc-C
Confidence 4579999886654 45888888877543 2334443 5678999999999998 3 34677778888888888887 5
Q ss_pred cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecC
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~ 155 (359)
+|++|+++.|+|.+... .++..|.+++.++.+.++.+|+++|++.++ + ++++|+++++ +||||.+++
T Consensus 108 ~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~~v~~~~~-~nptG~~~~ 175 (367)
T 3euc_A 108 PGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMA--------EHQPAIVYLAYP-NNPTGNLFD 175 (367)
T ss_dssp TTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHH--------HHCCSEEEEESS-CTTTCCCCC
T ss_pred CCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhh--------ccCCCEEEEcCC-CCCCCCCCC
Confidence 99999999999887654 367789999999888888999999999998 5 7899999654 669999999
Q ss_pred hhhHHHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhh-cCccEEEEeccccCCCcee--eEEecCHHHHHHHHHH
Q 018243 156 VEYTDSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLV-QAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRL 230 (359)
Q Consensus 156 ~~~l~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~ 230 (359)
.+++++|+++|++| |+++|+|++|..... .+ ....+. .+.++++.|+||+ +.++. |+++.++++.+.+...
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~-~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~ 251 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ES-WMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKV 251 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CC-SGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGG
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cc-hHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHh
Confidence 99999999999999 999999999754221 11 111221 1233566699999 55432 8888899988876544
Q ss_pred HHhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
... +..+...++++..+++ .+.++.+++..++++++.+.|+++|++++. +..++++|+.++ +..++.
T Consensus 252 ~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~~-----~~~~l~ 320 (367)
T 3euc_A 252 RPP----YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARVP-----DAAQTF 320 (367)
T ss_dssp CCS----SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC--CCSSSEEEEECS-----CHHHHH
T ss_pred CCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC-----CHHHHH
Confidence 332 2234555555555563 344557777888999999999999899863 457888888876 456888
Q ss_pred HHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 309 ~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
+.|.++||.+.+++ ..++|++++ +++++++++++|+++++
T Consensus 321 ~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 321 DRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp HHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 89999999997754 468999984 89999999999998764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=258.60 Aligned_cols=319 Identities=13% Similarity=0.103 Sum_probs=243.7
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
..+|||.++.+. .++|.+.+++.+.......|..... .++++.+++++|.+ ..++++||++++..++..++ ++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd 107 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDSM-IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL-NSKN 107 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-CTTC
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCh-HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh-CCCC
Confidence 357999977444 5669999999886554445554444 79999999999965 35777888889999888887 5999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeec-CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
+|+++.|+|.+... .++..|.+++.++. +.++ +|++++++.++ +++++|+++++ +||||.++|.++
T Consensus 108 ~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~~~~~ 174 (365)
T 3get_A 108 AFLQAGVTFAMYEI---YAKQCGAKCYKTQSITHNL-DEFKKLYETHK--------DEIKLIFLCLP-NNPLGECLDASE 174 (365)
T ss_dssp EEEECSSCCTHHHH---HHHHHTCEEEECSSSSCCH-HHHHHHHHHTT--------TTEEEEEEESS-CTTTCCCCCHHH
T ss_pred EEEEeCCChHHHHH---HHHHcCCEEEEEecCCCCC-CCHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCcCHHH
Confidence 99999999887654 36778889999987 5677 99999999998 78999999655 569999999888
Q ss_pred HHHHHHHHHHcCcEEEEecccccchh---hhcCchhHhhh--cCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHH
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAA---VALGVPVRRLV--QAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLR 231 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~ 231 (359)
+.+|+++| ++|+++|+|++|+.+.+ .....+..... .+.++++.|+||++|.++ + |+++.++++.+.++...
T Consensus 175 l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 253 (365)
T 3get_A 175 ATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLR 253 (365)
T ss_dssp HHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHS
T ss_pred HHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhc
Confidence 88888888 67999999999865442 11112222221 234466679999997543 2 88888999999887665
Q ss_pred HhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHH
Q 018243 232 KTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLK 309 (359)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
..++ .+...++++..+++ .+.++.++++.++++++.+.|+++ ++++. +..++++|+.++.. +..++.+
T Consensus 254 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~--~~~~~~~~~~~~~~---~~~~~~~ 323 (365)
T 3get_A 254 APFN----VSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII--DSYTNFITYFFDEK---NSTDLSE 323 (365)
T ss_dssp CTTC----SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC--CCSSSEEEEECSSS---CHHHHHH
T ss_pred CCCC----cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC--CCCCeEEEEECCCC---CHHHHHH
Confidence 5433 34455555555553 345557777888999999999999 88874 34678899998762 6788999
Q ss_pred HHHhcCceeccCC---CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 310 KLEEHGVLVMPES---STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 310 ~l~~~gi~~~~~~---~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.|.++||.+.++. ..++|++++ +++++++++++|++++
T Consensus 324 ~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 324 KLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 9988999998876 689999984 8999999999998876
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=262.40 Aligned_cols=324 Identities=16% Similarity=0.177 Sum_probs=244.9
Q ss_pred cccccccCCCCCC--hHHHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK--PTEAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~--~~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++++.. ++|.+.+++.+.... ...++..+...++++.++++++.+..+++++|++++..++.+
T Consensus 59 ~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~ 138 (409)
T 3kki_A 59 PDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQT 138 (409)
T ss_dssp TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred CceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 3578999987542 347777777664322 112344566789999999999999899999999999999998
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++||.|++++++|.+... + ....|.+++.++. .|+++|++.+++ .++++|++++ ++||||.
T Consensus 139 ~~-~~gd~Vl~~~~~~~~~~~-~--~~~~g~~~~~~~~-----~d~~~le~~l~~-------~~~~~vi~~~-~~nptG~ 201 (409)
T 3kki_A 139 IC-QPNTNVYIDFFAHMSLWE-G--ARYANAQAHPFMH-----NNCDHLRMLIQR-------HGPGIIVVDS-IYSTLGT 201 (409)
T ss_dssp HC-CTTCEEEEETTSCHHHHH-H--HHHTTCEEEEECT-----TCHHHHHHHHHH-------HCSCEEEEES-BCTTTCC
T ss_pred hc-CCCCEEEECCCcCHHHHH-H--HHHcCCeEEEecC-----CCHHHHHHHHHh-------cCCeEEEECC-CCCCCCC
Confidence 88 599999999999988765 3 6677888887765 389999999983 3478888865 5559999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+.+ +++|+++|++||++||+||+|+.+.+...+..... .....|+++.|+||+++++ ||++++++++++.+..
T Consensus 202 ~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~~~~~~~~ 277 (409)
T 3kki_A 202 IAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNNEVNRCVPF 277 (409)
T ss_dssp BCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSSGGGTHHH
T ss_pred cCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECHHHHHHHHH
Confidence 988 89999999999999999999876555433333222 2235678888999999975 7889998888877665
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+...++..++++..+++... ++.++++.++++++.+.|+++ ++++. ..++++++.++.. .+..++
T Consensus 278 ~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~~--~~~~~~ 351 (409)
T 3kki_A 278 ISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIR---SESQIIGLETGDE--RNTEKV 351 (409)
T ss_dssp HCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC---CSSSEEEEEEESH--HHHHHH
T ss_pred hCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC---CCCCEEEEEeCCH--HHHHHH
Confidence 433322222234455555555554321 346677888999999999998 87763 3788888888752 367789
Q ss_pred HHHHHhcCceec-------cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVM-------PESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 308 ~~~l~~~gi~~~-------~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.|.++||.+. +.+..++|++++..++++++++++++|+++++..
T Consensus 352 ~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 352 RDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp HHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 999988899984 3346789999988899999999999999998754
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=262.73 Aligned_cols=332 Identities=15% Similarity=0.082 Sum_probs=246.5
Q ss_pred ccccccCCCCC-----ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC-----C--CCeEEcCCchHHHHHH
Q 018243 4 RTVDLRSDTVT-----KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG-----K--EAGLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~~-----~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~-----~--~~~~~~~~gt~a~~~~ 69 (359)
.+|||..+.+. .+++.+++++.+.... ...|...++..++++.++++++ . +..++++||++|+..+
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~ 134 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLC 134 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHH
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHH
Confidence 46999988754 5568888888775433 2357667788999999999998 2 2347788889999999
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
+..++ ++|++|+++.|+|..... .+...|.+++.++.+ .++.+|++++++.++ +++++|++.++ +
T Consensus 135 ~~~l~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p-~ 201 (427)
T 3dyd_A 135 LAVLA-NPGQNILVPRPGFSLYKT---LAESMGIEVKLYNLLPEKSWEIDLKQLEYLID--------EKTACLIVNNP-S 201 (427)
T ss_dssp HHHHC-CTTCEEEEEESCCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHSSCC--------TTEEEEEEESS-C
T ss_pred HHHhc-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEEecccccCCCCCHHHHHHHhc--------cCCCEEEEECC-C
Confidence 99988 599999999999876543 377788898888654 456789999999988 67888888776 6
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCccEEE-EeccccCCCcee--eEEecC---
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAADSAS-VCLSKGLGAPVG--SVIVGS--- 220 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d~~~-~s~~K~~g~~~g--g~~~~~--- 220 (359)
||||..++.+++++|+++|+++|+++|+|++|..+.+... ..+...+....++++ .|+||.|++++. |+++++
T Consensus 202 nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~ 281 (427)
T 3dyd_A 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRR 281 (427)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECST
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcc
Confidence 6999999999999999999999999999999765433211 112333333344454 499999876542 666664
Q ss_pred ----HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 221 ----KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
+++.+.+....... .+ .+...++++...++ .+.++.++++.++++++.+.|+++|++.+.. +..++++
T Consensus 282 ~~~~~~i~~~l~~~~~~~-~~--~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-p~~g~~~ 357 (427)
T 3dyd_A 282 DIFGNEIRDGLVKLSQRI-LG--PCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR-PSGAMYL 357 (427)
T ss_dssp TSSHHHHHHHHHHHHHHH-CC--SCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CSBTTEE
T ss_pred hhhHHHHHHHHHHHHhcc-CC--CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC-CCeeEEE
Confidence 46777766554332 22 23344444444443 3445577778889999999999998998743 4578899
Q ss_pred EEEeccc---hHHHHHHHHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITED---SKLYAACLLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 293 ~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
|+.++.. .+.+..++.++| +++||.+.++ ..+++|+++. .+++++++++++|.++++++.
T Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 358 MVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp EEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence 9888631 113567888888 6899999776 3578999984 899999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=255.19 Aligned_cols=328 Identities=15% Similarity=0.156 Sum_probs=245.4
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCC--C-eEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKE--A-GLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~--~-~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
+.|....+..+++.+.+++.+.... .|+. .+...++++.+++++|.+ . .++++||++|+..++.+++ ++|++
T Consensus 21 ~~l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~-~~gd~ 97 (386)
T 2dr1_A 21 YKLFTAGPVACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV-SKGGK 97 (386)
T ss_dssp SEECCSSSCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS-CTTCE
T ss_pred ceeecCCCcCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh-cCCCe
Confidence 3445555666678999999886543 2322 355688889999999987 3 3677888999999999887 59999
Q ss_pred EEecCCCccee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 81 VILGDNSHIHI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 81 vl~~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
|++++++|.+. +. ..+...|++++.++.+.++.+|+++|++.+++. +++++|+++ .++||||.+.+ +
T Consensus 98 vl~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~-~~~nptG~~~~---l 165 (386)
T 2dr1_A 98 VLVTIIGAFGKRYK--EVVESNGRKAVVLEYEPGKAVKPEDLDDALRKN------PDVEAVTIT-YNETSTGVLNP---L 165 (386)
T ss_dssp EEEEESSHHHHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHC------TTCCEEEEE-SEETTTTEECC---H
T ss_pred EEEEcCCchhHHHH--HHHHHhCCceEEEecCCCCCCCHHHHHHHHhcC------CCCcEEEEE-eecCCcchhCC---H
Confidence 99999998762 33 336778989999988878889999999999521 578899996 45569999987 8
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHH----------
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKAR---------- 228 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~---------- 228 (359)
++|.++|++||+++|+|++|+++... .+...+ +.|+++.|+||++++|.| |++++++++.+.++
T Consensus 166 ~~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~~--~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 240 (386)
T 2dr1_A 166 PELAKVAKEHDKLVFVDAVSAMGGAD---IKFDKW--GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFD 240 (386)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTBC---CCTTTT--TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTC
T ss_pred HHHHHHHHHcCCeEEEEccccccCcc---cccccc--CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEe
Confidence 99999999999999999998765432 222222 678999999999998766 89999998887652
Q ss_pred ------HHH-HhhCCCcchhHHHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEE
Q 018243 229 ------RLR-KTLGGGMRQVGVLCAAALVALQE-----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYF 294 (359)
Q Consensus 229 ------~~~-~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~ 294 (359)
... ... .....+...++++..+++. ..++.++++.++++++.+.|+++ ++++..+.. .++++++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 318 (386)
T 2dr1_A 241 IPLYVKYLKEKES-TPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAV 318 (386)
T ss_dssp HHHHHHHHHHHSS-CSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEE
T ss_pred HHHHHHhhccCCC-CCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEE
Confidence 111 111 1112233444444444432 24457778889999999999998 887643321 4678888
Q ss_pred EeccchHHHHHHHHHHHHhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
.++. +.+..++.++|.++||.+.++ ...++|++++..++++++++++++|+++++++..+.
T Consensus 319 ~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 383 (386)
T 2dr1_A 319 LTPP--GIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELKKQK 383 (386)
T ss_dssp ECCT--TCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCC--CCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 8863 246788999998889999775 356899999877899999999999999999886543
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=256.87 Aligned_cols=322 Identities=14% Similarity=0.141 Sum_probs=241.5
Q ss_pred ccccccCCCC-C-ChHHHHHHHHHcCCCC------CCc--cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTV-T-KPTEAMRAAMASAEVD------DDV--LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~-~-~~~~~~~~a~~~~~~~------~~~--~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++.+ . .++|.+.+++.+.... ... ++..+...++++.+++++|.+..+++++|++++..++..+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~ 119 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM 119 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence 5789999764 4 3558888888664321 111 2456888999999999999988899999999999998887
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. ++|+.|+++.++|.+... .+...|.+++.++. .|+++|++.+++.. +++++|++ ++++||||.+
T Consensus 120 ~-~~gd~v~~~~~~~~~~~~---~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~-----~~~~~v~~-~~~~nptG~~ 184 (384)
T 1bs0_A 120 M-AKEDRIAADRLSHASLLE---AASLSPSQLRRFAH-----NDVTHLARLLASPC-----PGQQMVVT-EGVFSMDGDS 184 (384)
T ss_dssp C-CTTCEEEEETTCCHHHHH---HHHTSSSEEEEECT-----TCHHHHHHHHHSCC-----SSCEEEEE-ESBCTTTCCB
T ss_pred C-CCCcEEEEcccccHHHHH---HHHHcCCCEEEeCC-----CCHHHHHHHHHhcC-----CCCeEEEE-eCCCCCCCCc
Confidence 7 599999999999887664 26667888888874 38999999998421 13677777 4455699999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh-HhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV-RRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~ 232 (359)
++ +++|.++|++||+++|+|++|+.+.....+... ..+....|+++.|+||+++ +.||++++++++++.++....
T Consensus 185 ~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~~~~~~l~~~~~ 260 (384)
T 1bs0_A 185 AP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSSTVADYLLQFAR 260 (384)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECHHHHHHHHHHCH
T ss_pred cC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCHHHHHHHHHhch
Confidence 98 799999999999999999998665432222222 2222357888889999999 466889899999888776533
Q ss_pred hhCCCcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 233 TLGGGMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
.+..+...++..++++..+++. ..++.++++.++++++.+.|+++ ++++. +..++++++.++. +.+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~--~~~~~~l~ 335 (384)
T 1bs0_A 261 HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA--DSCSAIQPLIVGD--NSRALQLA 335 (384)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC--SCCSSBCCEEEES--HHHHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc--CCCCCEEEEEeCC--HHHHHHHH
Confidence 3322223345555555555543 33447778889999999999998 88764 3467788888764 35788999
Q ss_pred HHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 309 ~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++|.++||.+.++. ..++|++++..++++++++++++|+++
T Consensus 336 ~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 336 EKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp HHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 99988899997643 368999998778999999999999864
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=258.28 Aligned_cols=325 Identities=18% Similarity=0.148 Sum_probs=243.6
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CCC-----CeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GKE-----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~~-----~~~~~~~gt~a~~~~l~ 71 (359)
.+|||.++.+.. ++|.+.+++.+.... ...|+..++..++++.+++++ |.+ ..++++||++++..++.
T Consensus 26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~ 105 (376)
T 2dou_A 26 GLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLL 105 (376)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHH
Confidence 579999987654 458899999876543 233544457889999999988 874 34667777888888888
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++. ++|++|+++.|+|.+... .+...|.+++.++.++++.+|++++++.++ +++++|++++ ++||||
T Consensus 106 ~l~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~-p~nptG 172 (376)
T 2dou_A 106 ALT-EPEDLLLLPEVAYPSYFG---AARVASLRTFLIPLREDGLADLKAVPEGVW--------REAKVLLLNY-PNNPTG 172 (376)
T ss_dssp HHC-CTTCEEEEESSCCHHHHH---HHHHTTCEEEEECBCTTSSBCGGGSCHHHH--------HHEEEEEECS-SCTTTC
T ss_pred Hhc-CCCCEEEECCCCcHhHHH---HHHHcCCEEEEeeCCCCCCCCHHHHHHhhc--------cCceEEEECC-CCCCcC
Confidence 887 589999999999887654 366778899988874455689999999987 6889999965 467999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCce--eeEEecCHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPV--GSVIVGSKEFIKKA 227 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~ 227 (359)
.++|.+++++|+++|++||+++|+|++|..+.......+...+. .+.++++.|+||++|.++ .|++++++++++.+
T Consensus 173 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l 252 (376)
T 2dou_A 173 AVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARL 252 (376)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHH
Confidence 99999999999999999999999999986544321111222221 134466679999998543 28888999999998
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+......+.+. +...++++..+++ .+.++.++++.++++++.+.|+++ +.+. ++..+.++|+.++.. .+.
T Consensus 253 ~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~~~~~~~~~~~~~--~~~ 325 (376)
T 2dou_A 253 ERVKGVIDFNQ--YAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLL-PPRATMYLWGRLPEG--VDD 325 (376)
T ss_dssp HHHHHHHCCCS--CHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEEC-CCCBSSEEEEECCTT--CCH
T ss_pred HHHHHhcccCC--CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-CCCeeEEEEEECCCC--CCH
Confidence 87766555444 3344455555553 345556677888899999999887 6653 344677899988742 356
Q ss_pred HHHHHHHHhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++.++|.++||.+.++. ..++|++++ .+++++++++++|++++
T Consensus 326 ~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 326 LEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp HHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 789999988899997652 578999996 48999999999998765
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=265.48 Aligned_cols=331 Identities=13% Similarity=0.054 Sum_probs=247.4
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCC-CC-CccCCChHHHHHHHHHHHHhC--------CCCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEV-DD-DVLMHDPTAFRLETEMAKVMG--------KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~-~~-~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~l~ 71 (359)
..+|||.++.+..+ +|.+.+++.+... .. ..|....+..++++.++++++ .+..++++||++++..++.
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~ 123 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFL 123 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHH
Confidence 45799998866544 5888888877544 22 346555566899999999987 2234777778888888888
Q ss_pred Hhhh-hcCC--eEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 72 VHCE-TRGS--EVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 72 ~~~~-~~g~--~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.++. ++|+ +|+++.|+|.+... .+...|.+++.++.+ +++.+|+++|++.+++ +++++|+++++ +
T Consensus 124 ~l~~~~~gd~~~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~~v~l~~p-~ 192 (437)
T 3g0t_A 124 VANRTHKNREYGTLFIDPGFNLNKL---QCRILGQKFESFDLFEYRGEKLREKLESYLQT-------GQFCSIIYSNP-N 192 (437)
T ss_dssp HHTTSCTTCSCCEEEEESCCHHHHH---HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT-------TCCCEEEEESS-C
T ss_pred HHhcCCCCCccEEEEeCCCcHhHHH---HHHHcCCEEEEEeecCCCCccCHHHHHHHHhc-------CCceEEEEeCC-C
Confidence 8761 3899 99999999887654 366788899999875 4456899999999943 68899988666 6
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh-------Hhhh--cCccEEEEeccccCCCce-e-eE
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV-------RRLV--QAADSASVCLSKGLGAPV-G-SV 216 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-------~~~~--~~~d~~~~s~~K~~g~~~-g-g~ 216 (359)
||||.+++.+++++|+++|++||+++|+|++|+.+.+. ...+. ..+. .+.++++.|+||++|.++ + |+
T Consensus 193 nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 271 (437)
T 3g0t_A 193 NPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR-KDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGV 271 (437)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTT-SCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccC-CCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEE
Confidence 79999999999999999999999999999998654433 11122 2221 234466779999998543 2 88
Q ss_pred EecCHHHHH-H-----------------HHHHHHhhCCCcchhHHHHHHHHHHHHH---h---HHHHhhhHHHHHHHHHH
Q 018243 217 IVGSKEFIK-K-----------------ARRLRKTLGGGMRQVGVLCAAALVALQE---N---VLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 217 ~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~---~~~~~~~~~~~~~~l~~ 272 (359)
+++++++++ . +.........+. +...+.++...++. + .+..++++.++++++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (437)
T 3g0t_A 272 LMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGA--THSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKK 349 (437)
T ss_dssp EEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSS--CHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCC--CHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888 6 555444333333 33444444444432 2 55577888899999999
Q ss_pred HHhcCCCceEe------cCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC------cEEEEEeCCCCCHHHHH
Q 018243 273 GLNQLKGLRVD------VDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS------TRVRIVVHHQISANDVH 340 (359)
Q Consensus 273 ~l~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~------~~lRi~~~~~~~~~~i~ 340 (359)
.|+++ |+++. .++..++++|+.++. .+..++.+.|.++||.+.++.. .++|++++ ..++++++
T Consensus 350 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~ 424 (437)
T 3g0t_A 350 MFLDN-GFNIVYDKDGNEPLADGFYFTVGYKG---MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTS-LLPESQFP 424 (437)
T ss_dssp HHHTT-TEEESSCEETTEECCSSSEEEEEETT---CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECS-SSCGGGHH
T ss_pred HHHHc-CCEEeccccCCCCCceeEEEEEecCC---CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEe-cCCHHHHH
Confidence 99999 88875 243578899999873 4788999999889999977642 67999998 45999999
Q ss_pred HHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAG 352 (359)
Q Consensus 341 ~~~~~l~~~~~~ 352 (359)
+++++|++++++
T Consensus 425 ~~~~~l~~~~~~ 436 (437)
T 3g0t_A 425 DLEKRLQMLNAE 436 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=262.27 Aligned_cols=330 Identities=14% Similarity=0.134 Sum_probs=245.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC--------CCccCC--ChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD--------DDVLMH--DPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~--~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
+++|.++.+..+++.+.+++.+.... ...|+. .+...++++.++++++. +..++++||++|+..++.
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 108 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY 108 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence 68999887776668888888764321 112332 35678999999999998 456888889999999999
Q ss_pred Hh----hhhcCCeEEecCCCcceeecc-ccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 72 VH----CETRGSEVILGDNSHIHIYEN-GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 72 ~~----~~~~g~~vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.+ . ++|++|+++.++|.+.... ...+...|.+++.++.+.++.+|+++|++.++ +++++|++++ +
T Consensus 109 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-~ 178 (420)
T 1t3i_A 109 SWGMNNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS--------EKTKLVTVVH-I 178 (420)
T ss_dssp HTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC--------TTEEEEEEES-B
T ss_pred Hhhhccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhC--------CCceEEEEeC-C
Confidence 98 5 5899999999999885310 02355678899999888888899999999998 6889998855 5
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKK 226 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~ 226 (359)
+||||.+++ +++|.++|++||+++|+|++|+++... .....+ +.|+++.|+||.+|++++|+++.++++.+.
T Consensus 179 ~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~~--~~di~~~s~sK~~~~~g~G~~~~~~~~~~~ 250 (420)
T 1t3i_A 179 SNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP---LDVQLI--DCDWLVASGHKMCAPTGIGFLYGKEEILEA 250 (420)
T ss_dssp CTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHH--TCSEEEEEGGGTTSCTTCEEEEECHHHHHH
T ss_pred cccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc---Cchhhc--CCCEEEEehhhhcCCCceEEEEEchHHHhh
Confidence 569999998 899999999999999999998765432 123333 589999999997775444899999988877
Q ss_pred HHHHHHhhC------------------CCcchhHHHHHHHHH-HH---HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 227 ARRLRKTLG------------------GGMRQVGVLCAAALV-AL---QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 227 ~~~~~~~~~------------------~~~~~~~~~~~~~~~-~l---~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
++......+ .....++..+.++.. ++ +. ..+...++..++++++.+.|+++|++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 330 (420)
T 1t3i_A 251 MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLY 330 (420)
T ss_dssp SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred cCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 643322110 001122233333222 23 22 34446777888999999999998899876
Q ss_pred cCC----ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-----------C-CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 284 VDA----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-----------S-STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 284 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----------~-~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.+. ..++++++.++. .+..++.+.|.++||.+.++ + ..++|++++..++++++++++++|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~ 407 (420)
T 1t3i_A 331 GPNPKHGDRAALASFNVAG---LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQ 407 (420)
T ss_dssp SCCGGGSCBCSEEEEEETT---BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCccccccCCEEEEEECC---CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 443 137777777764 35678889999999999876 2 6789999987789999999999999
Q ss_pred HHHHHHHh
Q 018243 348 KIYAGVCE 355 (359)
Q Consensus 348 ~~~~~~~~ 355 (359)
++++++++
T Consensus 408 ~~~~~~~~ 415 (420)
T 1t3i_A 408 ATIRFFSD 415 (420)
T ss_dssp HHHHHTC-
T ss_pred HHHHHhcC
Confidence 99987744
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=257.35 Aligned_cols=328 Identities=16% Similarity=0.184 Sum_probs=244.7
Q ss_pred ccccccCCCC-CC-hHHHHHHHHHcCCCC----CC----ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTV-TK-PTEAMRAAMASAEVD----DD----VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~-~~-~~~~~~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++.+ .. +++.+.+++.+.... .. ..+..+...++++.+++++|.+..++++||++|+..++..+
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~ 123 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL 123 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHS
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH
Confidence 5789999876 44 557888877664321 11 12335667899999999999988899999999999999998
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++|+.|++++|+|.+... .+...|.+++.++. +|+++|++.+++..+ .++++|+++++ +||||.+
T Consensus 124 ~-~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~----~~~~~v~~~~~-~nptG~~ 189 (398)
T 3a2b_A 124 M-GRNDYILLDERDHASIID---GSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE----DSAKLICTDGI-FSMEGDI 189 (398)
T ss_dssp S-CTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-----TCHHHHHHHHHTSCS----SSCEEEEEESB-CTTTCCB
T ss_pred h-CCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-----CCHHHHHHHHHhhcc----CCceEEEEeCC-CCCCCCc
Confidence 7 599999999999988664 36778889888875 489999999984210 16888888665 5699999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh---cCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV---QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
.+ +++|.++|++||+++|+|++|+.+.+...+.+..... ..+|+++.|+||+++ +.||++++++++++.+...
T Consensus 190 ~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~~~~~~l~~~ 265 (398)
T 3a2b_A 190 VN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDADVIDFLKHN 265 (398)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECHHHHHHHHHH
T ss_pred cC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCHHHHHHHHHh
Confidence 87 8999999999999999999987654422233332221 235888889999999 4558899999998888764
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQEN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...+..+...++...+++..+++.. .++.++++.++++++.+.|+++ |+++.. ..++++|+.++. +.+..++.
T Consensus 266 ~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~g~~~~~~~~~--~~~~~~l~ 340 (398)
T 3a2b_A 266 ARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA--TESPILPIFIRS--NEKTFWVT 340 (398)
T ss_dssp CHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS--CCSSEEEEECCC--HHHHHHHH
T ss_pred cccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC--CCCCEEEEEcCC--HHHHHHHH
Confidence 2222222222333333344444332 2246677888999999999998 887643 357889998864 35788999
Q ss_pred HHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 309 ~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.|.++||.+.++. ..++|++++..++++++++++++|+++++++.
T Consensus 341 ~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 341 KMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp HHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99988899997763 36799999877899999999999999988764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=259.57 Aligned_cols=333 Identities=21% Similarity=0.194 Sum_probs=242.8
Q ss_pred ccccccCCCCC---ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHh----CC----CCeEEcCCchHHHHH
Q 018243 4 RTVDLRSDTVT---KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVM----GK----EAGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~~~---~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----~~----~~~~~~~~gt~a~~~ 68 (359)
.+|||.++.+. .|++.+.+++.+.... .. |+..++..++++.+++++ |. +..++++||++|+..
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~ 113 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDL 113 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHH
Confidence 57999887543 3668888877664322 23 666667899999999998 73 234666777899999
Q ss_pred HHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhc----CCCCCccCCceeEEEEec
Q 018243 69 SVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIR----DPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 69 ~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~v~i~~ 144 (359)
++..++ ++|++|+++.|+|.+... .+...|.+++.++.+.++ +|+++|++.++ +. .++++|++.+
T Consensus 114 ~~~~~~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~------~~~~~v~~~~ 182 (407)
T 2zc0_A 114 LGRVLI-DPGDVVITENPSYINTLL---AFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKG------QKVKLIYTIP 182 (407)
T ss_dssp HHHHHC-CTTCEEEEEESCCHHHHH---HHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTT------CCEEEEEECC
T ss_pred HHHHhc-CCCCEEEEeCCChHHHHH---HHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhccc------CCceEEEECC
Confidence 999887 589999999999887654 367788899888776554 89999999987 31 3678886557
Q ss_pred cccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhhc-CccEEEEeccccCCCce--eeEEecC
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQ-AADSASVCLSKGLGAPV--GSVIVGS 220 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~-~~d~~~~s~~K~~g~~~--gg~~~~~ 220 (359)
.++||||.++|.+++++|+++|++||+++|+|++|..+...... .+...+.. +.++++.|+||+++ ++ .|+++++
T Consensus 183 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~ 261 (407)
T 2zc0_A 183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAE 261 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecC
Confidence 77889999999999999999999999999999997654332111 12333321 22355669999999 43 3889999
Q ss_pred HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH------hHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEE
Q 018243 221 KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE------NVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVY 293 (359)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~ 293 (359)
+++.+.+.......+.+. +...+.++...++. +.++.++++.++++++.+.|++ .|++.+.. +..++++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~ 338 (407)
T 2zc0_A 262 GEILKKVLMQKQPIDFCA--PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVM 338 (407)
T ss_dssp HHHHHHHHHHHTTTTSSS--CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEE
T ss_pred HHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEE
Confidence 999988876655443333 33444444444432 3334555667788899999987 57777643 45678899
Q ss_pred EEeccchHHHHHHHHHHHHhc-CceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 294 FEITEDSKLYAACLLKKLEEH-GVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~-gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+.++. +.+..++.+.|.++ ||.+.++ +..++|++++.. +++++++++++|+++++++.+
T Consensus 339 ~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 406 (407)
T 2zc0_A 339 FFLPE--GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKFG 406 (407)
T ss_dssp EECST--TCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC-
T ss_pred EEcCC--CCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 99864 24677899999766 9999765 356899999744 899999999999999987643
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=260.31 Aligned_cols=329 Identities=16% Similarity=0.081 Sum_probs=245.8
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHh----CCC-----CeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVM----GKE-----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~----~~~-----~~~~~~~gt~a~~~~l~ 71 (359)
++|||.++.+.. ++|.+.+++.+..... ..|+..++..++++.+++++ |.+ ..++++||++++..++.
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~ 127 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPT 127 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHH
Confidence 479999987653 4588999988765332 23555557789999999988 864 34667777888999988
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
.++ ++|++|+++.|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|++++ ++|||
T Consensus 128 ~l~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~-p~npt 194 (404)
T 2o1b_A 128 CVI-NPGDYVLLPDPGYTDYLA---GVLLADGKPVPLNLEPPHYLPDWSKVDSQII--------DKTKLIYLTY-PNNPT 194 (404)
T ss_dssp HHC-CTTCEEEEEESCCSSHHH---HHHHTTCEEEEEECCTTTCCCCGGGSCHHHH--------HHEEEEEECS-SCTTT
T ss_pred Hhc-CCCCEEEEcCCCchhHHH---HHHHCCCEEEEeccCcccCcCCHHHHHHhhc--------cCceEEEEcC-CCCCC
Confidence 887 589999999999887654 2667788998887764 44579999999997 6889999965 56799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCce-e-eEEecCHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPV-G-SVIVGSKEFIKK 226 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~ 226 (359)
|.++|.+++++|+++|+++|++||+|++|..+.+.....+...+. .+.++++.|+||++|.++ . |++++++++++.
T Consensus 195 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 274 (404)
T 2o1b_A 195 GSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQA 274 (404)
T ss_dssp CCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHH
Confidence 999999999999999999999999999986543321112233321 134567779999998543 2 888899999998
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
++........+. +...++++..+++ .+.++.++++.++++++.+.|+++ ++++.. +..+.++|+.++. +.+
T Consensus 275 l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~--~~~ 348 (404)
T 2o1b_A 275 LKKYQTHTNAGM--FGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH-AKGGIYVWLETPP--GYD 348 (404)
T ss_dssp HHHHHHHHCCCC--CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CCBSSEEEEECCT--TCC
T ss_pred HHHHHhhccCCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC-CCcceEEEEeCCC--CCC
Confidence 887666555444 3344444444443 345556677888899999999998 887743 4456678988864 245
Q ss_pred HHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 304 ~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..++.++|. ++||.+.++. ..++|++++ .+++++++++++|+++++++
T Consensus 349 ~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 349 SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLA--LDDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECC--SCTTHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHhh
Confidence 678888885 7899997752 578999996 37889999999999887754
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=257.16 Aligned_cols=328 Identities=18% Similarity=0.162 Sum_probs=239.5
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhCC--------CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMGK--------EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~~l~~~ 73 (359)
..|||..+.+..+ ++.+.+++.+... ....|....+..++++.++++++. +..++++||++++..++.++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l 111 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI 111 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh
Confidence 5689988876543 3777777765432 223465556678999999998742 23467777888998888888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++||+|+++.|+|..... .++..|.+++.++.+. ++.+|+++|++.++ +++++|++++ ++||||
T Consensus 112 ~-~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-p~NPtG 178 (385)
T 1b5p_A 112 L-DPGDEVIVLSPYWVSYPE---MVRFAGGVVVEVETLPEEGFVPDPERVRRAIT--------PRTKALVVNS-PNNPTG 178 (385)
T ss_dssp C-CTTCEEEEEESCCTHHHH---HHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC--------TTEEEEEEES-SCTTTC
T ss_pred c-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEeecCcccCCCCCHHHHHHhcC--------CCCEEEEEeC-CCCCCC
Confidence 7 599999999999876543 3677898999998763 56789999999988 6788998865 466999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce--eeEEecCHHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV--GSVIVGSKEFIKKARR 229 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~ 229 (359)
.++|.+++++|.++|++||++||+|++|+.........+...+..+.++++.|+||.+|.++ .||+++++++++.+..
T Consensus 179 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~ 258 (385)
T 1b5p_A 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMAS 258 (385)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHH
Confidence 99999999999999999999999999975433211111223332223455669999998654 2899999999988877
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQ------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
.......+. +...+.++..+++ .+.++.++++.++++++.+.|+++ |+++. ++..++++|+.++. .+.+
T Consensus 259 ~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-~~~~ 333 (385)
T 1b5p_A 259 VSRQSTTSP--DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV-RPSGAFYVLMDTSP-IAPD 333 (385)
T ss_dssp HHHTTTCSC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSBTTEEEEECTT-TCSS
T ss_pred HHhhccCCC--CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEecCC-CCCC
Confidence 655443333 3333444433442 234446677888899999999988 88764 34567788888863 1246
Q ss_pred HHHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.+.|.++||.+.++. .+++||++. .+++++++++++|+++++
T Consensus 334 ~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 334 EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp HHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred HHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 7789999999999997764 468999985 889999999999887664
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=261.60 Aligned_cols=332 Identities=15% Similarity=0.077 Sum_probs=244.1
Q ss_pred ccccccCCCC---C-ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC------C--CCeEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTV---T-KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG------K--EAGLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~---~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~------~--~~~~~~~~gt~a~~~~l 70 (359)
++|||.++.+ . .+++.+.+++.+.... ...|+..++..++++.++++++ . +..++++||++|+..++
T Consensus 39 ~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~ 118 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIF 118 (406)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHH
Confidence 5789998876 3 3347778777664432 2246655667899999999873 2 23477777889999999
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ ++|++|++++|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|+++++ +|
T Consensus 119 ~~l~-~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~i~~p-~n 185 (406)
T 1xi9_A 119 GALL-DPGDEILVPGPSYPPYTG---LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT--------DRTKAIAVINP-NN 185 (406)
T ss_dssp HHHC-CTTCEEEEEESCCHHHHH---HHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC--------TTEEEEEEESS-CT
T ss_pred HHhC-CCCCEEEEcCCCCccHHH---HHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC--------cCceEEEEECC-CC
Confidence 8887 589999999999887554 3667888988887653 45689999999998 67899988654 66
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCc-cEEEEeccccCCCce--eeEEe--cCH--
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAA-DSASVCLSKGLGAPV--GSVIV--GSK-- 221 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~-d~~~~s~~K~~g~~~--gg~~~--~~~-- 221 (359)
|||.+++.+++++|.++|++||+++|+|++|..+.......+...+..+. ++++.|+||++|.++ .|+++ .++
T Consensus 186 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 265 (406)
T 1xi9_A 186 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENK 265 (406)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCT
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchh
Confidence 99999999999999999999999999999986644321112333332234 567779999998543 27777 888
Q ss_pred --HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEe
Q 018243 222 --EFIKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEI 296 (359)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
++++.+....... .+. +...+.++..+++ ...++.++++.++++++.+.|+++|++++.. +..+.++|+.+
T Consensus 266 ~~~l~~~l~~~~~~~-~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~ 341 (406)
T 1xi9_A 266 LSEVREAIDRLARIR-LCP--NTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKI 341 (406)
T ss_dssp THHHHHHHHHHHHHT-CCS--CSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEE
T ss_pred HHHHHHHHHHHHHhh-cCC--CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEec
Confidence 8988887665543 332 3344444455553 2344466778888999999999988888743 44566777777
Q ss_pred ccchHHHHHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+...+.+..++.+.|. ++||.+.++. ..++|++++ .+++++++++++|+++++++.
T Consensus 342 ~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 342 EVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp CSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred CccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 6300136778998885 9999997753 578999996 899999999999999988764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=257.44 Aligned_cols=321 Identities=13% Similarity=0.049 Sum_probs=239.8
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CC----CCeEEcCCchHHHHHHHHHhh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GK----EAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~----~~~~~~~~gt~a~~~~l~~~~ 74 (359)
.+|||.++.+.. ++|.+.+++.+.......|+...+..++++.+++++ |. +..++++||++++..++..++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~ 103 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL 103 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc
Confidence 578999886654 458999999887644445666566788888888877 64 234788888899999999888
Q ss_pred hhc--CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 75 ETR--GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 75 ~~~--g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ |++|+++.|+|.+... .+...|.+++.++.+.++.+++ ++++.++ +++++|+++++ +||||.
T Consensus 104 -~~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~--------~~~~~v~~~~p-~nptG~ 169 (376)
T 3ezs_A 104 -FDYQNPTIAYPNPFYQIYEG---AAKFIKAKSLLMPLTKENDFTP-SLNEKEL--------QEVDLVILNSP-NNPTGR 169 (376)
T ss_dssp -TTCSSCEEEEEESCCTHHHH---HHHHTTCEEEEEECCGGGTSCC-CCCHHHH--------HHCSEEEECSS-CTTTCC
T ss_pred -CCCCCCEEEEecCCcHhHHH---HHHHcCCEEEEcccCCCCCcch-hHHhhhc--------cCCCEEEEcCC-CCCcCC
Confidence 58 9999999999887654 3677888999998776545555 6777777 67889999654 679999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-------hcCccEEEEeccccCCCce-e-eEEecCHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-------VQAADSASVCLSKGLGAPV-G-SVIVGSKEF 223 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-------~~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~ 223 (359)
+++.+++++|+++|++||+++|+||+|..+.......+.... ..+.++++.|+||++|.++ + |++++++++
T Consensus 170 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 249 (376)
T 3ezs_A 170 TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRL 249 (376)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHH
Confidence 999999999999999999999999998654443222222222 1244566779999997543 2 888899999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
.+.+.......+.+. +...++++..+++ ...++.++++.++++++.+.|+ ++. .+..++++|+.++
T Consensus 250 ~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~---~~~~~~~~~~~~~---- 317 (376)
T 3ezs_A 250 LEKYKAFRAYLGYTS--ANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL---IYPYSFYVYLPVQ---- 317 (376)
T ss_dssp HHHHHHHHTTTCCCC--CHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC---CCSBSSEEEEECS----
T ss_pred HHHHHHHHhhhcCCC--ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC---CCCcceEEEEECC----
Confidence 999877665544444 4445555555553 3345566777888888888887 444 3568889999886
Q ss_pred HHHHHHHHHHHh-cCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLEE-HGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 302 ~~~~~~~~~l~~-~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+..++.+.|.+ +||.+.++ +..++|++++ .+++++++++++|++++++.
T Consensus 318 -~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 318 -NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp -CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC-
T ss_pred -CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence 35678888866 99999654 4578999996 49999999999999988653
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=258.88 Aligned_cols=333 Identities=16% Similarity=0.102 Sum_probs=238.1
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC------C--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG------K--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~------~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++.+..+ +|.+.+++.+.... ...|+...+..++++.++++++ . +..++++||++|+..++..
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 110 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTA 110 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHH
Confidence 36799999877655 48899998875543 3345555567899999998874 2 2357888888999999998
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++ ++||+|+++.|+|.+... .+...|.+++.++.+.+ +.+|+++|++. ++++|+++++ +|||
T Consensus 111 l~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-----------~~~~v~i~~p-~npt 174 (391)
T 3h14_A 111 LF-DSGDRVGIGAPGYPSYRQ---ILRALGLVPVDLPTAPENRLQPVPADFAGL-----------DLAGLMVASP-ANPT 174 (391)
T ss_dssp HC-CTTCEEEEEESCCHHHHH---HHHHTTCEEEEEECCGGGTTSCCHHHHTTS-----------CCSEEEEESS-CTTT
T ss_pred hc-CCCCEEEEcCCCCccHHH---HHHHcCCEEEEeecCcccCCCCCHHHHHhc-----------CCeEEEECCC-CCCC
Confidence 87 599999999999887654 36778989999977643 46788877653 4678888655 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc-ee-eEEecCHHHHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP-VG-SVIVGSKEFIKKAR 228 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~ 228 (359)
|.+++.+++++|+++|++||+++|+|++|..+.......+...+ ....+++.|+||++|.+ .+ |+++.++++.+.+.
T Consensus 175 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 253 (391)
T 3h14_A 175 GTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL-TDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVE 253 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc-CCCEEEEEechhccCCccceeEEEEeCHHHHHHHH
Confidence 99999999999999999999999999998654432222222222 23346666999999743 33 88999999999888
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
........+.+ ...+.++..++ ....++.++++.++++++.+.|+++ ++.....+..+.++|+.++. .+.+..+
T Consensus 254 ~~~~~~~~~~~--~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 329 (391)
T 3h14_A 254 RIAQNMFICAP--HASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSD-LTDDSRA 329 (391)
T ss_dssp HHHHHTTCCCC--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTT-TCSCHHH
T ss_pred HHHhhhccCCC--HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCc-cCCCHHH
Confidence 77666555543 33333443444 3445557777888999999999988 55443345567788888864 1246788
Q ss_pred HHHHHHh-cCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 307 LLKKLEE-HGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 307 ~~~~l~~-~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
+.++|.+ +||.+.++ +..++|++++ .+++++++++++|++++++....++
T Consensus 330 ~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~~~~~~~~~~ 387 (391)
T 3h14_A 330 FAAEILEKAGVAVTPGLDFDPERGAGTLRFSYA--RATADIEEGLDRLEAFMQARGEGHH 387 (391)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHCCEEEcCchhhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhccccc
Confidence 9888754 69999764 2568999996 4889999999999999998776544
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=257.43 Aligned_cols=332 Identities=16% Similarity=0.177 Sum_probs=245.4
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHh----CC-----CCeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVM----GK-----EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~----~~-----~~~~~~~~gt~a~~~~l~ 71 (359)
.+|||.++.+.. ++|.+.+++.+..... ..|+..++..++++.+++++ |. +..++++||++|+..++.
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~ 117 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLML 117 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHH
Confidence 468999987653 4589999998866432 34655667889999999998 74 245788888899999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
.++ ++|++|+++.|+|.+... .+...|.+++.++.+.+ +.+|+++|++.++ +++++|+++++ +||
T Consensus 118 ~~~-~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~l~~p-~np 184 (412)
T 2x5d_A 118 ATL-DHGDTILVPNPSYPIHIY---GAVIAGAQVRSVPLVPGIDFFNELERAIRESI--------PKPRMMILGFP-SNP 184 (412)
T ss_dssp HHC-CTTCEEEEEESCCHHHHH---HHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE--------SCCSEEEEESS-CTT
T ss_pred HhC-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEeecCCccCCCCCHHHHHHhcc--------cCceEEEECCC-CCC
Confidence 887 589999999999887654 36677888888877654 2368899999888 67889998655 679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhh--cCccEEEEeccccCCCce-e-eEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLV--QAADSASVCLSKGLGAPV-G-SVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~--~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~ 224 (359)
||.+++.+++++|+++|++||+++|+|++|..+.+.. ...+...+. .+.++++.|+||++|.++ . |+++++++++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 264 (412)
T 2x5d_A 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELV 264 (412)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHH
Confidence 9999999999999999999999999999986654321 122333332 245677789999998543 2 8888999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch-
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS- 300 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~- 300 (359)
+.+.........+. +...+.++..+++ .+.++.++++.++++++.+.|+++ ++.+. ++..+.++|+.++...
T Consensus 265 ~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 265 SALARIKSYHDYGT--FTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE-NPKASMYVWAKIPEPYA 340 (412)
T ss_dssp HHHHHHHHHHCCCC--CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-CCSBSSEEEEECCTTTG
T ss_pred HHHHHHHhhhccCC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-CCCeeeEEEEEcCCccC
Confidence 98877665544444 3344445555554 345556777888999999999988 87764 3445678899886420
Q ss_pred HHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
..+..++.+.| .++||.+.++ +..++|++++ .+++++++++++|+++++++.
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALI--ENRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhcC
Confidence 01567899998 5689999765 2568999996 389999999999999998754
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=258.23 Aligned_cols=327 Identities=12% Similarity=0.060 Sum_probs=238.7
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhC------C--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMG------K--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~------~--~~~~~~~~gt~a~~~~l~~ 72 (359)
..+|||.++.... ++|.+.+++.+.... ...|+. .. .++++.++++++ . +..++++||++++..++..
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~ 100 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDH 100 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHH
Confidence 4679999886654 458888888775433 334554 44 788888888876 3 2457788888999999988
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++ ++|++|+++.|+|.+... .+...|.+++.++.+.+ +|+++|++.++ +++++++++++ +||||.
T Consensus 101 ~~-~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~--~d~~~l~~~l~--------~~~~~v~i~~p-~nptG~ 165 (377)
T 3fdb_A 101 FT-PAQSKVIVPTPAYPPFFH---LLSATQREGIFIDATGG--INLHDVEKGFQ--------AGARSILLCNP-YNPLGM 165 (377)
T ss_dssp HS-CTTCCEEEEESCCTHHHH---HHHHHTCCEEEEECTTS--CCHHHHHHHHH--------TTCCEEEEESS-BTTTTB
T ss_pred hc-CCCCEEEEcCCCcHhHHH---HHHHcCCEEEEccCCCC--CCHHHHHHHhc--------cCCCEEEEeCC-CCCCCC
Confidence 87 599999999999888654 36777889999987766 89999999999 56888888776 669999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhh-cCccEEEEeccccCCCcee--eEEe-cCHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLV-QAADSASVCLSKGLGAPVG--SVIV-GSKEFIKK 226 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~-~~~d~~~~s~~K~~g~~~g--g~~~-~~~~~~~~ 226 (359)
+++.+++++|+++|++||+++|+|++|..+.... ...+...+. .+.++++.|+||++|.++. |+++ .++++.+.
T Consensus 166 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~ 245 (377)
T 3fdb_A 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEH 245 (377)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHH
Confidence 9999999999999999999999999976543321 111222221 1233666799999975432 6555 58888888
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccchHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
++........+. +...++++..+++ .+.++.+++..++++++.+.|++ +|++++.. +..+.++|+.++.. +.
T Consensus 246 ~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 321 (377)
T 3fdb_A 246 WQQLSPVIKDGA--STLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP-MQATYLMWIDFRDT-TI 321 (377)
T ss_dssp HHHSCHHHHCCC--CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-CSBCSEEEEECTTS-CC
T ss_pred HHHHHHhhcCCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCeeEEEEEECccc-CC
Confidence 776554443333 3344444444443 34455777788899999999998 78988753 44666778888752 12
Q ss_pred HHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 303 ~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+ .++.+.| +++||.+.++. ..++|++++ .+++++++++++|+++++++
T Consensus 322 ~-~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 322 E-GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp C-SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTTC
T ss_pred C-HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 2 4667777 55699997653 578999996 58999999999999988653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=261.89 Aligned_cols=327 Identities=16% Similarity=0.113 Sum_probs=243.4
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l~ 71 (359)
..+|||..+.+.. +++.+.+++.+.... ...|+...+..++++++++++ |.+ ..++++||++|+..++.
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~ 136 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLM 136 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence 3579999886543 348888888876543 234666666789999999987 332 24667777899999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC------------CCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ------------DGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
.++ ++||+|++++|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++
T Consensus 137 ~l~-~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~ 204 (447)
T 3b46_A 137 GLL-NAGDEVIVFEPFFDQYIP---NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT--------SKTKA 204 (447)
T ss_dssp HHC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC--------TTEEE
T ss_pred HHc-CCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc--------cCCeE
Confidence 887 599999999999877553 3677888888887543 45789999999987 68999
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCce--e
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPV--G 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~--g 214 (359)
|++++ ++||||.+++.+++++|+++|++||++||+||+|....+.....+...+ ..+.++++.|+||++++++ .
T Consensus 205 v~l~~-p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ri 283 (447)
T 3b46_A 205 VIINT-PHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRI 283 (447)
T ss_dssp EEEES-SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCC
T ss_pred EEEeC-CCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhh
Confidence 99965 5679999999999999999999999999999998654332111233322 2356788889999998654 2
Q ss_pred eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc
Q 018243 215 SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288 (359)
Q Consensus 215 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~ 288 (359)
||+++ ++++++.+.........+. +...+.++..+++ .+.++.++++.++++++.+.|+++ |+++. .+..
T Consensus 284 G~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~ 359 (447)
T 3b46_A 284 GWVLSLNAELLSYAAKAHTRICFAS--PSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYT-APEG 359 (447)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTSSC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEE-CCSB
T ss_pred EEEEeCCHHHHHHHHHHHhhccCCC--ChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCe
Confidence 88999 9999998876655444444 3333444444443 334556777888999999999998 88875 3557
Q ss_pred ceEEEEEeccc---h----------HHHHHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHHHHHHH
Q 018243 289 TNIVYFEITED---S----------KLYAACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISANDVHYTL 343 (359)
Q Consensus 289 ~~~~~~~~~~~---~----------~~~~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i~~~~ 343 (359)
+.++|+.++.. . ..+..++.++| .++||.+.|++ .+++|+++. .+++++++++
T Consensus 360 g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~ 437 (447)
T 3b46_A 360 TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAV 437 (447)
T ss_dssp SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHH
T ss_pred eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHH
Confidence 88999988641 0 13567888888 47899997762 578999995 5899999999
Q ss_pred HHHHH
Q 018243 344 SCFQK 348 (359)
Q Consensus 344 ~~l~~ 348 (359)
++|++
T Consensus 438 ~~l~~ 442 (447)
T 3b46_A 438 ERLKL 442 (447)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 99976
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=254.30 Aligned_cols=326 Identities=15% Similarity=0.095 Sum_probs=242.5
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CC----C-CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GK----E-AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~----~-~~~~~~~gt~a~~~~l~~ 72 (359)
.+|||.++.+. .+++.+.+++.+.... ...|+...+..++++.+++++ |. + ..++++||++++..++..
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~ 110 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITA 110 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHH
Confidence 57899988665 3458888888765432 334655556788999999885 53 2 457778888899999988
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ ++|++|++++|+|.+... .++..|.+++.++.+. ++.+|+++|++.++ +++++|++++ ++||||
T Consensus 111 ~~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~-p~nptG 177 (386)
T 1u08_A 111 LV-RNGDEVICFDPSYDSYAP---AIALSGGIVKRMALQPPHFRVDWQEFAALLS--------ERTRLVILNT-PHNPSA 177 (386)
T ss_dssp HC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECCTTTCCCCHHHHHHHCC--------TTEEEEEEES-SCTTTC
T ss_pred hC-CCCCEEEEeCCCchhHHH---HHHHcCCEEEEeecCcccCcCCHHHHHHhhc--------ccCEEEEEeC-CCCCCC
Confidence 87 589999999999887554 3677888999887764 57789999999997 6889999965 466999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhh--hcCccEEEEeccccCCCce--eeEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRL--VQAADSASVCLSKGLGAPV--GSVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~--~~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~ 226 (359)
.++|.+++++|+++|++||+++|+|++|..+.+... ..+...+ ..+.++++.|+||++|.++ .|++++++++++.
T Consensus 178 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 257 (386)
T 1u08_A 178 TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAE 257 (386)
T ss_dssp CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHH
Confidence 999999999999999999999999999865433211 1123222 1356788889999998544 2889999999988
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
++........+. +...+.++..+++ .+.++.++++.++++++.+.|++. ++++. .+..++++|+.++.....+
T Consensus 258 l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~~~~~~~ 333 (386)
T 1u08_A 258 IRKVHQYLTFSV--NTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEIL-PCEGTYFLLVDYSAVSTLD 333 (386)
T ss_dssp HHHHHHHHTSSC--CHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEEC-CCCBSSEEEEECTTTCCSC
T ss_pred HHHHHHhhccCC--ChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCceEEEEEecCCCCCCC
Confidence 877665444443 3333444444554 345556777888999999999998 88874 3446788999887410025
Q ss_pred HHHHHHHH-HhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
..++.++| +++||.+.++ +..++|++++ .+++++++++++|++
T Consensus 334 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 334 DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 67888888 5789999764 3568999995 589999999998864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=260.11 Aligned_cols=333 Identities=19% Similarity=0.148 Sum_probs=244.0
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CCC-----CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GKE-----AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~~-----~~~~~~~gt~a~~~~l~ 71 (359)
+.+|||.++.+. .++|.+.+++.+.... ...|...++..++++.+++++ |.+ ..++++||++|+..++.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~ 104 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVL 104 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHH
Confidence 357899988665 3458888888765433 345665566788999999886 532 45677778889999998
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC---CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ---DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
.++ ++|++|++++|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|+++++ +|
T Consensus 105 ~~~-~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~l~~~-~n 171 (411)
T 2o0r_A 105 GLV-EPGSEVLLIEPFYDSYSP---VVAMAGAHRVTVPLVPDGRGFALDADALRRAVT--------PRTRALIINSP-HN 171 (411)
T ss_dssp HHC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECEEETTEEECCHHHHHHHCC--------TTEEEEEEESS-CT
T ss_pred Hhc-CCCCEEEEeCCCcHhHHH---HHHHcCCEEEEeeccccccCCCCCHHHHHHhhc--------cCceEEEEeCC-CC
Confidence 887 589999999999888654 3677888888887653 35689999999998 68899998654 66
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh--cCccEEEEeccccCCCce--eeEEecCHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV--QAADSASVCLSKGLGAPV--GSVIVGSKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~--~~~d~~~~s~~K~~g~~~--gg~~~~~~~~ 223 (359)
|||.+++.+++++|+++|++||+++|+|++|..+.+... ..+...+. .+.|+++.|+||++|.++ .|++++++++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 251 (411)
T 2o0r_A 172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAEL 251 (411)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHH
Confidence 999999999999999999999999999999865443211 12232221 256788889999998554 3888899999
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
.+.+.......+.+.+. ..++++..+++ .+.++.++++.++++++.+.|++. |+++. .+..+.++|+.++...
T Consensus 252 ~~~l~~~~~~~~~~~~~--~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~~~~ 327 (411)
T 2o0r_A 252 IAGVRAAKQYLSYVGGA--PFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFAVH-DSYGTYFLCADPRPLG 327 (411)
T ss_dssp HHHHHHHHHHHTSCCCT--THHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCBSSEEEEECGGGT
T ss_pred HHHHHHHHhhccCCCCh--HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCEec-CCCeeEEEEEecCCCC
Confidence 98887766554444322 22333334443 344556777888899999999988 88874 3445678999887410
Q ss_pred HHHHHHHHHHH-HhcCceeccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+..++.++| .++||.+.++ +..++||++. .+++++++++++|++++++..
T Consensus 328 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 328 YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 12467888888 5789998654 2467999995 589999999999999887654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=258.11 Aligned_cols=330 Identities=14% Similarity=0.101 Sum_probs=244.1
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHh----CC----C-CeEEcCCchHHHHHH
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVM----GK----E-AGLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----~~----~-~~~~~~~gt~a~~~~ 69 (359)
.+|||.++.+. .++|.+.+++.+.... ...|+..++..++++.+++++ |. + ..++++||++|+..+
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 117 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 117 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence 57899998665 4558888888775433 234555556788999988886 53 2 456777778899999
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+..++ ++|++|+++.|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++
T Consensus 118 ~~~~~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~ 185 (429)
T 1yiz_A 118 IQGHV-DEGDEVIIIEPFFDCYEP---MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN--------EKTKM 185 (429)
T ss_dssp HHHHC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC--------TTEEE
T ss_pred HHHhc-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc--------cCceE
Confidence 99887 589999999999887554 2667788888887654 45789999999997 68899
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhh--hcCccEEEEeccccCCCce--e
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRL--VQAADSASVCLSKGLGAPV--G 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~--~~~~d~~~~s~~K~~g~~~--g 214 (359)
|+++++ +||||.++|.+++++|+++|++||+++|+||+|..+.+... ..+...+ ..+.++++.|+||++|+++ .
T Consensus 186 v~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~ 264 (429)
T 1yiz_A 186 IIINTP-HNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI 264 (429)
T ss_dssp EEEESS-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC
T ss_pred EEECCC-CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcce
Confidence 999655 66999999999999999999999999999999865433211 1223222 1356788889999998544 2
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH----------hHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE----------NVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
|++++++++++.+.........+. +...++++..+++. +.++.++++.++++++.+.|+++ ++.+..
T Consensus 265 G~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 341 (429)
T 1yiz_A 265 GWAYGPEALLKNLQMVHQNCVYTC--ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTV 341 (429)
T ss_dssp EEEESCHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred EEEEeCHHHHHHHHHHHhhcccCC--ChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccC
Confidence 889999999888876554433333 33444444445543 34556667888899999999988 888753
Q ss_pred CCccceEEEEEeccch----------HHHHHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHHHHHH
Q 018243 285 DAVETNIVYFEITEDS----------KLYAACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i~~~ 342 (359)
+..++++|+.++... ..+..++.++| .++||.+.++. .+++|++++ .++++++++
T Consensus 342 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~ 418 (429)
T 1yiz_A 342 -PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKA 418 (429)
T ss_dssp -CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHH
T ss_pred -CCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHH
Confidence 446788999987520 02567888888 48999997652 578999996 589999999
Q ss_pred HHHHHHHHHH
Q 018243 343 LSCFQKIYAG 352 (359)
Q Consensus 343 ~~~l~~~~~~ 352 (359)
+++|++++++
T Consensus 419 l~~l~~~l~~ 428 (429)
T 1yiz_A 419 AEILRKWKGS 428 (429)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 9999987653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=256.93 Aligned_cols=329 Identities=16% Similarity=0.120 Sum_probs=245.2
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCC--------CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGK--------EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~~l~~~ 73 (359)
++|||.++.+. .+++.+.+++ +.... ...|+..++..++++.++++++. +..++++||++|+..++..+
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 122 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI 122 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh
Confidence 57899998776 3457888888 65433 23466566678999999999853 34578888899999999988
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++|++|++++|+|.+... .+...|.+++.++.+. ++.+ +++|++.++ +++++|+++++ +||||
T Consensus 123 ~-~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~--------~~~~~v~~~~p-~nptG 188 (409)
T 2gb3_A 123 A-NPGDEILVLEPFYANYNA---FAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN--------ERTKGIVLSNP-CNPTG 188 (409)
T ss_dssp C-CTTCEEEEEESCCTHHHH---HHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC--------TTEEEEEEESS-CTTTC
T ss_pred C-CCCCEEEEcCCCchhHHH---HHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC--------cCCeEEEECCC-CCCCC
Confidence 7 589999999999887654 2667788998887764 3444 788888887 67889988655 66999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce--eeEEecCH-HHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV--GSVIVGSK-EFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~--gg~~~~~~-~~~~~~~ 228 (359)
.+++.+++++|.++|+++|+++|+|++|+.+.......+...-..+.|+++.|+||++|.++ .|++++++ ++.+.++
T Consensus 189 ~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~ 268 (409)
T 2gb3_A 189 VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAM 268 (409)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHH
Confidence 99999999999999999999999999986654321111211101245788889999998654 38888877 8888887
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
....... +. +...++++..++ ....++.++++.++++++.+.|+++ ++++...+..+.++|+.++. .+..
T Consensus 269 ~~~~~~~-~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---~~~~ 341 (409)
T 2gb3_A 269 KLAQGRL-AP--PLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPV---EDAE 341 (409)
T ss_dssp HHHHHSC-CC--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSS---SCHH
T ss_pred HHHhccC-CC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCC---CCHH
Confidence 6665543 32 444455555556 2345556677888899999999998 88762234567788888863 3677
Q ss_pred HHHHHHHhc------CceeccC---------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 306 CLLKKLEEH------GVLVMPE---------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 306 ~~~~~l~~~------gi~~~~~---------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
++.+.|.++ ||.+.++ +..++|++++ ++++++++++++|+++++++..+
T Consensus 342 ~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 405 (409)
T 2gb3_A 342 EFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFCSS 405 (409)
T ss_dssp HHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhhhc
Confidence 899999765 9999664 2578999996 89999999999999999887643
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=253.99 Aligned_cols=325 Identities=14% Similarity=0.090 Sum_probs=241.2
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CC-----C-CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GK-----E-AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-----~-~~~~~~~gt~a~~~~l~ 71 (359)
..+|||.++.+..+ +|.+.+++.+.......|+...+..++++.+++++ |. + ..++++||++++..++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~ 109 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQ 109 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHH
Confidence 45799999876654 48999999886644445665556778888888776 53 2 45777778889988888
Q ss_pred HhhhhcC-----CeEEecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 72 VHCETRG-----SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 72 ~~~~~~g-----~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
.++ ++| ++|+++.|+|.+... .+...|.+++.++.+.+ +.+|+++|++.++ +++++|+++++
T Consensus 110 ~~~-~~g~~~~~d~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~--------~~~~~v~l~~p 177 (396)
T 3jtx_A 110 TVL-NPVSDGIKPAIVSPNPFYQIYEG---ATLLGGGEIHFANCPAPSFNPDWRSISEEVW--------KRTKLVFVCSP 177 (396)
T ss_dssp HHC-CC---CCCCEEEEEESCCHHHHH---HHHHTTCEEEEEECCTTTCCCCGGGSCHHHH--------HTEEEEEEESS
T ss_pred HHh-CCCCccCCCEEEEcCCCcHhHHH---HHHHcCCEEEEeecCCCCCccCHHHHHHhhc--------cCcEEEEEECC
Confidence 887 475 799999999877554 36778989999987543 4679999999998 68999999755
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHh----hh--cCccEEEEeccccCCCcee--eE
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRR----LV--QAADSASVCLSKGLGAPVG--SV 216 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~----~~--~~~d~~~~s~~K~~g~~~g--g~ 216 (359)
+||||.+++.+++++|+++|++||+++|+||+|..+.... ...+... +. .+.++++.|+||.++.++. ||
T Consensus 178 -~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 256 (396)
T 3jtx_A 178 -NNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGF 256 (396)
T ss_dssp -CTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEE
T ss_pred -CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEE
Confidence 6799999999999999999999999999999986543321 1111111 11 2445667799998876532 88
Q ss_pred EecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 217 IVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
+++++++++.+.......+.+. +...+.++..++ ....++.++++.++++.+.+.|++. +.+. .+..+.++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~-~~~~~~~~~~ 331 (396)
T 3jtx_A 257 VAGDAELLKNFLLYRTYHGSAM--SIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDVK-LPDASFYIWL 331 (396)
T ss_dssp EEECHHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCCC-CCSSSSEEEE
T ss_pred EEeCHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCcc-CCCeeEEEEE
Confidence 8999999999887766655554 334444444445 3445557777888899999999876 3332 3457888999
Q ss_pred EeccchHHHHHHHHHHH-HhcCceeccC------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKL-EEHGVLVMPE------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l-~~~gi~~~~~------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++. .+..++.+.| +++||.+.|+ +..++||+++ .+++++++++++|++++
T Consensus 332 ~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 332 KVPD---GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY 395 (396)
T ss_dssp ECTT---SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred ECCC---CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 9875 2667888888 6789999664 3478999996 49999999999998865
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=252.64 Aligned_cols=331 Identities=13% Similarity=0.061 Sum_probs=241.1
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
..+.|.+.....+++.+.+++.+.......+...+...++++.+++++|.+ ..++++||++++..++..++ ++|++|
T Consensus 8 ~~~yl~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~V 86 (392)
T 2z9v_A 8 DPVITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI-SPDDVV 86 (392)
T ss_dssp CCSEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC-CTTCCE
T ss_pred CcceeecCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc-CCCCEE
Confidence 345666666677779999999886644322223456789999999999986 34777888999999999887 599999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
++++++|++... ...+...|.+++.++.+.++.+|+++|++.+++. +++++|++++ ++||||.+++ +++
T Consensus 87 l~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~~-~~nptG~~~~---l~~ 155 (392)
T 2z9v_A 87 LNLASGVYGKGF-GYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH------PEITVVSVCH-HDTPSGTINP---IDA 155 (392)
T ss_dssp EEEESSHHHHHH-HHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC------TTCCEEEEES-EEGGGTEECC---HHH
T ss_pred EEecCCcccHHH-HHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC------CCCcEEEEec-cCCCCceecc---HHH
Confidence 999999876521 1234557889999988777889999999999521 4788888855 5569999988 789
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH--------
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK-------- 232 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~-------- 232 (359)
|.++|++||+++|+|++|+++... .....+ +.|+++.|+||+++++.| |++++++++++.++....
T Consensus 156 i~~l~~~~~~~li~D~a~~~g~~~---~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~ 230 (392)
T 2z9v_A 156 IGALVSAHGAYLIVDAVSSFGGMK---THPEDC--KADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLS 230 (392)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBS---CCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTC
T ss_pred HHHHHHHcCCeEEEEcccccCCcc---cccccc--cceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceecc
Confidence 999999999999999998765332 122222 578999999998876666 899999998887653210
Q ss_pred ---------hhCCC-cchhHHHHHHHHHHHH---Hh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCc---cceEEEEE
Q 018243 233 ---------TLGGG-MRQVGVLCAAALVALQ---EN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV---ETNIVYFE 295 (359)
Q Consensus 233 ---------~~~~~-~~~~~~~~~~~~~~l~---~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---~~~~~~~~ 295 (359)
..... ...+....++...+++ .. .++..+++.++++++.+.|+++ |+++..++. .++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 309 (392)
T 2z9v_A 231 IVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVR 309 (392)
T ss_dssp SGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEE
T ss_pred HHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEE
Confidence 00011 1112222222233332 22 4446777888999999999998 887754221 46678888
Q ss_pred eccchHHHHHHHHHHHHhc-CceeccC----CCcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Q 018243 296 ITEDSKLYAACLLKKLEEH-GVLVMPE----SSTRVRIVVHH-QISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lRi~~~~-~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++. +.+..++.++|.++ ||.+.++ ...++|+++.. .++++++++++++|+++++++.
T Consensus 310 ~~~--~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 310 TPD--GVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CCT--TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCC--CCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 753 24677899999776 9999775 36789999643 7899999999999999998765
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=253.64 Aligned_cols=332 Identities=13% Similarity=0.055 Sum_probs=239.7
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCCC--hHHHHHHHHHHHHhCC----CCeEEcCCchHHHHHHHHHhhh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMHD--PTAFRLETEMAKVMGK----EAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~~--~~~~~l~~~la~~~~~----~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+|||..+.+..+ +|.+.+++.+.... ...|+.. +....+.+.+++.+|. +..++++||++++..++..++
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~- 106 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT- 106 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-
Confidence 5789988876654 48899988875433 2334332 2234444445555552 234677777899999999887
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecC---CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN---QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++|++|+++.|+|.+... .+...|.+++.++.+ .++.+|+++|++.+++ +++++|+++++ +||||.
T Consensus 107 ~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~~v~i~~p-~nptG~ 175 (391)
T 3dzz_A 107 SPGDQILVQEPVYNMFYS---VIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-------PSVRMMVFCNP-HNPIGY 175 (391)
T ss_dssp CTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-------TTEEEEEEESS-BTTTTB
T ss_pred CCCCeEEECCCCcHHHHH---HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-------cCceEEEEECC-CCCCCc
Confidence 599999999999988654 367788899888763 2344899999999985 57899988665 669999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhh-cCcc--EEEEeccccCCCce--eeEEecC-HHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLV-QAAD--SASVCLSKGLGAPV--GSVIVGS-KEFIK 225 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~-~~~d--~~~~s~~K~~g~~~--gg~~~~~-~~~~~ 225 (359)
+++.+++++|+++|++||+++|+|++|+.+.... ...+...+. ...| +++.|+||++|.++ .|+++.+ +++.+
T Consensus 176 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 255 (391)
T 3dzz_A 176 AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRA 255 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHH
Confidence 9999999999999999999999999986544321 112233332 1145 66779999997443 2778775 89988
Q ss_pred HHHHHHHhhCC-CcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccch
Q 018243 226 KARRLRKTLGG-GMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 226 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
.++......+. +. +...++++..++ ..+.++.+++..++++++.+.|++ +|++.+. .+..+.++|+.++. .
T Consensus 256 ~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~ 331 (391)
T 3dzz_A 256 RAEESFFLAGIGEP--NLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVL-DSNASYLAWVDISA-L 331 (391)
T ss_dssp HHHHHHHHHTCSSC--CTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC-CCCBSSEEEEECGG-G
T ss_pred HHHHHHHhhccCCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe-ccCceEEEEEehhh-c
Confidence 88766554332 22 223333444444 333555777788899999999999 8899875 34566778888875 2
Q ss_pred HHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+..++.++| +++||.+.++. ..++|++++ .+++++++++++|+++++++
T Consensus 332 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 332 GMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 34788999999 59999997653 378999996 79999999999999998765
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=250.25 Aligned_cols=323 Identities=16% Similarity=0.115 Sum_probs=239.6
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
+.|.. .+..++|++.+++.+.......+...+...++++.+++++|.+. .++++||++|+. ++..++ ++||+|
T Consensus 4 ~~~~~-gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-~~gd~v 80 (384)
T 3zrp_A 4 LLLHV-GPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-KPNDKI 80 (384)
T ss_dssp --CCS-SCSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-CTTCEE
T ss_pred eeccC-CCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-CCCCEE
Confidence 33444 34455689999998865443333335667899999999999886 578888899999 888776 599999
Q ss_pred EecCCCccee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 82 ILGDNSHIHI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 82 l~~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
++++++|++. +. ..+...|.+++.++.+.++.+|++++++.+++ .++++|++++ ++||||.+.+ ++
T Consensus 81 i~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~-~~nptG~~~~---l~ 147 (384)
T 3zrp_A 81 LVVSNGVFGDRWE--QIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK-------SEYKLVALTH-VETSTGVREP---VK 147 (384)
T ss_dssp EEECSSHHHHHHH--HHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH-------SCEEEEEEES-EETTTTEECC---HH
T ss_pred EEecCCcchHHHH--HHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh-------CCCcEEEEeC-CCCCCceECc---HH
Confidence 9999998653 22 33567899999998888888999999999983 3789999965 5569999988 89
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHH------------
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKA------------ 227 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~------------ 227 (359)
+|.++|++||+++|+|++|+++... ..... .+.|++++|+||+++++.| |+++.++++++.+
T Consensus 148 ~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 222 (384)
T 3zrp_A 148 DVINKIRKYVELIVVDGVSSVGAEE---VKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLD 222 (384)
T ss_dssp HHHHHHGGGEEEEEEECTTTTTTSC---CCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTC
T ss_pred HHHHHHHhcCCEEEEECcccccCcc---ccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCccccc
Confidence 9999999999999999998665432 11222 2678999999999976666 8899999987776
Q ss_pred -HHHHHhh-------C---CCcchhHHHHHHHHHHH---H-HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC---ccc
Q 018243 228 -RRLRKTL-------G---GGMRQVGVLCAAALVAL---Q-ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA---VET 289 (359)
Q Consensus 228 -~~~~~~~-------~---~~~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~~~ 289 (359)
....... . ++. +.....+...++ . ...++..++..++++++.+.|+++ ++++..++ ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 299 (384)
T 3zrp_A 223 LRNWLPVMRGAEEGKAAYFATP--PVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSN 299 (384)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCC--CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCS
T ss_pred HHHHHHHHHhhcccCCCcCCCC--CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCc
Confidence 3222211 0 122 222222222233 2 224557778889999999999999 88875432 135
Q ss_pred eEEEEEeccchHHHHHHHHHHHHhcCceeccCCC---cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 290 NIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS---TRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~---~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.++++.++. .+..++.+.|.++||.+.++.. .++|++++..++++++++++++|+++++++..
T Consensus 300 ~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 300 TVTGVILKV---ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLGE 365 (384)
T ss_dssp SEEEEECSS---SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCC---CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 677788775 3778999999888999977642 68999998889999999999999999988753
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=256.54 Aligned_cols=336 Identities=13% Similarity=0.089 Sum_probs=240.0
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC------------CCCccCCChHHHHHHHHHHHHhC--------CC--CeEEcCC
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV------------DDDVLMHDPTAFRLETEMAKVMG--------KE--AGLFVPS 61 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~l~~~la~~~~--------~~--~~~~~~~ 61 (359)
.+|||+++....+.+.+.+++.+... ....|....+..++++.++++++ .+ ..++++|
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G 116 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG 116 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC
Confidence 46899987766667788888885421 11235554557899999999986 32 3356666
Q ss_pred chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 62 gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+++++..++.+++ ++|++|++++|+|.+... ......|.+++.++.+ .++.+|++++++.+++... ..+++++
T Consensus 117 ~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~~ 191 (428)
T 1iay_A 117 ATGANETIIFCLA-DPGDAFLVPSPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQK--SNIKVKG 191 (428)
T ss_dssp HHHHHHHHHHHHC-CTTCEEEEESSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHH--TTCCEEE
T ss_pred hHHHHHHHHHHhC-CCCCeEEEccCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHh--cCCceEE
Confidence 6788888888887 599999999999887554 2345778899888765 3457899999999873100 0036888
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcC-------cc--EEEEeccccC
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQA-------AD--SASVCLSKGL 209 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~-------~d--~~~~s~~K~~ 209 (359)
|+++++ +||||.+++.+++++|+++|++||+++|+||+|..+.+... ..+...+... .| +++.|+||++
T Consensus 192 v~l~~p-~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~ 270 (428)
T 1iay_A 192 LILTNP-SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM 270 (428)
T ss_dssp EEEESS-CTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS
T ss_pred EEEcCC-CCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc
Confidence 888665 56999999999999999999999999999999865333211 1233344323 56 5667999999
Q ss_pred CCcee--eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH------hHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 210 GAPVG--SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE------NVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 210 g~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
|.++- |+++. ++++++.++.....++ .+...+.++...++. +.++.++++.++++++.+.|+++ ++
T Consensus 271 g~~Glr~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 345 (428)
T 1iay_A 271 GLPGFRVGIIYSFNDDVVNCARKMSSFGL----VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GI 345 (428)
T ss_dssp SCGGGCEEEEEESCHHHHHHHHHHHTTSC----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHHhccc----CCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 85432 77776 7888888775543322 233444444444432 34556677888899999999998 88
Q ss_pred eEecCCccceEEEEEeccc----hHHHHHHHHHHHHh-cCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITED----SKLYAACLLKKLEE-HGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~-~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++. ++..++++|+.++.. ...+..++.+.|.+ +||.+.+++ ..++||+++ ..+++++++++++|+++
T Consensus 346 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 346 KCL-KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRF 423 (428)
T ss_dssp CBC-CCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHH
T ss_pred ccc-CCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHH
Confidence 764 334788899998641 01245688899965 499997753 468999997 58999999999999988
Q ss_pred HHH
Q 018243 350 YAG 352 (359)
Q Consensus 350 ~~~ 352 (359)
+++
T Consensus 424 l~~ 426 (428)
T 1iay_A 424 VGV 426 (428)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=258.11 Aligned_cols=329 Identities=15% Similarity=0.147 Sum_probs=237.9
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCC-----CCccCCChHHHHHHHHHHHHh----C--C--CCeEEcCCchHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVD-----DDVLMHDPTAFRLETEMAKVM----G--K--EAGLFVPSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~----~--~--~~~~~~~~gt~a~~~ 68 (359)
..+|||.++++.. |+|.+.+++.+.... ...|+...+..++++.+++++ | . +..++++||++++..
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~ 114 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHH
Confidence 3579999987764 458888888765433 234655666788888888876 3 2 234677778899999
Q ss_pred HHHHhhhhcC-CeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 69 SVLVHCETRG-SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 69 ~l~~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++..++ ++| |+|+++.|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ +++++|++++ +
T Consensus 115 ~~~~l~-~~g~d~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-p 181 (398)
T 3ele_A 115 CFRALT-SDAYDEFITIAPYFPEYKV---FVNAAGARLVEVPADTEHFQIDFDALEERIN--------AHTRGVIINS-P 181 (398)
T ss_dssp HHHHHC-CSTTCEEEEESSCCTHHHH---HHHHTTCEEEEECCCTTTSSCCHHHHHHTCC--------TTEEEEEECS-S
T ss_pred HHHHHc-CCCCCEEEEeCCCchhhHH---HHHHcCCEEEEEecCCcCCcCCHHHHHHHhC--------cCCCEEEEcC-C
Confidence 999887 599 999999999877554 3677898999998764 56889999999998 6899999965 5
Q ss_pred cCCCceecChhhHHHHHHHHHH------cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e-eEEe
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKK------HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G-SVIV 218 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~------~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g-g~~~ 218 (359)
+||||.+++.+++++|+++|++ ||+++|+||+|..+.......+...-..+.++++.|+||++|.++ + ||++
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 261 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVL 261 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEE
Confidence 6799999999999999999999 999999999976543321111111111133466669999998543 3 8888
Q ss_pred cCHHH------HHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 219 GSKEF------IKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 219 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
+++++ .+.+.......+ ....+...+.++...++.. . .++++.++++++.+.|+++ ++++.. +..+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~-~-~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~ 336 (398)
T 3ele_A 262 VPDEVYDKAELYAAVCGAGRALG-YVCAPSLFQKMIVKCQGAT-G-DINAYKENRDLLYEGLTRI-GYHCFK-PDGAFYM 336 (398)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHTT-CCCSCHHHHHHHTTCTTCC-C-CHHHHHHHHHHHHHHHHHH-TCCEEC-CSBSSEE
T ss_pred EcchhhhHHHHHHHHHHHhhhcc-ccCCCHHHHHHHHHHhcCH-H-HHHHHHHHHHHHHHHHHHc-CCeecC-CCeeEEE
Confidence 87663 333333333322 2222334444443333321 1 4566778889999999988 887753 4466779
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
|+.++.. +..++.+.|.++||.+.++. .+++|++++ .+++++++++++|++++++++
T Consensus 337 ~~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 337 FVKALED---DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp EEECSSS---CHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCC---CHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 9988752 67789999999999997764 578999994 799999999999999998764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=257.00 Aligned_cols=333 Identities=12% Similarity=-0.003 Sum_probs=245.3
Q ss_pred cccccccCCCC-CCh-HHHH--HHHHHcCCCC--CCccCCChHHHHHHHHHHHHh-----CCC--C---eEEcCCchHHH
Q 018243 3 TRTVDLRSDTV-TKP-TEAM--RAAMASAEVD--DDVLMHDPTAFRLETEMAKVM-----GKE--A---GLFVPSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~-~~~-~~~~--~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~-----~~~--~---~~~~~~gt~a~ 66 (359)
+.+|||..+.+ ..+ +|.+ .+++.+.... ...|+...+..++++.+++++ +.+ . .++++||++|+
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al 126 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGL 126 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHH
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHH
Confidence 35789999877 433 3555 7777665432 334655566899999999999 653 4 56777778899
Q ss_pred HHHHHHhhhhcCCeEEecCCCcceeecccccccc-CCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEec
Q 018243 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTI-GGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~ 144 (359)
..++..++ ++||+|+++.|+|.+... .+.. .|.+++.++.+. ++.+|+++|++.+++.. .+++++++++
T Consensus 127 ~~~~~~l~-~~gd~Vl~~~p~y~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~v~i~~ 197 (430)
T 2x5f_A 127 SLVGDLFV-NQDDTILLPEHNWGNYKL---VFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN-----KDKVIMILNY 197 (430)
T ss_dssp HHHHHHHC-CTTCEEEEESSCCTHHHH---HHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC-----SSEEEEEECS
T ss_pred HHHHHHHh-CCCCEEEEcCCcCccHHH---HHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC-----CCCEEEEEcC
Confidence 99999887 599999999999887654 3666 788988887654 46789999999998310 2788888866
Q ss_pred cccCCCceecChhhHHHHHHHHHH-----cCcEEEEecccccchhhhc-CchhH-hhhc--Cc---cEEEEeccccCCCc
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKK-----HGLKLHIDGARIFNAAVAL-GVPVR-RLVQ--AA---DSASVCLSKGLGAP 212 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~-----~~~~li~D~a~~~~~~~~~-~~~~~-~~~~--~~---d~~~~s~~K~~g~~ 212 (359)
+ +||||.+++.+++++|.++|++ ||+++|+|++|..+..... ..+.. .+.. +. ++++.|+||++|.+
T Consensus 198 p-~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 276 (430)
T 2x5f_A 198 P-NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW 276 (430)
T ss_dssp S-CTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG
T ss_pred C-CCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCC
Confidence 6 7799999999999999999999 9999999999765433211 12333 3321 23 35566999999855
Q ss_pred ee--eEEec---CHHHHHHHHHHHHh----hCCCcchhHHHHHHHHHHHH-H--hHHH---HhhhHHHHHHHHHHHHh--
Q 018243 213 VG--SVIVG---SKEFIKKARRLRKT----LGGGMRQVGVLCAAALVALQ-E--NVLV---MLDGDHKKAKLLAEGLN-- 275 (359)
Q Consensus 213 ~g--g~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~-~--~~~~---~~~~~~~~~~~l~~~l~-- 275 (359)
+- |++++ ++++.+.+...... ...+. +...++++..+++ . +.++ .++++.++++++.+.|+
T Consensus 277 G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 354 (430)
T 2x5f_A 277 GFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSG--PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYAD 354 (430)
T ss_dssp GGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSC--CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCC--ChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 88888 99998888765543 22233 4444455555554 2 2332 66677788899999998
Q ss_pred --cCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh-cCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 276 --QLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE-HGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 276 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+. ++++. ++..+.++|+.++. .+..++.+.|.+ +||.+.+++.+++|++++. .+++++++++++|++++++
T Consensus 355 ~~~~-g~~~~-~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 355 QYHS-HWQAY-DFNSGYFMAIKVHD---VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp GGTT-TEEEC-CCCBSSEEEEEESS---SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred CCCC-Cceee-CCCceEEEEeCCCC---CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 55 77764 34456779998873 367789999976 9999999877899999973 6999999999999999876
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 429 ~ 429 (430)
T 2x5f_A 429 L 429 (430)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=250.72 Aligned_cols=337 Identities=11% Similarity=0.072 Sum_probs=242.6
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC-------------CccCCChHHHHHHHHHHHHhC----------CCCeEEcCC
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD-------------DVLMHDPTAFRLETEMAKVMG----------KEAGLFVPS 61 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~-------------~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~~ 61 (359)
+|+|..+....+++.+.+++.+..... ..|+..++..++++.++++++ .+..++++|
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~g 119 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG 119 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH
T ss_pred eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCC
Confidence 567777777788899999998754321 236666677999999999998 334578888
Q ss_pred chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 62 gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
|++|+..++..++ ++|+.|+++.|+|.+... .+....|.+++.++.+. ++.+|+++|++.+++.... ..++++
T Consensus 120 g~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~--~~~~~~ 194 (435)
T 3piu_A 120 ATSANETFIFCLA-DPGEAVLIPTPYYPGFDR--DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR--NLRVKG 194 (435)
T ss_dssp HHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH--HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT--TCCEEE
T ss_pred hHHHHHHHHHHhc-CCCCeEEECCCccccHHH--HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhc--CCCeEE
Confidence 8899999999988 599999999999888665 22336788999987764 3568999999999731100 037889
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcC---------cc--EEEEeccc
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQA---------AD--SASVCLSK 207 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~---------~d--~~~~s~~K 207 (359)
|+++++ +||||.+++.+++++|+++|++||+++|+||+|..+.+... ..+...+... .| +++.|+||
T Consensus 195 v~i~~p-~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK 273 (435)
T 3piu_A 195 VLVTNP-SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 273 (435)
T ss_dssp EEEESS-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSS
T ss_pred EEEcCC-CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeec
Confidence 988776 56999999999999999999999999999999865433311 1222222221 23 55669999
Q ss_pred cCCCce-e-eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhcCC
Q 018243 208 GLGAPV-G-SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQLK 278 (359)
Q Consensus 208 ~~g~~~-g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~~~ 278 (359)
.||.++ . |++++ ++.+.+.++........+ +...+++...+ +...++.++++.++++++.+.|++.
T Consensus 274 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 348 (435)
T 3piu_A 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVS----SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS- 348 (435)
T ss_dssp SSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCC----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCC----HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 998543 2 77777 677777776554443222 22222222222 2234446677888899999999998
Q ss_pred CceEecCCccceEEEEEeccch----HHHHHHHHHHHHh-cCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 279 GLRVDVDAVETNIVYFEITEDS----KLYAACLLKKLEE-HGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~-~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
|+++. .+..++++|+.++... ..+..++.++|.+ +||.+.++ ++.++||+++. .+++++++++++|+
T Consensus 349 g~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~e~i~~~l~~l~ 426 (435)
T 3piu_A 349 GISCL-NGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFAN-LPERTLDLAMQRLK 426 (435)
T ss_dssp TCEEC-CCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSS-SCHHHHHHHHHHHH
T ss_pred CCccc-CCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeC-CCHHHHHHHHHHHH
Confidence 88875 3446689999987520 1145678888855 49999764 45789999963 39999999999999
Q ss_pred HHHHHHH
Q 018243 348 KIYAGVC 354 (359)
Q Consensus 348 ~~~~~~~ 354 (359)
++++++.
T Consensus 427 ~~l~~~~ 433 (435)
T 3piu_A 427 AFVGEYY 433 (435)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=250.63 Aligned_cols=335 Identities=19% Similarity=0.250 Sum_probs=239.4
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
+.+|+|+++....++|.+.+++.+.... ...++..+...++++.+++++|.+. .++++||++|+..++..++ ++|+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~gd 91 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL-RPWE 91 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-CTTE
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh-CCCC
Confidence 5679999988887789999999886543 2234456778899999999999764 4778899999999999987 5899
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|++++++|.+.... ..+...|.+++.++.+ ++.+|+++|++.+++... .+..++++|+++++ + |||.++|.+++
T Consensus 92 ~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~-~~~~~~~~v~~~~~-~-ptG~~~~~~~l 166 (359)
T 1svv_A 92 AVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRS-EHMVIPKLVYISNT-T-EVGTQYTKQEL 166 (359)
T ss_dssp EEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCS-TTSCEEEEEEEESS-C-TTSCCCCHHHH
T ss_pred EEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHh-ccCCCceEEEEEcC-C-CCceecCHHHH
Confidence 999999999887652 1356778899999875 788999999999984100 00124899999776 4 89999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHh--hhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR--LVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGG 236 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~--~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~ 236 (359)
++|.++|++||+++|+|++|........+..... +....|++++|++|+ |++.| |+++.++++.+.++......+.
T Consensus 167 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~~~~~~~ 245 (359)
T 1svv_A 167 EDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDALKPNARHLIKQRGA 245 (359)
T ss_dssp HHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHHHHTTC
T ss_pred HHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcccHHHHHHHHHhcCCc
Confidence 9999999999999999999732211211211111 113678999999997 55667 8888888887776654322332
Q ss_pred CcchhHHHHHHHHHHHH-HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc-
Q 018243 237 GMRQVGVLCAAALVALQ-ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH- 314 (359)
Q Consensus 237 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 314 (359)
.........+.....++ ...++.++++.++++++.+.| +.+++++.. +..++++|+.++. ++.++|.++
T Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~l~~~~ 316 (359)
T 1svv_A 246 LMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAW-PSASNQLFPILEN-------TMIAELNNDF 316 (359)
T ss_dssp CCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSS-CCSSSEECBEEEH-------HHHHHHTTTE
T ss_pred ccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEcc-CCccceEEEEcCH-------HHHHHHHHhc
Confidence 21111111111122232 223446777888999999999 556888743 4467788877652 788889777
Q ss_pred Cceecc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMP---ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 315 gi~~~~---~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
||.+.+ .+..++|++++...+++++++++++|+++++++
T Consensus 317 gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 317 DMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred CEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 999844 245789999988899999999999999887654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=251.93 Aligned_cols=318 Identities=14% Similarity=0.073 Sum_probs=237.3
Q ss_pred cccccccCCCC-CChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTV-TKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
..+|||.++.+ ..++|.+.+++.+.......| ..+...++++.++++++.+. .++++||++++..++..+ +
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~-----d 99 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNLGVY-PDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF-----E 99 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGGGSC-CCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC-----S
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc-----C
Confidence 35799998844 445688888887754333344 34667999999999999643 466777888888887776 8
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|+++.|+|.+... .++..|.+++.++.+.++.++++++++.++ + +++|+++++ +||||.+++.+++
T Consensus 100 ~vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~--------~-~~~v~i~~p-~nptG~~~~~~~l 166 (361)
T 3ftb_A 100 KILIIVPSYAEYEI---NAKKHGVSVVFSYLDENMCIDYEDIISKID--------D-VDSVIIGNP-NNPNGGLINKEKF 166 (361)
T ss_dssp EEEEEESCCTHHHH---HHHHTTCEEEEEECCTTSCCCHHHHHHHTT--------T-CSEEEEETT-BTTTTBCCCHHHH
T ss_pred cEEEecCChHHHHH---HHHHcCCeEEEeecCcccCCCHHHHHHhcc--------C-CCEEEEeCC-CCCCCCCCCHHHH
Confidence 99999999887654 367779999999888777889999999998 6 889988666 6699999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc-Ccc-EEEEeccccCCCce-e-eEEe-cCHHHHHHHHHHHHhh
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ-AAD-SASVCLSKGLGAPV-G-SVIV-GSKEFIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~d-~~~~s~~K~~g~~~-g-g~~~-~~~~~~~~~~~~~~~~ 234 (359)
++|+++|++||+++|+|++|..+... ...+...... ..+ +++.|+||.+|.++ + |+++ .++++.+.++.....+
T Consensus 167 ~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~ 245 (361)
T 3ftb_A 167 IHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPW 245 (361)
T ss_dssp HHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTT
T ss_pred HHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCC
Confidence 99999999999999999998654442 1122222211 222 45569999998543 2 7777 8999988876544322
Q ss_pred CCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCCccceEEEEEeccchHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDAVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
..+...++++..+++ ++.++.+++..++++++.+.|+++|++. +. +..++++++.++. .+..++.+.|
T Consensus 246 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~l~~~l 316 (361)
T 3ftb_A 246 ----NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF--SPHANFVLCRLEN---ISGEKLYDSL 316 (361)
T ss_dssp ----CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE--CCSSSEEEEEESS---SCHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec--CCCCeEEEEEcCC---CCHHHHHHHH
Confidence 234455555555553 4455577778889999999999998888 54 3467888888875 3678899999
Q ss_pred HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 312 EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 312 ~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++||.+.++. ..++|++++ ++++++++++.|+++.+.
T Consensus 317 ~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 317 LKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp HTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred HHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 88899997753 578999984 788899999999887653
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=251.39 Aligned_cols=313 Identities=17% Similarity=0.122 Sum_probs=234.9
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhC-C--CCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecc
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMG-K--EAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN 94 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~--~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~ 94 (359)
+++.+++.. ....|+..++..++++.++++++ . +..++++||++|+..++.+++ ++||+|+++.|+|.+...
T Consensus 46 ~~~~~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~- 120 (375)
T 3op7_A 46 EDFYKKLQG---TKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYD- 120 (375)
T ss_dssp HHHHHHHHT---SCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHH-
T ss_pred HHHHHHHhc---CCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHH-
Confidence 345555544 34457777788999999999974 2 345788888999999999887 599999999999988664
Q ss_pred ccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcE
Q 018243 95 GGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLK 172 (359)
Q Consensus 95 ~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~ 172 (359)
.+...|.+++.++.+ .++.+|+++|++.++ +++++|+++++ +||||.++|.+++++|.++|++||++
T Consensus 121 --~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~~-~nptG~~~~~~~l~~i~~la~~~~~~ 189 (375)
T 3op7_A 121 --IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR--------PTTKMICINNA-NNPTGAVMDRTYLEELVEIASEVGAY 189 (375)
T ss_dssp --HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC--------TTCCEEEEESS-CTTTCCCCCHHHHHHHHHHHHTTTCE
T ss_pred --HHHHcCCEEEEEeccccCCCCCCHHHHHHhhc--------cCCeEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 367788898888765 345589999999998 78999999655 56999999999999999999999999
Q ss_pred EEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHH
Q 018243 173 LHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALV 250 (359)
Q Consensus 173 li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (359)
+|+|++|..+... ........ .+.++++.|+||.+|.++. |++++++++.+.++......+.+. +...++++..
T Consensus 190 li~De~~~~~~~~-~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 265 (375)
T 3op7_A 190 ILSDEVYRSFSEL-DVPSIIEV-YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICA--GVFDDLVAQL 265 (375)
T ss_dssp EEEECCSCCCSSS-CCCCHHHH-CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCC--CHHHHHHHHH
T ss_pred EEEEccccccccc-CCCchhhh-cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCC--CcHHHHHHHH
Confidence 9999997654332 11122222 2344667799999985432 888889999998876665544444 3344444444
Q ss_pred HHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCC----
Q 018243 251 ALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPES---- 322 (359)
Q Consensus 251 ~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~---- 322 (359)
+++ ...++.+++..++++++.+.|++.|++.+.. +..+.+.|+.++.+ .+..++.+.| .++||.+.++.
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~~g~~~~~ 342 (375)
T 3op7_A 266 ALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIR-PAVVSTSFVKIAVD--MPMEDFCLQLLQEHGVLLVPGNRFER 342 (375)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECC-CSSSSCEEEEECCS--SCHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCCeEEEeEEcCCC--CCHHHHHHHHHHhCCEEEeChhhhCC
Confidence 453 3444455666788999999999988888743 44667778777642 3667888887 78999997764
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 323 STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 323 ~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
..++|++++ .+.+++++++++|.++++++.+
T Consensus 343 ~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 343 DGYVRLGFA--CEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TTEEEECCC--SCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCeEEEEec--CCHHHHHHHHHHHHHHHHHHhh
Confidence 578999985 5669999999999999988754
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=254.03 Aligned_cols=326 Identities=16% Similarity=0.156 Sum_probs=239.1
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC----Cc------cCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD----DV------LMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~----~~------~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
+++|..+....+++.+.+++.+..... .. |...+...++++.++++++. +..++++||++|+..++.
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 103 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN 103 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHH
Confidence 577777766655678888776643211 11 12356678999999999998 234777888899999999
Q ss_pred Hhh---hhcCCeEEecCCCcceeecc-ccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 72 VHC---ETRGSEVILGDNSHIHIYEN-GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 72 ~~~---~~~g~~vl~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.+. .++|++|++++++|.+.+.. ...+...|.+++.++.+.++.+|+++|++.++ +++++|++++ ++
T Consensus 104 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~-~~ 174 (406)
T 1kmj_A 104 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD--------EKTRLLAITH-VS 174 (406)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC--------TTEEEEEEES-BC
T ss_pred HhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhc--------cCCeEEEEeC-CC
Confidence 982 25899999999999876531 01245678899999887788899999999998 6889998855 55
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~ 226 (359)
||||.++| +++|.++|++||+++|+|++|+.+.. ......+ +.|+++.|+||.+| +.| |++++++++.+.
T Consensus 175 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~~--~~d~~~~s~~K~~g-~~G~G~~~~~~~~~~~ 245 (406)
T 1kmj_A 175 NVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL--DCDFYVFSGHKLYG-PTGIGILYVKEALLQE 245 (406)
T ss_dssp TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH--TCSEEEEEGGGTTS-CTTCEEEEECHHHHHH
T ss_pred ccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCccccc--CCCEEEEEchhccC-CCCcEEEEEeHHHHhh
Confidence 59999998 89999999999999999999876543 1222233 68899999999996 455 889899988877
Q ss_pred HHHHHHh---------------------hCCCcchhHHHHHHHH-HHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 227 ARRLRKT---------------------LGGGMRQVGVLCAAAL-VALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 227 ~~~~~~~---------------------~~~~~~~~~~~~~~~~-~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
++..... +..++ +...+.++. .+++ ...+...++..++++++.+.|+++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 323 (406)
T 1kmj_A 246 MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGT--PNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL 323 (406)
T ss_dssp CCCSSCSTTSEEEEETTTEEEECCTTGGGCCSS--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred cCCcccCCCceeecccccccccCCCchhccCCC--CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 6432210 00111 223333322 3332 234446677888999999999998888
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++..+...++++++.++. .+..++.+.|.++||.+.++. ..++|++++..++++++++++++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~ 400 (406)
T 1kmj_A 324 TLYGPQNRLGVIAFNLGK---HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQR 400 (406)
T ss_dssp EEESCTTCCSEEEEEETT---CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEecCCCcCCEEEEEECC---CCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 875432146677777753 356788899999999987653 47899999888899999999999999
Q ss_pred HHHHH
Q 018243 349 IYAGV 353 (359)
Q Consensus 349 ~~~~~ 353 (359)
+++.+
T Consensus 401 ~~~~l 405 (406)
T 1kmj_A 401 IHRLL 405 (406)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=256.84 Aligned_cols=330 Identities=14% Similarity=0.123 Sum_probs=243.9
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCCC---CccCCChHHHHHHHHHHHHhC------C---CCeEEcCCchHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVDD---DVLMHDPTAFRLETEMAKVMG------K---EAGLFVPSGTMGNLIS 69 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~------~---~~~~~~~~gt~a~~~~ 69 (359)
+..|||..+.+.. |+|.+.+++.+..... ..|+...+..++++.++++++ . +..++++||++++..+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~ 107 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 107 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHH
Confidence 3578999987664 4588888887754332 346555667888888888876 2 2357777888899999
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC------------CCCCCHHHHHHHhcCCCCCccCCce
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ------------DGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~------------~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
+..++ ++|++|+++.|+|.+... .+...|.+++.++.+. ++.+|++++++.++ +++
T Consensus 108 ~~~~~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~--------~~~ 175 (422)
T 3fvs_A 108 FQALV-DEGDEVIIIEPFFDCYEP---MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT--------SRT 175 (422)
T ss_dssp HHHHC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC--------TTE
T ss_pred HHHHc-CCCCEEEEcCCCchhhHH---HHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC--------CCc
Confidence 98887 599999999999877553 3677888888887654 34689999999988 689
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc--CccEEEEeccccCCCce-
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ--AADSASVCLSKGLGAPV- 213 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~--~~d~~~~s~~K~~g~~~- 213 (359)
++|+++++ +||||.+++.+++++|+++|++||+++|+|++|..+.+... ..+...+.. +.++++.|+||.+|.++
T Consensus 176 ~~v~~~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 254 (422)
T 3fvs_A 176 KALVLNTP-NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 254 (422)
T ss_dssp EEEEEESS-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCC-CCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccc
Confidence 99999654 66999999999999999999999999999999865433211 112333321 23366669999998543
Q ss_pred e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----------HhHHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 214 G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ----------ENVLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 214 g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
+ |++++++++++.+.........+. +...+.++..+++ .+.++.++++.++++++.+.|+++ |+.+
T Consensus 255 r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 331 (422)
T 3fvs_A 255 KVGWVLGPDHIMKHLRTVHQNSVFHC--PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKP 331 (422)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred eEEEEEeCHHHHHHHHHHHhhccCCC--CcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 3 889999999988876655444433 3344444444443 344557777888999999999998 8887
Q ss_pred ecCCccceEEEEEeccchHHH------------HHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHH
Q 018243 283 DVDAVETNIVYFEITEDSKLY------------AACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISAND 338 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~ 338 (359)
.. +..++++|+.++.. ... ..++.+.| .++||.+.+++ .+++|++++ .++++
T Consensus 332 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~ 407 (422)
T 3fvs_A 332 II-PQGSYFLITDISDF-KRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEAT 407 (422)
T ss_dssp EB-CSBSSEEEEECHHH-HHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHH
T ss_pred cC-CCeeeEEEEechhh-cccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHH
Confidence 54 46888999988651 110 45777776 67899987643 568999985 59999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 339 VHYTLSCFQKIYAG 352 (359)
Q Consensus 339 i~~~~~~l~~~~~~ 352 (359)
+++++++|++++++
T Consensus 408 i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 408 LQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=250.93 Aligned_cols=315 Identities=14% Similarity=0.130 Sum_probs=235.8
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCC--------CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGK--------EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++.+.. +++.+.+++.+.... ...|+..++..++++.++++++. +..++++||++++..++..+
T Consensus 30 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (370)
T 2z61_A 30 KVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI 109 (370)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh
Confidence 578999987754 457888888764422 33466556788999999999852 23578888899999999988
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
+ ++|++|++++|+|.+... .+...|.+++.++ +|+++|++.++ +++++|+++++ +||||.+
T Consensus 110 ~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~------~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~ 170 (370)
T 2z61_A 110 I-DDGDEVLIQNPCYPCYKN---FIRFLGAKPVFCD------FTVESLEEALS--------DKTKAIIINSP-SNPLGEV 170 (370)
T ss_dssp C-CTTCEEEEESSCCTHHHH---HHHHTTCEEEEEC------SSHHHHHHHCC--------SSEEEEEEESS-CTTTCCC
T ss_pred c-CCCCEEEEeCCCchhHHH---HHHHcCCEEEEeC------CCHHHHHHhcc--------cCceEEEEcCC-CCCcCcc
Confidence 7 599999999999887654 2667888888886 59999999998 67889888554 6699999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh--hcCccEEEEeccccCCCce--eeEEecCHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL--VQAADSASVCLSKGLGAPV--GSVIVGSKEFIKKARR 229 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~--~~~~d~~~~s~~K~~g~~~--gg~~~~~~~~~~~~~~ 229 (359)
++.+ |.++|++||+++|+|++|..+.......+...+ ..+.|+++.|+||++|.++ .|++++++++.+.++.
T Consensus 171 ~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 246 (370)
T 2z61_A 171 IDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILK 246 (370)
T ss_dssp CCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH
T ss_pred cCHH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHH
Confidence 9954 999999999999999998654432112233333 1245677889999998554 3899999999998877
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
.......+. +...+.++..+++ .+.++.++++.++++++.+.|+++ |+++.. +..+.++|+.++. +..
T Consensus 247 ~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~----~~~ 318 (370)
T 2z61_A 247 LQQNLFISA--PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNN-PIGAYYVFPNIGE----DGR 318 (370)
T ss_dssp HHHHHTSSS--CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCC-CCBTTEECCBCSS----CHH
T ss_pred HHhhcccCC--CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-CCcceEEEEecCC----CHH
Confidence 666554444 3333444433442 334446677888899999999998 887643 4456778888764 466
Q ss_pred HHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 306 ~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.++|. ++||.+.++ +..++|++++ .+++++++++++|+++++
T Consensus 319 ~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 319 EFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 8889995 899999775 2568999996 799999999999998875
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=256.44 Aligned_cols=333 Identities=15% Similarity=0.084 Sum_probs=238.0
Q ss_pred ccccccCCCC-----CChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC------------C--CCeEEcCCc
Q 018243 4 RTVDLRSDTV-----TKPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG------------K--EAGLFVPSG 62 (359)
Q Consensus 4 ~~id~~~~~~-----~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~------------~--~~~~~~~~g 62 (359)
.+|||.++.+ ..|++.+.+++.+.... ...|+..++..++++.++++++ . +..++++||
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 113 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG 113 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHH
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCCh
Confidence 4789998764 45568888888765432 2346555678999999999998 2 234677777
Q ss_pred hHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 63 TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 63 t~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++++..++..++ ++|++|+++.|+|.+... .+...|.+++.++.+. ++.+|+++|++.++ ++++++
T Consensus 114 ~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--------~~~~~v 181 (416)
T 1bw0_A 114 SHGILMAITAIC-DAGDYALVPQPGFPHYET---VCKAYGIGMHFYNCRPENDWEADLDEIRRLKD--------DKTKLL 181 (416)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC--------TTEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEcCCCcHhHHH---HHHHcCcEEEEeecCcccCCCCCHHHHHHHhc--------cCCeEE
Confidence 888888888887 599999999999877553 3677888988887643 36689999999998 678888
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-----CchhHhhhcCcc-EEEEeccccCCCce-
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-----GVPVRRLVQAAD-SASVCLSKGLGAPV- 213 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~~~~~~~~d-~~~~s~~K~~g~~~- 213 (359)
+++++ +||||.++|.+++++|+++|++||+++|+|++|....+... ..+...+....+ +++.|+||++++++
T Consensus 182 ~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl 260 (416)
T 1bw0_A 182 IVTNP-SNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGW 260 (416)
T ss_dssp EEESS-CTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGG
T ss_pred EEeCC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCc
Confidence 88775 66999999999999999999999999999999865332211 012222221223 44559999987653
Q ss_pred -eeEEecCH--HHHHHH----HHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 214 -GSVIVGSK--EFIKKA----RRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 214 -gg~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
.|++++++ ++.+.+ +..... ..+. +...++++..+++ .+.++.+++..++++++.+.|+++|++.+
T Consensus 261 r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 337 (416)
T 1bw0_A 261 RLGWLLYVDPHGNGPSFLEGLKRVGML-VCGP--CTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP 337 (416)
T ss_dssp CCEEEEEECTTCSCHHHHHHHHHHHHH-HTCS--CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred eEEEEEeeCchhhHHHHHHHHHHHhcc-ccCC--CcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 27777644 233332 222111 1222 3444555555553 34455677788899999999999888886
Q ss_pred ecCCccceEEEEEeccc---hHHHHHHHHHHH-HhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITED---SKLYAACLLKKL-EEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. .+..++++|+.++.. ...+..++.+.| .++||.+.++. .+++|+++ ..+++++++++++|.+++++..
T Consensus 338 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 338 T-MPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp C-CCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHB
T ss_pred c-CCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHHhh
Confidence 4 345688899888631 012567888888 68999997753 56899999 4789999999999999998765
Q ss_pred h
Q 018243 355 E 355 (359)
Q Consensus 355 ~ 355 (359)
+
T Consensus 415 ~ 415 (416)
T 1bw0_A 415 A 415 (416)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=248.67 Aligned_cols=334 Identities=11% Similarity=0.018 Sum_probs=240.9
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh----C--C--CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM----G--K--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~--~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||.++... .++|.+.+++.+... ....|... ..++++.+++++ | . +..++++||++|+..++.++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l 109 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF 109 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh
Confidence 67899888764 445888888876542 22334433 788888888875 5 2 23467777888999999988
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CC--CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QD--GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~--~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
+ ++|++|+++.|+|.+... .+...|.+++.++.+ .+ +.+|+++|++.+++ +++++|++++ ++|||
T Consensus 110 ~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-------~~~~~v~~~~-~~npt 177 (399)
T 1c7n_A 110 T-KPGDGVIIITPVYYPFFM---AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-------KNNKALLFCS-PHNPV 177 (399)
T ss_dssp C-CTTCEEEECSSCCTHHHH---HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-------TTEEEEEEES-SBTTT
T ss_pred c-CCCCEEEEcCCCcHhHHH---HHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc-------CCCcEEEEcC-CCCCC
Confidence 7 589999999999888654 266778888888764 22 35899999999985 5788998855 57799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh---cCccEEEEeccccCCCce--eeEEecC-HHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV---QAADSASVCLSKGLGAPV--GSVIVGS-KEF 223 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~---~~~d~~~~s~~K~~g~~~--gg~~~~~-~~~ 223 (359)
|.++|.+++++|+++|++||+++|+|++|..+..... ..+...+. .+.++++.|+||++|.++ .|+++++ +++
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 257 (399)
T 1c7n_A 178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDI 257 (399)
T ss_dssp TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHH
Confidence 9999999999999999999999999999865443211 12232221 133466679999998543 2778875 678
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccc
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
.+.++.....++... .+...++++..++ ..+.++.++++.++++++.+.|++ +|++.+. ++..+.++|+.++.
T Consensus 258 ~~~l~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~- 334 (399)
T 1c7n_A 258 RERFTKSRDATSGMP-FTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFRA- 334 (399)
T ss_dssp HHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCSBSSEEEEECGG-
T ss_pred HHHHHHHHhhcccCC-CCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe-cCCceEEEEEEccc-
Confidence 888877665553311 2334444444444 344555667788899999999998 7888764 34456667888864
Q ss_pred hHHHHHHHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 300 SKLYAACLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 300 ~~~~~~~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
.+.+..++.+.|. ++||.+.++ +..++|++++ ..++++++++++|.++++++.++
T Consensus 335 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 335 LKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA--APSSVIQESLERLNKALKDLKNR 396 (399)
T ss_dssp GCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEec--cCHHHHHHHHHHHHHHHHHHHhc
Confidence 1235778999995 799999775 3468999996 45899999999999999887653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=255.49 Aligned_cols=318 Identities=16% Similarity=0.162 Sum_probs=223.5
Q ss_pred CCccCCChHHHHHHHHHHHHhC------C--CCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCC
Q 018243 31 DDVLMHDPTAFRLETEMAKVMG------K--EAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGG 102 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~------~--~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g 102 (359)
...|+..++..++++.++++++ . +..++++||++++..++..++..+||.|+++.|+|.+... .+...|
T Consensus 127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~---~~~~~g 203 (500)
T 3tcm_A 127 TGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSA---SIALHG 203 (500)
T ss_dssp SSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHH---HHHHTT
T ss_pred CCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHH---HHHHcC
Confidence 3457777888999999998874 2 2347777788888888888873489999999999877553 377788
Q ss_pred ccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccc
Q 018243 103 VHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180 (359)
Q Consensus 103 ~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 180 (359)
.+++.++.++ ++.+|+++|++.+++... ...++++|+++++ +||||.+++.+++++|+++|++||+++|+|++|.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~k~ivl~~p-~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~ 280 (500)
T 3tcm_A 204 GALVPYYLNESTGWGLETSDVKKQLEDARS--RGINVRALVVINP-GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQ 280 (500)
T ss_dssp CEEEEEECBTTTTSBCCHHHHHHHHHHHHH--TTCEEEEEEEESS-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHHh--cCCCceEEEEECC-CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 8999887654 368899999999983100 0027889988765 6799999999999999999999999999999976
Q ss_pred cchhhh--cCchhHhh-------hcCccEEEE-eccccC-CCce--eeEEec---CHHHHHHHHHHHHhhCCCcchhHHH
Q 018243 181 FNAAVA--LGVPVRRL-------VQAADSASV-CLSKGL-GAPV--GSVIVG---SKEFIKKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 181 ~~~~~~--~~~~~~~~-------~~~~d~~~~-s~~K~~-g~~~--gg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (359)
.+.+.. ...++..+ .....++++ |+||.| |.++ +||++. ++++++.+...... ..+.+.....
T Consensus 281 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~ 359 (500)
T 3tcm_A 281 ENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQI 359 (500)
T ss_dssp TCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHH
T ss_pred ccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHH
Confidence 544321 12232222 112234554 999998 5432 377776 88999888766542 2223222222
Q ss_pred HHHHHH-----------HHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH----------H
Q 018243 245 CAAALV-----------ALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL----------Y 303 (359)
Q Consensus 245 ~~~~~~-----------~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~ 303 (359)
++.... .+....+..++++.++++++.+.|+++||+++. ++..+.++|+.+..+... +
T Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~lp~~~~~~~~~~g~~~ 438 (500)
T 3tcm_A 360 LASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQKAIEAAKAANKAP 438 (500)
T ss_dssp HHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEECCEECCCHHHHHHHHHHTSCH
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEeeeecCchhhHHHHHhcCCCc
Confidence 222221 122334446777889999999999999999875 455777888666532211 1
Q ss_pred HHHH-HHHHHhcCceeccCC-------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 304 AACL-LKKLEEHGVLVMPES-------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 304 ~~~~-~~~l~~~gi~~~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
...+ .+.|.++||.++|+. ..++|+++. .+++++++++++|+++++++.++..
T Consensus 439 ~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~~~~ 499 (500)
T 3tcm_A 439 DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFMSEYR 499 (500)
T ss_dssp HHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233 355588999998753 346999996 8899999999999999999877653
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=248.11 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=237.6
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCC--ChHHHHHHHHHHHHhC--C--CCeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMH--DPTAFRLETEMAKVMG--K--EAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~--~~~~~~l~~~la~~~~--~--~~~~~~~~gt~a~~~~l~~~~ 74 (359)
..+|||.++.+..+ +|.+.+++.+.... ...|+. .+...++++.+++++| . +..++++||++++..++..++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~ 111 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT 111 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC
Confidence 35689998876644 48898888775433 223332 2344566666777777 2 235778888889999999887
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeeecC--C--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--Q--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
++|++|+++.|+|.+... .+...|.+++.++.+ . ++.+|++++++.++ + +++|+++++ +|||
T Consensus 112 -~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~--------~-~~~v~i~~p-~npt 177 (391)
T 4dq6_A 112 -KANDKIMIQEPVYSPFNS---VVKNNNRELIISPLQKLENGNYIMDYEDIENKIK--------D-VKLFILCNP-HNPV 177 (391)
T ss_dssp -CTTCEEEECSSCCTHHHH---HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--------T-EEEEEEESS-BTTT
T ss_pred -CCCCEEEEcCCCCHHHHH---HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--------c-CCEEEEECC-CCCC
Confidence 599999999999888654 367788899988765 2 34589999999998 6 888888665 6699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc---CccEEEEeccccCCCce-e-eEEecC-HHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ---AADSASVCLSKGLGAPV-G-SVIVGS-KEF 223 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~---~~d~~~~s~~K~~g~~~-g-g~~~~~-~~~ 223 (359)
|.+++.+++++|+++|++||+++|+|++|..+..... ..+...+.. ...+++.|+||++|.++ + |+++.+ +++
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 257 (391)
T 4dq6_A 178 GRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKD 257 (391)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHH
Confidence 9999999999999999999999999999865443211 112222211 22255669999997543 2 777775 488
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccc
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
.+.++......+.. ..+...++++..+++ .+.++.+++..++++++.+.|++ +|++.+.. +..+.++|+.++.
T Consensus 258 ~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~- 334 (391)
T 4dq6_A 258 YKLLDDAFTRIDIK-RNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRK-PEGTYLLWVDFSA- 334 (391)
T ss_dssp HHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CSBSSEEEEECGG-
T ss_pred HHHHHHHHHhhcCC-CCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecC-CCccEEEEEEhhh-
Confidence 88887665544322 123344444444443 33555677788899999999988 68998753 4466677788874
Q ss_pred hHHHHHHHHHHHHhc-CceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLEEH-GVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~-gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.+..++.+.|.++ ||.+.++ +..++|++++ .+++++++++++|++++
T Consensus 335 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 335 LGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp GCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 124778999999776 9999764 3478999996 78999999999999876
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=244.95 Aligned_cols=317 Identities=13% Similarity=0.069 Sum_probs=231.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 11 DTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 11 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
..+..++|.+.+++.+.......+...+...++++.+++++|.+ ..++++||++|+..++.++. ++|++|+++.++|
T Consensus 7 ~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~ 85 (352)
T 1iug_A 7 PGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-APGERVLVPVYGK 85 (352)
T ss_dssp SSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEECSH
T ss_pred CCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-CCCCeEEEEeCCc
Confidence 34556669999999987644322333445789999999999987 34777889999999999987 5999999999998
Q ss_pred ceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 89 IHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
++... ...+...|.+++.++.+.++.+|++++++ +++++|++++ ++||||.+++ +++|.++|++
T Consensus 86 ~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-----------~~~~~v~~~~-~~nptG~~~~---l~~i~~l~~~ 149 (352)
T 1iug_A 86 FSERF-YEIALEAGLVVERLDYPYGDTPRPEDVAK-----------EGYAGLLLVH-SETSTGALAD---LPALARAFKE 149 (352)
T ss_dssp HHHHH-HHHHHHTTCEEEEEECCTTCCCCTTTSCC-----------SSCSEEEEES-EETTTTEECC---HHHHHHHHHH
T ss_pred hhHHH-HHHHHHcCCceEEEeCCCCCCCCHHHHhc-----------cCCcEEEEEE-ecCCcceecC---HHHHHHHHHh
Confidence 88641 12345578899999887777788876654 2567888854 5669999988 7899999999
Q ss_pred c--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH---------HHHHH----H
Q 018243 169 H--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK---------ARRLR----K 232 (359)
Q Consensus 169 ~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~---------~~~~~----~ 232 (359)
| |+++|+|++|+++... .....+ +.|+++.|+||+++++.| |+++.+++.++. ++... .
T Consensus 150 ~~~~~~li~D~a~~~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
T 1iug_A 150 KNPEGLVGADMVTSLLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKE 224 (352)
T ss_dssp HCTTCEEEEECTTTBTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTT
T ss_pred hCCCCEEEEECCccccCcc---eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhhccc
Confidence 9 9999999998765432 112222 578999999998776666 888888887654 22111 1
Q ss_pred hhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHH
Q 018243 233 TLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLK 309 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
....+ ..+.....++..++ +...++.++++.++++++.+.|+++ |+++..+...++++++.++. +.+..++.+
T Consensus 225 ~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 300 (352)
T 1iug_A 225 GESAW-TPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPE--GVPYARVKE 300 (352)
T ss_dssp TCCSS-CCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCT--TCCHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCC--CCCHHHHHH
Confidence 11111 11222233333333 3334557778889999999999998 88875332256788888863 246778999
Q ss_pred HHHhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 310 KLEEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 310 ~l~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.|.++||.+.++ +..++|++++...+++++++++++|+++++++
T Consensus 301 ~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 301 AFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 998889999776 35789999987789999999999999998876
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=250.80 Aligned_cols=335 Identities=13% Similarity=0.059 Sum_probs=239.1
Q ss_pred ccccccCCCCCChH----HHHHHHH--HcCCCC----CCccCCChHHHHHHHHHHHHhCCCC-e-EEcCCchHHHH--HH
Q 018243 4 RTVDLRSDTVTKPT----EAMRAAM--ASAEVD----DDVLMHDPTAFRLETEMAKVMGKEA-G-LFVPSGTMGNL--IS 69 (359)
Q Consensus 4 ~~id~~~~~~~~~~----~~~~~a~--~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~~-~-~~~~~gt~a~~--~~ 69 (359)
..|||..+.+.... +.+.+++ .+.... ...|+..++..++++.++++++.+. . ++++|+++++. .+
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 113 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVI 113 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHH
Confidence 45889888766433 2466665 443322 2346666788999999999998763 3 45555556663 56
Q ss_pred HHHhhhh--c----------CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 70 VLVHCET--R----------GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 70 l~~~~~~--~----------g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
+..++ . + ||+|++++|+|..... .++..|.+++.++.+.++ +|++.|++.+++ +++
T Consensus 114 ~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~---~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~-------~~~ 181 (427)
T 3ppl_A 114 SWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFS---ITERFGFEMISVPMNEDG-PDMDAVEELVKN-------PQV 181 (427)
T ss_dssp HHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHH---HHHHTTCEEEEEEEETTE-ECHHHHHHHTTS-------TTE
T ss_pred HHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHH---HHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc-------CCC
Confidence 66665 3 4 8999999999887554 377789999999877665 899999999953 689
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHH-HHcCcEEEEecccccchhhhcC---chhHhh-----hcCccEEEEecccc
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIA-KKHGLKLHIDGARIFNAAVALG---VPVRRL-----VQAADSASVCLSKG 208 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~-~~~~~~li~D~a~~~~~~~~~~---~~~~~~-----~~~~d~~~~s~~K~ 208 (359)
++|++.+.++||||.+++.+++++|+++| ++||++||+|++|....+...+ .+...+ ..+.++++.|+||+
T Consensus 182 ~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 261 (427)
T 3ppl_A 182 KGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI 261 (427)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT
T ss_pred eEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc
Confidence 99998778889999999999999999999 9999999999997643332212 123332 12334666699998
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH------HHhHHHHhhhHHHHHHHHHHHHhc----C
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL------QENVLVMLDGDHKKAKLLAEGLNQ----L 277 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~l~~~l~~----~ 277 (359)
++.+.+ ||++.++++++.+.......+.+.+... +.++...+ ....++.++.+.++++.+.+.|.+ +
T Consensus 262 ~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~--q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~ 339 (427)
T 3ppl_A 262 TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVN--QLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEY 339 (427)
T ss_dssp SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHH--HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHH--HHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 543334 8999999999998877766555443332 33332222 233444555566666666666644 3
Q ss_pred CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC----------CCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE----------SSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+++.+. .+..++++|+.++.. +..++.+.|.++||.+.++ +.+++|++++ ..+++++++++++|.
T Consensus 340 ~~~~~~-~p~~g~~~~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~-~~~~~~i~~~~~~l~ 414 (427)
T 3ppl_A 340 GVAQWT-VPAGGYFISLDVVPG---TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPS-LPPVEELEVAMDGVA 414 (427)
T ss_dssp TCCEEC-CCSBSSCEEEECSTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCS-SSCHHHHHHHHHHHH
T ss_pred CceEEe-CCCccEEEEEECCcc---hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECC-CCCHHHHHHHHHHHH
Confidence 346653 355789999999863 5778889999999999873 3578999996 348999999999999
Q ss_pred HHHHHHHhhc
Q 018243 348 KIYAGVCEEN 357 (359)
Q Consensus 348 ~~~~~~~~~~ 357 (359)
++++++..++
T Consensus 415 ~~l~~~~~~~ 424 (427)
T 3ppl_A 415 TCVLLAAAEH 424 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=252.19 Aligned_cols=336 Identities=15% Similarity=0.089 Sum_probs=237.9
Q ss_pred ccccccCCCCC---ChH-HHHHHHHH--cCCCC---CCcc-CCChHHHHHHHHHHHHhCCCC-e-EEcCCchHHHH--HH
Q 018243 4 RTVDLRSDTVT---KPT-EAMRAAMA--SAEVD---DDVL-MHDPTAFRLETEMAKVMGKEA-G-LFVPSGTMGNL--IS 69 (359)
Q Consensus 4 ~~id~~~~~~~---~~~-~~~~~a~~--~~~~~---~~~~-~~~~~~~~l~~~la~~~~~~~-~-~~~~~gt~a~~--~~ 69 (359)
..|||..+.+. +|. +.+.+++. +.... ...| +..++..++++.++++++.+. . ++++|+++++. .+
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 46899998887 555 47888875 43321 2356 667788999999999998763 3 55555666775 66
Q ss_pred HHHhhhh-c---------CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 70 VLVHCET-R---------GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 70 l~~~~~~-~---------g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+..++.. + |++|+++.|+|..... .+...|.+++.++.+.++ +|+++|++.+++. +++++
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~------~~~~~ 175 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL---LLQTLGFELLTVDMQSDG-PDVDAVERLAGTD------PSVKG 175 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH---HHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC------TTEEE
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHHH---HHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC------CCceE
Confidence 6666631 5 5899999999877554 367788899999876654 8999999999521 68999
Q ss_pred EEEeccccCCCceecChhhHHHHHHHH-HHcCcEEEEecccccchhhh-c---CchhHhh-----hcCccEEEEeccccC
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIA-KKHGLKLHIDGARIFNAAVA-L---GVPVRRL-----VQAADSASVCLSKGL 209 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~-~~~~~~li~D~a~~~~~~~~-~---~~~~~~~-----~~~~d~~~~s~~K~~ 209 (359)
|++.+.++||||.+++.+++++|+++| ++||+++|+|++|....+.. . ..+...+ ..+.++++.|+||++
T Consensus 176 v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 255 (423)
T 3ez1_A 176 ILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT 255 (423)
T ss_dssp EEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc
Confidence 988778888999999999999999999 99999999999986433221 1 1122222 113346666999975
Q ss_pred CCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-------HhHHHHhhhHHHHHHHHHHHH----hcC
Q 018243 210 GAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-------ENVLVMLDGDHKKAKLLAEGL----NQL 277 (359)
Q Consensus 210 g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~l~~~l----~~~ 277 (359)
+.+.+ ||++.++++++.++......+.+.+... +.++...++ ...++.++.+.++++.+.+.| .++
T Consensus 256 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (423)
T 3ez1_A 256 FAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVE--QARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEG 333 (423)
T ss_dssp CSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHH--HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHH--HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 43334 8999999999998877766555443332 233322222 233334444445555555544 445
Q ss_pred C-CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC----------CCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 278 K-GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE----------SSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 278 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+ ++.+. .+..++++|+.++.. +.+.+.+.|.++||.+.++ +.+++||+++. .+++++++++++|
T Consensus 334 ~~~~~~~-~p~~g~~~~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l 408 (423)
T 3ez1_A 334 GEYATWT-LPKGGYFISLDTAEP---VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR-PPVEEVRTAMQVV 408 (423)
T ss_dssp TSSEEEC-CCSBSSCEEEEESSS---CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS-SCHHHHHHHHHHH
T ss_pred CCceEEe-CCCccEEEEEECCCC---cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC-CCHHHHHHHHHHH
Confidence 2 26653 456888999999863 5678888899999999872 24789999963 4999999999999
Q ss_pred HHHHHHHHhh
Q 018243 347 QKIYAGVCEE 356 (359)
Q Consensus 347 ~~~~~~~~~~ 356 (359)
+++++++..+
T Consensus 409 ~~~l~~~~~~ 418 (423)
T 3ez1_A 409 AACIRLATEE 418 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=246.57 Aligned_cols=320 Identities=15% Similarity=0.078 Sum_probs=232.2
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
.+|||.++... +++|.+.+++.+.......|.. +...++++.++++++.+ ..++++||++++..++..+ +|++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~---~gd~ 100 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-ADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL---KPRR 100 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH---CCSE
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc---CCCe
Confidence 47899887653 4568999999886543334543 46789999999999975 3466677778888888777 5699
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCC-HHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMD-IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
|+++.|+|.+... .+...|.+++.++.+.+..++ ++++.+.++ +++++|+++++ +||||.++|.+++
T Consensus 101 vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~--------~~~~~v~i~~p-~nptG~~~~~~~l 168 (364)
T 1lc5_A 101 AMIVTPGFAEYGR---ALAQSGCEIRRWSLREADGWQLTDAILEALT--------PDLDCLFLCTP-NNPTGLLPERPLL 168 (364)
T ss_dssp EEEEESCCTHHHH---HHHHTTCEEEEEECCGGGTTCCCTTHHHHCC--------TTCCEEEEESS-CTTTCCCCCHHHH
T ss_pred EEEeCCCcHHHHH---HHHHcCCeEEEEeCCcccccchhHHHHHhcc--------CCCCEEEEeCC-CCCCCCCCCHHHH
Confidence 9999999887554 366778899888766422234 455666565 56788888666 6799999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCce--eeEEe-cCHHHHHHHHHHHHhh
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPV--GSVIV-GSKEFIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~--gg~~~-~~~~~~~~~~~~~~~~ 234 (359)
++|+++|++||+++|+|++|..+... +.+..... .+.++++.|+||++|.++ .|+++ .++++.+.++.....
T Consensus 169 ~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~- 245 (364)
T 1lc5_A 169 QAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP- 245 (364)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-
T ss_pred HHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC-
Confidence 99999999999999999998654332 22222221 234567779999998543 28888 899998887665432
Q ss_pred CCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+..+...++++..+++ .+.++.+++..++++++.+.|+++|++.+. +..++++++.++. +..++.+.|.
T Consensus 246 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~~----~~~~l~~~l~ 316 (364)
T 1lc5_A 246 ---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRCER----EDIDLQRRLL 316 (364)
T ss_dssp ---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEESC----TTCCHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC--CCCCeEEEEECCC----cHHHHHHHHH
Confidence 2234455555555553 345556667788899999999998888874 3467888888864 3457888998
Q ss_pred hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 313 ~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++||.+.++. ..++|+++. +++++++++++|+++++++.
T Consensus 317 ~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 317 TQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp TTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred HCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 8999997753 468999984 68899999999999887653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=246.82 Aligned_cols=327 Identities=19% Similarity=0.184 Sum_probs=236.3
Q ss_pred cccccCCCC-CC-hHHHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhh
Q 018243 5 TVDLRSDTV-TK-PTEAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 5 ~id~~~~~~-~~-~~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~ 74 (359)
++||.++.+ .. ++|.+.+++.+.... ...|+..+...++++.+++++|.+..+++++|++++..++..+.
T Consensus 48 ~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~ 127 (401)
T 2bwn_A 48 ITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLR 127 (401)
T ss_dssp EEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHh
Confidence 578887655 32 457788887664321 11345567889999999999999888888999998887777654
Q ss_pred -hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 75 -ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 75 -~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
..+|+.|+++.++|.+... . ++..|++++.++.+ |++++++.+++... +++++|++++ ++||||.+
T Consensus 128 ~~~~gd~Vl~~~~~~~~~~~-~--~~~~g~~~~~v~~~-----d~~~le~~l~~~~~----~~~~~v~~~~-~~nptG~~ 194 (401)
T 2bwn_A 128 VLFPGLIIYSDSLNHASMIE-G--IKRNAGPKRIFRHN-----DVAHLRELIAADDP----AAPKLIAFES-VYSMDGDF 194 (401)
T ss_dssp HHSTTCEEEEETTCCHHHHH-H--HHHSCCCEEEECTT-----CHHHHHHHHHHSCT----TSCEEEEEES-BCTTTCCB
T ss_pred cCCCCCEEEECchhhHHHHH-H--HHHcCCeEEEEcCC-----CHHHHHHHHHhhcc----CCceEEEEec-CcCCCCCc
Confidence 2489999999999988765 2 56788899888765 78899988873210 3678888855 55599999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh---hhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR---LVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~ 230 (359)
++ +++|.++|++||+++|+|++|+.+.+...+..... +....++++.|+||.+|+ .||++++++++.+.++..
T Consensus 195 ~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~~~~~~l~~~ 270 (401)
T 2bwn_A 195 GP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASARMVDAVRSY 270 (401)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCHHHHHHHHHh
Confidence 88 89999999999999999999986554333322221 112357778899999996 457888899888887654
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHh----HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVALQEN----VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
...+..+...++..++++..+++.. .++.+++..++++++.+.|+++ |+++.. ..++++++.++. +.+..+
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~--~~~~~~ 345 (401)
T 2bwn_A 271 APGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID--HGSHIVPVVIGD--PVHTKA 345 (401)
T ss_dssp CHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC--CSSSCEEEECCC--HHHHHH
T ss_pred CcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC--CCCCeEEEEeCC--hHHHHH
Confidence 3322222222334444444555321 2446777888999999999988 887753 245688888864 357788
Q ss_pred HHHHH-HhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKL-EEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l-~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++| .++||.+.++ +..++|++++..++++++++++++|+++++++
T Consensus 346 ~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 346 VSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp HHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999 5899999654 23589999988889999999999999987654
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=249.98 Aligned_cols=332 Identities=13% Similarity=0.075 Sum_probs=237.1
Q ss_pred ccccccCCCC------CChHHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh----CCC---CeEEcCCchHHHHHH
Q 018243 4 RTVDLRSDTV------TKPTEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM----GKE---AGLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~------~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~----~~~---~~~~~~~gt~a~~~~ 69 (359)
.+|||..+.+ ..+.+.+.+++.+... ....|+...+..++++.+++++ +.+ ..++++||++|+..+
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~ 118 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHL 118 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHH
Confidence 5688888854 3445889999877542 1234666667889999999877 344 457778888899999
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec-CCCCCCCHHHHHHHhcCCCCCccCCcee-EEEEecccc
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTR-LICLENTHA 147 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~v~i~~~~~ 147 (359)
+.+++ ++||+|+++.|+|.+... .+...|.+++.++. ++++.+|++.|++.+++... ++++ +++++++.+
T Consensus 119 ~~~l~-~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~----~~~~~~vi~~~p~~ 190 (418)
T 3rq1_A 119 IHNYT-EPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA----KQTNVVVIFNTPGN 190 (418)
T ss_dssp HHHHS-CTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH----HCSEEEEEEECSSC
T ss_pred HHHhc-CCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc----cCCCEEEEEeCCCC
Confidence 98887 599999999999877553 37788999999976 35578999999999972000 1455 666655537
Q ss_pred CCCceecChhhHHHHHHHHH------HcCcEEEEecccccchhhhcCchhHhhh---c--Ccc---EEEEeccccCCCce
Q 018243 148 NCGGRCLSVEYTDSVGEIAK------KHGLKLHIDGARIFNAAVALGVPVRRLV---Q--AAD---SASVCLSKGLGAPV 213 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~------~~~~~li~D~a~~~~~~~~~~~~~~~~~---~--~~d---~~~~s~~K~~g~~~ 213 (359)
||||.+++.+++++|+++|+ +||+++|+||+|.... +.+.....+. . ..+ +++.|+||.+|.++
T Consensus 191 NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G 268 (418)
T 3rq1_A 191 NPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS--GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG 268 (418)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS--SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc--CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC
Confidence 79999999999999999999 8999999999974322 2222222221 1 123 44559999998654
Q ss_pred e--eEEec---CHHHHHHHHHHHHhhC--CCcchhHHHHHHHHHHHHH---------hHHHHhhhHHHHHHHHHHHHhcC
Q 018243 214 G--SVIVG---SKEFIKKARRLRKTLG--GGMRQVGVLCAAALVALQE---------NVLVMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 214 g--g~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~l~~~l~~~ 277 (359)
. ||+++ ++++++.+........ .....+...+.++...++. ..+..++++.++++++.+.|+++
T Consensus 269 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 348 (418)
T 3rq1_A 269 QRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV 348 (418)
T ss_dssp SCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 88887 8999988876554321 1111233344444444421 12234566778889999999988
Q ss_pred CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
|+++. ++..+.++|+.+. +..++.+.|.++||.+.|++ +++||++. .++++++++++++|+++++++.
T Consensus 349 -g~~~~-~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~-~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 349 -GLPML-PYRGGFFITIPTD-----SANAICEELKKEHIYVIALA-NGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp -TCCCC-CCCSSSEEEEECT-----THHHHHHHHHHTTEECEECS-SEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred -CCCCC-CCCceEEEEcCCC-----CHHHHHHHHHhCCEEEecCC-CCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 88774 3446667777664 45688888999999999874 67999986 5799999999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=250.77 Aligned_cols=327 Identities=15% Similarity=0.087 Sum_probs=239.1
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe---EEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG---LFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
-+.+..+..+++++.+++.+....+......+...++++.++++++.+.. ++++||++|+..++..++ ++||+|++
T Consensus 15 ~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-~~gd~Vl~ 93 (411)
T 3nnk_A 15 LLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-RPGDKVLV 93 (411)
T ss_dssp EEESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred eeecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-CCCCEEEE
Confidence 34445566667999999988643332222235568999999999998753 556678999999999997 59999999
Q ss_pred cCCCccee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 84 GDNSHIHI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+.++|++. +. ..+...|.+++.++.+.++.+|+++|++.+++ .++++|+++++ +||||.+.+ +++|
T Consensus 94 ~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~---l~~i 160 (411)
T 3nnk_A 94 PVFGRFGHLLC--EIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP---LAEL 160 (411)
T ss_dssp EECSHHHHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC---CTTH
T ss_pred ecCCchHHHHH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc---HHHH
Confidence 99998763 32 33677899999999888888999999999983 37899999665 569999988 7899
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH---------
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK--------- 232 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~--------- 232 (359)
.++|++||+++|+|++|+++... ..... .++|+++.|+||+++++.| |+++.++++.+.++....
T Consensus 161 ~~l~~~~~~~li~Dea~~~~~~~---~~~~~--~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 235 (411)
T 3nnk_A 161 GEICRRYDALFYTDATASLGGNP---LETDV--WGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDA 235 (411)
T ss_dssp HHHHHHHTCEEEEECTTTBTTBC---CCTTT--TTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTT
T ss_pred HHHHHHcCCEEEEECCcccCCcc---cchhc--cCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccc
Confidence 99999999999999998665432 11222 2688999999999766666 899999999888764320
Q ss_pred ------------------------hhCCC-cchhHHHHHHHHHHHH---H-hHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 233 ------------------------TLGGG-MRQVGVLCAAALVALQ---E-NVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 233 ------------------------~~~~~-~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
..+.. ...+....++...+++ . ..++..++..++++++.+.|+++ ++++.
T Consensus 236 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (411)
T 3nnk_A 236 HRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETF 314 (411)
T ss_dssp CCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred cccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeC
Confidence 00000 0112222222333332 2 24457778889999999999998 88775
Q ss_pred cCCc--cceEEEEEeccchHHHHHHHHHHHHh-cCceeccC----CCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 284 VDAV--ETNIVYFEITEDSKLYAACLLKKLEE-HGVLVMPE----SSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~----~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.++. .+.++++.++. +.+..++.+.|.+ +||.+.++ ...++|+++ +...+++++++++++|+++++++..
T Consensus 315 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQ--GINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp SCGGGBCSSEEEEECCT--TCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcccccccEEEEECCC--CCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3321 35678888763 2467889999955 59999764 456899998 6566899999999999999987653
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=248.86 Aligned_cols=336 Identities=19% Similarity=0.248 Sum_probs=235.0
Q ss_pred ccccccCCCCCChH--HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhh---cC
Q 018243 4 RTVDLRSDTVTKPT--EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCET---RG 78 (359)
Q Consensus 4 ~~id~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~---~g 78 (359)
.++||.++... +. +.+.+++.. +...|+..+...++++.++++++.+..++++||++|+..++..++.. +|
T Consensus 44 ~ylD~~~~~~~-~~v~~a~~~~~~~---~~~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~G 119 (467)
T 1ax4_A 44 VYIDLLTDSGT-NAMSDHQWAAMIT---GDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEG 119 (467)
T ss_dssp CSEECSCSSSC-CCEEHHHHHHHHT---CCCCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeecccCcCC-HHHHHHHHHHHhh---cccccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCC
Confidence 46788776655 22 445555443 33457777889999999999999988899999999999999998732 89
Q ss_pred Ce---EEecCCCcceeeccccccccCCccceeeecC----------CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 79 SE---VILGDNSHIHIYENGGISTIGGVHPRTVKNN----------QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 79 ~~---vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----------~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
|+ |+++ ..|+..+. ......|.+++.++.. .++.+|+++|++.+++.. .+++++|+++++
T Consensus 120 d~~~~viv~-~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~----~~~~~~vi~~~~ 192 (467)
T 1ax4_A 120 KAKNPVFIS-NFHFDTTA--AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG----ADNIVAIVSTVT 192 (467)
T ss_dssp CCSSCEEEE-SSCCHHHH--HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC----GGGEEEEEEESS
T ss_pred CccceEEEe-ccccchhh--HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC----CCCeeEEEEecc
Confidence 98 8888 55544443 2355667666655321 245789999999998310 026899999666
Q ss_pred ccCCC-ceecChhhHHHHHHHHHHcCcEEEEeccccc-chh-------hhcCchhHhhh----cCccEEEEeccccCCCc
Q 018243 146 HANCG-GRCLSVEYTDSVGEIAKKHGLKLHIDGARIF-NAA-------VALGVPVRRLV----QAADSASVCLSKGLGAP 212 (359)
Q Consensus 146 ~~~pt-G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~-~~~-------~~~~~~~~~~~----~~~d~~~~s~~K~~g~~ 212 (359)
+ ||| |.+++.+++++|+++|++||+++|+|++|.+ +.. .+.+.+..++. ..+|++++|+||++|.|
T Consensus 193 ~-np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~ 271 (467)
T 1ax4_A 193 C-NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN 271 (467)
T ss_dssp B-TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS
T ss_pred c-cCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC
Confidence 5 588 8999999999999999999999999999766 332 23344444442 35788889999999988
Q ss_pred eeeEEecC-H-HHHHHHHHHHHhhCC--Ccch-hHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCC
Q 018243 213 VGSVIVGS-K-EFIKKARRLRKTLGG--GMRQ-VGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDA 286 (359)
Q Consensus 213 ~gg~~~~~-~-~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~ 286 (359)
.||+++.+ + ++.+.+......++. .... +.....+...+++...+ +.+++..++++++.+.|++. ++.+. .+
T Consensus 272 ~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~ 349 (467)
T 1ax4_A 272 IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQ-YP 349 (467)
T ss_dssp SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-SS
T ss_pred cceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC-CCCcc-cC
Confidence 78888876 7 888877655443221 1111 11111111223433221 23444557778899999884 88764 34
Q ss_pred ccceEEEEE-------eccchHHHHHHHHHHH-HhcCceecc-C----------C------CcEEEEEeC-CCCCHHHHH
Q 018243 287 VETNIVYFE-------ITEDSKLYAACLLKKL-EEHGVLVMP-E----------S------STRVRIVVH-HQISANDVH 340 (359)
Q Consensus 287 ~~~~~~~~~-------~~~~~~~~~~~~~~~l-~~~gi~~~~-~----------~------~~~lRi~~~-~~~~~~~i~ 340 (359)
..+.++|+. ++. .+.+..++.++| .++||.+.+ + + .+++|++++ ..+++++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 428 (467)
T 1ax4_A 350 TGGHAVFVDCKKLVPQIPG-DQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMD 428 (467)
T ss_dssp CCSSEEEEESTTTCTTSCG-GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHH
T ss_pred CCceEEEEehhhhcccccc-CCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHH
Confidence 578888888 432 234678899999 999999876 2 1 268999987 348999999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAGVC 354 (359)
Q Consensus 341 ~~~~~l~~~~~~~~ 354 (359)
+++++|++++++..
T Consensus 429 ~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 429 YIADALIGLKEKFA 442 (467)
T ss_dssp HHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887753
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=244.92 Aligned_cols=330 Identities=12% Similarity=0.077 Sum_probs=235.7
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC-CCccCCChHHHH-HHHHHHHHh----C--C--CCeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD-DDVLMHDPTAFR-LETEMAKVM----G--K--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~-~~~~~~~~~~~~-l~~~la~~~----~--~--~~~~~~~~gt~a~~~~l~~ 72 (359)
++|||.++.+. .++|.+.+++.+.... ...|+.. ..+ +++.+++++ | . +..++++||++++..++.+
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 57899887664 4568899988875432 2334433 566 888888876 4 2 2346677777888888888
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC---CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD---GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
++ ++|++|+++.|+|.+... .+...|.+++.++.+.+ +.+|+++|++.+++ .++++|++++ ++||
T Consensus 107 l~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-------~~~~~v~l~~-p~np 174 (390)
T 1d2f_A 107 WS-ETGEGVVIHTPAYDAFYK---AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-------PECKIMLLCS-PQNP 174 (390)
T ss_dssp SS-CTTCEEEEEESCCHHHHH---HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-------TTEEEEEEES-SCTT
T ss_pred hc-CCCCEEEEcCCCcHHHHH---HHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-------CCCeEEEEeC-CCCC
Confidence 87 589999999999887654 26677888888876433 35899999999983 3789998865 5779
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCc-cEEEEeccccCCCce-e-eEEec-CHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAA-DSASVCLSKGLGAPV-G-SVIVG-SKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~-d~~~~s~~K~~g~~~-g-g~~~~-~~~~~ 224 (359)
||.++|.+++++|+++|++||+++|+||+|..+..... ..+...+.... |. +.|+||++|.++ . |+++. ++++.
T Consensus 175 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~ 253 (390)
T 1d2f_A 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSR 253 (390)
T ss_dssp TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHH
Confidence 99999999999999999999999999999865433211 11222332222 66 779999998543 2 77776 57888
Q ss_pred HHHHHHHH-hhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccc
Q 018243 225 KKARRLRK-TLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
+.++.... ....+ ..+...++++..+++ .+.++.++++.++++++.+.|++ +|++.+. ++..+.++|+.++..
T Consensus 254 ~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~ 331 (390)
T 1d2f_A 254 DAYLSALKGRDGLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRPL 331 (390)
T ss_dssp HHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGGG
T ss_pred HHHHHHHhhhcccC-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe-cCCccEEEEEEcccc
Confidence 88776554 22221 123344444444443 34555667788889999999998 7888764 344556678888641
Q ss_pred hHHHHHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 300 ~~~~~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+..++.+.|. ++||.+.++. ..++|++++ .+++++++++++|+++++++
T Consensus 332 -~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 332 -NIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG--CPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp -CCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHhh
Confidence 135678999997 7899997753 468999996 46899999999999998765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=245.71 Aligned_cols=326 Identities=13% Similarity=0.139 Sum_probs=230.0
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCC----CC-ccC----CChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhh
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVD----DD-VLM----HDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~----~~-~~~----~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~ 74 (359)
|.|+......++|.+.+++.+.... .. .|. ..+...++++.+++++|.+. .++++||++|+..++.++.
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~ 81 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA 81 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhh
Confidence 3444444555567777777653321 11 111 13455789999999999874 4677888889999988887
Q ss_pred h---hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 E---TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~---~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
. ++||+|+++.++|.+...........|++++.++.++++.+|+++|++.++ +++++|++++ ++||||
T Consensus 82 ~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~-~~nptG 152 (382)
T 4hvk_A 82 MRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR--------DDTILVSVQH-ANNEIG 152 (382)
T ss_dssp HHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC--------TTEEEEECCS-BCTTTC
T ss_pred hhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc--------cCceEEEEEC-CCCCce
Confidence 3 599999999999988765211233468899999888889999999999998 6889998855 556999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLR 231 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~ 231 (359)
.+.+ +++|.++|++||+ +|+|++|+++... ...... +.|+++.|+||++|.++.|+++.+++. .++...
T Consensus 153 ~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~---~~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~ 221 (382)
T 4hvk_A 153 TIQP---VEEISEVLAGKAA-LHIDATASVGQIE---VDVEKI--GADMLTISSNDIYGPKGVGALWIRKEA--KLQPVI 221 (382)
T ss_dssp BBCC---HHHHHHHHSSSSE-EEEECTTTBTTBC---CCHHHH--TCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSS
T ss_pred eeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCC---CCchhc--CCCEEEEeHHHhcCCCceEEEEEcCcc--CcCccc
Confidence 9988 7899999999999 9999998765432 222222 678999999998774323666654432 111110
Q ss_pred H-------hhCCCcchhHHHHHHHHHH---HHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc-c-ceEEEEEeccc
Q 018243 232 K-------TLGGGMRQVGVLCAAALVA---LQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV-E-TNIVYFEITED 299 (359)
Q Consensus 232 ~-------~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~-~~~~~~~~~~~ 299 (359)
. ....+. +....++...+ +....++..++..++++++.+.|+++|++++..++. . .+++++.++.
T Consensus 222 ~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (382)
T 4hvk_A 222 LGGGQENGLRSGSE--NVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY- 298 (382)
T ss_dssp CSSCTGGGTSCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-
T ss_pred ccCCCcCccccCCc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECC-
Confidence 0 001111 12222222222 234455577788899999999999988988754321 1 3467777764
Q ss_pred hHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 300 SKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
.+..++.+.|.++||.+.++. ..++|++++..++++++++++++|+++++++.+.
T Consensus 299 --~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 299 --IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp --CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999997653 5789999988899999999999999999988754
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=247.40 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=235.4
Q ss_pred CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 12 TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 12 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
.+..+++++.+++.+....+..+...+...++++.++++++.+. .++++||++|+..++..+. ++||+|+++.++|
T Consensus 30 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 30 GPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-EPGDSFLTGTNGI 108 (393)
T ss_dssp SCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-CTTCEEEEEESSH
T ss_pred CCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-CCCCEEEEEeCCc
Confidence 44455699999998854343222234566889999999999863 3677899999999999987 5999999999887
Q ss_pred cee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH
Q 018243 89 IHI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK 167 (359)
Q Consensus 89 ~~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~ 167 (359)
++. +. ..+...|.+++.++.+.++.+|+++|++.+++ .++++|+++++ +||||.+++ +++|.++|+
T Consensus 109 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~---l~~i~~l~~ 175 (393)
T 3kgw_A 109 WGMRAA--EIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP---LDGFGELCH 175 (393)
T ss_dssp HHHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC---CTTHHHHHH
T ss_pred hhHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc---HHHHHHHHH
Confidence 642 22 33667888999998888888999999999982 28899999665 669999988 789999999
Q ss_pred HcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH--------------
Q 018243 168 KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK-------------- 232 (359)
Q Consensus 168 ~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~-------------- 232 (359)
+||+++|+|++|+++... ..... .+.|+++.|+||+++++.| |+++.++++++.+.....
T Consensus 176 ~~~~~li~De~~~~g~~~---~~~~~--~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (393)
T 3kgw_A 176 RYQCLLLVDSVASLGGVP---IYMDQ--QGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAK 250 (393)
T ss_dssp HTTCEEEEECTTTTTTSC---CCTTT--TTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHH
T ss_pred HcCCEEEEECCccccCcc---cchhh--cCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHH
Confidence 999999999998755332 11111 2678999999998866666 889999999888653221
Q ss_pred hhCC-------CcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC---ccceEEEEEecc
Q 018243 233 TLGG-------GMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA---VETNIVYFEITE 298 (359)
Q Consensus 233 ~~~~-------~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~~~~~~~~~~~~ 298 (359)
.++. ....+....++...+++ ...++..++..++++++.+.|+++ ++++..+. ..+.++++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 3kgw_A 251 LWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPA 329 (393)
T ss_dssp HTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCT
T ss_pred hhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCC
Confidence 1110 01112222233333332 234557778889999999999998 88764322 124556677753
Q ss_pred chHHHHHHHHHHHHhc-CceeccC----CCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 299 DSKLYAACLLKKLEEH-GVLVMPE----SSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 299 ~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+.+..++.++|.++ ||.+.++ ..+++|+++ +...+++++++++++|+++++++.+
T Consensus 330 --~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 330 --GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp --TBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred --CCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 24678899999666 9999765 457899998 5446999999999999999988754
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=247.68 Aligned_cols=325 Identities=14% Similarity=0.150 Sum_probs=229.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC---C-C-ccCC----ChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD---D-D-VLMH----DPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~---~-~-~~~~----~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
++|+.+. ..+++.+++++.+.... . . .|.. .+...++++.+++++|.+ ..++++||++|+..++.++
T Consensus 3 yld~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 3 YFDYTSA--KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp BCBTTTC--CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred eeccCCC--CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHH
Confidence 4555554 45567777777664321 1 1 1221 246789999999999987 3477788899999999888
Q ss_pred h---hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 C---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
. .++|++|++++++|.+.......+...|++++.++.+.++.+|+++|++.++ +++++|+++ .++|||
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~-~~~npt 151 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR--------DDTILVSVQ-HANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC--------TTEEEEECC-SBCTTT
T ss_pred HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc--------CCCeEEEEe-ccCCCc
Confidence 7 2489999999999987655111123468899999888888899999999998 678888884 556699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHH-HHHH-
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEF-IKKA- 227 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~-~~~~- 227 (359)
|.+++ +++|.++|++||++ |+|++|+++... .....+ +.|+++.|+||++|. .| |+++.+++. +...
T Consensus 152 G~~~~---l~~i~~l~~~~~~~-i~D~a~~~g~~~---~~~~~~--~~di~~~s~sK~~g~-~g~G~~~~~~~~~l~~~~ 221 (382)
T 4eb5_A 152 GTIQP---VEEISEVLAGKAAL-HIDATASVGQIE---VDVEKI--GADMLTISSNDIYGP-KGVGALWIRKEAKLQPVI 221 (382)
T ss_dssp CBBCC---HHHHHHHHTTSSEE-EEECTTTBTTBC---CCHHHH--TCSEEEEETGGGTCC-SSCEEEEEETTCCCCCSS
T ss_pred cccCC---HHHHHHHHHHCCCE-EEEcchhcCCcc---cCcccc--CCCEEEeehHHhcCC-CceEEEEEccccccCcee
Confidence 99988 78999999999999 999998764321 222233 678999999998774 44 666665542 1110
Q ss_pred HH---HHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEEEeccc
Q 018243 228 RR---LRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYFEITED 299 (359)
Q Consensus 228 ~~---~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~ 299 (359)
.. ......++. +.....+...++ +...+..+++..++++++.+.|+++|++++..++. .++++++.++.
T Consensus 222 ~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (382)
T 4eb5_A 222 LGGGQENGLRSGSE--NVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY- 298 (382)
T ss_dssp CSSCTGGGTSCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-
T ss_pred cCCCccccccCCCc--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-
Confidence 00 001111111 222222222222 33445577788889999999999988888753321 25577787764
Q ss_pred hHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 300 SKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+..++.+.|.++||.+.++. ..++|++++..++++++++++++|+++++++++
T Consensus 299 --~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 299 --IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp --SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 367789999988999997653 468999998778999999999999999988765
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=249.50 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=241.1
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh-hhhcCCeE
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH-CETRGSEV 81 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~-~~~~g~~v 81 (359)
..+|||..+.+..+ +.+.+++.+.... ..|..++...++++.++++++.+..++++||++|+..++..+ + ++|++|
T Consensus 30 ~~~id~~~~~~~~~-~~v~~a~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~-~~gd~v 106 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AETDAAIARVLDS-GRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI-GPGDEV 106 (399)
T ss_dssp BCSCCHHHHHHHTH-HHHHHHHHHHHHH-TCCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred CcccccCcCCCCCC-HHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC-CCcCEE
Confidence 45688887766555 7788888764422 246567889999999999999988899999999999999988 5 589999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
+++.++|.+... .+...|.+++.++.++ ++.+|+++|++.++ +++++|++ +||||...+ ++
T Consensus 107 l~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~----~n~tG~~~~---l~ 168 (399)
T 2oga_A 107 IVPSHTYIASWL---AVSATGATPVPVEPHEDHPTLDPLLVEKAIT--------PRTRALLP----VHLYGHPAD---MD 168 (399)
T ss_dssp EEESSSCTHHHH---HHHHTTCEEEEECBCSSSSSBCHHHHHHHCC--------TTEEEECC----BCGGGCCCC---HH
T ss_pred EECCCccHHHHH---HHHHCCCEEEEEecCCCCCCcCHHHHHHhcC--------CCCeEEEE----eCCcCCccC---HH
Confidence 999999888654 3667788999887765 57899999999998 67887774 358999876 89
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEec--cccCCCc-eeeEEec-CHHHHHHHHHHHHhh--
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCL--SKGLGAP-VGSVIVG-SKEFIKKARRLRKTL-- 234 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~--~K~~g~~-~gg~~~~-~~~~~~~~~~~~~~~-- 234 (359)
+|.++|+++|+++|+|++|+.+... .+.. +....|++++|+ +|++|++ .||+++. ++++.+.++......
T Consensus 169 ~i~~l~~~~~~~li~Dea~~~g~~~-~~~~---~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~ 244 (399)
T 2oga_A 169 ALRELADRHGLHIVEDAAQAHGARY-RGRR---IGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR 244 (399)
T ss_dssp HHHHHHHHHTCEECEECTTCTTCEE-TTEE---TTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS
T ss_pred HHHHHHHHcCCEEEEECcccccCcc-CCee---cccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc
Confidence 9999999999999999998765432 2222 222358888888 6999863 4577776 488888877654431
Q ss_pred --------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE--EEeccchHHHH
Q 018243 235 --------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY--FEITEDSKLYA 304 (359)
Q Consensus 235 --------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ 304 (359)
+.+...++..++++..+++...+ ..++..++++++.+.|+++|++++...+..++.+| +.+.. .+.
T Consensus 245 ~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~ 320 (399)
T 2oga_A 245 QKYSHETKGTNSRLDEMQAAVLRIRLAHLDS-WNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT---ERR 320 (399)
T ss_dssp STTCCCSCCCBCCCCHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC---SSH
T ss_pred ccccccccccCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC---CCH
Confidence 12223455666666666655433 66677788899999999988887643333444444 33332 156
Q ss_pred HHHHHHHHhcCceeccCCC---------------------------cEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPESS---------------------------TRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~~~---------------------------~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+.|.++||.+.++.. ..+|++++..++++|+++++++|+++++++
T Consensus 321 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999999865431 579999998999999999999999988765
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=246.40 Aligned_cols=327 Identities=18% Similarity=0.156 Sum_probs=232.6
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCC-------Cc--cCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhh
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDD-------DV--LMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~-------~~--~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~ 74 (359)
+.|+.+....+++.+.+++.+..... .. |...+...++++.+++++|.+ ..++++||++|+..++..+.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~ 82 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVA 82 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhh
Confidence 44555545566688888877643221 01 222455689999999999986 45778888999999999887
Q ss_pred h---hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 E---TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~---~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
. ++|++|++++++|.+.......+...|.+++.++.+.++.+|+++|++.++ +++++|++++ ++||||
T Consensus 83 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~-~~nptG 153 (384)
T 1eg5_A 83 ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD--------EDTFLVSIMA-ANNEVG 153 (384)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC--------TTEEEEEEES-BCTTTC
T ss_pred hhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC--------CCCeEEEEEC-CCCCcc
Confidence 3 489999999999887654111125678899999887788899999999998 6889999965 556999
Q ss_pred eecChhhHHHHHHHHHHcC--cEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHH--HHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHG--LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEF--IKKA 227 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~--~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~--~~~~ 227 (359)
.+++ +++|.++|++|| +++|+|++|+++... .+...+ +.|++++|+||++|.++.|++++++++ ...+
T Consensus 154 ~~~~---~~~i~~l~~~~~~~~~li~Dea~~~~~~~---~~~~~~--~~di~~~s~sK~~g~~G~G~~~~~~~~~~~~~~ 225 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKKNKETLVHVDAVQTIGKIP---FSLEKL--EVDYASFSAHKFHGPKGVGITYIRKGVPIRPLI 225 (384)
T ss_dssp BBCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSC---CCCTTT--CCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSB
T ss_pred cccC---HHHHHHHHHhcCCceEEEEEhhhhcCCcc---cCchhc--CCCEEEecHHHhcCCCceEEEEEcCCCcccccc
Confidence 9998 799999999999 999999998765432 122222 578999999998875333888887764 2111
Q ss_pred HHH---HHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEEEeccc
Q 018243 228 RRL---RKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYFEITED 299 (359)
Q Consensus 228 ~~~---~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~ 299 (359)
... .....++ .+....+++..+++ +..++..+++.++++++.+.|++ +++++..++. ...++++.++.
T Consensus 226 ~~~~~~~~~~~~~--~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~- 301 (384)
T 1eg5_A 226 HGGGQERGLRSGT--QNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPN- 301 (384)
T ss_dssp CSSCTTTTTBCSC--CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTT-
T ss_pred ccCcccccccCCC--CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCC-
Confidence 100 0011112 23333333344443 34455777788899999999998 4888754321 23566777664
Q ss_pred hHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 300 SKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+..++.+.|.++||.+.++. ..++||+++..++++++++++++|+++++++++
T Consensus 302 --~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 302 --IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp --CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred --CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 367789999999999997742 368999998778999999999999999988754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=246.38 Aligned_cols=328 Identities=16% Similarity=0.153 Sum_probs=235.3
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
.+++..+ ...+++.+.+++.+...........+...++++.+++++|.+. .++++||++|+..++..++ ++|++|
T Consensus 20 ~~~~~~g-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~v 97 (393)
T 2huf_A 20 KLLMGPG-PSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL-EDGDVI 97 (393)
T ss_dssp CEECSSS-CCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-CTTCEE
T ss_pred eEEecCC-CCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-CCCCEE
Confidence 3444443 4456689999998865442211123567899999999999874 3577888999999999887 599999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
++++++|++... ...++..|.+++.++.+.++.+|+++|++.++ + ++++|++++ ++||||.++| ++
T Consensus 98 l~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~~v~~~~-~~nptG~~~~---l~ 164 (393)
T 2huf_A 98 LIGHTGHWGDRS-ADMATRYGADVRVVKSKVGQSLSLDEIRDALL--------IHKPSVLFLTQ-GDSSTGVLQG---LE 164 (393)
T ss_dssp EEEESSHHHHHH-HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH--------HHCCSEEEEES-EETTTTEECC---CT
T ss_pred EEECCCcchHHH-HHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHh--------ccCCcEEEEEc-cCCCccccCC---HH
Confidence 999999877421 12345578899999887778899999999998 5 788999965 5569999998 78
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH----Hh--
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR----KT-- 233 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~----~~-- 233 (359)
+|.++|++||+++|+|++|.++... ..... .+.|+++.|+||+++++.| |+++.++++.+.++... ..
T Consensus 165 ~i~~~~~~~~~~li~D~a~~~~~~~---~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T 2huf_A 165 GVGALCHQHNCLLIVDTVASLGGAP---MFMDR--WEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW 239 (393)
T ss_dssp THHHHHHHTTCEEEEECTTTBTTBC---CCTTT--TTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHcCCEEEEEcccccCCCC---cchhh--cCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE
Confidence 9999999999999999998765332 11222 2578999999998765666 88999999888875431 10
Q ss_pred --------hC------CCcc-hhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEE
Q 018243 234 --------LG------GGMR-QVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIV 292 (359)
Q Consensus 234 --------~~------~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~ 292 (359)
++ .... .+....+++..+++ ...++..++..++++++.+.|+++ |+++..++. .+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 318 (393)
T 2huf_A 240 DMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVT 318 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEE
T ss_pred chHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEE
Confidence 11 0001 12222222222332 224446778888999999999998 887643321 23477
Q ss_pred EEEeccchHHHHHHHHHHHHh-cCceeccC----CCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 293 YFEITEDSKLYAACLLKKLEE-HGVLVMPE----SSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~----~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
++.++. +.+..++.++|.+ +||.+.++ ...++|+++ ++..+++++++++++|++++++++.
T Consensus 319 ~~~~~~--~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 319 TIKVPQ--GVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp EEECCT--TCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcCC--CCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 788753 2467789999964 69999775 357899999 4345789999999999999988754
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=247.40 Aligned_cols=328 Identities=15% Similarity=0.162 Sum_probs=236.8
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccC-C-ChHHHHHHHHHHHHhCCC----CeEEcCCchHHHHHHHHHhhhhc
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLM-H-DPTAFRLETEMAKVMGKE----AGLFVPSGTMGNLISVLVHCETR 77 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~l~~~~~~~ 77 (359)
+.++|..+ +..++|++.+++.+.. + ..+. . .+...++++.+++++|.+ ..++++||++|+..++.+++ ++
T Consensus 4 ~~~~~~~g-p~~~~~~v~~a~~~~~-~-~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~ 79 (366)
T 1m32_A 4 NYLLLTPG-PLTTSRTVKEAMLFDS-C-TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GP 79 (366)
T ss_dssp -CEECSSS-SCCCCHHHHHTTCCCC-C-TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CT
T ss_pred ccccccCC-CcCCCHHHHHHHhhhh-c-CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc-CC
Confidence 36888888 4456799999998853 2 2221 1 266789999999999953 25788899999999999987 58
Q ss_pred CCeEEecC-CCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 78 GSEVILGD-NSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 78 g~~vl~~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
|++|++.+ ++|.+.+. ..+...|.+++.++.+.++.+|+++|++.+++. .++++|++.+ ++||||.++|
T Consensus 80 gd~vi~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~~v~~~~-~~nptG~~~~- 149 (366)
T 1m32_A 80 QDKVLIVSNGAYGARMV--EMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD------PTISHIAMVH-SETTTGMLNP- 149 (366)
T ss_dssp TCCEEEEESSHHHHHHH--HHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC------TTCCEEEEES-EETTTTEECC-
T ss_pred CCeEEEEeCCCccHHHH--HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC------CCeEEEEEec-ccCCcceecC-
Confidence 88887665 66655443 336677889999988778889999999999831 2578888755 5569999998
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH-----
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL----- 230 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~----- 230 (359)
+++|.++|++||+++|+|++|+++... ..... .+.|+++.|+||+++++.| |++++++++.+.++..
T Consensus 150 --l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 1m32_A 150 --IDEVGALAHRYGKTYIVDAMSSFGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222 (366)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTTTTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCST
T ss_pred --HHHHHHHHHHcCCEEEEECCccccCcC---ccccc--cCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcc
Confidence 789999999999999999998765432 12222 2578999999999866777 9999998877654321
Q ss_pred -------H---HhhCC-CcchhHHHHHHHHHHHH---Hh--HHHHhhhHHHHHHHHHHHHhcCCCceEecCC--ccceEE
Q 018243 231 -------R---KTLGG-GMRQVGVLCAAALVALQ---EN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--VETNIV 292 (359)
Q Consensus 231 -------~---~~~~~-~~~~~~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~~~~~~ 292 (359)
. ...+. ....+....+++..+++ .. .++.+++..++++++.+.|+++ ++++..++ ..+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~ 301 (366)
T 1m32_A 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIIT 301 (366)
T ss_dssp TCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEE
T ss_pred ccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEE
Confidence 0 00011 11223333333334443 22 3446778889999999999998 88764331 234578
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++.++...+.+..++.+.|.++||.+.++ +..++|++++..++++++++++++|+++++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 302 AFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred EEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 88886300246788999998889999776 45789999987889999999999999887653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=250.47 Aligned_cols=327 Identities=16% Similarity=0.105 Sum_probs=239.7
Q ss_pred cccccccCCCCCC-hHHHHHHHHHcCCCCC--CccCCChHHHHHHHHHHHHhC------C---CCeEEcCCchHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-PTEAMRAAMASAEVDD--DVLMHDPTAFRLETEMAKVMG------K---EAGLFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~------~---~~~~~~~~gt~a~~~~l 70 (359)
+..|||..+.+.. ++|.+.+++.+..... ..|+...+..++++.++++++ . +..++++||++++..++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~ 102 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSI 102 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHH
Confidence 4578999988764 4588999888765432 245555567899999999886 2 34577777889999999
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-----------CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-----------QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
..++ ++|++|+++.|+|..... .+...|.+++.++.+ .++.+|++++++.++ +++++
T Consensus 103 ~~~~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~--------~~~~~ 170 (410)
T 3e2y_A 103 QGLV-DPGDEVIIMVPFYDCYEP---MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS--------SKTKA 170 (410)
T ss_dssp HHHC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC--------TTEEE
T ss_pred HHhc-CCCCEEEEeCCCchhhHH---HHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC--------CCceE
Confidence 9887 599999999999877553 367778888888654 345689999999987 68999
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc--CccEEEEeccccCCCce-e-
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ--AADSASVCLSKGLGAPV-G- 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~--~~d~~~~s~~K~~g~~~-g- 214 (359)
|++++ ++||||.+++.+++++|+++|++||+++|+|++|..+.+... ..+...+.. +..+++.|+||.+|.++ +
T Consensus 171 v~~~~-p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~ 249 (410)
T 3e2y_A 171 IILNT-PHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL 249 (410)
T ss_dssp EEEES-SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC
T ss_pred EEEeC-CCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE
Confidence 99965 566999999999999999999999999999999865433211 112333321 22355669999998543 2
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----------HhHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ----------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
|++++++++++.++........+. +...+.++..+++ .+.++.++++.++++++.+.|+++ |+.+..
T Consensus 250 G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 326 (410)
T 3e2y_A 250 GWSIGPAHLIKHLQTVQQNSFYTC--ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIV 326 (410)
T ss_dssp EEEECCHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEB
T ss_pred EEEEECHHHHHHHHHHHHhhccCC--ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC
Confidence 889999999998876655444444 3344444444443 345556777888999999999998 888754
Q ss_pred CCccceEEEEEeccch-HH--------HHHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHHHHHHH
Q 018243 285 DAVETNIVYFEITEDS-KL--------YAACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISANDVHYTL 343 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~--------~~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i~~~~ 343 (359)
+..+.++|+.+.... +. +..++.++| .++||.+.+++ .+++|++++ .+++++++++
T Consensus 327 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~l~~~l 403 (410)
T 3e2y_A 327 -PDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFI--KKDSTLDAAE 403 (410)
T ss_dssp -CSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECC--CCHHHHHHHH
T ss_pred -CCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEc--CCHHHHHHHH
Confidence 468888998876410 01 234677766 78899997653 367999985 5999999999
Q ss_pred HHHHH
Q 018243 344 SCFQK 348 (359)
Q Consensus 344 ~~l~~ 348 (359)
++|++
T Consensus 404 ~~l~~ 408 (410)
T 3e2y_A 404 EIFRA 408 (410)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=251.94 Aligned_cols=329 Identities=16% Similarity=0.197 Sum_probs=235.2
Q ss_pred cccccccC-CCCCChHHHHHHHHHcCCCCC----------CccCCChHHHHHHHH-HHHHhCCCCeEEcCCchHHHHHHH
Q 018243 3 TRTVDLRS-DTVTKPTEAMRAAMASAEVDD----------DVLMHDPTAFRLETE-MAKVMGKEAGLFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~-~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~l~~~-la~~~~~~~~~~~~~gt~a~~~~l 70 (359)
+.+++|.. .....+++.+.+++.+..... ..+...+...++++. +++++|.+..++++||++|+..++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~ 86 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVM 86 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH
Confidence 34566666 334555688999998765432 123356778999999 999999983355566689999999
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeee--cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK--NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ ++|++|++++++|.+... . +...|++++.++ .++++.+|+++|++.+++.... +++++|++++ ++|
T Consensus 87 ~~~~-~~gd~vl~~~~~~~~~~~-~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~---~~~~~v~~~~-~~n 158 (371)
T 2e7j_A 87 HSLA-KKDAWVVMDENCHYSSYV-A--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR---GEVVLALITY-PDG 158 (371)
T ss_dssp HHHC-CTTCEEEEETTCCHHHHH-H--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT---SCEEEEEEES-SCT
T ss_pred HHHh-CCCCEEEEccCcchHHHH-H--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc---CCeEEEEEEC-CCC
Confidence 9987 599999999999988775 2 677898999998 7777889999999999732110 3678888855 456
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH-
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK- 226 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~- 226 (359)
|||.+++ +++|.++|++||+++|+|++|+.+... .+...+ +.|+++.|+||+++++.+ |+++.++++++.
T Consensus 159 ptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~---~~~~~~--~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~ 230 (371)
T 2e7j_A 159 NYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP---VSLKEI--GADFIVGSGHKSMAASGPIGVMGMKEEWAEIV 230 (371)
T ss_dssp TTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC---CCHHHH--TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTT
T ss_pred CCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC---CChhhc--CCCEEEecCCcCCCCCCCcEEEEEechhhhhh
Confidence 9999998 699999999999999999998765432 223333 678999999999877666 889988887665
Q ss_pred HHHHHHhhCC-----CcchhHHHHHHHHHHHHHhHHHHhhhH--HHHHHHHHHHHhcCCCceEecCCc-cceEEEEEecc
Q 018243 227 ARRLRKTLGG-----GMRQVGVLCAAALVALQENVLVMLDGD--HKKAKLLAEGLNQLKGLRVDVDAV-ETNIVYFEITE 298 (359)
Q Consensus 227 ~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~~~ 298 (359)
++........ ....+....+++..+++.......++. .++++++.+.|+++ ++++..+.. .++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~- 308 (371)
T 2e7j_A 231 LRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE- 308 (371)
T ss_dssp TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-
T ss_pred ccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-
Confidence 5433221111 111222333333344433222366677 88999999999998 888754321 4678888875
Q ss_pred chHHHHHHHHHHHHhcCceeccC-------C--CcEEE-EEeCCC-CCHHHHHHHHHHHHHHHHHH
Q 018243 299 DSKLYAACLLKKLEEHGVLVMPE-------S--STRVR-IVVHHQ-ISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 299 ~~~~~~~~~~~~l~~~gi~~~~~-------~--~~~lR-i~~~~~-~~~~~i~~~~~~l~~~~~~~ 353 (359)
+..++.+.|.++||.+.+. + ..++| ++++.. ++++++++++++|+++++++
T Consensus 309 ----~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 309 ----VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp ----HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 4668889998999998651 1 56799 999766 89999999999999988764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=243.47 Aligned_cols=313 Identities=20% Similarity=0.174 Sum_probs=228.8
Q ss_pred HHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh-hhhcCCeEEecCCCcceeeccc
Q 018243 18 EAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH-CETRGSEVILGDNSHIHIYENG 95 (359)
Q Consensus 18 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~-~~~~g~~vl~~~~~~~~~~~~~ 95 (359)
+++.+++.+.... ...|...+...++++.+++++|.+..++++||++|+..++.++ . ++|++|+++.++|.+...
T Consensus 17 ~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~-~~gd~Vi~~~~~~~~~~~-- 93 (388)
T 1b9h_A 17 DAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGV-GPGTEVIVPAFTFISSSQ-- 93 (388)
T ss_dssp HHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCTHHHH--
T ss_pred HHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCccHHHHH--
Confidence 6677777664432 2345667889999999999999988899999999999999998 5 589999999999988765
Q ss_pred cccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEE
Q 018243 96 GISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 96 ~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li 174 (359)
.+...|++++.++.+. ++.+|+++|++.++ +++++|+ ++||||.+.+ +++|.++|++||+++|
T Consensus 94 -~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~--------~~~~~v~----~~n~tG~~~~---l~~i~~la~~~~~~li 157 (388)
T 1b9h_A 94 -AAQRLGAVTVPVDVDAATYNLDPEAVAAAVT--------PRTKVIM----PVHMAGLMAD---MDALAKISADTGVPLL 157 (388)
T ss_dssp -HHHHTTCEEEEECBCTTTCCBCHHHHHHHCC--------TTEEEEC----CBCGGGCCCC---HHHHHHHHHHHTCCBC
T ss_pred -HHHHcCCEEEEEecCCCcCCCCHHHHHHhcC--------cCceEEE----EeCCccCcCC---HHHHHHHHHHcCCEEE
Confidence 3677888999998765 47899999999998 6788776 4558999866 8999999999999999
Q ss_pred EecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHH-H--HHHHHHHHHhh-------------CCCc
Q 018243 175 IDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE-F--IKKARRLRKTL-------------GGGM 238 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~-~--~~~~~~~~~~~-------------~~~~ 238 (359)
+|++|+.|... .+.....+. ..++.++|.+|+++++.||+++.+++ + .+.++...... +.+.
T Consensus 158 ~D~a~~~g~~~-~~~~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 235 (388)
T 1b9h_A 158 QDAAHAHGARW-QGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNM 235 (388)
T ss_dssp EECTTCTTCEE-TTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBC
T ss_pred EecchhcCCcc-CCeeccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccC
Confidence 99998765432 233333321 23344445568886666788887765 5 45554332210 1222
Q ss_pred chhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-----CccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 239 RQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-----AVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
..+...+++....++. +++..+++.++++++.+.|+++|++.+..+ +..++++++.++...+.+.+++.+.|.+
T Consensus 236 ~~~~~~~a~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 314 (388)
T 1b9h_A 236 RLNEFSASVLRAQLAR-LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVE 314 (388)
T ss_dssp BCBHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHH
Confidence 2344444444444443 333677788889999999999888887532 2346788998875222467889999988
Q ss_pred cCceeccCC---------------------------------CcEEEEEeCCCC-CHHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMPES---------------------------------STRVRIVVHHQI-SANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 314 ~gi~~~~~~---------------------------------~~~lRi~~~~~~-~~~~i~~~~~~l~~~~~~ 352 (359)
+||.+.++. ...+|++++..+ +++|++++++.|++++++
T Consensus 315 ~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 315 AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999885431 125999999899 999999999999988764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=246.99 Aligned_cols=320 Identities=13% Similarity=0.118 Sum_probs=233.9
Q ss_pred CCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe--E-EcCCchHHHHHHHHHhhhhcCCeEEecCCCcc
Q 018243 13 VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG--L-FVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89 (359)
Q Consensus 13 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~-~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~ 89 (359)
+..+++++.+++.+.......+...+...++++.+++++|.+.. + +++||++++..++.++. ++||+|+++.++|+
T Consensus 19 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~ 97 (416)
T 3isl_A 19 PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRF 97 (416)
T ss_dssp SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHH
T ss_pred CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcc
Confidence 34445889888887433322222345678999999999998764 3 66788899999999887 59999999999988
Q ss_pred e-eeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 90 H-IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 90 ~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
+ .+. ..++..|.+++.++.+.++.+|+++|++.+++ +++++|+++++ +||||.+.+ +++|.++|++
T Consensus 98 ~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~---l~~i~~l~~~ 164 (416)
T 3isl_A 98 GYLLT--EIAERYGANVHMLECEWGTVFDPEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP---LKAIGEACRT 164 (416)
T ss_dssp HHHHH--HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC---CHHHHHHHHH
T ss_pred cHHHH--HHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC---HHHHHHHHHH
Confidence 7 232 34677899999999888889999999999983 47889999665 559999988 8999999999
Q ss_pred cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH----------------
Q 018243 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR---------------- 231 (359)
Q Consensus 169 ~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~---------------- 231 (359)
||+++|+|++|+++... ..... .++|+++.|+||+++++.| |+++.++++.+.+....
T Consensus 165 ~~~~li~D~a~~~~~~~---~~~~~--~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~ 239 (416)
T 3isl_A 165 EDALFIVDAVATIGGCE---VKVDE--WKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALS 239 (416)
T ss_dssp TTCEEEEECTTTTTTSC---CCTTT--TTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----------------
T ss_pred cCCEEEEECCccccCCC---cchhh--cCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhcc
Confidence 99999999998765442 11222 2688999999998766666 88999999888775321
Q ss_pred -------------------HhhCCCc-chhHHHHHHHHHHH---HHh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCc
Q 018243 232 -------------------KTLGGGM-RQVGVLCAAALVAL---QEN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV 287 (359)
Q Consensus 232 -------------------~~~~~~~-~~~~~~~~~~~~~l---~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~ 287 (359)
....... ..+.....+...++ ... .++..++..++++++.+.|++. ++++..++.
T Consensus 240 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (416)
T 3isl_A 240 GNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDS 318 (416)
T ss_dssp -CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGG
T ss_pred CCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcc
Confidence 0000001 11222222223333 222 4557778889999999999997 888753321
Q ss_pred --cceEEEEEeccchHHHHHHHHHHHHhc-CceeccC----CCcEEEEEeCCCCCHHH-HHHHHHHHHHHHHHHH
Q 018243 288 --ETNIVYFEITEDSKLYAACLLKKLEEH-GVLVMPE----SSTRVRIVVHHQISAND-VHYTLSCFQKIYAGVC 354 (359)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~~~~~----~~~~lRi~~~~~~~~~~-i~~~~~~l~~~~~~~~ 354 (359)
.+.++++.++. +.+..++.++|.++ ||.+.++ ..+++|++++...++++ +++++++|+++++++.
T Consensus 319 ~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 319 CKMPVVTCVEIPG--GIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp GBCTTEEEEECCT--TCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEeCCC--CCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 25677888753 24678999999665 9999764 45789999966677777 9999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=238.80 Aligned_cols=317 Identities=15% Similarity=0.100 Sum_probs=226.7
Q ss_pred CCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEE-cCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 13 VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLF-VPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 13 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~-~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
+..++|++.+++.+....+......+...++++.+++++|.+. .++ ++||++++..++.+++ ++||+|+++.+.|
T Consensus 27 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-~~gd~vi~~~~~~ 105 (376)
T 3f0h_A 27 PVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-TKKDKVLVIDGGS 105 (376)
T ss_dssp SCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-CTTCCEEEEESSH
T ss_pred CCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-CCCCeEEEEeCCh
Confidence 3445689999998865333222223556788999999999873 344 5677999999999887 5999999999876
Q ss_pred ceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 89 IHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
++... ...+...|.+++.++.+.++.+|++++++.++ +++++|++++ ++||||.++| +++|.++|++
T Consensus 106 ~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~--------~~~~~v~~~~-~~nptG~~~~---l~~i~~l~~~ 172 (376)
T 3f0h_A 106 FGHRF-VQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN--------QNFTGLLVNV-DETSTAVLYD---TMMIGEFCKK 172 (376)
T ss_dssp HHHHH-HHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT--------SCCCEEEEES-EETTTTEECC---HHHHHHHHHH
T ss_pred hhHHH-HHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc--------cCceEEEEec-ccCCcceecC---HHHHHHHHHH
Confidence 66432 12356678899999888888899999998776 7889999855 5569999998 8999999999
Q ss_pred cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh--------------
Q 018243 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT-------------- 233 (359)
Q Consensus 169 ~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~-------------- 233 (359)
||+++|+|++|+++... ...... ++|+++.|+||+++++.| |+++.++++.+.+......
T Consensus 173 ~~~~li~D~~~~~~~~~---~~~~~~--~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (376)
T 3f0h_A 173 NNMFFVCDCVSAFLADP---FNMNEC--GADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQE 247 (376)
T ss_dssp TTCEEEEECTTTTTTSC---CCHHHH--TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHT
T ss_pred cCCEEEEEcCccccCcc---cccccc--CccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcc
Confidence 99999999998665432 122222 578999999999986556 8888999988876531100
Q ss_pred hCC-CcchhHHHHHHHHHH---HHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 234 LGG-GMRQVGVLCAAALVA---LQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 234 ~~~-~~~~~~~~~~~~~~~---l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
.+. ....+....++...+ +.. ..+...++..++++++.+.|+++ ++++..+.....++.+.... .+..++
T Consensus 248 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~l 323 (376)
T 3f0h_A 248 RGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTT---ANAYDI 323 (376)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESS---SCHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCC---CCHHHH
Confidence 011 111122111222223 332 24557777888899999999988 77764332222233333322 467899
Q ss_pred HHHHHhc-CceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEH-GVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 308 ~~~l~~~-gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+.|.++ ||.+.++ ...++|++++..++++++++++++|++++++
T Consensus 324 ~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 324 FLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999776 9999765 3568999998889999999999999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=246.80 Aligned_cols=329 Identities=14% Similarity=0.179 Sum_probs=237.2
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCC--CCCc------c----CCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEV--DDDV------L----MHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLI 68 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~--~~~~------~----~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~ 68 (359)
.+++.|.......++|.+.+++.+... .... + ...+...++++.++++++.+ ..++++||++|+..
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~ 100 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 100 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHH
Confidence 455666666666777999999998765 2111 1 11245588999999999987 56888899999999
Q ss_pred HHHHhhh---hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 69 SVLVHCE---TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 69 ~l~~~~~---~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
++.++.. ++|++|+++.++|.+...........|++++.++.+.++.+|+++|++.++ +++++|+++++
T Consensus 101 a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~~ 172 (423)
T 3lvm_A 101 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR--------DDTILVSIMHV 172 (423)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC--------TTEEEEECCSB
T ss_pred HHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC--------CCcEEEEEeCC
Confidence 9988772 379999999999988664111125568899999888889999999999998 68899998554
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHH
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIK 225 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~ 225 (359)
+||||.+++ +++|.++|++||++||+|++|+.+... ..... .+.|+++.|+||.+|++..|+++.+++..+
T Consensus 173 -~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~---~~~~~--~~~di~~~s~sK~~g~~g~G~~~~~~~~~~ 243 (423)
T 3lvm_A 173 -NNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP---IDLSQ--LKVDLMSFSGHKIYGPKGIGALYVRRKPRV 243 (423)
T ss_dssp -CTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCTTT--SCCSEEEEESTTTTSCSSCEEEEECBTTBC
T ss_pred -CCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC---cChhh--cCCCEEEechHHhcCCCCeEEEEEeccccC
Confidence 569999998 789999999999999999998654331 11222 267899999999777433377887766555
Q ss_pred HHHHHHH-------hhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEE
Q 018243 226 KARRLRK-------TLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVY 293 (359)
Q Consensus 226 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~ 293 (359)
.+..... ....+. +....++...++ +...++..++..++++++.+.|+++|++++..++. ...+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 321 (423)
T 3lvm_A 244 RIEAQMHGGGHERGMRSGTL--PVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILN 321 (423)
T ss_dssp CCCCSSCSSCTTTTTCCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEE
T ss_pred CCCccccCCcccccccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE
Confidence 4332211 111111 222222222333 33345577788899999999999998998754322 135666
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.+.. .+..++.+.|.+ |.+.++. ..++|++++..++++++++++++|++++
T Consensus 322 ~~~~~---~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~ 396 (423)
T 3lvm_A 322 VSFNY---VEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSI 396 (423)
T ss_dssp EEETT---SCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCC---CCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 77654 367788888866 6665542 3789999988899999999999999999
Q ss_pred HHHHh
Q 018243 351 AGVCE 355 (359)
Q Consensus 351 ~~~~~ 355 (359)
+++++
T Consensus 397 ~~~~~ 401 (423)
T 3lvm_A 397 GRLRD 401 (423)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 88764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=241.44 Aligned_cols=314 Identities=18% Similarity=0.155 Sum_probs=228.8
Q ss_pred CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC---C-eEEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 12 TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE---A-GLFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 12 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~-~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
.+..++|.+.+++.+....+..+...+...++++.+++++|.+ . .++++||++|+..++..+. + ++|++++++
T Consensus 7 gp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~vl~~~~~ 83 (353)
T 2yrr_A 7 GPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-R--GPVLVLVNG 83 (353)
T ss_dssp SSCCCCHHHHGGGGSCCCCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-C--CCEEEEECS
T ss_pred CCCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-C--CcEEEEcCC
Confidence 3445568999999886644222122345789999999999985 3 3566778888888888776 3 789999998
Q ss_pred ccee-eccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 88 HIHI-YENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 88 ~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
|++. +. ..+...|.+++.++.+.++.+|+++|++.++ + ++++|+++ .++||||.+++ +++|.++
T Consensus 84 ~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~~v~~~-~~~nptG~~~~---~~~i~~l 149 (353)
T 2yrr_A 84 AFSQRVA--EMAALHGLDPEVLDFPPGEPVDPEAVARALK--------RRRYRMVALV-HGETSTGVLNP---AEAIGAL 149 (353)
T ss_dssp HHHHHHH--HHHHHTTCCEEEEECCTTSCCCHHHHHHHHH--------HSCCSEEEEE-SEETTTTEECC---HHHHHHH
T ss_pred CchHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHHHH--------hCCCCEEEEE-ccCCCcceecC---HHHHHHH
Confidence 8874 22 2356778899999888888899999999998 4 78888885 45569999988 7899999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH----------H---H
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR----------L---R 231 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~----------~---~ 231 (359)
|++||+++|+|++|+++.. ..+...+ +.|++++|++|+++++.| |++++++++++.++. . .
T Consensus 150 ~~~~~~~li~D~a~~~~~~---~~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (353)
T 2yrr_A 150 AKEAGALFFLDAVTTLGML---PFSMRAM--GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHW 224 (353)
T ss_dssp HHHHTCEEEEECTTTTTTS---CCCHHHH--TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHH
T ss_pred HHHcCCeEEEEcCcccccc---ccccccc--CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhh
Confidence 9999999999999865433 2223333 578999999998876666 899999988876530 0 0
Q ss_pred --HhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc-cceEEEEEeccchHHHH
Q 018243 232 --KTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV-ETNIVYFEITEDSKLYA 304 (359)
Q Consensus 232 --~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 304 (359)
....++. +.....++..+++ ...++.++++.++++++.+.|+++ |+++..++. .+.++++.++. +.+.
T Consensus 225 ~~~~~~~~~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~ 299 (353)
T 2yrr_A 225 ERGGYHHTT--PVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPE--GVDA 299 (353)
T ss_dssp TTCCCSSCC--CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCT--TCCH
T ss_pred hcCCCCCCC--CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCC--CCCH
Confidence 1111222 2222233233332 224456778889999999999998 888754321 45556788753 2467
Q ss_pred HHHHHHHHhcCceeccCC----CcEEEEEeCCCCCHHHHH-HHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPES----STRVRIVVHHQISANDVH-YTLSCFQKIYAG 352 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~-~~~~~l~~~~~~ 352 (359)
.++.+.|.++||.+.++. ..++|++++...++++++ +++++|+++++.
T Consensus 300 ~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 300 DRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 889999988899997653 568999997788999999 999999988754
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=248.28 Aligned_cols=331 Identities=12% Similarity=0.033 Sum_probs=234.3
Q ss_pred cccccCCCCC---ChH-HHHHHHHHcCC---CC--CCccCCChHHHHHHHHHHHHhCCCC-eEEc-CCchHHH--HHHHH
Q 018243 5 TVDLRSDTVT---KPT-EAMRAAMASAE---VD--DDVLMHDPTAFRLETEMAKVMGKEA-GLFV-PSGTMGN--LISVL 71 (359)
Q Consensus 5 ~id~~~~~~~---~~~-~~~~~a~~~~~---~~--~~~~~~~~~~~~l~~~la~~~~~~~-~~~~-~~gt~a~--~~~l~ 71 (359)
.|||..+.+. .|. +.+.+++.+.. .. ...|+...+..++++.++++++.+. .+++ +|+++++ ..++.
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 6899988775 444 47777776542 11 2357666778999999999998863 3544 5555565 33444
Q ss_pred Hhhhhc------------CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 72 VHCETR------------GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 72 ~~~~~~------------g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
.+. .+ +++|+++.|+|..... .++..|.+++.++.++++ +|+++|++.+++ .++++
T Consensus 114 ~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~-------~~~~~ 181 (422)
T 3d6k_A 114 SYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFT---ITEHFGFEMINVPMTDEG-PDMGVVRELVKD-------PQVKG 181 (422)
T ss_dssp HHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHH---HHHHHTCEEEEEEEETTE-ECHHHHHHHHTS-------TTEEE
T ss_pred Hhc-CcccccccccccCCCCEEEEeCCccHHHHH---HHHHcCCEEEecCCCCCC-CCHHHHHHHHhc-------CCCeE
Confidence 444 34 3479999999877553 367778899999876655 899999999983 37889
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHH-HcCcEEEEecccccchhhhcC---chhHhh-----hcCccEEEEeccccCC
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAK-KHGLKLHIDGARIFNAAVALG---VPVRRL-----VQAADSASVCLSKGLG 210 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~-~~~~~li~D~a~~~~~~~~~~---~~~~~~-----~~~~d~~~~s~~K~~g 210 (359)
|++.+.++||||.+++.+++++|.++|+ +||++||+||+|..+.+...+ .+...+ ..+..+++.|+||+ +
T Consensus 182 v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~ 260 (422)
T 3d6k_A 182 MWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-T 260 (422)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-S
T ss_pred EEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-c
Confidence 8866778889999999999999999999 999999999998632232222 133222 11234556699998 4
Q ss_pred Cce-e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH------HhHHHHhhhHHHHHHHHHHHHhc----CC
Q 018243 211 APV-G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ------ENVLVMLDGDHKKAKLLAEGLNQ----LK 278 (359)
Q Consensus 211 ~~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~l~~~l~~----~~ 278 (359)
+|+ . ||+++++++++.+.......+.+. +...+.++...++ .+.++.++.+.++++.+.+.|++ .+
T Consensus 261 ~~GlriG~~~~~~~l~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 338 (422)
T 3d6k_A 261 HAGSGVSFFASSKENIEWYASHANVRGIGP--NKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYG 338 (422)
T ss_dssp CTTSSCEEEECCHHHHHHHHHHHHHHCSCC--CHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CcccceEEEEeCHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 443 2 899999999999887766655444 3344444444443 23333455566667766666654 32
Q ss_pred CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC----------CcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 279 GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES----------STRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 279 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~----------~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
++.+. .+..++++|+.++.. +...+.+.|.++||.+.+++ ..++||+++. .+++++++++++|++
T Consensus 339 ~~~~~-~p~~g~~~~~~~~~~---~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 339 VAKWT-SPTGGYFISVDVVPG---TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFAT 413 (422)
T ss_dssp CEEEC-CCSBSSCEEEEESTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHH
T ss_pred ceEEe-CCCcceEEEEECCCC---CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence 35653 345788999999752 46678888899999998732 4689999975 899999999999999
Q ss_pred HHHHHHh
Q 018243 349 IYAGVCE 355 (359)
Q Consensus 349 ~~~~~~~ 355 (359)
+++++..
T Consensus 414 ~l~~~~~ 420 (422)
T 3d6k_A 414 CVLMAAL 420 (422)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=249.42 Aligned_cols=332 Identities=15% Similarity=0.082 Sum_probs=235.9
Q ss_pred cccccccCCCCCCh-HHHHHHHHHcCCCC-CCccCC--ChHHHHHHHHHHHHhCCC----CeEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSDTVTKP-TEAMRAAMASAEVD-DDVLMH--DPTAFRLETEMAKVMGKE----AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~~~~~~-~~~~~~a~~~~~~~-~~~~~~--~~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~l~~~~ 74 (359)
..+|||..+....+ +|.+.+++.+.... ...|+. .+....+.+.+++.++.+ ..++++||++|+..++..+.
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~ 140 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS 140 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence 36789988766544 48888888775432 223433 223345555555556632 24677777789999999987
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeeecC---CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN---QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++|++|+++.|+|.+... .+...|.+++.++.+ .++.+|+++|++.+++ +++++|+++++ +||||
T Consensus 141 -~~gd~Vi~~~~~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~-------~~~~~vil~~p-~nptG 208 (421)
T 3l8a_A 141 -EKGDAVLINSPVYYPFAR---TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID-------NNVKIYLLCSP-HNPGG 208 (421)
T ss_dssp -CTEEEEEEEESCCHHHHH---HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH-------TTEEEEEEESS-BTTTT
T ss_pred -CCCCEEEECCCCcHHHHH---HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc-------cCCeEEEECCC-CCCCC
Confidence 589999999999888654 366678888888754 3346899999999984 57899999665 56999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhh-cCchhHhhhc---CccEEEEeccccCCCce-e-eEEecC-HHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA-LGVPVRRLVQ---AADSASVCLSKGLGAPV-G-SVIVGS-KEFI 224 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~~~~---~~d~~~~s~~K~~g~~~-g-g~~~~~-~~~~ 224 (359)
.+++.+++++|+++|++||+++|+||+|....... ...+...+.. +..+++.|+||++|.++ . |+++.+ +++.
T Consensus 209 ~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~ 288 (421)
T 3l8a_A 209 RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLR 288 (421)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHH
Confidence 99999999999999999999999999986543321 1122222211 23366679999997433 2 777776 8998
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchH
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
+.+.......+.. ..++..++++..+++ .+.++.+++..++++++.+.|+++|++.+.. +..+.+.|+.++. .+
T Consensus 289 ~~~~~~~~~~~~~-~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~-~~~~~~~~v~~~~-~~ 365 (421)
T 3l8a_A 289 RKFQYRQLANNQH-EVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVME-PEGTYLVWLDFSA-YA 365 (421)
T ss_dssp HHHHHHHHHTTCS-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC-CSBSSEEEEECGG-GT
T ss_pred HHHHHHHHhcccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC-CCeeEEEEEeccc-cC
Confidence 8887665443321 224444455555553 3455567778888999999998877888753 4466677788875 23
Q ss_pred HHHHHHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 302 ~~~~~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+..++.+.|. ++||.+.++ +..++|++++ .+++++++++++|+++++
T Consensus 366 ~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 366 IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 46678999995 679999764 3578999996 799999999999998875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=251.36 Aligned_cols=324 Identities=16% Similarity=0.135 Sum_probs=235.9
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC-----C---ccCC-ChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD-----D---VLMH-DPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~-----~---~~~~-~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
..++|..+....+++.+.+++.+..... . .|.. .+...++++.+++++|.+ ..++++||++|+..++..
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 95 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG 95 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhC
Confidence 4577777766555577888887643221 1 2222 366789999999999986 457888999999999998
Q ss_pred h-hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 73 H-CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 73 ~-~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
+ . ++|++|+++.++|.+..... ..++..|.+++.++.+ .++.+|+++|++.++ +++++|++++ ++|
T Consensus 96 ~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~-~~n 165 (390)
T 1elu_A 96 LDW-HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--------PKTRLVILSH-LLW 165 (390)
T ss_dssp SCC-CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC--------TTEEEEEEES-BCT
T ss_pred CCC-CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC--------CCceEEEEec-ccc
Confidence 8 5 58999999999988764300 1235568888888765 577889999999988 6789999855 555
Q ss_pred CCceecChhhHHHHHHHHH----HcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAK----KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~----~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~ 223 (359)
|||.+++ +++|.++|+ ++|+++|+|++|+++... ..... .+.|+++.|+||+++++.| |+++.++++
T Consensus 166 ptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---~~~~~--~~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 237 (390)
T 1elu_A 166 NTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LDFSR--LEVDYYAFTGHKWFAGPAGVGGLYIHGDC 237 (390)
T ss_dssp TTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CCTTT--SCCSEEEEESSSTTCCCTTCEEEEECTTT
T ss_pred CCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---CChhh--cCCCEEEccccccccCCCceEEEEECHHh
Confidence 9999998 899999999 999999999998765332 12212 2678999999997766667 888888887
Q ss_pred HHHHHHHH----------------------HhhCCCcchhHHHHHHH---HHHHHH--hHHHHhhhHHHHHHHHHHHHhc
Q 018243 224 IKKARRLR----------------------KTLGGGMRQVGVLCAAA---LVALQE--NVLVMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 224 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~~~~~~~~~~~l~~~l~~ 276 (359)
.+.++... ....++. +....+++ +..++. +.++..++..++++++.+.|++
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 315 (390)
T 1elu_A 238 LGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS--AYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315 (390)
T ss_dssp GGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCccccCCcccccccCcccccccchHhhCCCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 76653211 1111122 22222222 223322 2455777888999999999999
Q ss_pred CCCceEecC-CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVD-AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 277 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+||+++..+ +..++++++.++.. .+..++.++|.++||.+.++. .+++||+++...+++++++++++|+++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 316 LPHVHCLATSAPQAGLVSFTVDSP--LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp STTEEESCSSCCSSSEEEEEECSS--SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred cCCcEEecCccccccEEEEEcCCC--CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 889887543 34677777787531 367789999999999998874 679999998789999999999998753
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=242.56 Aligned_cols=309 Identities=13% Similarity=0.067 Sum_probs=220.5
Q ss_pred cCCChHHHHHHHHHHHHh----CCCC----------e-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecccccc
Q 018243 34 LMHDPTAFRLETEMAKVM----GKEA----------G-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIS 98 (359)
Q Consensus 34 ~~~~~~~~~l~~~la~~~----~~~~----------~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 98 (359)
|+...+..++++++++++ |.+. . ++++|+++++..++..++ ++||+|++++|+|..... .+
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~---~~ 149 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDEPAYSGTLQ---SL 149 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHH---HH
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHH---HH
Confidence 555566677777777764 6532 3 555666778888888887 599999999999887554 36
Q ss_pred ccCCccceeeecCCCCCCCHHHHHHHhcCCCCC----ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEE
Q 018243 99 TIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGE----IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 99 ~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li 174 (359)
+..|.+++.++.+.++ +|+++|++.+++.... ...+++++|++.+.++||||.+++.+++++|+++|++||++||
T Consensus 150 ~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li 228 (425)
T 2r2n_A 150 HPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLII 228 (425)
T ss_dssp GGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 7788899998776554 8999999999742100 0013578888867788899999999999999999999999999
Q ss_pred Eecccccchhhh-cCchhHhhhc-CccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHH
Q 018243 175 IDGARIFNAAVA-LGVPVRRLVQ-AADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALV 250 (359)
Q Consensus 175 ~D~a~~~~~~~~-~~~~~~~~~~-~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (359)
+||+|....+.. ...++..+.. +..+++.|+||+++ |+. ||+++++++++.+.........+. +...+.++..
T Consensus 229 ~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~--~~~~q~a~~~ 305 (425)
T 2r2n_A 229 EDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHP--STFNQLMISQ 305 (425)
T ss_dssp EECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSS--CHHHHHHHHH
T ss_pred EECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 999976433321 1123333321 22355669999998 442 889999999998877665544444 3334444444
Q ss_pred HHH--------HhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccchHHHHHH-HHHHHHhcCceecc
Q 018243 251 ALQ--------ENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDSKLYAAC-LLKKLEEHGVLVMP 320 (359)
Q Consensus 251 ~l~--------~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~~~~ 320 (359)
.++ .+.++.++++.++++++.+.|++ .|++.....+..++++|+.++.. .+..+ +.+.|.++||.+.|
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~~~l~~~gv~v~p 383 (425)
T 2r2n_A 306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI--NDVKELIEEKAVKMGVLMLP 383 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC--SCCHHHHHTHHHHTTEECEE
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC--CCHHHHHHHHHHHCCcEEec
Confidence 443 33444566777888999999987 57774223456888999999752 23444 57788899999976
Q ss_pred CC---------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 321 ES---------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 321 ~~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+. .+++|++++ ..+++++++++++|++++++.
T Consensus 384 g~~f~~~~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 384 GNAFYVDSSAPSPYLRASFS-SASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp GGGGSSSTTSCCCEEEEECS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHHHh
Confidence 42 468999997 369999999999999988753
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=246.32 Aligned_cols=323 Identities=19% Similarity=0.197 Sum_probs=238.7
Q ss_pred CccccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh-hhhcCC
Q 018243 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH-CETRGS 79 (359)
Q Consensus 1 ~~~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~-~~~~g~ 79 (359)
|.+.++||..+.+..+. +.+++.+..... .|...+...++++.++++++.+..++++||++|+..++..+ . ++|+
T Consensus 4 m~~~~~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~-~~gd 79 (374)
T 3uwc_A 4 MRVPYSYLERQFADIEP--YLNDLREFIKTA-DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNI-GAGD 79 (374)
T ss_dssp CCBCSCCHHHHTSSCHH--HHHHHHHHHHHT-CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTC-CTTC
T ss_pred CcceeeccccCCCCchH--HHHHHHHHHHcC-CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCC-CCCC
Confidence 34556888887776654 777766543222 46678899999999999999998899999999999999988 6 6999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|+++.++|.+... .+...|.+++.++.+.++.+|++++++.++ +++++|+ .+||||...+ +
T Consensus 80 ~v~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~----~~n~~G~~~~---~ 141 (374)
T 3uwc_A 80 EVITCANTFIASVG---AIVQAGATPVLVDSENGYVIDPEKIEAAIT--------DKTKAIM----PVHYTGNIAD---M 141 (374)
T ss_dssp EEEEESSSCHHHHH---HHHHTTCEEEEECBCTTSSBCGGGTGGGCC--------TTEEEEC----CBCGGGCCCC---H
T ss_pred EEEECCCccHHHHH---HHHHcCCEEEEEecCCCCCcCHHHHHHhCC--------CCceEEE----EeCCcCCcCC---H
Confidence 99999999988765 367789999999887788899999999988 6788777 3459999776 8
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc--ccCCC-ceeeEEec-CHHHHHHHHHHHHh--
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS--KGLGA-PVGSVIVG-SKEFIKKARRLRKT-- 233 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~-~~gg~~~~-~~~~~~~~~~~~~~-- 233 (359)
++|.++|++||+++|+|++|+.+... .+.. .....|++++|+| |++++ +.||+++. ++++.+.++.....
T Consensus 142 ~~i~~~~~~~~~~li~D~~~~~g~~~-~~~~---~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 217 (374)
T 3uwc_A 142 PALAKIAKKHNLHIVEDACQTILGRI-NDKF---VGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGL 217 (374)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEE-TTEE---TTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHHHHHcCCEEEEeCCCccCcee-CCee---ccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999999998765442 2222 2223688888866 99987 45676665 56777777655431
Q ss_pred --------hCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCC-ceEecCCccceE--EEEEeccchHH
Q 018243 234 --------LGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKG-LRVDVDAVETNI--VYFEITEDSKL 302 (359)
Q Consensus 234 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~~~~~~~~--~~~~~~~~~~~ 302 (359)
.+.+.......+++....++.. ++..++..++.+++.+.|+++++ +.+...+..... ..+.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 293 (374)
T 3uwc_A 218 INRDVCVEYGINCRMDTIQAVIANRLMNQL-ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK--- 293 (374)
T ss_dssp EETTEESSCCCBCBCCHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET---
T ss_pred cccCccccccccCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC---
Confidence 1223333445555544444433 43777888899999999999866 776322222222 22223221
Q ss_pred HHHHHHHHHHhcCceeccCC---------------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPES---------------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~~---------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+..++.+.|.++||.+.++. ...+|++++..++++|+++++++|++++++.
T Consensus 294 ~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 294 YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 57789999999999886654 1679999999999999999999999988653
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=243.36 Aligned_cols=318 Identities=17% Similarity=0.181 Sum_probs=233.6
Q ss_pred ccCCCCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 8 LRSDTVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
+.+..+..+++++.+++.+.... .|+. .+...++++.+++++|.+ ..++++||++|+..++..++ ++|++|+
T Consensus 37 l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~-~~gd~Vl 113 (393)
T 1vjo_A 37 LLGPGPSNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-EPGDVVL 113 (393)
T ss_dssp ECSSSCCCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEE
T ss_pred eccCCCCCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc-CCCCEEE
Confidence 44445566679999999886543 2332 245678888999999986 34677888899999999987 5999999
Q ss_pred ecCCCcce--eeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhH
Q 018243 83 LGDNSHIH--IYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 83 ~~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+++|+|.+ ... .++..|.+++.++.+.++.+|+++|++.++ + ++++|++++ ++||||.+.+ +
T Consensus 114 ~~~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~~v~~~~-~~nptG~~~~---l 178 (393)
T 1vjo_A 114 IGVAGYFGNRLVD---MAGRYGADVRTISKPWGEVFSLEELRTALE--------THRPAILALVH-AETSTGARQP---L 178 (393)
T ss_dssp EEESSHHHHHHHH---HHHHTTCEEEEEECCTTCCCCHHHHHHHHH--------HHCCSEEEEES-EETTTTEECC---C
T ss_pred EEcCChhHHHHHH---HHHHcCCceEEEecCCCCCCCHHHHHHHHh--------hCCceEEEEec-cCCCcceecc---H
Confidence 99999876 332 366788899999888788899999999998 5 788888855 5569999987 7
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH----HHh-
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL----RKT- 233 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~----~~~- 233 (359)
++|.++|+++|+++|+|++|+++.. ...... .+.|+++.|+||++++|.+ |++++++++++.++.. ...
T Consensus 179 ~~i~~l~~~~~~~li~Dea~~~g~~---~~~~~~--~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~ 253 (393)
T 1vjo_A 179 EGVGELCREFGTLLLVDTVTSLGGV---PIFLDA--WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWY 253 (393)
T ss_dssp TTHHHHHHHHTCEEEEECTTTTTTS---CCCTTT--TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCST
T ss_pred HHHHHHHHHcCCEEEEECCccccCc---CCcccc--cCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCcee
Confidence 8999999999999999999875432 222222 2678999999999988777 8999999888776321 000
Q ss_pred h------------CCCc-chhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceEEEE
Q 018243 234 L------------GGGM-RQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNIVYF 294 (359)
Q Consensus 234 ~------------~~~~-~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~~~~ 294 (359)
. .... ..+...++++..+++. ..++.++++.++++++.+.|+++ ++++..+.. ...++++
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 332 (393)
T 1vjo_A 254 LDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTV 332 (393)
T ss_dssp TCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEE
T ss_pred cCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEE
Confidence 0 0011 2233444444444533 24457778889999999999998 887753321 2456778
Q ss_pred EeccchHHHHHHHHHHHHhc-CceeccCC----CcEEEEEe-CCCCCHHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEH-GVLVMPES----STRVRIVV-HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~-gi~~~~~~----~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++. +.+..++.+.|.++ ||.+.++. ..++|+++ +...+++++++++++|+++++
T Consensus 333 ~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 333 CIPD--GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp ECCT--TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EcCC--CCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 7753 23677899999776 99997753 57899995 445677789999999998763
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=244.60 Aligned_cols=319 Identities=12% Similarity=0.106 Sum_probs=228.3
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC-----CccC----CChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD-----DVLM----HDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
.++|..+....+++.+.+++.+..... ..|. ..+...++++.+++++|.+ ..++++||++++..++.++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l 106 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEAS 106 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHT
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHH
Confidence 455555555566677877776643211 1232 2456789999999999986 3466777777877777776
Q ss_pred --hhhcCCeEEecCCCcceeeccccccc---cCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 74 --CETRGSEVILGDNSHIHIYENGGIST---IGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 74 --~~~~g~~vl~~~~~~~~~~~~~~~~~---~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
..++|++|+++.++|.+.+. .... ..|.+++.++.+ +++.+|+++|++.++ +++++|+++++ +
T Consensus 107 ~~~~~~gd~vi~~~~~~~~~~~--~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 107 SSRAGLGYEVIVSRLDDEANIA--PWLRAAHRYGAKVKWAEVDIETGELPTWQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp GGGGBTTCEEEEETTSCGGGTH--HHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCC--------TTEEEEEEESB-C
T ss_pred hhccCCCCEEEEcCCccHHHHH--HHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhC--------CCceEEEEeCC-c
Confidence 13589999999999988764 2122 268889989876 678899999999998 68999999655 5
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceee-EEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGS-VIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg-~~~~~~~~~~~ 226 (359)
||||.+++ +++|.++|+++|+++|+|++|+.+... .....+ +.|+++.|+||++|.. +| +++.++++.+.
T Consensus 176 nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~~~~--~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~ 246 (406)
T 3cai_A 176 GTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYRL---LDIRET--DADVVTVNAHAWGGPP-IGAMVFRDPSVMNS 246 (406)
T ss_dssp TTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTCC---CCHHHH--CCSEEEEEGGGGTSCS-CEEEEESCHHHHHT
T ss_pred CCccccCC---HHHHHHHHHHcCCEEEEEcccccCCCC---CCchhc--CCCEEEeehhhhcCCC-cCeEEEEehHHHhh
Confidence 59999988 789999999999999999998764332 222333 6899999999988754 56 99999988776
Q ss_pred HHHHHHh--------h-CCCcchhHHHHHHHHHHH---HH---------------hHHHHhhhHHHHHHHHHHHHhcCCC
Q 018243 227 ARRLRKT--------L-GGGMRQVGVLCAAALVAL---QE---------------NVLVMLDGDHKKAKLLAEGLNQLKG 279 (359)
Q Consensus 227 ~~~~~~~--------~-~~~~~~~~~~~~~~~~~l---~~---------------~~~~~~~~~~~~~~~l~~~l~~~~g 279 (359)
++..... + .++. +....+++..++ .. ..++..++..++++++.+.|+++|+
T Consensus 247 l~~~~~~~~~~~~~~~~~~t~--~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (406)
T 3cai_A 247 FGSVSTNPYATGPARLEIGVH--QFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPL 324 (406)
T ss_dssp SCCCCSCTTCCGGGGGCCSCC--CHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cCCcccCCCCCccccccCCCc--cHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5433211 1 1122 222222222222 22 2444667788899999999999888
Q ss_pred ceEecCC-ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-------------CcEEEEEeCCCCCHHHHHHHHHH
Q 018243 280 LRVDVDA-VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-------------STRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 280 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
+++..+. ..++++++.++. .+..++.+.|.++||.+.++. ..++|++++..++++++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~ 401 (406)
T 3cai_A 325 VMLIGRPEAQIPVVSFAVHK---VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRA 401 (406)
T ss_dssp EEECCCCSSBCSEEEEEETT---BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred eEEcCCccccCCEEEEEECC---cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHH
Confidence 8875332 235577888764 367789999988999997654 37899999888899999999999
Q ss_pred HHH
Q 018243 346 FQK 348 (359)
Q Consensus 346 l~~ 348 (359)
|++
T Consensus 402 l~~ 404 (406)
T 3cai_A 402 LAS 404 (406)
T ss_dssp HHT
T ss_pred HHH
Confidence 875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=244.18 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=231.6
Q ss_pred cccc-cccCCCCCChH---HHHHHHHHcCCCC-------C------CccCCChHHHHHHHHHHHHh------CC--CCeE
Q 018243 3 TRTV-DLRSDTVTKPT---EAMRAAMASAEVD-------D------DVLMHDPTAFRLETEMAKVM------GK--EAGL 57 (359)
Q Consensus 3 ~~~i-d~~~~~~~~~~---~~~~~a~~~~~~~-------~------~~~~~~~~~~~l~~~la~~~------~~--~~~~ 57 (359)
+.+| ||..+.+..+. +.+.+++.+...+ . ..|+..++..++++.+++++ +. +..+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 4578 99998777643 5667777654333 2 23666667899999999997 22 3457
Q ss_pred EcCCchHHHHHHHHHhhhhcCC--------------eEEec-CCCcceeeccc---cccccCCccceeeecCC-C----C
Q 018243 58 FVPSGTMGNLISVLVHCETRGS--------------EVILG-DNSHIHIYENG---GISTIGGVHPRTVKNNQ-D----G 114 (359)
Q Consensus 58 ~~~~gt~a~~~~l~~~~~~~g~--------------~vl~~-~~~~~~~~~~~---~~~~~~g~~~~~v~~~~-~----~ 114 (359)
+++||++|+..++..++ ++|+ +|+++ .|+|....... ......|..++.++.+. + +
T Consensus 111 ~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKY 189 (444)
T ss_dssp EESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEE
T ss_pred EecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCcccc
Confidence 88888899999998887 4777 78775 88876654310 02344566777776554 2 3
Q ss_pred CCCHHHHHHH---hcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh
Q 018243 115 TMDIDLIEAA---IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV 191 (359)
Q Consensus 115 ~~~~~~l~~~---l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 191 (359)
.+|+++|++. ++ +++++|+++++ +||||.+++.+++++|+++|++||+++|+|++|+...........
T Consensus 190 ~~d~~~l~~~l~~~~--------~~~~~v~i~~p-~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 260 (444)
T 3if2_A 190 RVDFEALENLPALKE--------GRIGAICCSRP-TNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDA 260 (444)
T ss_dssp ECCHHHHHTCHHHHT--------TCEEEEEEESS-CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC
T ss_pred CCCHHHHHHHHHhcC--------CCceEEEeCCC-CCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccc
Confidence 6899999988 45 68999999665 569999999999999999999999999999997532111000111
Q ss_pred HhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-----HhHHH-HhhhHH
Q 018243 192 RRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-----ENVLV-MLDGDH 264 (359)
Q Consensus 192 ~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~ 264 (359)
.....+.++++.|+||+++.+.+ ||++.++++.+.+.......+.+.+.... .++...++ ....+ ..+.+.
T Consensus 261 ~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~a~~~~l~~~~~~~~~~~~~~~~~~ 338 (444)
T 3if2_A 261 HLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGA--AIATPLVANDRIKQLSDNEIKPFYQ 338 (444)
T ss_dssp CCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred cccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHH--HHHHHHHHcCchhHHHHHHHHHHHH
Confidence 11112445677799997332233 88999999999988776655444433332 23322232 11221 344556
Q ss_pred HHHHHHHHHHhc-CC--CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC--------------cEEE
Q 018243 265 KKAKLLAEGLNQ-LK--GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--------------TRVR 327 (359)
Q Consensus 265 ~~~~~l~~~l~~-~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--------------~~lR 327 (359)
++++.+.+.|++ ++ ++.+. .+..+.++|+.++. .+.+..++.+.|.++||.+.++.. .++|
T Consensus 339 ~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iR 416 (444)
T 3if2_A 339 KQATLAVKLLKQALGDYPLMIH-KPEGAIFLWLWFKD-LPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIR 416 (444)
T ss_dssp HHHHHHHHHHHHHSSSSSEEEE-CCCBSSEEEEEETT-CSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEE
T ss_pred HHHHHHHHHHHHhcccCCceEe-cCCccEEEEEEcCC-CCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEE
Confidence 666777777665 44 34553 34578899999875 124788899999999999976532 4799
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 328 IVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 328 i~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
|+++. +++++++++++|.++++++..
T Consensus 417 is~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 417 MSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp EESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 99973 999999999999999988765
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=245.16 Aligned_cols=336 Identities=18% Similarity=0.239 Sum_probs=236.6
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
.++||.++... .+.+++.+++.. ....|...+...++++.++++++.+..++++||++|+..++.+++ ++|| +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~---~~~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~-~~gd--i 116 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM---GDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAI-KPGQ--Y 116 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT---CCCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC-CTTC--E
T ss_pred ceeeeccccCCccCCHHHHHHhhc---chhhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhC-CCCC--E
Confidence 35788776433 445888888874 334577788999999999999999888999999999999999887 5888 7
Q ss_pred ecCCCcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++.++|++.+. ..+...|.+++.++.+. ++.+|+++|++.+++.. ...+++|++++++|+|||.
T Consensus 117 ~~~~~~~~~~~--~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t----~~~~~~v~l~~p~n~ptG~ 190 (456)
T 2ez2_A 117 VAGNMYFTTTR--YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG----AENIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp EEESSCCHHHH--HHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC----GGGEEEEEEESSBTTTTSB
T ss_pred eccccccchhH--HHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc----ccceeEEEEeccCCCCCCc
Confidence 88888844443 23677888888886542 26789999999998210 0124888887666669999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccch--------hhhcCchhHh----hhcCccEEEEeccccCCCceeeEEec-
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNA--------AVALGVPVRR----LVQAADSASVCLSKGLGAPVGSVIVG- 219 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~--------~~~~~~~~~~----~~~~~d~~~~s~~K~~g~~~gg~~~~- 219 (359)
+++.+++++|+++|++||+++|+|++|.+|. ..+.+....+ .....|++++|++|+++.+.||++++
T Consensus 191 ~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~ 270 (456)
T 2ez2_A 191 PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMN 270 (456)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEES
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEEC
Confidence 9999999999999999999999999987641 2223333221 22356888889999877555788887
Q ss_pred CHHHHHHHHHHHHhh-C----CCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 220 SKEFIKKARRLRKTL-G----GGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 220 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
++++.+.++...... + .+.+... ..+++...++...+...++..++.+++.+.|++. |+++.. +..++++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-p~~~~~~~~ 347 (456)
T 2ez2_A 271 DDEMFSSAKELVVVYEGMPSYGGLAGRD-MEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVE-PVGGHAVFL 347 (456)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTCCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS-SCCSSEEEE
T ss_pred CHHHHHHHHHHHhhccCcccccCcchhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCcccc-CCCceEEEE
Confidence 788888877655432 1 1111112 2221332222221235566677788899999886 877643 456788888
Q ss_pred Eecc---c---hHHHHHHHHHHH-HhcCceecc-C----------------CCcEEEEEeCCC-CCHHHHHHHHHHHHHH
Q 018243 295 EITE---D---SKLYAACLLKKL-EEHGVLVMP-E----------------SSTRVRIVVHHQ-ISANDVHYTLSCFQKI 349 (359)
Q Consensus 295 ~~~~---~---~~~~~~~~~~~l-~~~gi~~~~-~----------------~~~~lRi~~~~~-~~~~~i~~~~~~l~~~ 349 (359)
.+.. . .......+.++| .++||.+.+ + +..++|++++.. ++++++++++++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 348 DARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp EHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred EhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7631 0 011134447777 788998643 1 136899999765 8999999999999999
Q ss_pred HHHHH
Q 018243 350 YAGVC 354 (359)
Q Consensus 350 ~~~~~ 354 (359)
+++..
T Consensus 428 l~~~~ 432 (456)
T 2ez2_A 428 YQHKE 432 (456)
T ss_dssp HHTGG
T ss_pred Hhhhh
Confidence 87754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=251.28 Aligned_cols=337 Identities=18% Similarity=0.266 Sum_probs=227.1
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhc----
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETR---- 77 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~---- 77 (359)
+.++||.++... |++.+++.+... +...|+..+...++++.++++++.+..++++||++|+..++..++. +
T Consensus 41 ~~ylD~~~~~~~---~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~-~~~~~ 116 (467)
T 2oqx_A 41 DVFIDLLTDSGT---GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK-KREQE 116 (467)
T ss_dssp GCSEECSCCSSC---SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHH-HHHHH
T ss_pred CeeEecccCCCc---HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhc-ccccc
Confidence 356888776655 445555544332 3346777888999999999999998889999999999999999884 6
Q ss_pred -C----CeEEecCCCcceeeccccccccCCcccee------eecC----CCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 78 -G----SEVILGDNSHIHIYENGGISTIGGVHPRT------VKNN----QDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 78 -g----~~vl~~~~~~~~~~~~~~~~~~~g~~~~~------v~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
| |+|+++ +.|+..+. ......+..++. ++.+ .++.+|+++|++.+++.. .+++++|++
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~----~~~~~~vi~ 189 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDTTQ--GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG----PNNVPYIVA 189 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHHHH--HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC----GGGCCCEEE
T ss_pred CCCCccceEEec-ccccccch--hhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC----CCceeEEEE
Confidence 7 887776 56655432 112223332221 2222 356789999999998310 026889999
Q ss_pred eccccCCC-ceecChhhHHHHHHHHHHcCcEEEEeccccc-chh-------hhcCchhHhhh----cCccEEEEeccccC
Q 018243 143 ENTHANCG-GRCLSVEYTDSVGEIAKKHGLKLHIDGARIF-NAA-------VALGVPVRRLV----QAADSASVCLSKGL 209 (359)
Q Consensus 143 ~~~~~~pt-G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~-~~~-------~~~~~~~~~~~----~~~d~~~~s~~K~~ 209 (359)
++++| |+ |.+++.+++++|+++|++||+++|+|++|.+ +.. .+.+.+...+. ..+|++++|+||++
T Consensus 190 ~~~~n-~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 190 TITSN-SAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp ESSBC-GGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred ecccc-CCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence 76654 76 8999999999999999999999999988766 432 23344444432 35788888999999
Q ss_pred CCceeeEEecCHH-HHHHHHHHHHh---hCC--Ccch-hHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 210 GAPVGSVIVGSKE-FIKKARRLRKT---LGG--GMRQ-VGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 210 g~~~gg~~~~~~~-~~~~~~~~~~~---~~~--~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
|+|.||+++++++ +++.+..+... .+. .... .....++....++... ++.+++..++++++.+.|+++ ++.
T Consensus 269 g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 347 (467)
T 2oqx_A 269 MVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVV 347 (467)
T ss_dssp CCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 9887888887665 44443333222 111 1111 1111111122223322 124455667889999999988 887
Q ss_pred EecCCccceEEEEEecc-----c-hHHHHHHHHHHH-HhcCceeccCC-----------------CcEEEEEeCCC-CCH
Q 018243 282 VDVDAVETNIVYFEITE-----D-SKLYAACLLKKL-EEHGVLVMPES-----------------STRVRIVVHHQ-ISA 336 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l-~~~gi~~~~~~-----------------~~~lRi~~~~~-~~~ 336 (359)
+. +..+.++|+.++. + ...+...+.+.| .++||.+.+++ .+++|++++.. +++
T Consensus 348 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~ 425 (467)
T 2oqx_A 348 CQ--QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQ 425 (467)
T ss_dssp EE--EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCH
T ss_pred ee--cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCH
Confidence 75 3467788888742 1 111256678899 99999997633 26899999877 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~~~ 354 (359)
+++++++++|++++++..
T Consensus 426 e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 426 THMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999988754
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=240.40 Aligned_cols=323 Identities=17% Similarity=0.202 Sum_probs=236.5
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh-hhhcCCeE
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH-CETRGSEV 81 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~-~~~~g~~v 81 (359)
+.+|+|.. +..| +++.+++.+..... .+..++...++++.++++++.+..++++||++|+..++.++ + ++|++|
T Consensus 8 ~~~i~~~~--p~~~-~~~~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~-~~gd~V 82 (393)
T 1mdo_A 8 SDFLPFSR--PAMG-AEELAAVKTVLDSG-WITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEV 82 (393)
T ss_dssp -CCBCSCC--CCCC-HHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred ccccccCC--CCCC-HHHHHHHHHHHhcC-CcCCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCC-CCCCEE
Confidence 34688887 3343 55666666543222 24467889999999999999988899999999999999998 6 589999
Q ss_pred EecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
+++.++|.+... .++..|++++.++.+++ +.+|+++|++.++ +++++|++++ |||.+.+ ++
T Consensus 83 l~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--------~~~~~v~~~~----~~G~~~~---~~ 144 (393)
T 1mdo_A 83 ITPSMTWVSTLN---MIVLLGANPVMVDVDRDTLMVTPEHIEAAIT--------PQTKAIIPVH----YAGAPAD---LD 144 (393)
T ss_dssp EEESSSCHHHHH---HHHHTTCEEEEECBCTTTCCBCHHHHHHHCC--------TTEEEECCBC----GGGCCCC---HH
T ss_pred EeCCCccHhHHH---HHHHCCCEEEEEeccCCcCCCCHHHHHHhcC--------CCceEEEEeC----CCCCcCC---HH
Confidence 999999988654 36778999999987654 6799999999998 6788888743 7888765 89
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc--ccCCCceeeEEecC-HHHHHHHHHHHHhh---
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS--KGLGAPVGSVIVGS-KEFIKKARRLRKTL--- 234 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~~~gg~~~~~-~~~~~~~~~~~~~~--- 234 (359)
+|.++|+++|+++|+|++|+.|... .+.. +.. .|+++.|+| |+++++.+|+++.+ +++.+.++......
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~g~~~-~~~~---~~~-~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~ 219 (393)
T 1mdo_A 145 AIYALGERYGIPVIEDAAHATGTSY-KGRH---IGA-RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGV 219 (393)
T ss_dssp HHHHHHHHHTCCBCEECTTCTTCEE-TTEE---TTS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEEC
T ss_pred HHHHHHHHcCCeEEEECccccCCeE-CCee---cCC-CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcc
Confidence 9999999999999999998765432 2222 211 788888988 99976666888875 88888876543321
Q ss_pred -------------------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-----ccce
Q 018243 235 -------------------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-----VETN 290 (359)
Q Consensus 235 -------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-----~~~~ 290 (359)
|.+....++.++++...++... +..++..++++++.+.|+++ ++++...+ ..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~-~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~ 297 (393)
T 1mdo_A 220 DAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD-ALNARRAAIAAQYHQAMADL-PFQPLSLPSWEHIHAWH 297 (393)
T ss_dssp C-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHTS-SCEECCCCSSCEECCCS
T ss_pred cchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-CcccccCCCCCCCceeE
Confidence 1112234555555555555433 36667778899999999998 47763222 2345
Q ss_pred EEEEEeccc-hHHHHHHHHHHHHhcCceeccCC-------------------------CcEEEEEeCCCCCHHHHHHHHH
Q 018243 291 IVYFEITED-SKLYAACLLKKLEEHGVLVMPES-------------------------STRVRIVVHHQISANDVHYTLS 344 (359)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~~~l~~~gi~~~~~~-------------------------~~~lRi~~~~~~~~~~i~~~~~ 344 (359)
++++.++.. .+.+..++.+.|.++||.+.++. ...+|++++..++++|++++++
T Consensus 298 ~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~ 377 (393)
T 1mdo_A 298 LFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVIT 377 (393)
T ss_dssp CEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHH
T ss_pred EEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHH
Confidence 688888630 01367889999999999886643 2269999988899999999999
Q ss_pred HHHHHHHHHHh
Q 018243 345 CFQKIYAGVCE 355 (359)
Q Consensus 345 ~l~~~~~~~~~ 355 (359)
+|+++++...-
T Consensus 378 ~l~~~~~~~~~ 388 (393)
T 1mdo_A 378 ALHQIAGQGSH 388 (393)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHhcCCc
Confidence 99999877653
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=237.22 Aligned_cols=308 Identities=13% Similarity=0.109 Sum_probs=224.2
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-e-EEcCCchHHHHHHHHHhhhhcC-C
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-G-LFVPSGTMGNLISVLVHCETRG-S 79 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~-~~~~~gt~a~~~~l~~~~~~~g-~ 79 (359)
.+|||+++.+..++ |.+ + ......|... ...++++.++++++.+. . ++++||++++..++.+++ ++| +
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~~~~~~Y~~~-~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d 101 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----QQTLNRYPEC-QPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKD 101 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----CCCTTSCCCS-SCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-CTTTC
T ss_pred ceEEeeCCCCCCCCCHhH--h----hhhhccCCCc-cHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh-CCCCC
Confidence 56899998655443 555 2 2233445543 37899999999999863 3 555666778888888887 589 9
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|+++.|+|..... .+...|.+++.++.++++.+|++++++.++ ++++|++++ ++||||.++|.+++
T Consensus 102 ~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---------~~~~v~l~~-p~nptG~~~~~~~l 168 (356)
T 1fg7_A 102 AILYCPPTYGMYSV---SAETIGVECRTVPTLDNWQLDLQGISDKLD---------GVKVVYVCS-PNNPTGQLINPQDF 168 (356)
T ss_dssp EEEECSSSCTHHHH---HHHHHTCEEEECCCCTTSCCCHHHHHTSCT---------TEEEEEEES-SCTTTCCCCCHHHH
T ss_pred EEEEeCCChHHHHH---HHHHcCCEEEEeeCCCCCCCCHHHHHHHhc---------CCCEEEEeC-CCCCCCCCCCHHHH
Confidence 99999999877554 366778899888877777889998887664 467888865 56799999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
++|+++|+ +|+++|+||+|..+.. +.+...+. .+.++++.|+||++|.++. |++++++++++.++.....+
T Consensus 169 ~~l~~~~~-~~~~li~De~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~- 243 (356)
T 1fg7_A 169 RTLLELTR-GKAIVVADEAYIEFCP---QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY- 243 (356)
T ss_dssp HHHHHHHT-TTCEEEEECTTGGGSG---GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS-
T ss_pred HHHHHhCC-CCCEEEEEccchhhcC---CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC-
Confidence 99999999 9999999999764331 22222221 1334666799999985442 88888999988877654433
Q ss_pred CCcchhHHHHHHHHHHHHH--h--HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH
Q 018243 236 GGMRQVGVLCAAALVALQE--N--VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
..+...+.++..+++. . .++.+++..++++++.+.|++++++.... +..++++|+.++ +..++.++|
T Consensus 244 ---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~-----~~~~l~~~L 314 (356)
T 1fg7_A 244 ---PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVF-DSETNYILARFK-----ASSAVFKSL 314 (356)
T ss_dssp ---CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CCSSSEEEEEET-----THHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEC-CCCCeEEEEECC-----CHHHHHHHH
Confidence 2344555555555532 2 45566778888999999999985542222 457889999886 356889999
Q ss_pred HhcCceecc-CC----CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 312 EEHGVLVMP-ES----STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 312 ~~~gi~~~~-~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.++||.+.+ +. .+++|++++ +++++++++++|+++
T Consensus 315 ~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 315 WDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 999999988 43 358999994 689999999998753
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=236.16 Aligned_cols=313 Identities=14% Similarity=0.116 Sum_probs=228.3
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhh
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.+|||.++.+..+ +|.+.+++.+..... ..|. .+...++++.+++++|.+ ..++++||++|+..++..++ +
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~-~ 104 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA-A 104 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-C
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh-C
Confidence 4799998866544 589999998765442 2343 345689999999999954 45788888899999999887 5
Q ss_pred cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
+||+|+++.|+|.+... .++..|.+++.++.++++.+ ++++ +. .++++++++++ +||||.++|
T Consensus 105 ~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~--~~l~---~~-------~~~~~v~i~~p-~nptG~~~~- 167 (360)
T 3hdo_A 105 EGEEIGYVHPSYSYYGT---LAEVQGARVRTFGLTGDFRI--AGFP---ER-------YEGKVFFLTTP-NAPLGPSFP- 167 (360)
T ss_dssp TTCEEEEESSSCTHHHH---HHHHHTCEEEEECBCTTSSB--TTCC---SS-------BCSSEEEEESS-CTTTCCCCC-
T ss_pred CCCEEEEcCCChHHHHH---HHHHCCCEEEEeeCCCCCCH--HHHH---hh-------cCCCEEEEeCC-CCCCCCCcC-
Confidence 99999999999887654 36777889999987766544 2222 21 24567888555 669999999
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-h-cCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHH
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-V-QAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~-~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~ 232 (359)
++++.++|+++|+++|+|++|+.. . +.....+ . .+.++++.|+||++|.++ + |+++.++++.+.++....
T Consensus 168 --~~~l~~l~~~~~~~li~De~~~~~--~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 241 (360)
T 3hdo_A 168 --LEYIDELARRCAGMLVLDETYAEF--A--ESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD 241 (360)
T ss_dssp --HHHHHHHHHHBSSEEEEECTTGGG--S--SCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHCCCEEEEECChHhh--C--CcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC
Confidence 577888889999999999997542 1 1111111 1 133355669999997543 2 888899999988776553
Q ss_pred hhCCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHH
Q 018243 233 TLGGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKK 310 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
. +..+...++++..+++ .+.++.+++..++++++.+.|+++ ++.+. +..++++|+.++. .+..++.+.
T Consensus 242 ~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~~~~~~~~~~~~---~~~~~l~~~ 311 (360)
T 3hdo_A 242 H----YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI--PSQGNYLFATPPD---RDGKRVYDG 311 (360)
T ss_dssp S----CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC--CCSSSEEEEECTT---CCHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc--CCCccEEEEECCC---CCHHHHHHH
Confidence 3 2234555555555554 334557777888999999999998 88874 4478888888764 367889999
Q ss_pred HHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 311 LEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 311 l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
|.++||.+.+++ ..++|++++ +++++++++++|+++.+...
T Consensus 312 l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~~~~ 356 (360)
T 3hdo_A 312 LYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGEGHH 356 (360)
T ss_dssp HHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC---
T ss_pred HHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhcccc
Confidence 999999997754 478999984 89999999999987776543
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=241.53 Aligned_cols=322 Identities=16% Similarity=0.142 Sum_probs=232.5
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 10 SDTVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 10 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
+.++..+++.+.+++.+..... |.. .+...++++.++++++.+. .++++||++++..++..++ ++|++|+++
T Consensus 23 ~~~p~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~vl~~ 99 (396)
T 2ch1_A 23 GPGPSNCSKRVLTAMTNTVLSN--FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-EEGDRVLIA 99 (396)
T ss_dssp SSSSCCCCHHHHHHTTSCCCCT--TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred cCCCCCCCHHHHHHhccccccC--CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-CCCCeEEEE
Confidence 3345556689999998865332 322 2347899999999999874 3566778899999998887 599999999
Q ss_pred CCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCceecChhhHHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
+|+|.+... ...++..|++++.++.+.++.+|+++|++.++ + ++++|++++ ++||||.+++ +++|.
T Consensus 100 ~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~--------~~~~~~v~~~~-~~nptG~~~~---~~~i~ 166 (396)
T 2ch1_A 100 VNGIWAERA-VEMSERYGADVRTIEGPPDRPFSLETLARAIE--------LHQPKCLFLTH-GDSSSGLLQP---LEGVG 166 (396)
T ss_dssp ESSHHHHHH-HHHHHHTTCEEEEEECCTTSCCCHHHHHHHHH--------HHCCSEEEEES-EETTTTEECC---CTTHH
T ss_pred cCCcccHHH-HHHHHHcCCceEEecCCCCCCCCHHHHHHHHH--------hCCCCEEEEEC-CCCCCceecC---HHHHH
Confidence 999887521 02367789899999887788899999999998 5 788999855 5569999998 78999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH------------
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL------------ 230 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~------------ 230 (359)
++|+++|+++|+|++|.++... .....+ ++|+++.|+||+++++.| |+++.++++++.+...
T Consensus 167 ~l~~~~~~~li~Dea~~~g~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (396)
T 2ch1_A 167 QICHQHDCLLIVDAVASLCGVP---FYMDKW--EIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 241 (396)
T ss_dssp HHHHHTTCEEEEECTTTBTTBC---CCTTTT--TCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHHcCCEEEEEccccccCCc---cchhhc--CcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechH
Confidence 9999999999999998765321 122222 578888899999877666 8888898887775421
Q ss_pred --HHhhC------CC-cchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc---cceEEEE
Q 018243 231 --RKTLG------GG-MRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV---ETNIVYF 294 (359)
Q Consensus 231 --~~~~~------~~-~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---~~~~~~~ 294 (359)
...++ .. ...+.....++..+++ ...++.++++.++++++.+.|+++ |+++..+.. .+.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 320 (396)
T 2ch1_A 242 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGI 320 (396)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEE
T ss_pred HHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEE
Confidence 00111 00 1112222333333333 334456778888999999999998 887753321 1237788
Q ss_pred EeccchHHHHHHHHHHHHh-cCceeccC----CCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 295 EITEDSKLYAACLLKKLEE-HGVLVMPE----SSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~-~gi~~~~~----~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.++. +.+..++.++|.+ +||.+.++ ..+++|+++ ....+++++++++++|+++++++..
T Consensus 321 ~~~~--~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 321 MIPK--GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp ECCT--TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred EcCC--CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 8753 2467889999965 59999764 357899999 4466899999999999999987753
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=236.58 Aligned_cols=322 Identities=15% Similarity=0.167 Sum_probs=233.6
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhh--hhcCCeEE
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHC--ETRGSEVI 82 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~--~~~g~~vl 82 (359)
.|.|.. ..++|.+.+++.+..... .+.+++...++++.+++++|.+..++++||++|+..++.++. .++|++|+
T Consensus 3 ~i~~~~---~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl 78 (375)
T 2fnu_A 3 EFAYSE---PCLDKEDKKAVLEVLNSK-QLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEII 78 (375)
T ss_dssp CEESCC---CCCCHHHHHHHHHHHTSS-CCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred ccccCC---CCCCHHHHHHHHHHHHcC-cccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEE
Confidence 456643 344577888887754332 244578889999999999999978899999999999999982 25899999
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
++.++|.+... . +...|++++.++.+.++.+|+++|++.++ +++++|+++++ ||.+.+ +++|
T Consensus 79 ~~~~~~~~~~~-~--~~~~g~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~~----tG~~~~---l~~i 140 (375)
T 2fnu_A 79 TTPISFVATAN-M--LLESGYTPVFAGIKNDGNIDELALEKLIN--------ERTKAIVSVDY----AGKSVE---VESV 140 (375)
T ss_dssp ECSSSCTHHHH-H--HHHTTCEEEECCBCTTSSBCGGGSGGGCC--------TTEEEEEEECG----GGCCCC---HHHH
T ss_pred ECCCccHhHHH-H--HHHCCCEEEEeccCCCCCCCHHHHHhhcC--------cCceEEEEeCC----cCCccC---HHHH
Confidence 99999988765 2 66688899999887777889999999887 67888777554 798877 7999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc--ccCCCceeeEEec-CHHHHHHHHHHHHhh-----
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS--KGLGAPVGSVIVG-SKEFIKKARRLRKTL----- 234 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~~~gg~~~~-~~~~~~~~~~~~~~~----- 234 (359)
.++|++||+++|+|++|+++... .+..... ..|+++.|+| |+++.+.|++++. ++++.+.++......
T Consensus 141 ~~l~~~~~~~li~D~a~~~~~~~-~~~~~~~---~~~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2fnu_A 141 QKLCKKHSLSFLSDSSHALGSEY-QNKKVGG---FALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKD 216 (375)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEE-TTEETTS---SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESS
T ss_pred HHHHHHcCCEEEEECccccCCeE-CCeeccc---cCCeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCcccc
Confidence 99999999999999998765442 1211111 1256656666 9997544455553 477888776554221
Q ss_pred ---------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC----ccceEEEEEeccchH
Q 018243 235 ---------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA----VETNIVYFEITEDSK 301 (359)
Q Consensus 235 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~----~~~~~~~~~~~~~~~ 301 (359)
+.+.......++++...++ ..++..++..++++++.+.|+++|++++..++ ....++++.++. .+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 294 (375)
T 2fnu_A 217 FFEGEVKSIGHNFRLNEIQSALGLSQLK-KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ-KF 294 (375)
T ss_dssp SSCEEESSCCCBCCCCHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG-GG
T ss_pred ccccccccccccCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCc-cc
Confidence 1111234444444444443 33447778888999999999998888874331 122345677764 23
Q ss_pred H-HHHHHHHHHHhcCceecc----CC---------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 302 L-YAACLLKKLEEHGVLVMP----ES---------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 302 ~-~~~~~~~~l~~~gi~~~~----~~---------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. +..++.+.|.++||.+.. .. ...+|++++..++++++++++++|+++++++.
T Consensus 295 ~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 295 FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3 678899999999999862 10 15799999888999999999999999988764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=240.84 Aligned_cols=326 Identities=19% Similarity=0.162 Sum_probs=230.8
Q ss_pred ccccccCC---CCC-ChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhh
Q 018243 4 RTVDLRSD---TVT-KPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 4 ~~id~~~~---~~~-~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++||.++ ++. .++|++.+++.+....... ....+...++++.+++++|.+..++++||++|+..++..+...
T Consensus 58 ~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~ 137 (420)
T 2pb2_A 58 EYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHY 137 (420)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 57899876 333 4468888888775433211 1245778999999999999887899999999999999988632
Q ss_pred ------cC-CeEEecCCCcceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 77 ------RG-SEVILGDNSHIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 77 ------~g-~~vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
+| ++|++.+++|..... ......|.+ +..++.+ |+++|++.++ +++
T Consensus 138 ~~~~~~~g~~~vi~~~~~yh~~~~--~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~--------~~~ 202 (420)
T 2pb2_A 138 ACVRHSPFKTKIIAFHNAFHGRSL--FTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMD--------DHT 202 (420)
T ss_dssp HHHHTCTTCCEEEEETTCCCCSSH--HHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCC--------TTE
T ss_pred hhhccCCCCCEEEEEeCCcCCcCH--HHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhc--------cCc
Confidence 56 489998888765443 123333432 3333332 8999999998 689
Q ss_pred eEEEEeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh--HhhhcCccEEEEeccccCCCcee
Q 018243 138 RLICLENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV--RRLVQAADSASVCLSKGLGAPVG 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~g~~~g 214 (359)
++|+++++ +|++| .+++.+++++|+++|++||+++|+||+|. + +...+... .......|++ |++|+++++..
T Consensus 203 ~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g-~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~ 277 (420)
T 2pb2_A 203 CAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-G-MGRTGDLFAYMHYGVTPDIL--TSAKALGGGFP 277 (420)
T ss_dssp EEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSHHHHHTCCCSEE--EECGGGGTTSC
T ss_pred eEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-C-cccCCcHHHHHhcCCCCCeE--EecccccCCCc
Confidence 99999665 55888 46888999999999999999999999984 2 22223221 2222356766 67899975333
Q ss_pred -eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC----CCceEecCCcc
Q 018243 215 -SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVE 288 (359)
Q Consensus 215 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~ 288 (359)
|+++.++++++.+... ..+.++..+++.++++..+++... ++..++..++++++.+.|+++ |.+... +..
T Consensus 278 iG~~~~~~~l~~~l~~~--~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~ 353 (420)
T 2pb2_A 278 VSAMLTTQEIASAFHVG--SHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDI--RGM 353 (420)
T ss_dssp CEEEEECHHHHTTCC------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE--EEE
T ss_pred eEEEEEhHHHHHhhcCC--CcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE--Eec
Confidence 7777888877665432 233444456666777776665432 236667778888888888764 333322 236
Q ss_pred ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++++.++.....+..++.+.|.++||.+.+++..++|++++...+++++++++++|+++++++
T Consensus 354 g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 354 GLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TTEEEEEECGGGTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78888888652111467899999889999999888899999888899999999999999998775
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=251.25 Aligned_cols=335 Identities=13% Similarity=0.100 Sum_probs=232.8
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CC-------CCeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GK-------EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-------~~~~~~~~gt~a~~~~l~~ 72 (359)
.+|+|..+.+..++|.+.+++.+......++....+..++++.+++++ +. +..++++||++|+..++..
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~ 183 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHS 183 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence 357888888877777777766654444444445667788999888887 32 2346667777888888887
Q ss_pred h----hhhcCCeEEecCCCcceeeccccccccCCccceeeecC----CCCCCCHHHHHHHhcCCCCCccCCceeEEEEec
Q 018243 73 H----CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN----QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 73 ~----~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~ 144 (359)
+ +.++||+|+++.|+|.+... .+...|.+++.++.+ .++.+|+++|++.++ +++++|++++
T Consensus 184 l~~~~l~~~gd~Viv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~--------~~~k~v~l~~ 252 (533)
T 3f6t_A 184 LAENHLLKKGDKIAINEPIFTPYLR---IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD--------PSIKALIVVN 252 (533)
T ss_dssp HHHTTSSCTTCEEEEESSCCHHHHT---SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC--------TTEEEEEEES
T ss_pred hhhhhccCCcCEEEEcCCCcHHHHH---HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC--------CCCeEEEEeC
Confidence 3 33699999999999988654 366778788877653 457889999999998 7899999975
Q ss_pred cccCCCceecChhhHHHHHHHHH-HcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCH
Q 018243 145 THANCGGRCLSVEYTDSVGEIAK-KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSK 221 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~-~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~ 221 (359)
+ +||||.+++.+++++|+++|+ +||+++|+|++|.... +...+......+.++++.|+||.+|.++. |++++++
T Consensus 253 p-~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 253 P-TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV--PNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp S-CTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS--TTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred C-CCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc--cCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECc
Confidence 5 569999999999999999999 6899999999975322 22334444433344677799999986542 7777755
Q ss_pred H-----HHHHH--------------------------------HHHHHhhCCCcchhHHHHHH--HHHHHH---------
Q 018243 222 E-----FIKKA--------------------------------RRLRKTLGGGMRQVGVLCAA--ALVALQ--------- 253 (359)
Q Consensus 222 ~-----~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~l~--------- 253 (359)
+ +++.+ +........+.+...+.+++ +..++.
T Consensus 330 ~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~ 409 (533)
T 3f6t_A 330 KNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDD 409 (533)
T ss_dssp SCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBC
T ss_pred HHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchH
Confidence 4 32221 11111222233222222221 334442
Q ss_pred HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccch--------------HHHHHHHHHHH-HhcCcee
Q 018243 254 ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS--------------KLYAACLLKKL-EEHGVLV 318 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~~ 318 (359)
...++.++++.++++.+.+.|. . ++.+. .+..+.++|+.++.-. ..+..++...| .++||.+
T Consensus 410 ~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v 486 (533)
T 3f6t_A 410 PYIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVL 486 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEE
Confidence 4455567778889999999997 6 66653 4567788888876300 01344555555 7899999
Q ss_pred ccCC-----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 319 MPES-----STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 319 ~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
.|+. .+++|+++. .++++++++++++|.++++++.++
T Consensus 487 ~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~~ 528 (533)
T 3f6t_A 487 VDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKEYYEE 528 (533)
T ss_dssp CTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8763 578999995 478999999999999999988754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=237.08 Aligned_cols=313 Identities=17% Similarity=0.133 Sum_probs=226.5
Q ss_pred cccccCCCCC-ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHH------hCCC-Ce-EEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVT-KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKV------MGKE-AG-LFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~-~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~------~~~~-~~-~~~~~gt~a~~~~l~ 71 (359)
.|||.++.+. +++|.+.+++.+.... ...|+.... .++++.++++ ++.+ .. ++++||++++..++.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~ 110 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQ 110 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHH
Confidence 3889888664 4558888887764322 234544334 6899999998 4433 23 555555677778888
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCG 150 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~pt 150 (359)
+++ ++|++|++++|+|.+... .+...|.+++.++.+.++.+|++++++.++ + ++++|++++ ++|||
T Consensus 111 ~l~-~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~~v~~~~-~~npt 177 (369)
T 3cq5_A 111 AFG-GPGRTALGFQPSYSMHPI---LAKGTHTEFIAVSRGADFRIDMDVALEEIR--------AKQPDIVFVTT-PNNPT 177 (369)
T ss_dssp HHC-STTCEEEEEESSCTHHHH---HHHHTTCEEEEEECCTTSSCCHHHHHHHHH--------HHCCSEEEEES-SCTTT
T ss_pred Hhc-CCCCEEEEcCCChHHHHH---HHHHcCCEEEEecCCcCCCCCHHHHHHHhh--------ccCCCEEEEeC-CCCCC
Confidence 877 589999999999887654 366778899999877777899999999998 4 788999855 55699
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc--C-ccEEEEeccccCCCce--eeEEecCHHHHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ--A-ADSASVCLSKGLGAPV--GSVIVGSKEFIK 225 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~--~-~d~~~~s~~K~~g~~~--gg~~~~~~~~~~ 225 (359)
|.++| ++++.++++.+++++|+|++|+.+... .+...+.. + .++++.|+||++|.++ .|++++++++.+
T Consensus 178 G~~~~---~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 251 (369)
T 3cq5_A 178 GDVTS---LDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFID 251 (369)
T ss_dssp CCCCC---HHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHH
T ss_pred CCCCC---HHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHH
Confidence 99998 466666666777999999998654421 22222211 2 3466779999998543 288888888887
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHHHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVALQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
.+......+ ..+...++++..+++. ..++.++++.++++++.+.|++. |+++. +..++++++.++. +
T Consensus 252 ~l~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~----~ 320 (369)
T 3cq5_A 252 AVMLVRLPY----HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV--PSESNFVFFGDFS----D 320 (369)
T ss_dssp HHHTTSCTT----CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE--CCSSSEEEEECCS----S
T ss_pred HHHHcCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC--CCCCeEEEEECCC----C
Confidence 765443322 2344555555555542 34456677888899999999886 88875 3467888888763 5
Q ss_pred HHHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..++.+.|.++||.+.+++ ..++|++++ +++++++++++|+++++
T Consensus 321 ~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 321 QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 6789999999999998863 578999995 78999999999998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=239.79 Aligned_cols=315 Identities=16% Similarity=0.089 Sum_probs=228.3
Q ss_pred CChHHHHHHHHHcCCCCCC-ccCC----ChHHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhh----------
Q 018243 14 TKPTEAMRAAMASAEVDDD-VLMH----DPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCET---------- 76 (359)
Q Consensus 14 ~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~---------- 76 (359)
..++|++.+++.+...... .+.. .+...++++.+++++|.+.. ++++||++|+..++..+...
T Consensus 40 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 3f9t_A 40 SNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119 (397)
T ss_dssp CCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3455788888877543311 1111 33446788899999998764 88899999999999998852
Q ss_pred --cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCC-ceeEEEEeccccCCCcee
Q 018243 77 --RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP-TTRLICLENTHANCGGRC 153 (359)
Q Consensus 77 --~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~v~i~~~~~~ptG~~ 153 (359)
+|++|+++.++|.+... .+...|.+++.++.++++.+|+++|++.++ + ++++|++++++ ||||.+
T Consensus 120 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~~v~~~~~~-nptG~~ 187 (397)
T 3f9t_A 120 KNEHPKIIVPITAHFSFEK---GREMMDLEYIYAPIKEDYTIDEKFVKDAVE--------DYDVDGIIGIAGT-TELGTI 187 (397)
T ss_dssp CCSSCEEEEETTCCTHHHH---HHHHHTCEEEEECBCTTSSBCHHHHHHHHH--------HSCCCEEEEEBSC-TTTCCB
T ss_pred CCCCeEEEECCcchhHHHH---HHHHcCceeEEEeeCCCCcCCHHHHHHHHh--------hcCCeEEEEECCC-CCCCCC
Confidence 38999999999988664 366779999999988889999999999998 5 78899886654 699998
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc---------hhHhhhcCccEEEEeccccCCCcee-eEEe-cCHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV---------PVRRLVQAADSASVCLSKGLGAPVG-SVIV-GSKE 222 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---------~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~-~~~~ 222 (359)
.+ +++|.++|++||+++|+|++|+.+.....+. ...... +.|+++.|+||+++++.+ |+++ .++.
T Consensus 188 ~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 188 DN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIG 263 (397)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGG
T ss_pred CC---HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHH
Confidence 76 8999999999999999999987655433321 111112 678999999999865544 5444 4655
Q ss_pred HHHHHHHHHHhhCC--------Ccc-hhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 223 FIKKARRLRKTLGG--------GMR-QVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 223 ~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
+.+.++........ +.. .+...+.++...+ ....++..++..++++++.+.|+++ ++++..+ ..++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~ 341 (397)
T 3f9t_A 264 YKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIE-PILNIV 341 (397)
T ss_dssp GGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC-CSSSEE
T ss_pred HHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcC-CCccEE
Confidence 55443221222111 111 1223333333333 2334447777889999999999999 8886443 467788
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.++. ..++.+.|.++||.+.++. +.++|++++..++++++++++++|+++++
T Consensus 342 ~~~~~~-----~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 342 AIEDED-----YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EEECTT-----HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEEeCC-----HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 877653 5688999988999998775 58999999888899999999999998865
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=239.19 Aligned_cols=317 Identities=18% Similarity=0.159 Sum_probs=224.8
Q ss_pred ccccccCCCC---CC-hHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhCC-CCeEEcCCchHHHHHHHHHh-
Q 018243 4 RTVDLRSDTV---TK-PTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMGK-EAGLFVPSGTMGNLISVLVH- 73 (359)
Q Consensus 4 ~~id~~~~~~---~~-~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~-~~~~~~~~gt~a~~~~l~~~- 73 (359)
.++||.++.+ .+ ++|.+.+++.+.... ...| ..+...++++.+++++|. +..++++||++|+..++..+
T Consensus 29 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~ 107 (375)
T 2eh6_A 29 EYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLAR 107 (375)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHH
Confidence 4688887642 23 567888877664321 1234 356788999999999998 66688899999999988753
Q ss_pred -hh---hcC-CeEEecCCCcceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 74 -CE---TRG-SEVILGDNSHIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 74 -~~---~~g-~~vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
.. ++| ++|++++++|..... ......+.. +..++. .|+++|++.++ ++
T Consensus 108 ~~~~~~~~g~~~vl~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~--------~~ 172 (375)
T 2eh6_A 108 KYWRDKGKNKWKFISFENSFHGRTY--GSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLD--------EE 172 (375)
T ss_dssp HHHHHTTCCCCEEEEEBTCCCCSSH--HHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCC--------TT
T ss_pred HHhccCCCCCCEEEEECCCcCCCch--hhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhc--------CC
Confidence 22 467 899999998665443 112222211 222222 38999999888 68
Q ss_pred eeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhcCccEEEEeccccCCCcee
Q 018243 137 TRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG 214 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g 214 (359)
+++|++++ ++||||.+. +.+++++|.++|++||+++|+|++|+ ++... .......+....|++ |+||+++++.+
T Consensus 173 ~~~v~~~~-~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~d~~--s~SK~~~~g~~ 248 (375)
T 2eh6_A 173 TAGIIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQHFNLKPDVI--ALAKGLGGGVP 248 (375)
T ss_dssp EEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEE--EECGGGGTTSC
T ss_pred eEEEEEeC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhhcCCCCCEE--EEcccccCCCC
Confidence 99999955 677999984 57889999999999999999999986 32211 111222232236766 55699986555
Q ss_pred -eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 215 -SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 215 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
|+++.++++++.++.. ..+.++..++..++++..+++... +..++..++++++.+.|++++. ... +..+++++
T Consensus 249 ~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~L~~~~~-~~~--~~~g~~~~ 322 (375)
T 2eh6_A 249 IGAILAREEVAQSFTPG--SHGSTFGGNPLACRAGTVVVDEVE-KLLPHVREVGNYFKEKLKELGK-GKV--KGRGLMLG 322 (375)
T ss_dssp CEEEEEEHHHHTTCCTT--SCCCSSTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTS-SEE--EEETTEEE
T ss_pred eEEEEEcHHHHhhhcCC--CCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCc--eEEEEEEE
Confidence 8888888877665431 133344445566666666666544 4677888899999999998843 322 34678899
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.++. +..++.+.|.++||.+.+++..++|++++...+++++++++++|++++
T Consensus 323 ~~~~~----~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 323 LELER----ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp EECSS----CCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEcC----cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 98865 356788999889999988878899999988899999999999998753
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=232.40 Aligned_cols=309 Identities=17% Similarity=0.148 Sum_probs=221.0
Q ss_pred cccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~ 79 (359)
.++|||.++ ++.+|+|.+.+++.+.......| +.+...++++.++++++.+. .+++++|+ +++..++..+ +|+
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~---~gd 91 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRY-PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF---SSM 91 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSC-CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS---TTS
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccC-CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc---CCC
Confidence 357999998 55567799999998865555556 35788999999999999864 45555554 5555555554 899
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
+|+++.|+|.+... .++..|.+++.++.++++.+|++++++. .++++++++++ +||||.++| +
T Consensus 92 ~vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~----------~~~~~v~i~~p-~nptG~~~~---~ 154 (337)
T 3p1t_A 92 RFVTAWPGFDGYRA---RIAVSGLRHFEIGLTDDLLLDPNDLAQV----------SRDDCVVLANP-SNPTGQALS---A 154 (337)
T ss_dssp EEEEESSSCSHHHH---HHTTSCCEEEEECBCTTSSBCHHHHTTC----------CTTEEEEEESS-CTTTCCCCC---H
T ss_pred eEEEeCCCcHHHHH---HHHHcCCEEEEecCCCCCCCCHHHHHhh----------cCCCEEEEeCC-CCCCCCCCC---H
Confidence 99999999887654 3777899999998888888999988764 24678888565 569999999 5
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHHhhCCC
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTLGGG 237 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
+++.++|+++++ +|+|++|.. +...+...... ...++++.|+||++|.++ + ||+++++++++.++.....
T Consensus 155 ~~l~~l~~~~~~-~ivDea~~~--~~~~~~~~~~~-~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---- 226 (337)
T 3p1t_A 155 GELDQLRQRAGK-LLIDETYVD--YSSFRARGLAY-GENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWF---- 226 (337)
T ss_dssp HHHHHHHHHCSE-EEEECTTGG--GSSCSSSCCCC-BTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSCT----
T ss_pred HHHHHHHHhCCc-EEEECCChh--hcccccccccc-CCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcCC----
Confidence 667777888887 566999743 21111111111 234567779999998433 3 8999999998887554322
Q ss_pred cchhHHHHHHHHHHHHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcC
Q 018243 238 MRQVGVLCAAALVALQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHG 315 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 315 (359)
...+...+.++..+++. ..++.+++..++++++.+.|+++ |+.+. +..++++++..+. ..++.+.|.++|
T Consensus 227 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~-----~~~~~~~l~~~g 298 (337)
T 3p1t_A 227 CNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVA--SSEANFVLVENAA-----GERTLRFLRERG 298 (337)
T ss_dssp TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC--CCSSSEEEEECTT-----THHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEEC--CCCCeEEEEEcCC-----HHHHHHHHHHCC
Confidence 22233444444455532 23346666777889999999998 88764 3467788877654 346778889999
Q ss_pred ceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 316 VLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 316 i~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
|.+.++. .+++|++++ +++++++++++|+++.+
T Consensus 299 i~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 299 IQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp EECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred eEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 9997764 578999984 78999999999988754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=238.85 Aligned_cols=322 Identities=16% Similarity=0.131 Sum_probs=228.5
Q ss_pred cccccccCCCCC----ChHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTVT----KPTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~~----~~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++... ..+|.+.+++.+...... .....+...++++.+++++|.+..++++||++|+..++..+..
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~ 115 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARR 115 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHH
Confidence 356888876432 235888888876543211 1233567899999999999987789999999999999998774
Q ss_pred h--------c-CCeEEecCCCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 76 T--------R-GSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 76 ~--------~-g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
. + +++|++..++|.+... ......+. .+..++.+ |+++|++.++
T Consensus 116 ~~~~~~~~~~~~~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~-------- 180 (392)
T 3ruy_A 116 WAYDVKKVEANRAEIIVCEDNFHGRTM--GAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAIT-------- 180 (392)
T ss_dssp HHHHTSCCCTTCCEEEEETTCCCCSSH--HHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCC--------
T ss_pred hhhhccCCCCCCcEEEEEcCCcCCCCH--hhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhc--------
Confidence 2 2 5699999999866543 11222111 12233332 8999999998
Q ss_pred CceeEEEEeccccCCCceecChhh-HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc-
Q 018243 135 PTTRLICLENTHANCGGRCLSVEY-TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP- 212 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~-l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~- 212 (359)
+++++|+++++ +||||.+++.++ +++|.++|++||+++|+||+|+..................|++ ++||+++++
T Consensus 181 ~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~gG~ 257 (392)
T 3ruy_A 181 PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGGGV 257 (392)
T ss_dssp TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTT
T ss_pred cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhCCh
Confidence 78999999774 669999996655 9999999999999999999984211111111111222245666 556988752
Q ss_pred -eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC--CCceEecCCcc
Q 018243 213 -VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVE 288 (359)
Q Consensus 213 -~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~~ 288 (359)
..|++++++++.+.+.... .+.++..++..++++..+++... ++..++..++++++.+.|+++ +.+... +..
T Consensus 258 ~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~ 333 (392)
T 3ruy_A 258 FPISCAAANRDILGVFEPGS--HGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV--RGK 333 (392)
T ss_dssp SCCEEEEECHHHHTTCCTTS--SCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE--EEE
T ss_pred hhhEEEEECHHHHhhhccCC--cCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE--Eee
Confidence 3488888988877654332 23334446666666666665432 335667888899999999987 234432 336
Q ss_pred ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++++++.++. +..++.+.|.++||.+.+++..++|++++...+++++++++++|++++
T Consensus 334 g~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 334 GLFIGIELNE----PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TTEEEEEESS----CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEcc----hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7777777764 567899999999999999989999999888999999999999999876
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=238.45 Aligned_cols=327 Identities=12% Similarity=0.123 Sum_probs=230.7
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHH-HHHhC-CCCeEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEM-AKVMG-KEAGLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~l-a~~~~-~~~~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
|.+|.|.......+ +++.+++.+...... |. .++...++|+.+ ++++| .+..++++||++|+..++.++..++||
T Consensus 2 ~~~i~~~~p~~~~~-~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd 79 (377)
T 3ju7_A 2 MENIPFLRASTVPV-IEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGK 79 (377)
T ss_dssp -CCBCSCCCCCCCG-GGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCC
T ss_pred CceeeccCCCCCCc-HHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcC
Confidence 45677776555443 444444444332222 43 478899999999 99999 778899999999999999998336999
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCc--eeEEEEeccccCCCceecCh
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPT--TRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~--~~~v~i~~~~~~ptG~~~~~ 156 (359)
+|+++.++|.++.. .+...|++++.++.+ .++.+|++++++.+.+ ++ +++|+. +||+|...+
T Consensus 80 ~Vi~~~~~~~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------~~~~tk~v~~----~~~~G~~~~- 144 (377)
T 3ju7_A 80 YALMPSFTFPATPL---AAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE-------LKEEVAIVVP----YATFGSWMN- 144 (377)
T ss_dssp EEEEESSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH-------HGGGEEEECC----BCGGGBCCC-
T ss_pred EEEECCCCcHHHHH---HHHHcCCEEEEEecCCccCCcCHHHHHHHHhc-------CCCCceEEEE----ECCCCCccC-
Confidence 99999999988664 366789999999876 5688999999999831 45 888874 237888776
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHhh-
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKTL- 234 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~~- 234 (359)
+++|.++|+ +|+++|+|++|++|... .+........+.++++++.+|+++++.||+++. ++++.++++.++...
T Consensus 145 --~~~i~~la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~ 220 (377)
T 3ju7_A 145 --LEEYEELEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGF 220 (377)
T ss_dssp --CHHHHHHHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTB
T ss_pred --HHHHHHHHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCC
Confidence 789999999 99999999999877542 222221111133344456789998766676655 788888887766532
Q ss_pred ---------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce--EecCCc-cce--EEEEEeccch
Q 018243 235 ---------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR--VDVDAV-ETN--IVYFEITEDS 300 (359)
Q Consensus 235 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~--~~~~~~-~~~--~~~~~~~~~~ 300 (359)
+.+..++++.++.+..+++.... +.++..++++++.+.|++++++. +..... ... ++.+.++.
T Consensus 221 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 297 (377)
T 3ju7_A 221 DTNRECTMMGFNCKMSEYAAAIGIATMKKWDD-KLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE-- 297 (377)
T ss_dssp CTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT--
T ss_pred CCCCceeeccccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC--
Confidence 34555677777777777766544 77888899999999999886542 211111 112 23444443
Q ss_pred HHHHHHHHHHHHhcCceeccCC-------------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKLEEHGVLVMPES-------------------------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ~~~~~~~~~~l~~~gi~~~~~~-------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+++.+.|.++||.+.... ...||+++++.++++|++++++.|++++...
T Consensus 298 ~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 298 EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 1247899999999999873321 1259999999999999999999998887654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=244.00 Aligned_cols=323 Identities=19% Similarity=0.165 Sum_probs=232.1
Q ss_pred CccccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 1 ~~~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
|...++|+..+.+. ..+++.+++.+..... .|..++...++|+.++++++.+..++++||++|+..++.++..++||+
T Consensus 1 m~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~ 78 (373)
T 3frk_A 1 MKISFASFKPMHDE-IEYEIKFKFEEIYKRN-WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDE 78 (373)
T ss_dssp CCBCSCCCHHHHHH-HHHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcccCCCcccCC-CCHHHHHHHHHHHHCC-CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCE
Confidence 34455555543222 2366777776543222 366778999999999999999988999999999999999983369999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
|+++.++|.+... .+...|++++.++.+ +++.+|++++++.++ +++++|++ +||||...+ +
T Consensus 79 Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~--------~~~~~v~~----~n~~G~~~~---l 140 (373)
T 3frk_A 79 VIVPSNTFIATAL---AVSYTGAKPIFVEPDIRTYNIDPSLIESAIT--------EKTKAIIA----VHLYGQPAD---M 140 (373)
T ss_dssp EEEETTSCTHHHH---HHHHHSCEEEEECEETTTTEECGGGTGGGCC--------TTEEEEEE----ECCTTCCCC---H
T ss_pred EEECCCCcHHHHH---HHHHcCCEEEEEeccccccCcCHHHHHHhcC--------CCCeEEEE----ECCCcCccc---H
Confidence 9999999998765 266778899999776 568889999999998 67888873 348999766 8
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc--ccCCC-ceeeEEec-CHHHHHHHHHHHHhh-
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS--KGLGA-PVGSVIVG-SKEFIKKARRLRKTL- 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~-~~gg~~~~-~~~~~~~~~~~~~~~- 234 (359)
++|.++|+++|+++|+|++|+.|.. ..+.. +....|++++|++ |++++ +.||+++. ++++.+.++......
T Consensus 141 ~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~---~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~ 216 (373)
T 3frk_A 141 DEIKRIAKKYNLKLIEDAAQAHGSL-YKGMK---VGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGS 216 (373)
T ss_dssp HHHHHHHHHHTCEEEEECTTCTTCE-ETTEE---TTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTC
T ss_pred HHHHHHHHHcCCEEEEECCcccCCE-ECCEe---ccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCc
Confidence 9999999999999999999877654 22222 2223688888855 99987 55677776 466777776655422
Q ss_pred ---------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc--ceEEEEEeccchHHH
Q 018243 235 ---------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE--TNIVYFEITEDSKLY 303 (359)
Q Consensus 235 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ 303 (359)
+.++...+..+++....++... +..++..++.+++.+.|++++ +.+...+.. ..+..+.+... +
T Consensus 217 ~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---~ 291 (373)
T 3frk_A 217 EKKYHHIYKGFNSRLDELQAGFLRVKLKYLD-KWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE---K 291 (373)
T ss_dssp SBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES---S
T ss_pred ccCCccccccccCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC---C
Confidence 2233345555555555554443 377788888999999999884 654222211 22222333321 5
Q ss_pred HHHHHHHHHhcCceeccCCC---------------------------cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVMPESS---------------------------TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~~~~~---------------------------~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+++.+.|.++||.+.+... ..+|+++++.++++|+++++++|+++..+
T Consensus 292 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 292 RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 77899999999998864321 57999999999999999999999876654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=243.35 Aligned_cols=323 Identities=18% Similarity=0.173 Sum_probs=223.1
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC------CCCccCCChHHHHHHHHHHHHh----CCC-CeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV------DDDVLMHDPTAFRLETEMAKVM----GKE-AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~~~~gt~a~~~~l~ 71 (359)
.+|||.++.+..+. |.+.+++.+... +...|+..++..++++.+++++ +.+ ..+++++|+.+++.++.
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l~ 136 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQ 136 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHHH
Confidence 57999998776544 788887766432 2234555667799999999997 443 34555555554455566
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCC------------ccceeeecCCC--CCCCHHHHHHHhcCCCCCccCCce
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQD--GTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
.++ ++||.|++++|+|.+... + +...| .+++.++.+.. ...+++. . +++
T Consensus 137 ~l~-~~gd~Vl~~~p~y~~~~~-~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~--------~~~ 199 (432)
T 3ei9_A 137 VMF-GSNVTIAVQDPSYPAYVD-S--SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V--------GRT 199 (432)
T ss_dssp HHH-CTTCCEEEEESCCTHHHH-H--HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C--------CCC
T ss_pred HHc-CCCCEEEEeCCCCHHHHH-H--HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C--------CCC
Confidence 666 599999999999988654 2 33334 35666765533 2233221 1 578
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCccEEEEeccccCCCce-e
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~d~~~~s~~K~~g~~~-g 214 (359)
++|++++ ++||||.+++.+++++|+++|++||+++|+||+|..+.......+...+. .+.++++.|+||+||.++ .
T Consensus 200 ~~v~l~~-p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r 278 (432)
T 3ei9_A 200 DIIFFCS-PNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVR 278 (432)
T ss_dssp SEEEEES-SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTC
T ss_pred CEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccc
Confidence 8999865 56799999999999999999999999999999987544332222333332 133466779999998543 2
Q ss_pred -eEEecCHHH--------HHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 215 -SVIVGSKEF--------IKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 215 -g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
|++++++++ .+.+.........+. +...+.++..++. .+.++.++++.++++++.+.|+++ |++
T Consensus 279 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 355 (432)
T 3ei9_A 279 LGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGA--SNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD 355 (432)
T ss_dssp CEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCS--CHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred eEEEEEChHHhhcchHHHHHHHHHHhccccCCC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence 888887776 666665544433333 3333444444432 334557777889999999999998 888
Q ss_pred EecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 282 VDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.. +..++++|+.++. .+..++.+.| +++||.+.|+ +..++|+++ ..+++++++++++|++--+..
T Consensus 356 ~~~-~~~~~~~~~~~~~---~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~~~~ 428 (432)
T 3ei9_A 356 VYG-GKNAPYVWVHFPN---QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLYKHH 428 (432)
T ss_dssp EEE-CSSSSEEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHTTS
T ss_pred ecC-CCcceEEEEECCC---CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHhhhc
Confidence 753 3478899999874 3666777877 5679999764 367899998 579999999999998765543
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=234.29 Aligned_cols=325 Identities=14% Similarity=0.119 Sum_probs=228.0
Q ss_pred ccccccccCCCCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCC------CeEEcCCchHHHHHHHHHh
Q 018243 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKE------AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 2 ~~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~------~~~~~~~gt~a~~~~l~~~ 73 (359)
.|+.+.|..+ +..++|++.+++.+..... +.+ .....++++.++++++.. ..++++||++++..++..+
T Consensus 3 ~~~~~~~~p~-p~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~ 79 (385)
T 2bkw_A 3 KSVDTLLIPG-PIILSGAVQKALDVPSLGH--TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNF 79 (385)
T ss_dssp CCCCEECSSS-SCCCCHHHHHTTSCCCCCT--TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHH
T ss_pred CccceeecCC-CcCchHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHH
Confidence 3556666665 4455689999998754332 211 124577889999998874 3477888999999999988
Q ss_pred hh--hcCCeEEecCC-CcceeeccccccccCCccceeeec-CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 74 CE--TRGSEVILGDN-SHIHIYENGGISTIGGVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 74 ~~--~~g~~vl~~~~-~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
.. ++|++|+++++ .|..... ..+...|++++.++. +.++.+|+++|++.+++ .++++|++++ ++||
T Consensus 80 ~~~~~~gd~vlv~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~~v~~~~-~~np 149 (385)
T 2bkw_A 80 ILSKAPNKNVLVVSTGTFSDRFA--DCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-------NSYGAVTVTH-VDTS 149 (385)
T ss_dssp SCTTCSCCEEEEECSSHHHHHHH--HHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-------SCCSEEEEES-EETT
T ss_pred hccCCCCCeEEEEcCCcchHHHH--HHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-------CCCCEEEEEc-cCCC
Confidence 62 48999987744 4333322 235677889999988 77888999999999982 2788998855 5569
Q ss_pred CceecChhhHHHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH-
Q 018243 150 GGRCLSVEYTDSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK- 225 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~- 225 (359)
||.+.+ +++|.++|++| |+++|+|++|+++... .....+ +.|+++.|+||+++++.| |+++.+++.++
T Consensus 150 tG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 150 TAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEE---FEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDY 221 (385)
T ss_dssp TTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSC---CCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHH
T ss_pred cCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCcc---cccccc--CceEEEecCccccccCCcceEEEEcHHHHHH
Confidence 999988 78999999999 9999999998765432 122222 578999999998876666 88888888766
Q ss_pred HHH------------------HH-HHhh-C--CC-cchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHH-hcC
Q 018243 226 KAR------------------RL-RKTL-G--GG-MRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGL-NQL 277 (359)
Q Consensus 226 ~~~------------------~~-~~~~-~--~~-~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l-~~~ 277 (359)
.++ .. .... + .. ...+.....++..+++. ..+...+++.++++++.+.| +++
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 431 11 1111 1 00 11122222333333322 24446777889999999999 888
Q ss_pred CCceEecCC----ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcEEEEE-eC---CCCCHHHHHHHHH
Q 018243 278 KGLRVDVDA----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STRVRIV-VH---HQISANDVHYTLS 344 (359)
Q Consensus 278 ~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lRi~-~~---~~~~~~~i~~~~~ 344 (359)
++++..+. ..++++++.++. ..++.+.|.++||.+.++. ..++|++ +. ..+++++++++++
T Consensus 302 -g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~ 375 (385)
T 2bkw_A 302 -QLTSVSRYPSNMSAHGLTAVYVAD-----PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFD 375 (385)
T ss_dssp -CCEESSCSSSTTBCSSCEEEECSC-----HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred -CceecccCcccccCCceEEEecCC-----HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHH
Confidence 88875322 246788888753 5678899988999997753 4689999 54 2479999999999
Q ss_pred HHHHHHHHH
Q 018243 345 CFQKIYAGV 353 (359)
Q Consensus 345 ~l~~~~~~~ 353 (359)
+|+++++++
T Consensus 376 ~l~~~~~~~ 384 (385)
T 2bkw_A 376 LIKLALQRK 384 (385)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999987654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=236.75 Aligned_cols=328 Identities=15% Similarity=0.129 Sum_probs=226.2
Q ss_pred ccccccCC---CCCC-hHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh-
Q 018243 4 RTVDLRSD---TVTK-PTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE- 75 (359)
Q Consensus 4 ~~id~~~~---~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~- 75 (359)
.+|||.++ +..+ ++|.+.+++.+.......+ ...+...++++.++++++.+..++++||++|+..++..+..
T Consensus 66 ~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~ 145 (433)
T 1z7d_A 66 RYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKW 145 (433)
T ss_dssp EEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 57899884 2223 6688988887754332211 13566789999999999988889999999999999998652
Q ss_pred -------hcC-CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 76 -------TRG-SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 76 -------~~g-~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
.+| ++|++.+++|..... ......+ ..+..++.+ |+++|++.++. +
T Consensus 146 ~~~~~g~~~gr~~vi~~~~~yhg~~~--~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~-------~ 211 (433)
T 1z7d_A 146 GYEVKKIPENMAKIVVCKNNFSGRTL--GCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD-------P 211 (433)
T ss_dssp HHHTSCCCTTCCEEEEETTC----------------------------CEEEECTT-----CHHHHHHHHTS-------T
T ss_pred hhhccCCCCCCCeEEEEeCCcCCcch--hhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC-------C
Confidence 256 889999987755433 1133333 234444443 89999999952 6
Q ss_pred ceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCc
Q 018243 136 TTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~ 212 (359)
++++|++++. ++++|.. ++.+++++|+++|++||+++|+||+|. + +...+.. .......+|++ |++|+++++
T Consensus 212 ~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~~~~di~--t~sK~l~~G 286 (433)
T 1z7d_A 212 NVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNVKPDVI--LLGKALSGG 286 (433)
T ss_dssp TEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence 7889888665 4468975 678899999999999999999999985 2 2222321 11222246765 778999754
Q ss_pred --eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecC
Q 018243 213 --VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVD 285 (359)
Q Consensus 213 --~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~ 285 (359)
..|++++++++++.+... ..+.++..+++.++++..+++...+ +..++..++.+++.+.|+++ |.+...
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-- 362 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDV-- 362 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTT--CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE--
T ss_pred CCCeEEEEECHHHHhhhccc--cccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--
Confidence 247888898887765321 2344455566777777777764432 35566777888888888764 322222
Q ss_pred CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 286 AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+..+.++++.++.. ..+..++.+.|.++||.+.+++..++|++++..++++++++++++|+++++++.+
T Consensus 363 ~~~g~~~~i~~~~~-~~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 363 RGKGLLCAIEFKNE-LVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431 (433)
T ss_dssp EEETTEEEEEECTT-TCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred EeeeeEEEEEEccC-hhHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888752 1246789999988999999877889999998889999999999999999887643
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=237.57 Aligned_cols=328 Identities=15% Similarity=0.116 Sum_probs=233.1
Q ss_pred cccccccCCCC---CC-hHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSDTV---TK-PTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~~~---~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
..+|||.++.. .+ ++|++.+++.+.......+ ...+...++++.+++++|.+..++++||++|+..++..++.
T Consensus 76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~ 155 (439)
T 2oat_A 76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARK 155 (439)
T ss_dssp CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35789988532 22 6689999988754432211 13456789999999999988789999999999999998762
Q ss_pred --------hcC-CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 76 --------TRG-SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 76 --------~~g-~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
.+| ++|++.+++|..... ......| ..++.++.+ |+++|++.+++
T Consensus 156 ~~~~~~g~~~g~~~vi~~~~~yhg~~~--~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~------- 221 (439)
T 2oat_A 156 WGYTVKGIQKYKAKIVFAAGNFWGRTL--SAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD------- 221 (439)
T ss_dssp HHHHTTCCCTTCCEEEEETTCCCCSSH--HHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS-------
T ss_pred HhhhccCCCCCCCeEEEEcCCCCCCCH--hHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC-------
Confidence 145 789988887655443 1133333 344455543 89999999952
Q ss_pred CceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCC
Q 018243 135 PTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGA 211 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~ 211 (359)
+++++|++++. ++++|. .++.+++++|.++|++||+++|+||+|. | +...+.. .......+|++ |++|.+++
T Consensus 222 ~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-~g~~g~~~~~~~~~~~~Di~--t~sK~l~~ 296 (439)
T 2oat_A 222 PNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G-LARTGRWLAVDYENVRPDIV--LLGKALSG 296 (439)
T ss_dssp TTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCCSEE--EECGGGGT
T ss_pred CCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CccCCcchhHHHhCCCCcEE--EecccccC
Confidence 57888888655 447896 5688999999999999999999999984 2 2222321 12222246765 77899976
Q ss_pred c--eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEe-cCCc
Q 018243 212 P--VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVD-VDAV 287 (359)
Q Consensus 212 ~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~ 287 (359)
+ .+|++++++++++.+... ..+.++..+++.++++..+++...+ ...++..++.+++++.|+++ ++.+. ..+.
T Consensus 297 G~~~~G~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~ 373 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRG 373 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEE
T ss_pred CCCCeEEEEECHHHHhccCCC--CcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEe
Confidence 4 247888888887765321 2344555566777777777765433 35667888899999999887 44321 1134
Q ss_pred cceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+.++++.++...+.+..++.+.|.++||.+.+.+..++|++++..++++++++++++|++++++
T Consensus 374 ~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 374 KGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp ETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 67888888865210246789999988999999987889999998889999999999999998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=241.38 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=226.9
Q ss_pred ccccccCC---CCCC-hHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhh
Q 018243 4 RTVDLRSD---TVTK-PTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 4 ~~id~~~~---~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++||.++ ++.+ ++|++.+++.+....... ....+...++++.+++++|.+..++++||++|+..++..+...
T Consensus 41 ~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~ 120 (397)
T 2ord_A 41 AYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKY 120 (397)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 46899876 4443 457888887764322111 1134678999999999999877889999999999999887631
Q ss_pred -----c-CCeEEecCCCcceeeccccccccCCcc------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 77 -----R-GSEVILGDNSHIHIYENGGISTIGGVH------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 77 -----~-g~~vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
+ +++|++.+++|.+... ......|.+ ++.++.+ |+++|++.++ ++++
T Consensus 121 ~~~~~~~~~~vi~~~~~yh~~~~--~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~--------~~~~ 185 (397)
T 2ord_A 121 GKKKSEKKYRILSAHNSFHGRTL--GSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMS--------EDVC 185 (397)
T ss_dssp HHHHCTTCCEEEEEBTCCCCSSH--HHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCC--------TTEE
T ss_pred hhcCCCCCceEEEEcCCcCCCch--hhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhh--------cCeE
Confidence 4 4678888887655443 124444544 4445543 8999999998 6899
Q ss_pred EEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCcee-
Q 018243 139 LICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAPVG- 214 (359)
Q Consensus 139 ~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~~g- 214 (359)
+|++++ ++||||. +++.+++++|.++|++||+++|+||+|. + +...+. ....+...+|++ |+||+++++.+
T Consensus 186 ~v~~~~-~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~ 260 (397)
T 2ord_A 186 AVFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPI 260 (397)
T ss_dssp EEEECS-EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCC
T ss_pred EEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhCCCCCee--eeccccCCCcCe
Confidence 999966 6679999 8999999999999999999999999985 2 222222 222332246765 66899985433
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC----CCceEecCCccc
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVET 289 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~ 289 (359)
|+++.++++. .++.. ..+.++..++..++++..+++... ++..++..++++++.+.|+++ +.+... +..+
T Consensus 261 G~~~~~~~~~-~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g 335 (397)
T 2ord_A 261 GAVIVNERAN-VLEPG--DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV--RGMG 335 (397)
T ss_dssp EEEEECSTTC-CCCTT--SSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE--EEET
T ss_pred EEEEEchHhc-ccCCC--CcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE--EEEe
Confidence 6677776665 43211 223344445666666666665432 235667778888888888764 222211 2367
Q ss_pred eEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+++++.++.. .+..++.+.|.++||.+.+++..++|++++...+++++++++++|++++++
T Consensus 336 ~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 336 LMIGIQFREE--VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TEEEEEECTT--SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCh--HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 8888888652 257789999988999999988889999988789999999999999988764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=240.38 Aligned_cols=319 Identities=19% Similarity=0.201 Sum_probs=228.9
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
++|....+..+ +++.+++.+..... .|. .++...++++.++++++.+..++++||++|+..++..+..++|++|+++
T Consensus 25 ~~l~~~~p~~~-~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~ 102 (391)
T 3dr4_A 25 PRISVAAPRLD-GNERDYVLECMDTT-WISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVP 102 (391)
T ss_dssp ---CCCCCCCC-SSHHHHHHHHHHHT-CCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred ceeccCCCCCC-HHHHHHHHHHHHcC-CccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence 44444444333 55555555533222 344 6789999999999999999889999999999999999833699999999
Q ss_pred CCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
.++|.+... .+...|.+++.++.+ +++.+|+++|++.++ +++++|++ +||||...+ +++|.
T Consensus 103 ~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~v~~----~n~tG~~~~---~~~i~ 164 (391)
T 3dr4_A 103 SLTYIASAN---SVTYCGATPVLVDNDPRTFNLDAAKLEALIT--------PRTKAIMP----VHLYGQICD---MDPIL 164 (391)
T ss_dssp SSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCGGGSGGGCC--------TTEEEECC----BCGGGCCCC---HHHHH
T ss_pred CCchHHHHH---HHHHCCCEEEEEecCccccCcCHHHHHHhcC--------CCceEEEE----ECCCCChhh---HHHHH
Confidence 999988764 367789999999877 568899999999988 67888874 348999766 89999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEe--ccccCCCceeeEEec-CHHHHHHHHHHHHhh------
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGAPVGSVIVG-SKEFIKKARRLRKTL------ 234 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s--~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~~------ 234 (359)
++|+++|+++|+|++|+.|... .+..... ..|+.++| .+|+++++.||+++. ++++.+.++......
T Consensus 165 ~l~~~~~~~li~D~a~~~g~~~-~~~~~~~---~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~ 240 (391)
T 3dr4_A 165 EVARRHNLLVIEDAAEAVGATY-RGKKSGS---LGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRR 240 (391)
T ss_dssp HHHHHTTCEEEEECTTCTTCEE-TTEETTS---SSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTST
T ss_pred HHHHHcCCEEEEECcccccceE-CCeeecc---cCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999998765543 2222111 23555555 669998666676665 566777776554321
Q ss_pred ------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC--Cc----cceEEEEEeccchHH
Q 018243 235 ------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AV----ETNIVYFEITEDSKL 302 (359)
Q Consensus 235 ------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~----~~~~~~~~~~~~~~~ 302 (359)
+.++......+++....++.. ++..++..++++++.+.|+++ ++.+... +. ....+++.++...+.
T Consensus 241 ~~~~~~g~~~~~~~l~aa~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 318 (391)
T 3dr4_A 241 YWFPIVGFNYRMTNIQAAIGLAQLERV-DEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST 318 (391)
T ss_dssp TCCSSCCCBCBCCHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS
T ss_pred ccccccccccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch
Confidence 112344555555555555443 337778888899999999998 8876433 11 122356666541134
Q ss_pred HHHHHHHHHHhcCceeccCC------------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPES------------------------STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~~------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.+++.+.|.++||.+.++. ...+|++++..++++|+++++++|++++
T Consensus 319 ~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 319 TRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 68899999999999986653 3469999999999999999999998764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=244.81 Aligned_cols=324 Identities=16% Similarity=0.134 Sum_probs=223.6
Q ss_pred ccccccCCCCCCh-HHHHHHHHHcCCC------CCCccCCChHHHHHHHHHHHHh----CCC-Ce-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKP-TEAMRAAMASAEV------DDDVLMHDPTAFRLETEMAKVM----GKE-AG-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~-~~~~~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~----~~~-~~-~~~~~gt~a~~~~l 70 (359)
.+|||.++....+ +|.+.+++.+... ....|+..++..++++.+++++ +.+ .. ++++|+++++..+
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~- 148 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI- 148 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-
Confidence 5799999876654 3778777766433 2234666677899999999998 433 23 4555555555555
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCcc----------ceeeecCCCC--CCCHHHHHHHhcCCCCCccCCcee
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVH----------PRTVKNNQDG--TMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
..++ ++||+|++++|+|.+... .+...|.+ ++.++.+.++ ..++++ . ++++
T Consensus 149 ~~l~-~~gd~Vl~~~p~~~~~~~---~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~ 211 (449)
T 3qgu_A 149 QMMF-GSKPTVAVQDPSYPVYVD---TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSK------A-------KRTD 211 (449)
T ss_dssp HHHH-CSSSCEEEEESCCTHHHH---HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGG------C-------CCCS
T ss_pred HHHh-CCCCEEEEcCCCChhHHH---HHHHcCCcccccccccceeEEEecccccCCcCChhH------c-------CCCC
Confidence 6666 599999999999887654 36666767 7777765432 223221 0 4688
Q ss_pred EEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhh--cCccEEEEeccccCCCce-e
Q 018243 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLV--QAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~--~~~d~~~~s~~K~~g~~~-g 214 (359)
+|++++ ++||||.+++.+++++|+++|++||+++|+||+|..+..... ..+...+. .+.++++.|+||++|.++ +
T Consensus 212 ~v~l~~-p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 290 (449)
T 3qgu_A 212 IIFFCS-PNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVR 290 (449)
T ss_dssp EEEEES-SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCC
T ss_pred EEEEeC-CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccce
Confidence 999975 567999999999999999999999999999999865433211 11233332 234466779999998543 2
Q ss_pred -eEEecCHHHHH--------HHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 215 -SVIVGSKEFIK--------KARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 215 -g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
|++++++++++ .+.........+. +...+.++..+++ ...++.++++.++++++.+.|+++ |++
T Consensus 291 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 367 (449)
T 3qgu_A 291 LGWTVVPKALKYANGEPVHADWNRVMTTCFNGA--SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFS 367 (449)
T ss_dssp CEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCC--CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred eEEEecCHHHHhhhhhhHHHHHHHHhhcccCCC--CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 88888877654 3333333222222 3444444444443 234457777889999999999998 888
Q ss_pred EecCCccceEEEEEeccchHHHHHHHHHHHH-hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 282 VDVDAVETNIVYFEITEDSKLYAACLLKKLE-EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.. +..++++|+.++. .+..++.+.|. ++||.+.|+ +..++||++ ..+++++++++++|++++++-.
T Consensus 368 ~~~-~~~~~~~~~~~~~---~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 368 VYG-GDDAPYIWVGFPG---KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASA--FGSRENILEAVRRFKEAYGKRN 441 (449)
T ss_dssp EEE-SSSSSEEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHC---
T ss_pred eeC-CCCeeEEEEECCC---CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHHhcC
Confidence 753 4568899999873 46778888885 569999765 357899997 4699999999999999987654
Q ss_pred h
Q 018243 355 E 355 (359)
Q Consensus 355 ~ 355 (359)
.
T Consensus 442 ~ 442 (449)
T 3qgu_A 442 A 442 (449)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=233.25 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=208.6
Q ss_pred hHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCC
Q 018243 38 PTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 114 (359)
+...++++.+++++|.+. .++++||++|+..++.++.. + .+++..+.|++... ...++..|++++.++.+.++
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~-~--~~i~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~ 118 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE-K--KSFHCVNGSFSKRF-YEFAGELGREAYKEEAAFGK 118 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS-S--EEEEEECSHHHHHH-HHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC-C--cEEEEcCcHHHHHH-HHHHHHhCCCeEEEecCCCC
Confidence 446788899999998842 46778889999999998883 5 55555554455221 12356778899999888788
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc-CcEEEEecccccchhhhcCchhHh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH-GLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
.+|+++|+ ++ +++++|+++++ +||||.++| +++|.++|++| |+++|+|++|+++... . +
T Consensus 119 ~~d~~~l~--~~--------~~~~~v~~~~~-~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~---~---~ 178 (362)
T 3ffr_A 119 GFYPADIT--VP--------ADAEIICLTHN-ETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK---F---D 178 (362)
T ss_dssp CCCGGGCC--CC--------TTCCEEEEESE-ETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC---C---C
T ss_pred CCCHHHHh--cc--------CCccEEEEEcC-CCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc---c---C
Confidence 89999988 44 78999999765 669999998 78899999999 9999999998665432 1 1
Q ss_pred hhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh--------------------h-CCCcchhHHHHHHHHHH
Q 018243 194 LVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT--------------------L-GGGMRQVGVLCAAALVA 251 (359)
Q Consensus 194 ~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~ 251 (359)
+. ..|+++.|+||+++++.| |+++.++++.+.++..... . ..+. +.....+...+
T Consensus 179 ~~-~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a 255 (362)
T 3ffr_A 179 WT-KIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETP--NAMNIFLLGKV 255 (362)
T ss_dssp TT-SCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCC--CHHHHHHHHHH
T ss_pred hh-HCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCc--hHHHHHHHHHH
Confidence 11 278999999999996566 8888899988887765430 0 1111 22222222233
Q ss_pred HH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC---ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---
Q 018243 252 LQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA---VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--- 321 (359)
Q Consensus 252 l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--- 321 (359)
++ ...++.+++..++++++.+.|+++||+++..+. ....++++.++. +..++.+.|.++||.+.++
T Consensus 256 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g~~~ 331 (362)
T 3ffr_A 256 TGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM----LPGEINKILEPFDMAVGAGYGS 331 (362)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS----CHHHHHHHHGGGTEEEEECSGG
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC----CHHHHHHHHHHCCeEEecCccc
Confidence 32 224557778889999999999999999875422 235567777764 6779999998889999764
Q ss_pred -CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 -SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 -~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+.+++|++++..++++++++++++|++++
T Consensus 332 ~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 332 KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46789999988899999999999998764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=233.31 Aligned_cols=329 Identities=19% Similarity=0.173 Sum_probs=231.7
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC--c------cCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD--V------LMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~ 71 (359)
+++|.+.++. +|.+.+++.+...... . |...+...+++ +.+++++|.+.. +++++|++|+..++.
T Consensus 26 ~~~~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~ 103 (405)
T 2vi8_A 26 IELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYF 103 (405)
T ss_dssp EECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred eeeccCcccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHH
Confidence 4677666554 6889999987653111 1 22234455555 689999999876 457899999999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCc--cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGV--HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
+++ ++|++|+++.++|.+....+......|. +++.++.+ .++.+|+++|++.+++ .++++|++ +++++
T Consensus 104 ~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~-~~~~~ 174 (405)
T 2vi8_A 104 TVL-EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL-------HRPKLIVA-AAAAY 174 (405)
T ss_dssp HHC-CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-------HCCSEEEE-CCSSC
T ss_pred Hhc-CCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh-------cCCeEEEE-eCCCC
Confidence 987 5999999999998776531111223343 56666654 5678899999999982 26788887 44442
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
|... ++++|.++|++||+++|+|++|+++.... +.....+ ...|+++.|+||+++++.||++++++++.+.++
T Consensus 175 --~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~l~ 247 (405)
T 2vi8_A 175 --PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNPV-PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQID 247 (405)
T ss_dssp --CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCST-TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHH
T ss_pred --CccC---CHHHHHHHHHHcCCEEEEEcccccccccc-CcCCCcc-ccCCEEEEeccccCCCCCCeEEEEcHHHHHHHH
Confidence 4433 48999999999999999999987654432 2111112 257888889999998667799999999888876
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.....+..+.. +....++...+++ ...++.+++..++++++.+.|+++ |+++..++..++++++.++. .+.+.
T Consensus 248 ~~~~~~~~~~~-~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~ 324 (405)
T 2vi8_A 248 KAIFPGIQGGP-LMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP-QQLTG 324 (405)
T ss_dssp HHHTTTTCSSC-CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCCH
T ss_pred hhhcccccCCC-CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC-CCCCH
Confidence 65433322221 2222222233332 344557788889999999999998 88875443467889998874 22357
Q ss_pred HHHHHHHHhcCceeccC----------CCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPE----------SSTRVRIVVHH----QISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~----------~~~~lRi~~~~----~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++.+.|.++||.+.++ ..+++|++++. .++++++++++++|+++++++.
T Consensus 325 ~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 325 KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp HHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 78899999999998764 24679999874 4789999999999999987664
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=237.05 Aligned_cols=334 Identities=13% Similarity=0.122 Sum_probs=225.2
Q ss_pred cccccccCCCCCC-hH--HHHHHHHHcCCCCC------CccCCChHHHHHHHHHHHHh------CCC--CeEEcCCchHH
Q 018243 3 TRTVDLRSDTVTK-PT--EAMRAAMASAEVDD------DVLMHDPTAFRLETEMAKVM------GKE--AGLFVPSGTMG 65 (359)
Q Consensus 3 ~~~id~~~~~~~~-~~--~~~~~a~~~~~~~~------~~~~~~~~~~~l~~~la~~~------~~~--~~~~~~~gt~a 65 (359)
+.+|||..+.+.. |. +.+.+++.+...+. ..|+..++..++++.+++++ +.+ ..++++||++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~a 110 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSA 110 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHH
Confidence 4678999987765 32 66777776643222 24777778899999999997 232 34778888899
Q ss_pred HHHHHHHhhhhcCC-----eEEec-CCCcceeecccc---ccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCC
Q 018243 66 NLISVLVHCETRGS-----EVILG-DNSHIHIYENGG---ISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 66 ~~~~l~~~~~~~g~-----~vl~~-~~~~~~~~~~~~---~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
+..++..++ ++|| +|+++ .|+|........ .....+..+..++.+ .++.+|+++++ ++ +
T Consensus 111 l~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~--------~ 179 (417)
T 3g7q_A 111 FFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG--------E 179 (417)
T ss_dssp HHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC--------T
T ss_pred HHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cc--------c
Confidence 999999887 4776 89987 888766543110 011123333334322 13557888887 55 6
Q ss_pred ceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-e
Q 018243 136 TTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-g 214 (359)
++++|+++++ +||||.+++.+++++|+++|++||+++|+|++|.................+.++++.|+||+ ++++ +
T Consensus 180 ~~~~v~~~~p-~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r 257 (417)
T 3g7q_A 180 ETGMICVSRP-TNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSR 257 (417)
T ss_dssp TEEEEEEESS-CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSC
T ss_pred CceEEEECCC-CCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhc-cCCCcc
Confidence 7899988555 56999999999999999999999999999999753211100001111112344667799995 4443 2
Q ss_pred -eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-----HhHHH-HhhhHHHHHHHHHHHHhc-CC--CceEec
Q 018243 215 -SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-----ENVLV-MLDGDHKKAKLLAEGLNQ-LK--GLRVDV 284 (359)
Q Consensus 215 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~~~~~~l~~~l~~-~~--g~~~~~ 284 (359)
||++.++++.+.+.......+.+.+... +.++...++ ....+ .++.+.++++.+.+.|++ ++ ++.+.
T Consensus 258 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~- 334 (417)
T 3g7q_A 258 CGIIIANDKTITAIANMNGIISLAPGGMG--PAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIH- 334 (417)
T ss_dssp CEEEECCHHHHHHHHHHHHHHCCCCCSHH--HHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEE-
T ss_pred eEEEEeCHHHHHHHHHhhcceeeCCCcHH--HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceee-
Confidence 8899999999998877776665543333 333333332 11221 344566677777777766 44 46664
Q ss_pred CCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 285 DAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-------------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+..+.++|+.++. .+.+..++.+.|.++||.+.++. ..++|++++ .+++++++++++|+++++
T Consensus 335 ~~~~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~ 411 (417)
T 3g7q_A 335 KPEGAIFLWLWFKD-LPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV--PEPDKIEAGVKILAEEIE 411 (417)
T ss_dssp CCCBSSEEEEECTT-CSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESC--SCHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEcCC-CCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 34578899999875 12477899999999999997642 468999997 399999999999999998
Q ss_pred HHHh
Q 018243 352 GVCE 355 (359)
Q Consensus 352 ~~~~ 355 (359)
++.+
T Consensus 412 ~~~~ 415 (417)
T 3g7q_A 412 RAWR 415 (417)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=236.64 Aligned_cols=324 Identities=17% Similarity=0.141 Sum_probs=223.8
Q ss_pred ccccccCC---CCC-ChHHHHHHHHHcCCCCC----CccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSD---TVT-KPTEAMRAAMASAEVDD----DVLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~---~~~-~~~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.++||.++ ++. .++|.+.+++.+..... ..| ..+...++++.++++++. +..++++||++|+..++..+
T Consensus 46 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~ 124 (395)
T 1vef_A 46 EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFA 124 (395)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHH
Confidence 46788775 333 36688888877643211 122 467889999999999954 34588899999999999876
Q ss_pred hh-hcCCeEEecCCCcceeeccccccccCCcccee---eecCCC----CCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 74 CE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRT---VKNNQD----GTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 74 ~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
.. .++++|++.+++|.+.+. ......|.+.+. ++...+ ...|+++|++.++ +++++|+++ +
T Consensus 125 ~~~~~~~~vi~~~~~y~~~~~--~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~-~ 193 (395)
T 1vef_A 125 RAHTGRKKFVAAMRGFSGRTM--GSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD--------EETAAVILE-P 193 (395)
T ss_dssp HHHHSCCEEEEETTCCCCSSH--HHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC--------TTEEEEEEC-S
T ss_pred HHHhCCCeEEEEcCCcCCCch--hhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc--------cCEEEEEEe-C
Confidence 41 378889998887655443 124445544211 011000 0138999999998 678898884 4
Q ss_pred ccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCcee-eEEecCH
Q 018243 146 HANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPVG-SVIVGSK 221 (359)
Q Consensus 146 ~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~ 221 (359)
.+||||... +.+++++|.++|++||+++|+|++|+ + +...+.. ........|++ |+||+++++.+ |+++.++
T Consensus 194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~ 269 (395)
T 1vef_A 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE 269 (395)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH
T ss_pred ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehH
Confidence 566899765 57889999999999999999999986 2 2222221 22222246765 77999986544 7788887
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCCCceE-ecCCccceEEEEEeccc
Q 018243 222 EFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLKGLRV-DVDAVETNIVYFEITED 299 (359)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~ 299 (359)
++++.++.. ..+.++..+...++++..+++... +...++..++++++.+.|+++ +..+ ...+..++++++.++.
T Consensus 270 ~~~~~l~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~g~~~~~~~~~- 345 (395)
T 1vef_A 270 EVARSMPKG--GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKE- 345 (395)
T ss_dssp HHHHTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTS-CCTTEEEEEEETTEEEEEESS-
T ss_pred HHHhhhccC--CcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCceEEEEEEEEEEEEEEcC-
Confidence 776665331 123344445566666666665432 235667778899999999887 3221 1113467888998875
Q ss_pred hHHHHHHHHHHHH-hcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLE-EHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 300 ~~~~~~~~~~~l~-~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+..++.+.|. ++||.+.+++..++|++++...+++++++++++|++++
T Consensus 346 ---~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 346 ---KAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ---CSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3567889997 99999999888899999988899999999999998875
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=238.10 Aligned_cols=326 Identities=16% Similarity=0.141 Sum_probs=220.3
Q ss_pred HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh-----CCC----CeEEcCCchHHHHHHHHHhhhhcCC----eEEe
Q 018243 18 EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM-----GKE----AGLFVPSGTMGNLISVLVHCETRGS----EVIL 83 (359)
Q Consensus 18 ~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~-----~~~----~~~~~~~gt~a~~~~l~~~~~~~g~----~vl~ 83 (359)
+.+.+++.+... ....|+...+..++++.+++++ |.+ ..++++|+++++..++..++ ++|| .|++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~~~d~Vlv 186 (498)
T 3ihj_A 108 KRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-SGGGKSRTGVMI 186 (498)
T ss_dssp HHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-CCCGGGSEEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-CCCCCCCCEEEE
Confidence 344444444321 2345777788888999988877 342 23666677778888888777 4654 9999
Q ss_pred cCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
+.|+|..... .+...|.+++.++.++ ++.+|+++|++.+++.... .++++|++++ ++||||.+++.+++++
T Consensus 187 ~~p~y~~~~~---~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~---~~~k~i~l~n-p~NPTG~v~s~~~l~~ 259 (498)
T 3ihj_A 187 PIPQYPLYSA---VISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH---CDPKVLCIIN-PGNPTGQVQSRKCIED 259 (498)
T ss_dssp EESCCTHHHH---HHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT---SEEEEEEEES-SCTTTCCCCCHHHHHH
T ss_pred eCCCchhHHH---HHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc---CCCeEEEEEC-CCCCCCCcCCHHHHHH
Confidence 9999877543 3677888999887654 4688999999999831100 1689999975 5679999999999999
Q ss_pred HHHHHHHcCcEEEEecccccchhhh--cCchhHhhh--------cCccEEEE-eccccC-CCc--eeeEEe---cCHHHH
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLV--------QAADSASV-CLSKGL-GAP--VGSVIV---GSKEFI 224 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~--------~~~d~~~~-s~~K~~-g~~--~gg~~~---~~~~~~ 224 (359)
|+++|++||++||+||+|..+.+.. ...++..+. ....++++ |+||.| |.+ .+||++ .++++.
T Consensus 260 i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~ 339 (498)
T 3ihj_A 260 VIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIK 339 (498)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHH
T ss_pred HHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHH
Confidence 9999999999999999976544321 122333321 12234555 999999 433 237776 689999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH----------HHh---HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL----------QEN---VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI 291 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 291 (359)
+.+...... ..+.+...+ .+....+ ..+ .+..++++.++++++.+.|+++||+++. ++..+.+
T Consensus 340 ~~l~~~~~~-~~~~~~~~q--~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~~ 415 (498)
T 3ihj_A 340 GQLVKLLSV-RLCPPVSGQ--AAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAMY 415 (498)
T ss_dssp HHHHHHHHH-SCCCCHHHH--HHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSE
T ss_pred HHHHHHHhc-cCCCCHHHH--HHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec-CCCeEEE
Confidence 988766553 222322222 2222222 122 2335677889999999999999998874 4457778
Q ss_pred EEEEeccchH---------HHHHHH--HHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 292 VYFEITEDSK---------LYAACL--LKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 292 ~~~~~~~~~~---------~~~~~~--~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+|+.+..+.. .+.+++ .+.|.++||.++|+ +..++|+++ ..+++++++++++|.++++++
T Consensus 416 ~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 416 AFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp ECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHH
Confidence 8877653211 123443 44558899999764 345799999 489999999999999999998
Q ss_pred Hhhc
Q 018243 354 CEEN 357 (359)
Q Consensus 354 ~~~~ 357 (359)
.++.
T Consensus 494 ~~~~ 497 (498)
T 3ihj_A 494 LEKY 497 (498)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=236.88 Aligned_cols=323 Identities=13% Similarity=0.080 Sum_probs=221.8
Q ss_pred cccccccCCCC------CChHHHHHHHHHcCC---CCCCccCCChHHHHHHHHHHHHh-CCC-------C--eEEcCCch
Q 018243 3 TRTVDLRSDTV------TKPTEAMRAAMASAE---VDDDVLMHDPTAFRLETEMAKVM-GKE-------A--GLFVPSGT 63 (359)
Q Consensus 3 ~~~id~~~~~~------~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~-~~~-------~--~~~~~~gt 63 (359)
...|||.-+.+ ..+.+.+.++.. .. .....|+...+..++++++++++ +.. . .+++++|+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35689987753 223477777754 21 23456888889999999999987 221 1 15667777
Q ss_pred HHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 64 MGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 64 ~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
+|+..++..+.. .+ |+|++++|+|.... ..++..|.+++.++. ++++.+|++.+++.+++. ++++++
T Consensus 108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~~~i 177 (405)
T 3k7y_A 108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHV---NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI------PNGSSV 177 (405)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEESSCCHHHH---HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS------CSSCEE
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCHhHH---HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC------CCCeEE
Confidence 788887777662 27 99999999977654 347888999999975 335789999999999731 356788
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC---chhHhhhc-CccEEEE-eccccCCCcee-
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG---VPVRRLVQ-AADSASV-CLSKGLGAPVG- 214 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~~-~~d~~~~-s~~K~~g~~~g- 214 (359)
++.+++|||||.+++.+++++|+++|++|++++|+||+|......... .+...+.. ...++++ |+||.|+.++.
T Consensus 178 ~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR 257 (405)
T 3k7y_A 178 ILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGER 257 (405)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTT
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcccc
Confidence 886666889999999999999999999999999999996432221000 12223322 2335554 99999986544
Q ss_pred -eEEe---cCHHHHHHHHH-HHH---hhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHh--
Q 018243 215 -SVIV---GSKEFIKKARR-LRK---TLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLN-- 275 (359)
Q Consensus 215 -g~~~---~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~-- 275 (359)
||++ .++++++.+.. +.. ....+. +...+.++...+ .+.+...++++.++++.+.+.|+
T Consensus 258 iG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~ 335 (405)
T 3k7y_A 258 AGALHIVCKNQEEKKIVFNNLCFIVRKFYSSP--VIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETY 335 (405)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCC--cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7754 47777665532 221 111121 222222222222 22233456678889999999999
Q ss_pred --cCCC----ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 276 --QLKG----LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 276 --~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++ | +++. ++.++.|+|+.++. +++++|.++||.+.|++ ||+++ ..+++++++++++|+++
T Consensus 336 ~~~~-g~~~~~~~~-~p~gg~f~~~~l~~-------~~~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~~~i~~~ 401 (405)
T 3k7y_A 336 QKKY-NLNYDWNVY-KKQRGLFSFVPLLA-------KIAEHLKTHHIYIINNG----RINVS-GITKNNVDYIADKICLS 401 (405)
T ss_dssp GGGG-TCCCCGGGG-SSCCSSEEECGGGG-------GGTTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHHHHHHHH
T ss_pred hhhc-CCCCCCccc-cCCceEEEecCCCH-------HHHHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHHHHHHHH
Confidence 76 4 4543 45677788876653 34466788999999976 99996 67899999999999998
Q ss_pred HHH
Q 018243 350 YAG 352 (359)
Q Consensus 350 ~~~ 352 (359)
+++
T Consensus 402 ~~~ 404 (405)
T 3k7y_A 402 LSQ 404 (405)
T ss_dssp HHC
T ss_pred Hhh
Confidence 864
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-31 Score=234.81 Aligned_cols=331 Identities=16% Similarity=0.128 Sum_probs=234.0
Q ss_pred cccccccCC---CCCC-hHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD---TVTK-PTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~---~~~~-~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ ++.+ ++|++.+++.+...... .....+...++++.++++++.+..++++||++|+..++..++.
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~ 118 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK 118 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 356899886 4433 35888888876543311 1224577899999999999998889999999999999998864
Q ss_pred h------cC-CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 T------RG-SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~------~g-~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
. +| ++|++.+++|..... ......+ .++..++. .|+++|++.++ ++
T Consensus 119 ~~~~~~~~g~~~vi~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~--------~~ 183 (406)
T 4adb_A 119 FAHDRYGSHKSGIVAFKNAFHGRTL--FTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALID--------DS 183 (406)
T ss_dssp HHHHHTCTTCCEEEEETTCCCCSSH--HHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCS--------TT
T ss_pred HHHhcCCCCCcEEEEECCCcCCCcH--HHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhc--------CC
Confidence 2 55 889999998776543 1122222 12333333 28999999888 78
Q ss_pred eeEEEEeccccCCCceec--ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCc
Q 018243 137 TRLICLENTHANCGGRCL--SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAP 212 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~--~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~ 212 (359)
+++|+++ + +||+|.++ +.+++++|.++|++||+++|+||+|+. +...+. .........|++ ++||.++++
T Consensus 184 ~~~v~~~-p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G 257 (406)
T 4adb_A 184 TCAVIVE-P-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTG--VGRTGELYAYMHYGVTPDLL--TTAKALGGG 257 (406)
T ss_dssp EEEEEEC-S-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHHHTCCCSEE--EECGGGGTT
T ss_pred eEEEEEe-C-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhHHHHhcCCCCCEE--EechhhcCC
Confidence 9999995 4 56888877 889999999999999999999999852 222222 222232345666 569999843
Q ss_pred e-eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcCC-Cce-EecCCcc
Q 018243 213 V-GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQLK-GLR-VDVDAVE 288 (359)
Q Consensus 213 ~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~-g~~-~~~~~~~ 288 (359)
. .|++++++++++.+.... .+.++..++..++++..+++... ++..++..++++++.+.|+++. .+. +...+..
T Consensus 258 ~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 335 (406)
T 4adb_A 258 FPVGALLATEECARVMTVGT--HGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGL 335 (406)
T ss_dssp SCCEEEEECHHHHHTCCTTS--SCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCeEEEEEcHHHHhhhccCC--cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 2 388999999887754332 23344456666666666665321 3366677788888888887751 111 1111235
Q ss_pred ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+.++++.++.....+..++.+.|.++||.+.+++..++|++++...+++++++++++|+++++++.++
T Consensus 336 g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 403 (406)
T 4adb_A 336 GLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVSR 403 (406)
T ss_dssp TTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888763112578899999889999999988999998888999999999999999999987653
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=234.94 Aligned_cols=329 Identities=17% Similarity=0.169 Sum_probs=233.4
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCC--CCccC------CChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVD--DDVLM------HDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~--~~~~~------~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l 70 (359)
++|||.++.... +|.+.+++.+.... ...|. ..+....++ +.+++++|.+.. +++++|++|+..++
T Consensus 24 ~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~ 102 (407)
T 2dkj_A 24 EGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVY 102 (407)
T ss_dssp TSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred cceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHH
Confidence 568888876666 78999999876532 12222 122222333 489999998876 77899999999999
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--C-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--N-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
..+. ++|++|++++++|.+.+.....+...|..+..++. + .++.+|+++|++.+++ .++++|++ +.++
T Consensus 103 ~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~~v~~-~~p~ 173 (407)
T 2dkj_A 103 MALM-EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE-------HRPKVIVA-GASA 173 (407)
T ss_dssp HHHC-CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH-------HCCSEEEE-CCSS
T ss_pred HHhc-CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh-------cCCeEEEE-eccc
Confidence 9886 59999999999988764211224555654444433 3 3678899999999983 37888888 4455
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC-HHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS-KEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~-~~~~~~ 226 (359)
|| ...+ +++|.++|++||+++|+|++|+.|... .+.....+ ...|+++.|+||+++++.+|+++++ +++.+.
T Consensus 174 ~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~-~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~ 246 (407)
T 2dkj_A 174 YP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVA-AGLHPNPL-PYAHVVTSTTHKTLRGPRGGLILSNDPELGKR 246 (407)
T ss_dssp CC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHH-TTCSCCCT-TTCSEEEEESSGGGCCCSCEEEEESCHHHHHH
T ss_pred cC--CCCC---HHHHHHHHHHcCCEEEEEccccccccc-cCccCCcc-ccccEEEEeccccCCCCCceEEEECCHHHHHH
Confidence 55 4444 899999999999999999998764432 22211112 2478888999999977777888888 899888
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
++.....+..+.. +....+++..+++ ...++..++..++++++.+.|+++ |+++..++..++++++.++. .+.
T Consensus 247 l~~~~~~~~~~~~-~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~ 323 (407)
T 2dkj_A 247 IDKLIFPGIQGGP-LEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRP-KGL 323 (407)
T ss_dssp HHHHHTTTTCSSC-CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTC
T ss_pred HHhhhcccccCCC-cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcc-cCC
Confidence 7765543332221 2222223333332 344557778889999999999998 88875444578889998874 223
Q ss_pred HHHHHHHHHHhcCceeccCC----------CcEEEEEeCC----CCCHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVMPES----------STRVRIVVHH----QISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~~~~----------~~~lRi~~~~----~~~~~~i~~~~~~l~~~~~~ 352 (359)
+..++.+.|.++||.+.++. ..++|++++. ..+++++++++++|++++++
T Consensus 324 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 324 TGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 67789999999999987642 4679999864 27999999999999999887
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-30 Score=229.90 Aligned_cols=284 Identities=19% Similarity=0.209 Sum_probs=215.4
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+..++++||++|+..++.+++ ++||+|+++++.|.+.+... ..+...|++++.++.+
T Consensus 113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 187 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA---- 187 (445)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS----
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC----
Confidence 57789999999999999888999999999999999887 59999999999988765410 0255678888888765
Q ss_pred CCHHHHHHHhcCCCCCccCCce-eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTT-RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~-~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|+++|++.++ +++ ++|+++++ +||||.+.+ +++|.++|+++|+++|+|++|..+.. .. ++
T Consensus 188 -d~~~l~~ai~--------~~tv~lV~le~p-~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~---~~---~~ 248 (445)
T 1qgn_A 188 -DVGALELALN--------QKKVNLFFTESP-TNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN---QK---AL 248 (445)
T ss_dssp -CHHHHHHHHH--------HSCEEEEEEESS-CTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CC---TT
T ss_pred -CHHHHHHHhc--------cCCCCEEEEeCC-CCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc---CC---cc
Confidence 8999999998 677 99999665 559999987 89999999999999999999754322 11 12
Q ss_pred hcCccEEEEeccccCCCce---eeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
..++|+++.|+||++|++. +|++++++++++.+......++... ++..++++..+++.... ++++..++++++.
T Consensus 249 ~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~--~~~~a~~~~~~l~~l~~-r~~~~~~~a~~l~ 325 (445)
T 1qgn_A 249 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGAL--NPNAAYLIIRGMKTLHL-RVQQQNSTALRMA 325 (445)
T ss_dssp TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHGGGHHH-HHHHHHHHHHHHH
T ss_pred ccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCC--CHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH
Confidence 2378999999999998764 6899999999888877666666554 33444444555555433 6677778899999
Q ss_pred HHHhcCCCc-eEecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--------------
Q 018243 272 EGLNQLKGL-RVDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-------------- 321 (359)
Q Consensus 272 ~~l~~~~g~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------- 321 (359)
+.|++.|++ .+..+. ..+++++|.++.. ......+.+.|...++.+..|
T Consensus 326 ~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h 404 (445)
T 1qgn_A 326 EILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSY 404 (445)
T ss_dssp HHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHS
T ss_pred HHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-HHHHHHHHHhCCCceEeccCCCCceeeeccccccc
Confidence 999999887 443331 2577888998752 224667777775444433211
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.||++++ .|+++++++.|++++++
T Consensus 405 ~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 405 WDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp TTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 2468999995 46899999999998864
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=231.53 Aligned_cols=327 Identities=14% Similarity=0.105 Sum_probs=227.5
Q ss_pred cccccccCC---CCCC-hHHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD---TVTK-PTEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~---~~~~-~~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+++||.++ ++.+ .+|++.+++.+...... .....+...++++.++++++.+..++++||++|+..++..+..
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~ 115 (395)
T 3nx3_A 36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARK 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 357899887 2222 35888888877543211 1234677899999999999987789999999999999988763
Q ss_pred h------cCCeEEecCCCcceeeccccccccC------------CccceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 76 T------RGSEVILGDNSHIHIYENGGISTIG------------GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 76 ~------~g~~vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
. ++++|++.+++|..... ...... +.++..++.+ |+++|++.++ +++
T Consensus 116 ~~~~~g~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~--------~~~ 180 (395)
T 3nx3_A 116 YAFNKGVKGGQFIAFKHSFHGRTL--GALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVN--------EKT 180 (395)
T ss_dssp HHHHTTCTTCEEEEETTCCCCSSH--HHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCC--------TTE
T ss_pred HhhccCCCCCEEEEEcCCcCCCCH--HHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhcc--------CCe
Confidence 2 46889999988765432 112222 2234444443 8999999988 688
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eE
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SV 216 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~ 216 (359)
++|+++++++++++..++.+++++|.++|++||+++|+||+|...................|++ ++||.++++.+ |+
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~~G~ 258 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGCGLSVGA 258 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTTTSCCEE
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccCCCceEE
Confidence 9999988777555556788999999999999999999999975221111111112222234554 56798875434 78
Q ss_pred EecCHHH-HHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhc----CCCceEecCCccce
Q 018243 217 IVGSKEF-IKKARRLRKTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQ----LKGLRVDVDAVETN 290 (359)
Q Consensus 217 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~ 290 (359)
+++++++ .+.++.. ..+.++..+++.++++..+++... ++..++..++.+++++.|++ .|.+... +..++
T Consensus 259 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~g~ 334 (395)
T 3nx3_A 259 FVINQKVASNSLEAG--DHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR--KGLGF 334 (395)
T ss_dssp EEECHHHHHHHSCTT--CCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE--EEETT
T ss_pred EEEchhhhhhhcCCc--ccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE--EeEEE
Confidence 8889888 6665322 234445556677777777775432 22444555555555555544 4444432 34678
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++++.++.. .+..++.+.|.++||.+.+++..++|++++...+++++++++++|++++++
T Consensus 335 ~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 335 MQGLSLDKS--VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp EEEEEECTT--SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCc--chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 888888752 257789999999999999988899999998899999999999999998864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=233.17 Aligned_cols=312 Identities=16% Similarity=0.109 Sum_probs=222.1
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhhhcCC
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
..+|||.++.+. .++|++.+++.+.......|..... .++++.++++++.+ ..++++||++++..++..+. ||
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~---gd 90 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDA-GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR---GS 90 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTTC-HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT---TC
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC---CC
Confidence 357999988554 4559999999886633334544444 79999999999976 34666677778877777766 89
Q ss_pred eEEecCCCcceeeccccccccCCccceeeec-CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
+|+++.|+|.+... .++..|.+++.++. ++...+++ +++++|++++ ++||||.+++.++
T Consensus 91 ~Vi~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~~----------------~~~~~v~i~~-p~nptG~~~~~~~ 150 (350)
T 3fkd_A 91 RSLIAIPSFAEYED---ACRMYEHEVCFYPSNEDIGEADF----------------SNMDFCWLCN-PNNPDGRLLQRTE 150 (350)
T ss_dssp EEEEEESCCHHHHH---HHHHTTCEEEEEETTSCGGGSCC----------------TTCSEEEEES-SCTTTCCCCCHHH
T ss_pred EEEEeCCCcHHHHH---HHHHcCCeEEEEecCCccccCcc----------------CCCCEEEEeC-CCCCcCCCCCHHH
Confidence 99999999887654 36778999999987 54333332 3577888855 4669999999877
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCch-hHhhh-cCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHHhh
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-VRRLV-QAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTL 234 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-~~~~~-~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~ 234 (359)
+.+|+++|+++ ++|+|++|...... +.. ..... .+.++++.|+||++|.++ + |+++.++++.+.++.....
T Consensus 151 l~~l~~~~~~~--~li~Dea~~~~~~~--~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 225 (350)
T 3fkd_A 151 ILRLLNDHPDT--TFVLDQSYVSFTTE--EVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP- 225 (350)
T ss_dssp HHHHHHHCTTS--EEEEECTTTTSCSS--CCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT-
T ss_pred HHHHHHhCCCC--EEEEECchhhhccC--cchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC-
Confidence 77777777655 99999997543322 221 11111 123356669999998543 2 8888899998887654432
Q ss_pred CCCcchhHHHHHHHHHHHHHh---HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQEN---VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKL 311 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (359)
+..+...+.++...++.. .+ ..++..++++++.+.|+++|++.+. +..++++|+.++.. +..++.+.|
T Consensus 226 ---~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~---~~~~l~~~L 296 (350)
T 3fkd_A 226 ---WAVNALAIEAAKFILIHPAQFTL-PIRKWQRNTVDFITALNRLDGVEVH--PSGTTFFLLRLKKG---TAAELKKYM 296 (350)
T ss_dssp ---TCSCHHHHHHHHHHHHCTTTTCC-CHHHHHHHHHHHHHHHHHSTTEEEC--CCSSSEEEEEESSS---CHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHhcCCCcEEC--CCCCcEEEEECCCC---CHHHHHHHH
Confidence 223455555666666432 23 3344448889999999998898874 45788888888763 678999999
Q ss_pred Hh-cCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 312 EE-HGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 312 ~~-~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+ +||.+.++. ..++|++++ +++++++++++|+++.++...
T Consensus 297 ~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~~~~ 344 (350)
T 3fkd_A 297 LEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEKYEG 344 (350)
T ss_dssp HHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC---
T ss_pred HHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHHhcc
Confidence 77 999997763 578999984 789999999999999887654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=237.46 Aligned_cols=324 Identities=16% Similarity=0.083 Sum_probs=222.8
Q ss_pred cccccccCCC---CC---ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC-------C---CeEEcCCchH
Q 018243 3 TRTVDLRSDT---VT---KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK-------E---AGLFVPSGTM 64 (359)
Q Consensus 3 ~~~id~~~~~---~~---~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~-------~---~~~~~~~gt~ 64 (359)
+..|||..+. +. .+.+.+.+++.+.... ...|....+..++++.+++++.. + ..++++||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 4578998883 22 2237888888775433 23566677789999999998843 2 2367777888
Q ss_pred HHHHHH--HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 65 GNLISV--LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 65 a~~~~l--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
|+..++ ..++ .+||+|++++|+|.+... .++..|.+++.++. ++++.+|++.+++.+++.. ++++++
T Consensus 129 al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~v 199 (420)
T 4f4e_A 129 ALKIGADFLRTL-NPKAKVAISDPSWENHRA---LFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE-----PGTIVV 199 (420)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEESCCHHHHH---HHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC-----TTCEEE
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCCcHhHHH---HHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC-----CCCEEE
Confidence 888884 3445 599999999999887553 37778989999976 4578899999999998431 456777
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhh--cCccEEEEeccccCCCcee--
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLV--QAADSASVCLSKGLGAPVG-- 214 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~--~~~d~~~~s~~K~~g~~~g-- 214 (359)
++ +.++||||.+++.+++++|+++|++||+++|+|++|....... ...+...+. ....+++.|+||.+|.++.
T Consensus 200 ~i-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 278 (420)
T 4f4e_A 200 LH-ACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV 278 (420)
T ss_dssp EE-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE
T ss_pred Ee-CCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc
Confidence 77 6677799999999999999999999999999999975433321 112222332 1233555699999986432
Q ss_pred eEEe---cCHHHHHHHH-HHHHh---hCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHhcC-
Q 018243 215 SVIV---GSKEFIKKAR-RLRKT---LGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLNQL- 277 (359)
Q Consensus 215 g~~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~~- 277 (359)
||++ .++++++.+. ..... ...+. +...+.++...+ +...++.++++.++++++.+.|+++
T Consensus 279 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 356 (420)
T 4f4e_A 279 GALSIITDSKDEAARVLSQLKRVIRTNYSNP--PTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAG 356 (420)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTTSSC--CSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6654 3566655432 22221 11222 222222222222 2334557778889999999999987
Q ss_pred --CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 278 --KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 278 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+++.+.. +..+.++|+.++. +.+.+.|.++||.+.+++ |++++ ..+++++++++++|++++
T Consensus 357 ~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 357 IERDFSFIN-AQRGMFSYSGLTS------AQVDRLREEFGIYAVSTG----RICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CSSCCTHHH-HSCSSEEECCCCH------HHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CCCCceeEC-CCccEEEEeCCCH------HHHHHHHHhCCEEecCCC----eEEEe-cCCHHHHHHHHHHHHHHh
Confidence 3666543 3467777766542 356666789999998865 99986 458888999999999876
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=231.86 Aligned_cols=322 Identities=19% Similarity=0.199 Sum_probs=233.1
Q ss_pred cccCCCCCCh-HHHHHHHHHcCCCCCCccCC-ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 7 DLRSDTVTKP-TEAMRAAMASAEVDDDVLMH-DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 7 d~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
+|..+.+..+ ++.+.+++.+.... ..|+. .+...++++.++++++.+..++++||++|+..++.++. +|++|+++
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~-~~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~--~gd~Vlv~ 96 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS-QWLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG--LTGEVIMP 96 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH-TCCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT--CCSEEEEE
T ss_pred cccccCCCCCChHHHHHHHHHHHhc-CCcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--CCCEEEEC
Confidence 4554444333 36777777664422 24666 78899999999999999888999999999999999875 68999999
Q ss_pred CCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
+++|.+... .+...|++++.++.+. ++.+|+++|++.++ +++++|++++ |||... ++++|.
T Consensus 97 ~~~~~~~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~----~tG~~~---~l~~i~ 158 (424)
T 2po3_A 97 SMTFAATPH---ALRWIGLTPVFADIDPDTGNLDPDQVAAAVT--------PRTSAVVGVH----LWGRPC---AADQLR 158 (424)
T ss_dssp SSSCTHHHH---HHHHTTCEEEEECBCTTTSSBCHHHHGGGCC--------TTEEEEEEEC----GGGCCC---CHHHHH
T ss_pred CCccHHHHH---HHHHcCCEEEEEecCCCcCCcCHHHHHHhhC--------cCCcEEEEEC----CCCCcC---CHHHHH
Confidence 999888664 3677899999998765 67789999999988 6788988843 788864 589999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc--ccCCCceeeEEecC-HHHHHHHHHHHHhhC-----
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS--KGLGAPVGSVIVGS-KEFIKKARRLRKTLG----- 235 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~--K~~g~~~gg~~~~~-~~~~~~~~~~~~~~~----- 235 (359)
++|+++|+++|+|++|++|.. +.+.+.. ...|+++.|+| |+++++.+|+++.+ +++.+.++.......
T Consensus 159 ~la~~~~~~li~Dea~~~g~~-~~~~~~~---~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~ 234 (424)
T 2po3_A 159 KVADEHGLRLYFDAAHALGCA-VDGRPAG---SLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGG 234 (424)
T ss_dssp HHHHHTTCEEEEECTTCTTCE-ETTEETT---SSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTC
T ss_pred HHHHHcCCEEEEECccccCCe-ECCeecc---cccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 999999999999999875443 2333222 23577777877 88876556888887 888888776554311
Q ss_pred -----CCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccc----eEEEEEeccc-hHHHHH
Q 018243 236 -----GGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVET----NIVYFEITED-SKLYAA 305 (359)
Q Consensus 236 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~-~~~~~~ 305 (359)
.+.......+++++..++.. +...++..++++++.+.|+++|++.+...+..+ .++++.++.. .+.+..
T Consensus 235 ~~~~g~~~~~~~~~aa~~l~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 313 (424)
T 2po3_A 235 SPAGGTNAKMSEAAAAMGLTSLDAF-PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRD 313 (424)
T ss_dssp CTTCCCBCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHH
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHH
Confidence 11122344444445444443 336677788889999999988888875422222 2344666520 023677
Q ss_pred HHHHHHHhcCceeccCCC-------------------------cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVMPESS-------------------------TRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 306 ~~~~~l~~~gi~~~~~~~-------------------------~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++.+.|.++||.+.+... ..+|++++..++++++++++++|++++++..
T Consensus 314 ~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 314 LVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 899999999999865211 1288887789999999999999999987654
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-30 Score=228.56 Aligned_cols=311 Identities=19% Similarity=0.176 Sum_probs=225.1
Q ss_pred ccCCCCCChH-HHHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 8 LRSDTVTKPT-EAMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 8 ~~~~~~~~~~-~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
+.+.++..+. +...+.+.. ......|+ ..+...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++
T Consensus 49 ~~s~t~~~~~~~~~~~~~~~-~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~ 126 (414)
T 3ndn_A 49 YLTSGYVYGSAAVAEKSFAG-ELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-GAGDRLVAA 126 (414)
T ss_dssp CCCSBBCCSSHHHHHHHHTT-SSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEE
T ss_pred ccCCceecCChHHHHHHHhC-CcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEc
Confidence 4444555555 344444332 22333343 367889999999999999888999999999999998887 599999999
Q ss_pred CCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 85 DNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 85 ~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
.++|.+.+... ......|.+++.++.+ |+++|++.++ +++++|++++++ ||||.+.+ +++|+
T Consensus 127 ~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~--------~~t~~v~le~p~-NptG~~~~---l~~i~ 189 (414)
T 3ndn_A 127 RSLFGSCFVVCSEILPRWGVQTVFVDGD-----DLSQWERALS--------VPTQAVFFETPS-NPMQSLVD---IAAVT 189 (414)
T ss_dssp SCCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHTS--------SCCSEEEEESSC-TTTCCCCC---HHHHH
T ss_pred CCccchHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcC--------CCCeEEEEECCC-CCCCcccc---HHHHH
Confidence 99988865410 1123478899888765 8999999998 789999996655 59999876 89999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHH-HHHHHHHhhCCCcc
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIK-KARRLRKTLGGGMR 239 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~-~~~~~~~~~~~~~~ 239 (359)
++|+++|+++|+|++|+.+.. .. ++..++|+++.|+||++++++ +|+++++++.+. .++......+.+.
T Consensus 190 ~la~~~g~~livDe~~~~~~~---~~---~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~- 262 (414)
T 3ndn_A 190 ELAHAAGAKVVLDNVFATPLL---QQ---GFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAM- 262 (414)
T ss_dssp HHHHHTTCEEEEECTTTHHHH---CC---CGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCC-
T ss_pred HHHHHcCCEEEEECCCccccc---CC---chhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999753322 11 223368999999999998744 688989888776 6665556666655
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceE-ecCC---------------ccceEEEEEeccch---
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV-DVDA---------------VETNIVYFEITEDS--- 300 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~---------------~~~~~~~~~~~~~~--- 300 (359)
++..++++...++.... ++++..++++++.+.|++.|++.. ..+. ..+.++++.++...
T Consensus 263 -~~~~a~~~~~~l~~l~~-r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~ 340 (414)
T 3ndn_A 263 -SAFNAWVLLKGLETLAI-RVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA 340 (414)
T ss_dssp -CHHHHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH
T ss_pred -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc
Confidence 44555555555555444 777888999999999999887753 2221 24678999997520
Q ss_pred HHHHHHHHHHHHhcCceeccC---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKLEEHGVLVMPE---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 301 ~~~~~~~~~~l~~~gi~~~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
......|.+.|...++.+..| .++.+|+++. .|+.+++++.|++++
T Consensus 341 ~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG----~e~~~dli~dl~~al 413 (414)
T 3ndn_A 341 KQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG----LEDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC----cCCHHHHHHHHHHhh
Confidence 346778888887766655333 2457999985 367777888877765
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=235.80 Aligned_cols=334 Identities=16% Similarity=0.163 Sum_probs=228.3
Q ss_pred ccccccCCC---C-CChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHh-C-C-CCeEEcCCchHHHHHHHH-
Q 018243 4 RTVDLRSDT---V-TKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVM-G-K-EAGLFVPSGTMGNLISVL- 71 (359)
Q Consensus 4 ~~id~~~~~---~-~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~-~-~-~~~~~~~~gt~a~~~~l~- 71 (359)
.++||.++. + ..++|.+.+++.+...... .|...+...++++.+++++ + . +..++++||++|+..++.
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~ 121 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI 121 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHH
Confidence 468887764 2 2366889999887654321 3455788899999999999 5 3 345788889999999988
Q ss_pred --HhhhhcCCeEEecCCCcceeeccccccccCCcc-------------ceeeecCC-----CCCCCHHHHHHHhcCCCCC
Q 018243 72 --VHCETRGSEVILGDNSHIHIYENGGISTIGGVH-------------PRTVKNNQ-----DGTMDIDLIEAAIRDPKGE 131 (359)
Q Consensus 72 --~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~-----~~~~~~~~l~~~l~~~~~~ 131 (359)
.+. +++ +|++.+|+|..... ......|.+ ++.++.+. ++.+|+++|++.+++..
T Consensus 122 a~~~~-~~~-~vi~~~p~y~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-- 195 (426)
T 1sff_A 122 ARAAT-KRS-GTIAFSGAYHGRTH--YTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-- 195 (426)
T ss_dssp HHHHH-TCC-EEEEETTCCCCSSH--HHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC--
T ss_pred HHHhh-CCC-eEEEECCCcCCCch--HhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc--
Confidence 444 355 89998888765443 113333322 44454432 23368999999887310
Q ss_pred ccCCceeEEEEeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~ 208 (359)
+.+++++|++++.++| || ..++.+++++|.++|++||++||+||+|+ + +...+. ........+|++ |+||+
T Consensus 196 -~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~di~--s~sK~ 269 (426)
T 1sff_A 196 -APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQMGVAPDLT--TFAKS 269 (426)
T ss_dssp -CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTSCCSEE--EECGG
T ss_pred -CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcccchhhhhhcCCCCCEE--EEccc
Confidence 0036788888777787 99 78889999999999999999999999986 2 222222 111121235544 78899
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceE
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRV 282 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~ 282 (359)
++++.. |++++++++++.+... ....++..++..++++..+++...+ ...++..++++++++.|++ ++.+..
T Consensus 270 ~~~GlriG~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 347 (426)
T 1sff_A 270 IAGGFPLAGVTGRAEVMDAVAPG--GLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGD 347 (426)
T ss_dssp GGTSSCCEEEEEEHHHHTTSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred ccCCCceEEEEEcHHHHhhhccC--CcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 985222 8888888887765421 2233444456666666666653322 2455666777777777765 333332
Q ss_pred ecCCccceEEEEEecc------chHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITE------DSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
. +..++++|+.+.. +.+.+..++.+.|.++||.+.+++ ..++|++++..++++++++++++|+++++++
T Consensus 348 ~--~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 348 V--RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp E--EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred E--EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 2 2358899999853 123567889999988999998876 5789999988899999999999999998775
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=235.84 Aligned_cols=315 Identities=20% Similarity=0.238 Sum_probs=230.4
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
.++|+...... ..|++.+++.+.... ..|..++...++++.+++++|.+..++++||++|+..++..+..++|++|++
T Consensus 3 ~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 3 EFIDLKNQQAR-IKDKIDAGIQRVLRH-GQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp CSSCCHHHHHH-HHHHHHHHHHHHHHH-CCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred Ccccccccccc-cCHHHHHHHHHHHhc-CCccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 34555543322 236777777664322 2455778999999999999999988999999999999999993369999999
Q ss_pred cCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+.++|.+... .+...|++++.++.+.+ +.+|++++++.++ +++++|++ +||+|...+ +++|
T Consensus 81 ~~~~~~~~~~---~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~----~~~~G~~~~---~~~i 142 (367)
T 3nyt_A 81 PGFTYVATAE---TVALLGAKPVYVDIDPRTYNLDPQLLEAAIT--------PRTKAIIP----VSLYGQCAD---FDAI 142 (367)
T ss_dssp ESSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCGGGTGGGCC--------TTEEEECC----BCGGGCCCC---HHHH
T ss_pred CCCccHHHHH---HHHHcCCEEEEEecCCccCCcCHHHHHHhcC--------cCCcEEEe----eCCccChhh---HHHH
Confidence 9999988765 26777999999987755 8899999999997 78888873 348897655 8999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEec--cccCCC-ceeeEEec-CHHHHHHHHHHHHhh----
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCL--SKGLGA-PVGSVIVG-SKEFIKKARRLRKTL---- 234 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~--~K~~g~-~~gg~~~~-~~~~~~~~~~~~~~~---- 234 (359)
.++|+++|+++|+|++|++|... .+.....+ .|++++|+ +|++++ +.||+++. ++++.+.++......
T Consensus 143 ~~la~~~~~~li~D~a~~~g~~~-~~~~~~~~---~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~ 218 (367)
T 3nyt_A 143 NAIASKYGIPVIEDAAQSFGASY-KGKRSCNL---STVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRR 218 (367)
T ss_dssp HHHHHHTTCCBEEECTTTTTCEE-TTEETTSS---SSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHHHHcCCEEEEECccccCCeE-CCeeccCC---CCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcC
Confidence 99999999999999998776542 23322222 28888885 899987 45677776 688888877654421
Q ss_pred ------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc--ceE--EEEEeccchHHHH
Q 018243 235 ------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE--TNI--VYFEITEDSKLYA 304 (359)
Q Consensus 235 ------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~--~~~--~~~~~~~~~~~~~ 304 (359)
+.+...+...++++...++...+ ..++..++++++.+.|+++ ++.+...+.. ..+ +.+.++ +.
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~~~~l~~~~~-~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~ 291 (367)
T 3nyt_A 219 YHHIRVGVNSRLDTLQAAILLPKLEIFEE-EIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD-----NR 291 (367)
T ss_dssp TEECSCCCBCCCCHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS-----SH
T ss_pred ceeeccCcCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC-----CH
Confidence 23455566777777766665433 6677888889999999988 5554222111 111 223332 56
Q ss_pred HHHHHHHHhcCceeccCC------------------------CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPES------------------------STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~~------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+++.+.|.++||.+.+.. ...+|+++++.++++|++++++.|++.
T Consensus 292 ~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 292 ESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999874332 135999999999999999999999754
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=229.09 Aligned_cols=313 Identities=15% Similarity=0.097 Sum_probs=224.1
Q ss_pred cCCCCCChHH-HHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 9 RSDTVTKPTE-AMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 9 ~~~~~~~~~~-~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
.++++..|.. ...+.+.........|+ ..+...++|+.+++++|.+.+++++||++|+..++.+++ ++||+|+++.
T Consensus 50 ~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~ 128 (415)
T 2fq6_A 50 RASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-EQGDHVLMTN 128 (415)
T ss_dssp CCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEET
T ss_pred cccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 3456666664 44444433212334455 467889999999999999888999999999999999887 5999999999
Q ss_pred CCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 86 NSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 86 ~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
+.|.+.+... ...+..|+++..++.+ |++++++.++ +++++|++++++ ||||.+.+ +++|.+
T Consensus 129 ~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~--------~~tklV~~e~~~-NptG~v~d---l~~I~~ 191 (415)
T 2fq6_A 129 TAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ--------PNTKIVFLESPG-SITMEVHD---VPAIVA 191 (415)
T ss_dssp TSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCC--------TTEEEEEEESSC-TTTCCCCC---HHHHHH
T ss_pred CCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhc--------cCCcEEEEECCC-CCCCEeec---HHHHHH
Confidence 9998776411 1134568888888654 8899999998 789999996655 59999987 899999
Q ss_pred HHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHHHHHHHHHhhCCCcc
Q 018243 165 IAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIKKARRLRKTLGGGMR 239 (359)
Q Consensus 165 ~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
+|++ +|+++|+|++|+.+.. ..+ +..++|+++.|+||++|++. +|++++++++++.++......+...
T Consensus 192 la~~~~~g~~livD~a~a~~~~---~~p---~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~- 264 (415)
T 2fq6_A 192 AVRSVVPDAIIMIDNTWAAGVL---FKA---LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV- 264 (415)
T ss_dssp HHHHHCTTCEEEEECTTTTTTS---SCG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC-
T ss_pred HHHhhcCCCEEEEECCCccccc---CCc---cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCC-
Confidence 9999 9999999999754321 122 22378999999999998764 5888888888888776665555544
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccc-hHH
Q 018243 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITED-SKL 302 (359)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~-~~~ 302 (359)
++..++.+..+++.... ++++..+++..+.+.|++.|.+. +..+. ..+.+++|.++.. ...
T Consensus 265 -~~~~a~~~~~~l~~l~~-r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~ 342 (415)
T 2fq6_A 265 -DADTAYITSRGLRTLGV-RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNE 342 (415)
T ss_dssp -CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHH
T ss_pred -CHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHH
Confidence 34444445555555443 67778888999999999876654 22221 2467888998751 023
Q ss_pred HHHHHHHHHHhcCceec------------c-----------C--CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 303 YAACLLKKLEEHGVLVM------------P-----------E--SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 303 ~~~~~~~~l~~~gi~~~------------~-----------~--~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+...+.+.|...++.+. | . ..+.+|++++...++++++.+.++|++
T Consensus 343 ~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 343 ELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp HHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 56667666654333321 1 1 236799999988888888888887764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=232.77 Aligned_cols=329 Identities=16% Similarity=0.084 Sum_probs=224.8
Q ss_pred ccccccCCC---CCCh--HHHHHHHHHcCCCCCCcc----CCChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDT---VTKP--TEAMRAAMASAEVDDDVL----MHDPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~---~~~~--~~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~ 71 (359)
.++||.++. +.++ +|.+.+++.+.......+ ...+...++++.+++++|.+ ..++++||++|+..++.
T Consensus 43 ~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~ 122 (419)
T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIK 122 (419)
T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH
T ss_pred EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHH
Confidence 468998764 3333 588888887754332212 23566789999999999975 35788889999999999
Q ss_pred HhhhhcCCeEEecCCCcceeecccccccc-------------CCccceeeecCCCCC----------------CCHHHHH
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTI-------------GGVHPRTVKNNQDGT----------------MDIDLIE 122 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-------------~g~~~~~v~~~~~~~----------------~~~~~l~ 122 (359)
.+...++++|++.+|+|.+... ..... ....++.++.+.++. +|+++|+
T Consensus 123 ~~~~~~~~~vi~~~p~yh~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 200 (419)
T 2eo5_A 123 VVKNTGRKYIIAFLGGFHGRTF--GSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIE 200 (419)
T ss_dssp HHHTTSCCEEEEETTCCCCSSH--HHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCcEEEECCCcCCCCH--hhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHH
Confidence 8763248899999988754332 11111 112455665544332 3578888
Q ss_pred -HHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCc
Q 018243 123 -AAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAA 198 (359)
Q Consensus 123 -~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~ 198 (359)
+.+++.. ..+++++|++ ++.+||||. +.+.+++++|.++|++||+++|+||+|..... .+. .........
T Consensus 201 ~~~i~~~~---~~~~~~~vi~-~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~--~g~~~~~~~~~~~~ 274 (419)
T 2eo5_A 201 DYIFVNLV---PPEEVAGIFF-EPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGR--TGKLFAIENFNTVP 274 (419)
T ss_dssp HTHHHHTC---CGGGEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT--TSSSSGGGGGTCCC
T ss_pred HHHHhhcc---CCCCEEEEEE-eCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc--CcchhhHHhcCCCC
Confidence 8886310 0025667777 556668996 66788899999999999999999999862211 121 112122245
Q ss_pred cEEEEeccccCCCc-ee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhc
Q 018243 199 DSASVCLSKGLGAP-VG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQ 276 (359)
Q Consensus 199 d~~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 276 (359)
|++ |+||.++++ .+ |+++++++++ .+ . ...+.++..+++.++++..+++...+ .+++..+++++|.+.|++
T Consensus 275 d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~--~~~~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~l~~~L~~ 347 (419)
T 2eo5_A 275 DVI--TLAKALGGGIMPIGATIFRKDLD-FK-P--GMHSNTFGGNALACAIGSKVIDIVKD-LLPHVNEIGKIFAEELQG 347 (419)
T ss_dssp SEE--EECGGGGTTTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CEE--EecccccCCccceEEEEEchHhh-cC-C--cccCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 654 678999754 34 7788887776 54 2 12333455566777777777766544 677788899999999987
Q ss_pred CCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 277 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+ +... +..++++++.+.. ...... +.+.|.++||.+.+++..++||+++...+++++++++++|+++++++
T Consensus 348 ~--~~~~--~~~g~~~~i~~~~-~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 348 L--ADDV--RGIGLAWGLEYNE-KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp S--SSEE--EEETTEEEEECSC-HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred h--hhhe--EeeeEEEEEEEec-CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6 3222 3467888888842 112455 88999999999998877899999988899999999999999988764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=234.47 Aligned_cols=327 Identities=13% Similarity=0.065 Sum_probs=225.7
Q ss_pred cccccccCCCC------CChHHHHHHHHHcCC--C-CCCccCCChHHHHHHHHHHHHh-CC-------CCeEE--cCCch
Q 018243 3 TRTVDLRSDTV------TKPTEAMRAAMASAE--V-DDDVLMHDPTAFRLETEMAKVM-GK-------EAGLF--VPSGT 63 (359)
Q Consensus 3 ~~~id~~~~~~------~~~~~~~~~a~~~~~--~-~~~~~~~~~~~~~l~~~la~~~-~~-------~~~~~--~~~gt 63 (359)
...|||..+.+ ..|.|.+.+++.+.. . ....|+..++..++++.+++++ +. +..++ ++||+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~ 109 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcH
Confidence 35789999874 244588888887754 1 2334666677899999999999 43 34466 88888
Q ss_pred HHHHHHHH--HhhhhcC-----CeEEecCCCcceeeccccccccCCcc-ceeeecC--CCCCCCHHHHHHHhcCCCCCcc
Q 018243 64 MGNLISVL--VHCETRG-----SEVILGDNSHIHIYENGGISTIGGVH-PRTVKNN--QDGTMDIDLIEAAIRDPKGEIV 133 (359)
Q Consensus 64 ~a~~~~l~--~~~~~~g-----~~vl~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~ 133 (359)
+|+..++. .++ .+| |+|+++.|+|.+... .+...|.+ ++.++.. +++.+|++++++.+++.
T Consensus 110 ~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----- 180 (412)
T 1ajs_A 110 GALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNG---VFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA----- 180 (412)
T ss_dssp HHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHH---HHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHH---HHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC-----
Confidence 99998864 344 488 999999999887553 36677888 8888763 56778999999998731
Q ss_pred CCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh---cCchhHhhhcCcc--EEEEecccc
Q 018243 134 YPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA---LGVPVRRLVQAAD--SASVCLSKG 208 (359)
Q Consensus 134 ~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~~~~d--~~~~s~~K~ 208 (359)
.++++++++ +.++||||.+++.+++++|+++|++||+++|+||+|....... ...+...+....| +++.|+||.
T Consensus 181 ~~~~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 259 (412)
T 1ajs_A 181 PEFSIFVLH-ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp CTTCEEEEE-SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred CCCcEEEEE-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccc
Confidence 035667767 5566799999999999999999999999999999964332210 1112333322233 556699999
Q ss_pred CCCce-e-eEEec---CHHHHH----HHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHHH
Q 018243 209 LGAPV-G-SVIVG---SKEFIK----KARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 209 ~g~~~-g-g~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~l 270 (359)
+|.++ . |++++ ++++.+ .+.........+. +...+.++..+++ ...++.++++.++++++
T Consensus 260 ~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (412)
T 1ajs_A 260 FGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNP--PAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL 337 (412)
T ss_dssp SCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC--CSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCC--ChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 98633 2 77877 777443 3333222211111 3333444444443 24455677788899999
Q ss_pred HHHHhcCC---CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 271 AEGLNQLK---GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 271 ~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
.+.|+++. ++++.. +..+.++|+.++ ...+...|.++||.+.++ +|++++ ..+++++++++++|+
T Consensus 338 ~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~l~~~gv~v~~~----~Ris~~-~~~~~~i~~~~~~l~ 405 (412)
T 1ajs_A 338 RARLEALKTPGTWNHIT-DQIGMFSFTGLN------PKQVEYLINQKHIYLLPS----GRINMC-GLTTKNLDYVATSIH 405 (412)
T ss_dssp HHHHHHTTCSSCCHHHH-HCCSSEEECCCC------HHHHHHHHHTTCEECCTT----SEEEGG-GCCTTTHHHHHHHHH
T ss_pred HHHHHhhCCCCCeeEEc-CCCceEEEeCCC------HHHHHHHHHhCCEEecCC----cEEEee-eCCHHHHHHHHHHHH
Confidence 99999873 366533 346677776543 234555568899999874 599986 358999999999999
Q ss_pred HHHHHH
Q 018243 348 KIYAGV 353 (359)
Q Consensus 348 ~~~~~~ 353 (359)
++++++
T Consensus 406 ~~l~~~ 411 (412)
T 1ajs_A 406 EAVTKI 411 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988754
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=232.97 Aligned_cols=326 Identities=15% Similarity=0.064 Sum_probs=221.9
Q ss_pred cccccccCCC---CCC---hHHHHHHHHHc-CCCC--CCccCCChHHHHHHHHHHHHhCC-------C---CeEEcCCch
Q 018243 3 TRTVDLRSDT---VTK---PTEAMRAAMAS-AEVD--DDVLMHDPTAFRLETEMAKVMGK-------E---AGLFVPSGT 63 (359)
Q Consensus 3 ~~~id~~~~~---~~~---~~~~~~~a~~~-~~~~--~~~~~~~~~~~~l~~~la~~~~~-------~---~~~~~~~gt 63 (359)
+..|||..+. +.. +.+.+.+++.+ .... ...|....+..++++.++++++. + ..++++||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 4578998883 222 22789998887 5543 33566667789999999999853 2 336777788
Q ss_pred HHHHHHHH--HhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 64 MGNLISVL--VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 64 ~a~~~~l~--~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+++..++. .++ ++||+|+++.|+|.+... .++..|.+++.++. ++++.+|++++++.+++.. +++++
T Consensus 106 ~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~ 176 (397)
T 3fsl_A 106 GALKVGADFLKRY-FPESGVWVSDPTWENHVA---IFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ-----AGSIV 176 (397)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEESSCCHHHHH---HHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC-----TTCEE
T ss_pred HHHHHHHHHHHhc-CCCCeEEEeCCCchhHHH---HHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC-----CCCEE
Confidence 88888853 444 589999999999887553 36778889999876 4578899999999998521 35667
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhhc-Ccc-EEEEeccccCCCce-e
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLVQ-AAD-SASVCLSKGLGAPV-G 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~~-~~d-~~~~s~~K~~g~~~-g 214 (359)
+++ +.++||||.+++.+++++|+++|++||+++|+|++|..+.... ...+...+.. ..+ +++.|+||.+|.++ +
T Consensus 177 v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~r 255 (397)
T 3fsl_A 177 LLH-PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGER 255 (397)
T ss_dssp EEC-SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGC
T ss_pred EEe-CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCC
Confidence 776 5667799999999999999999999999999999975544321 1123333321 222 45559999998543 2
Q ss_pred -eEEe---cCHHHHHHHH-HHHHhh-CCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHhcCC-
Q 018243 215 -SVIV---GSKEFIKKAR-RLRKTL-GGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLNQLK- 278 (359)
Q Consensus 215 -g~~~---~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~~~- 278 (359)
||++ .+++.++.+. ...... ......+...+.++...+ ....++.++++.++++++.+.|++++
T Consensus 256 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 335 (397)
T 3fsl_A 256 VGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP 335 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred eeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6664 3566665443 222211 111111222222222222 33445567778889999999999874
Q ss_pred --CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 279 --GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 279 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++.+.. +..+.++|+.++. +.+.+.|.++||.+.+++ |++++ ..+++++++++++|++++
T Consensus 336 ~~~~~~~~-~~~~~~~~~~~~~------~~~~~~l~~~gi~v~~g~----Ris~~-~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 336 ERNFDYLL-NQRGMFSYTGLSA------AQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp TSCCTHHH-HCCSSEEECCCCH------HHHHHHHHTTCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred CCCceeec-CCceEEEecCCCH------HHHHHHHHhCCEEECCCC----eEEEE-ecCHhhHHHHHHHHHhhC
Confidence 566533 3467777776643 346667789999999876 99986 457788999999998753
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-29 Score=224.63 Aligned_cols=311 Identities=23% Similarity=0.214 Sum_probs=216.1
Q ss_pred ccccCCCCCChHHHHHHHHH--cCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 6 VDLRSDTVTKPTEAMRAAMA--SAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~--~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
-|+.+.++..+. +.+++. ........|+ ..+...++++.+++++|.+..++++||++|+..++.+++ ++|++|
T Consensus 31 p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-~~gd~v 107 (398)
T 1gc0_A 31 PVYQTATFTFPT--VEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-RPGDEV 107 (398)
T ss_dssp CBCCCSCBCCC-----------------------CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEE
T ss_pred CccCCCccccCC--HHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-cCCCEE
Confidence 455565555544 333332 1111223344 467889999999999999988999999999999999987 599999
Q ss_pred EecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 82 ILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 82 l~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
+++.++|.+.+... ......|.+++.++.. |++++++.++ +++++|+++++ +||||.+.+ ++
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~---l~ 170 (398)
T 1gc0_A 108 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT--------PATRVIYFESP-ANPNMHMAD---IA 170 (398)
T ss_dssp EEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC---HH
T ss_pred EEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC--------CCCeEEEEECC-CCCCccccc---HH
Confidence 99999998866411 0135678888888754 8999999998 68999999665 559999986 89
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCHHHHH-HHHHHHHh-hC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSKEFIK-KARRLRKT-LG 235 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~-~~~~~~~~-~~ 235 (359)
+|.++|+++|+++|+|++|..+... .+ +..+.|+++.|+||+++++. ||+++++++.++ .++..... ++
T Consensus 171 ~i~~l~~~~~~~li~D~~~~~~~~~---~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~ 244 (398)
T 1gc0_A 171 GVAKIARKHGATVVVDNTYCTPYLQ---RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 244 (398)
T ss_dssp HHHHHHGGGTCEEEEECTTTHHHHC---CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHcCCEEEEECCCcccccC---Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCC
Confidence 9999999999999999998654432 11 22378999999999998764 688888887665 55544444 44
Q ss_pred CCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceE-ecC---------------CccceEEEEEeccc
Q 018243 236 GGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV-DVD---------------AVETNIVYFEITED 299 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~---------------~~~~~~~~~~~~~~ 299 (359)
.+. ++..++++..+++.... ++++..++++.+.+.|++.|++.- ..+ +..++++.+.++.
T Consensus 245 ~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~- 320 (398)
T 1gc0_A 245 AVL--SPHDAALLMRGIKTLNL-RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG- 320 (398)
T ss_dssp CCC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-
T ss_pred CCC--CHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-
Confidence 444 44555555666654433 677778888888888888654431 111 1357788888865
Q ss_pred hHHHHHHHHHHHHhcCceecc---C---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLEEHGVLVMP---E---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~~~---~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+...+.+.+.|+.+.. + ....+|++++...++++++.+.++|+++
T Consensus 321 ---~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 321 ---GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp ---HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 234455566777766532 2 1478999998888888888888888754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=234.63 Aligned_cols=328 Identities=16% Similarity=0.109 Sum_probs=226.1
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC--------ccCCChHHHHHH----HHHHHHhCCCC-----eEEcCCchHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD--------VLMHDPTAFRLE----TEMAKVMGKEA-----GLFVPSGTMGNL 67 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~ 67 (359)
.|+|..+.. .+++.+++++.+...+.. .|+..+...+++ +.+++++|.+. .+++++|++++.
T Consensus 46 ~i~L~a~e~-~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~ 124 (483)
T 1rv3_A 46 GLELIASEN-FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF 124 (483)
T ss_dssp SEECCTTCC-CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred CeEEEcCCC-CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHH
Confidence 467755443 356899999987654422 244445555555 88899999874 388999998888
Q ss_pred HHHHHhhhhcCCeEEecCCCcceeecccc-----ccccCC--ccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 68 ISVLVHCETRGSEVILGDNSHIHIYENGG-----ISTIGG--VHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 68 ~~l~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~~~g--~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
.++.+++ ++||+|+++++.|.+....+. .+...| .+++.++.+ +++.+|+++|++.+++ +++++
T Consensus 125 ~~~~all-~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~-------~~tkl 196 (483)
T 1rv3_A 125 AVYTALV-EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL-------FHPKL 196 (483)
T ss_dssp HHHHHHT-CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-------HCCSE
T ss_pred HHHHHhc-CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh-------cCCcE
Confidence 8888887 699999999999887754221 123334 233344434 5688999999999984 57889
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEec
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG 219 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~ 219 (359)
|++ +++| ++ .+.+ +++|+++|+++|+++|+|++|..|.... +....++ .++|+++.|+||+|++|.||++++
T Consensus 197 Ii~-~~sn-~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~-~~~~~p~-~~~div~~s~~K~l~GprgG~i~~ 268 (483)
T 1rv3_A 197 IIA-GTSC-YS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVA-GVVPSPF-EHCHVVTTTTHKTLRGCRAGMIFY 268 (483)
T ss_dssp EEE-CCSS-CC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHH-TSSCCGG-GTCSEEEEESSGGGCCCSCEEEEE
T ss_pred EEE-eCCc-CC-CcCC---HHHHHHHHHHcCCEEEEEccchhccccc-CCCCCCC-CCCcEEEecCcccCCCCCceEEEE
Confidence 998 6655 55 6665 8999999999999999999987665532 2222222 268999999999998788898888
Q ss_pred CHH---------------HHHHHHHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 220 SKE---------------FIKKARRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 220 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
+++ +.+.+.........+..... ..++...++ ....++..++..+++++|.+.|+++ |+
T Consensus 269 ~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~-~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 346 (483)
T 1rv3_A 269 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNH-AIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GY 346 (483)
T ss_dssp ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHH-HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHH-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 653 33333322111111111111 122222222 2334557778889999999999998 99
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec----cCC-----CcEEEEEeCCCCC----HHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----PES-----STRVRIVVHHQIS----ANDVHYTLSCFQ 347 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~~-----~~~lRi~~~~~~~----~~~i~~~~~~l~ 347 (359)
++..+.....++++.+.. .+.+..++.+.|.+.||.+. |+. ..++||+++..++ ++++++++++|+
T Consensus 347 ~~~~~~~~~~~~~v~~~~-~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~ 425 (483)
T 1rv3_A 347 KIVTGGSDNHLILVDLRS-KGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIH 425 (483)
T ss_dssp EEGGGSCSSSEEEEEGGG-GTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHH
T ss_pred EeccCCCCCceEEEeccC-CCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHH
Confidence 886443234577888764 23467788888999999987 653 4689999864344 999999999999
Q ss_pred HHHHH
Q 018243 348 KIYAG 352 (359)
Q Consensus 348 ~~~~~ 352 (359)
++++.
T Consensus 426 ~~l~~ 430 (483)
T 1rv3_A 426 RGIEL 430 (483)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-30 Score=233.85 Aligned_cols=334 Identities=16% Similarity=0.130 Sum_probs=233.0
Q ss_pred cccCCCCCChHHHHHHHHHcCCCCC-CccCCChHHH----HHHHHHHHHhCCC-------CeEEcCCchHHHHHHHHHhh
Q 018243 7 DLRSDTVTKPTEAMRAAMASAEVDD-DVLMHDPTAF----RLETEMAKVMGKE-------AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 7 d~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~----~l~~~la~~~~~~-------~~~~~~~gt~a~~~~l~~~~ 74 (359)
++.+.....++|.+.+++.+..... ..+..++... ++++.+++++|.+ .+++++||++|+..++.++.
T Consensus 59 ~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~ 138 (502)
T 3hbx_A 59 NLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK 138 (502)
T ss_dssp BTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred eeccccCCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence 3444334566788999988765432 2234455554 4555678889987 23578999999999988876
Q ss_pred hh-------cCC-----eEEecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 75 ET-------RGS-----EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 75 ~~-------~g~-----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
.. +|+ .|+++.++|.+..+ .+...|++++.++.+++ +.+|+++|++.++ +++++|+
T Consensus 139 ~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~---~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--------~~t~~v~ 207 (502)
T 3hbx_A 139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWEK---FARYFEVELKEVKLSEGYYVMDPQQAVDMVD--------ENTICVA 207 (502)
T ss_dssp HHHHHHHHHTTCCCSCCEEEEETTCCHHHHH---HHHHTTCEEEEECCBTTBCSCCHHHHHHHCC--------TTEEEEE
T ss_pred HHHhHHHHhcCCCCCCcEEEEcCCchHHHHH---HHHHcCceeEEEecCCCcCcCCHHHHHHHHh--------hCCEEEE
Confidence 42 265 89999999988664 37788999999987655 8899999999999 6788888
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHc------CcEEEEecccccchhhhcCchhH-hh-hcCccEEEEeccccCCCce
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKH------GLKLHIDGARIFNAAVALGVPVR-RL-VQAADSASVCLSKGLGAPV 213 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~~~~-~~-~~~~d~~~~s~~K~~g~~~ 213 (359)
+++ ++||||.+.+ +++|.++|+++ |+++|+|+||+.+..+....... .+ ..++|+++++.||++++|.
T Consensus 208 ~~~-~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~ 283 (502)
T 3hbx_A 208 AIL-GSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA 283 (502)
T ss_dssp EEB-SCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS
T ss_pred Eec-CCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCC
Confidence 855 5559999866 89999999999 99999999986544321111110 11 2478999999999997776
Q ss_pred e-eEEec-CHHHHHHHHHHH-HhhCCC-------cch---hHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCC
Q 018243 214 G-SVIVG-SKEFIKKARRLR-KTLGGG-------MRQ---VGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKG 279 (359)
Q Consensus 214 g-g~~~~-~~~~~~~~~~~~-~~~~~~-------~~~---~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g 279 (359)
| |+++. +++.+....... .+.+.. .+. ......+++..+ .+...++.++..+++++|.+.|+++++
T Consensus 284 g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~ 363 (502)
T 3hbx_A 284 GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTER 363 (502)
T ss_dssp SCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6 65554 555432211000 111111 111 112222223222 233344778888999999999999977
Q ss_pred ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec----c---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----P---ESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~---~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+++..+....++++|.++.....+..++.+.|.++||.+. | .+...+|++++..+++++++.+++.|++++++
T Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~ 443 (502)
T 3hbx_A 364 FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRE 443 (502)
T ss_dssp EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 9986442578889998875323466799999999999862 2 13468999999999999999999999999988
Q ss_pred HHh
Q 018243 353 VCE 355 (359)
Q Consensus 353 ~~~ 355 (359)
+.+
T Consensus 444 l~~ 446 (502)
T 3hbx_A 444 LDE 446 (502)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-29 Score=224.81 Aligned_cols=286 Identities=21% Similarity=0.219 Sum_probs=211.3
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..+...++++.+++++|.+..+++++|++|+..++..+. ++|++|+++.++|.+..... ..+...|.+++.++.+
T Consensus 62 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--- 137 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA--- 137 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC---
Confidence 467889999999999999888999999999999999887 59999999999998866410 0126678888888765
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++ +||||.+++ +++|.++|++||+++|+|++|..+... .. +
T Consensus 138 --d~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~---~~---~ 197 (398)
T 2rfv_A 138 --KPEEIRAAMR--------PETKVVYIETP-ANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ---QP---L 197 (398)
T ss_dssp --SHHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CG---G
T ss_pred --CHHHHHHhcC--------CCCeEEEEECC-CCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC---Cc---h
Confidence 8999999998 68999999665 559999987 899999999999999999998655432 11 1
Q ss_pred hcCccEEEEeccccCCCce---eeEEecCHHHHH-HHHHHHHhh-CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGSKEFIK-KARRLRKTL-GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL 269 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (359)
..+.|+++.|+||++++|. ||++++++++++ .++...... +.+. ++..++++..+++.... +.++..++.+.
T Consensus 198 ~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 274 (398)
T 2rfv_A 198 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCM--SPFNAWLTLRGVKTLGI-RMERHCENALK 274 (398)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHH
T ss_pred hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHhhhhhHHH-HHHHHHHHHHH
Confidence 2368999999999997654 588999988877 555554444 4444 44556666667765433 56667777888
Q ss_pred HHHHHhcCC--------------CceEecC--CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------------
Q 018243 270 LAEGLNQLK--------------GLRVDVD--AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------ 321 (359)
Q Consensus 270 l~~~l~~~~--------------g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------ 321 (359)
+.+.|++.+ ++++..+ ...++++++.++. ...+...+.+.+...|+.+.++
T Consensus 275 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~ 353 (398)
T 2rfv_A 275 IARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-GLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 353 (398)
T ss_dssp HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHH
T ss_pred HHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-CHHHHHHHHHhCCcceeccCCCCcceeeeccccc
Confidence 888887753 2222111 1357888888875 1224455555555556665443
Q ss_pred -------------C--CcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 322 -------------S--STRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 322 -------------~--~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+ .+.+|++++...+++++++++++|+++
T Consensus 354 ~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 354 THSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 1 578999999888888888888888653
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=241.65 Aligned_cols=322 Identities=18% Similarity=0.143 Sum_probs=205.9
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC----CC-ccC----CChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHh
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD----DD-VLM----HDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~----~~-~~~----~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
+|.|.......++|.+.+++.+.... .. .|. ..+...++++.+++++|.+ ..++++||++|+..++.++
T Consensus 21 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l 100 (400)
T 3vax_A 21 MTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGL 100 (400)
T ss_dssp -CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTT
T ss_pred cEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHH
Confidence 45555555556667777777664321 10 111 1344688999999999986 3577788889999988887
Q ss_pred h---hhcCC-eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 74 C---ETRGS-EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 74 ~---~~~g~-~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+ .++|| +|+++.++|.+...........|++++.++.+.++.+|+++|++.++ +++++|++++ ++||
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~-~~np 171 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR--------PDTLLVSLMH-VNNE 171 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC--------TTEEEEECCS-BCTT
T ss_pred HHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC--------CCceEEEEEC-CCCC
Confidence 6 24899 99999999888654111223468899999888889999999999998 6889998855 5569
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEe-cCH-HHH--
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIV-GSK-EFI-- 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~-~~~-~~~-- 224 (359)
||.+.+ +++|.++|++||+++|+|++|+++... ..... . .|+++.|+||.+| +.| |+++ .++ ++.
T Consensus 172 tG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~---~~~~~--~-~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~ 241 (400)
T 3vax_A 172 TGVIQP---VAELAQQLRATPTYLHVDAAQGYGKVP---GDLTT--P-IDMISISGHKIGA-PKGVGALVTRRREEMDDE 241 (400)
T ss_dssp TCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSG---GGGGS--C-CSEEEEETGGGTS-CSSCEEEEECBCSSSTTC
T ss_pred ceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCC---cChhh--c-CcEEEEeHHHhCC-CCceEEEEEecchhcccc
Confidence 999988 799999999999999999998654432 11111 1 7899999999766 444 6666 543 111
Q ss_pred -HHHHHHH-------HhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc--cceE
Q 018243 225 -KKARRLR-------KTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV--ETNI 291 (359)
Q Consensus 225 -~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~--~~~~ 291 (359)
..+.... .....+. +....++...++ ....++.+++..++++++.+.|+ .+++++..++. .+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~ 318 (400)
T 3vax_A 242 RVPLEPIMFGGGQERKLRPGTL--PVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHI 318 (400)
T ss_dssp BCCCCCSSCSSCTGGGTSCSCC--CHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTE
T ss_pred ccccCceecCCCceeeeecCCC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCE
Confidence 1111000 0111111 222222222333 34445577788899999999999 78998754332 1356
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEe-CCCCCHHHHHHHHHHHH
Q 018243 292 VYFEITEDSKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVV-HHQISANDVHYTLSCFQ 347 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~-~~~~~~~~i~~~~~~l~ 347 (359)
+++.++. .+.+++.+.|. +||.+.++. .+++|+++ +...+++++++++++|+
T Consensus 319 ~~~~~~~---~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 394 (400)
T 3vax_A 319 LNLSFED---VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVA 394 (400)
T ss_dssp EEEECTT---CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---------------
T ss_pred EEEEeCC---CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHH
Confidence 7777764 36788999999 999887642 47899999 88899999999999999
Q ss_pred HHHHH
Q 018243 348 KIYAG 352 (359)
Q Consensus 348 ~~~~~ 352 (359)
+++++
T Consensus 395 ~~~~~ 399 (400)
T 3vax_A 395 KLKPS 399 (400)
T ss_dssp -----
T ss_pred HHhcc
Confidence 88764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=233.18 Aligned_cols=323 Identities=13% Similarity=0.050 Sum_probs=218.6
Q ss_pred cccccccCCCC-CCh-HHHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHh-CCC------Ce---EEcCCchHHHHHH
Q 018243 3 TRTVDLRSDTV-TKP-TEAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVM-GKE------AG---LFVPSGTMGNLIS 69 (359)
Q Consensus 3 ~~~id~~~~~~-~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~-~~~------~~---~~~~~gt~a~~~~ 69 (359)
...|||..+.+ ..+ ++.+.+++.++.. ....|+..++..++++.+++++ +.+ .. ..+.+|++++..+
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~ 120 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIG 120 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHH
Confidence 45799999886 443 3566777776532 2345666677899999999987 554 11 3467777777765
Q ss_pred HHH--hhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 70 VLV--HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 70 l~~--~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
... .+.++||+|++++|+|.+... .++..|.+++.++. ++++.+|+++|++.+++.. .+++++++ +.
T Consensus 121 ~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~i~~-~~ 191 (409)
T 4eu1_A 121 GDLLNRFVANCNRIYGPDVGYPNHES---IFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP-----EGSVILVH-AC 191 (409)
T ss_dssp HHHGGGTSSSCCEEEEESSCCTHHHH---HHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC-----TTCEEEEE-SS
T ss_pred HHHHHHhcCCCCEEEEeCCCcHhHHH---HHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC-----CCcEEEEE-CC
Confidence 432 233688999999999877653 37778989998875 4567889999999997320 34555555 55
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh---cCchhHhhh-cCccE-EEEeccccCCCcee--eE--
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA---LGVPVRRLV-QAADS-ASVCLSKGLGAPVG--SV-- 216 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~-~~~d~-~~~s~~K~~g~~~g--g~-- 216 (359)
++||||.+++.+++++|+++|++||+++|+||+|....... .+.+...+. ...++ ++.|+||.+|.++. ||
T Consensus 192 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~ 271 (409)
T 4eu1_A 192 AHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALH 271 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEE
Confidence 67799999999999999999999999999999965433321 112233332 23344 44599999986542 66
Q ss_pred -EecCHH----HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHHHHHHHhcCCC---
Q 018243 217 -IVGSKE----FIKKARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKLLAEGLNQLKG--- 279 (359)
Q Consensus 217 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~l~~~l~~~~g--- 279 (359)
++.+++ +.+.++........+. +...+.++...++ ...++.++++.++++++.+.|+++ |
T Consensus 272 ~v~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 348 (409)
T 4eu1_A 272 ISTASAEEAKRLVSQLALLIRPMYNNP--PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVH 348 (409)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhcCCC--ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 466777 5555555443333333 2333333333332 224446777888999999999987 5
Q ss_pred -ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 280 -LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+++.. +..+.++|+.++. ++...| +++||.+.|++ |++++ ..+++++++++++|++++
T Consensus 349 ~~~~~~-~~~~~~~~~~~~~-------~~~~~ll~~~gv~v~p~~----Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 349 DWSHIE-RQVGMMAYTGLTR-------EQVELLRSEYHIYMTLNG----RAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CCHHHH-HSCSSEEECCCCH-------HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred Ccceec-CCceEEEEeCCCH-------HHHHHHHHcCCEEEcCCC----EEEEE-ecCHhhHHHHHHHHHHHh
Confidence 55432 3466677754432 334555 67899998864 88886 577888999999998875
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=232.96 Aligned_cols=336 Identities=16% Similarity=0.125 Sum_probs=223.0
Q ss_pred cccccccCCCC---CC-hHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHh--CC-CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTV---TK-PTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVM--GK-EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~---~~-~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~--~~-~~~~~~~~gt~a~~~~l~ 71 (359)
.+++||.++.. .+ .+|.+.+++.+....... .+..+...++++.+++++ +. +..++++||++|+..++.
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~ 122 (439)
T 3dxv_A 43 RELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYR 122 (439)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 35789998866 22 458888887764433222 234567789999999999 44 466899999999999999
Q ss_pred Hhhh-hcCCeEEecCCCcceeeccccccccCCccc--------------eeeecCCCCCC-----CHHHHHHHhcCCCCC
Q 018243 72 VHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHP--------------RTVKNNQDGTM-----DIDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~--------------~~v~~~~~~~~-----~~~~l~~~l~~~~~~ 131 (359)
.++. .++++|++.++.|...+. ......+... ..++.+..+.. |+++|++.+++.
T Consensus 123 ~~~~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--- 197 (439)
T 3dxv_A 123 AIVKATGRSGVIAFAGAYHGCTV--GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--- 197 (439)
T ss_dssp HHHHHHSCCEEEEETTCCCCSSH--HHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS---
T ss_pred HHHHHhCCCEEEEECCCCCCCcH--HHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc---
Confidence 8632 256678877777655443 1133333221 22333322222 689999999410
Q ss_pred ccCCceeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~ 208 (359)
+.+++++|+++++++ ++|.+ .+.+++++|.++|++||+++|+||+|.. +...+. ....+....|++ |+||.
T Consensus 198 -~~~~~~~vi~~p~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g--~g~~g~~~~~~~~~~~~di~--s~sK~ 271 (439)
T 3dxv_A 198 -PAGSIGAAFIEPIQS-DGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHCFEHEGFVPDIL--VLGKG 271 (439)
T ss_dssp -CTTCEEEEEECSSBS-TTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTC--TTTTSSSSGGGGTTCCCSEE--EECGG
T ss_pred -CCCCEEEEEEccccC-CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCchhhHHHhcCCCCCEE--EEcch
Confidence 015788999977666 55655 4556699999999999999999999852 222222 112222245655 77899
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----CCCceE
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----LKGLRV 282 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~~g~~~ 282 (359)
++++.. |++++++++++.+... ..+.++ .+++.++++..+++...+ +..++..++.+++++.|++ .+.+..
T Consensus 272 ~~~G~riG~~~~~~~~~~~~~~~--~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 348 (439)
T 3dxv_A 272 LGGGLPLSAVIAPAEILDCASAF--AMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGD 348 (439)
T ss_dssp GGTTSCCEEEEEEHHHHTSCSSS--SCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred hcCCcceEEEEECHHHHhhhcCC--CcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 975323 7888898888775432 234444 566777777777754322 2455566666666666655 444443
Q ss_pred ecCCccceEEEEEecc------chHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITE------DSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
. +..+.++++.+.. +...+..++.+.|.++||.+.+++. .++|++++...+++++++++++|+++++++.
T Consensus 349 ~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 349 I--RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp E--EEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred E--EEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3 3467788887731 1235678899999889999988765 8899999889999999999999999998764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=225.07 Aligned_cols=304 Identities=18% Similarity=0.159 Sum_probs=218.5
Q ss_pred CCCCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCC
Q 018243 10 SDTVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86 (359)
Q Consensus 10 ~~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~ 86 (359)
++++..++ +.+.+++.+ .....|+. .+...++++.+++++|.+..++++||++|+..++.+++ ++|++|+++.+
T Consensus 27 s~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~ 103 (412)
T 2cb1_A 27 VAAYGFKTLEEGQERFAT--GEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-RPGDEVVAAKG 103 (412)
T ss_dssp CSBCCCSSHHHHHHHHHH--CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETT
T ss_pred cceeecCChHHHHHHhcc--ccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence 33445555 445555442 23344553 47889999999999999988999999999999999887 59999999999
Q ss_pred Ccceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 87 SHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 87 ~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
.|.+.+... ..++..|.+++.++. |+++|++.++ +++++|+++++ +||||.+.+ +++|.++
T Consensus 104 ~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~---l~~i~~l 165 (412)
T 2cb1_A 104 LFGQTIGLFGQVLSLMGVTVRYVDP------EPEAVREALS--------AKTRAVFVETV-ANPALLVPD---LEALATL 165 (412)
T ss_dssp CCHHHHHHHHHTTTTTTCEEEEECS------SHHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC---HHHHHHH
T ss_pred CchhHHHHHHHHHHHcCCEEEEECC------CHHHHHHHhc--------cCCeEEEEeCC-CCCCccccc---HHHHHHH
Confidence 998766411 014567888888864 4899999998 78999999655 459999987 8999999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCH---------------------
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSK--------------------- 221 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~--------------------- 221 (359)
|++||+++|+|++|+.+... .. ....+.|+++.|+||++++|. |++++.++
T Consensus 166 ~~~~~~~li~D~~~~~~~~~--~~---~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (412)
T 2cb1_A 166 AEEAGVALVVDNTFGAAGAL--CR---PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW 240 (412)
T ss_dssp HHHHTCEEEEECGGGTTTTS--CC---GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H
T ss_pred HHHcCCEEEEECCCcccccc--CC---ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchh
Confidence 99999999999998665221 11 122378999999999997753 45555552
Q ss_pred ------HHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEe-cCC-------
Q 018243 222 ------EFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVD-VDA------- 286 (359)
Q Consensus 222 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~------- 286 (359)
++.+.++... ...+. ...+..++.....++.... +.++..++++++.+.|.+.|++... .+.
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~g~--~~~~~~a~~~~~~l~~l~~-~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~ 317 (412)
T 2cb1_A 241 EALRARCFPERVRTLGLSLCGM--ALSPFNAYLLFQGLETVAL-RVARMSETARFLAERLQGHPKVKALRYPGLPEDPAH 317 (412)
T ss_dssp HHHGGGHHHHHHHHHHTTTTCC--CCCHHHHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTH
T ss_pred hccchHHHHHHHHHHHHHhcCC--CCChHHhHHHHcCCchHHH-HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccH
Confidence 3444444332 22332 2345555555656655433 6666778899999999998888743 221
Q ss_pred --------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC------------------------------CcEEEE
Q 018243 287 --------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------------------------STRVRI 328 (359)
Q Consensus 287 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------------------------~~~lRi 328 (359)
..+.++.+.+ . +.+.+.+.|.+.||.+ .++ ...+|+
T Consensus 318 ~~~~~~~~~~~~iv~~~~-~----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~ 391 (412)
T 2cb1_A 318 RNARKYLASGGPILTLDL-G----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRV 391 (412)
T ss_dssp HHHHHHCSSSCSEEEEEC-S----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEE
T ss_pred HHHHHhCCCCceEEEEEe-C----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEE
Confidence 2466788888 4 4556777777788886 331 468999
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q 018243 329 VVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 329 ~~~~~~~~~~i~~~~~~l~~ 348 (359)
+++...++++++.++++|++
T Consensus 392 s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 392 SVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp ECCSSCHHHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHhh
Confidence 99999999999999988864
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=223.52 Aligned_cols=285 Identities=16% Similarity=0.130 Sum_probs=209.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+..+++++|++|+..++.+++ ++||+|+++.|.|.+..... ..++..|.+++.++.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~---- 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA---- 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC----
Confidence 45667999999999999888999999999999998887 59999999999988755310 0356678898888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH-cCcEEEEecccccchhhhcCchhHhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK-HGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~-~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++ +||||.+++ +++|.++|++ +|+++|+|++|..+... .+. .
T Consensus 136 -d~~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~---~~~-~- 197 (404)
T 1e5e_A 136 -IPGEVKKHMK--------PNTKIVYFETP-ANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-D- 197 (404)
T ss_dssp -STTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-G-
T ss_pred -CHHHHHHhcC--------CCCcEEEEECC-CCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC---Ccc-c-
Confidence 8889999998 68999999665 559999987 8999999999 99999999998654431 111 2
Q ss_pred hcCccEEEEeccccCCCce---eeEEecCHHHHH-HHHHHHHhh-CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGSKEFIK-KARRLRKTL-GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL 269 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (359)
.+.|+++.|+||+++++. +|++++++++++ .++.....+ +.+ .++..++++..+++.... +.++..++.+.
T Consensus 198 -~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~--~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 273 (404)
T 1e5e_A 198 -FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSV--ISPHDAWLITRGLSTLNI-RMKAESENAMK 273 (404)
T ss_dssp -GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCC--CCHHHHHHHHHHHTTHHH-HHHHHHHHHHH
T ss_pred -cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHhHhHHHH-HHHHHHHHHHH
Confidence 378999999999998765 588999988877 665443333 333 345556666667765333 56666777788
Q ss_pred HHHHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceecc---C---------
Q 018243 270 LAEGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP---E--------- 321 (359)
Q Consensus 270 l~~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~--------- 321 (359)
+.+.|++.+.+. +..+ ...++++.+.++. ..+.+.+.|.+.||.+.. +
T Consensus 274 l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~ 349 (404)
T 1e5e_A 274 VAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS----GFEGAKKLLDNLKLITLAVSLGGCESLIQHP 349 (404)
T ss_dssp HHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT----HHHHHHHHHHTCSSSEESSCCCSSSCEEECG
T ss_pred HHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC----CHHHHHHHHHhCCCceeccCCCCcceeeecc
Confidence 888887764332 1111 1137777778765 234455666788884321 1
Q ss_pred ----------------C--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 322 ----------------S--STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 322 ----------------~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+ .+++|+++. . ++++++++.|+++++++..+
T Consensus 350 ~~~~~~~~~~~~~~~~g~~~~~iRis~g--~--e~~~~li~~l~~al~~~~~~ 398 (404)
T 1e5e_A 350 ASMTHAVVPKEEREAAGITDGMIRLSVG--I--EDADELIADFKQGLDALLRS 398 (404)
T ss_dssp GGTTTTTSCHHHHHHTTCCTTEEEEECC--S--SCHHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeC--C--CCHHHHHHHHHHHHHHHHHh
Confidence 1 478999996 3 89999999999999887654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=231.76 Aligned_cols=327 Identities=14% Similarity=0.069 Sum_probs=222.3
Q ss_pred ccccccCCCC-C-----ChHHHHHHHHHcCC----CCCCccCCChHHHHHHHHHHHHh-CCC-------CeEE--cCCch
Q 018243 4 RTVDLRSDTV-T-----KPTEAMRAAMASAE----VDDDVLMHDPTAFRLETEMAKVM-GKE-------AGLF--VPSGT 63 (359)
Q Consensus 4 ~~id~~~~~~-~-----~~~~~~~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~-~~~-------~~~~--~~~gt 63 (359)
..|||..+.+ . .+.+++.+++.+.. .....|....+..++++.+++++ |.+ ..++ ++||+
T Consensus 50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt 129 (448)
T 3meb_A 50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGT 129 (448)
T ss_dssp TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHH
Confidence 3588887765 2 22388888844322 23445766778899999999998 765 2355 78888
Q ss_pred HHHHH--HHHHhhhhcCCeEEecCCCcceeeccccccc----cCCccceeeec-CC--CCCCCHHHHHHHhcCCCCCccC
Q 018243 64 MGNLI--SVLVHCETRGSEVILGDNSHIHIYENGGIST----IGGVHPRTVKN-NQ--DGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 64 ~a~~~--~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~----~~g~~~~~v~~-~~--~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
+|+.. .+..++ .+||+|++++|+|.+... .++ ..|.+++.++. +. ++.+|++++++.+++..
T Consensus 130 ~al~l~~~~~~~~-~~gd~Vlv~~p~~~~~~~---~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~----- 200 (448)
T 3meb_A 130 GSLHIGFEFLHLW-MPKAEFYMPSTTWPNHYG---IYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAP----- 200 (448)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEESSCCTHHHH---HHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSC-----
T ss_pred HHHHHHHHHHHHh-CCCCEEEECCCCCHhHHH---HHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCC-----
Confidence 89877 445555 589999999999877653 366 78999999976 54 47899999999998421
Q ss_pred CceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc---CchhHhh-hcCccEE-EEeccccC
Q 018243 135 PTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL---GVPVRRL-VQAADSA-SVCLSKGL 209 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~---~~~~~~~-~~~~d~~-~~s~~K~~ 209 (359)
++++++++ +.++||||..++.+++++|+++|++||+++|+|++|........ ..+...+ ....+++ +.|+||.|
T Consensus 201 ~~~~~v~~-~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 279 (448)
T 3meb_A 201 EKSIFLFH-ACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF 279 (448)
T ss_dssp TTCEEEEE-SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS
T ss_pred CCcEEEEe-CCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccC
Confidence 23556666 66677999999999999999999999999999999653332210 1122222 1234544 55999999
Q ss_pred CCcee--eEE--ec---------CH----HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhH
Q 018243 210 GAPVG--SVI--VG---------SK----EFIKKARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGD 263 (359)
Q Consensus 210 g~~~g--g~~--~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~ 263 (359)
|.++. |++ +. ++ ++.+.+.........+. +...+.++...+. +..++.++++
T Consensus 280 g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 357 (448)
T 3meb_A 280 GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMS--AIHGAYIVQVIVHDKRLLQMFYDNVKEMSARI 357 (448)
T ss_dssp CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSC--CHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCc--cHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 86532 665 44 45 55555554433333222 2333333333332 2244567778
Q ss_pred HHHHHHHHHHHhcC--CC------ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCC
Q 018243 264 HKKAKLLAEGLNQL--KG------LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQI 334 (359)
Q Consensus 264 ~~~~~~l~~~l~~~--~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~ 334 (359)
.++++++.+.|+++ |+ +.+.. +..+.+.|..++. ++...| .++||.+.++.. ||++. ..
T Consensus 358 ~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~~ll~~~gV~v~~G~g---Ris~a-~~ 425 (448)
T 3meb_A 358 HRMRSLLHASLAKRKTPGPGSKGTWDHIL-TAIGMFTFTGLTP-------EHVDYLKEKWSIYLVKAGG---RMSMC-GL 425 (448)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTTCCCTHHH-HCCSSEEECCCCH-------HHHHHHHHHHCEEECSGGG---EEEGG-GC
T ss_pred HHHHHHHHHHHHhhCCCCcCcccccceeC-CCceEEEecCCCH-------HHHHHHHHhCCEEEeCCCc---EEEEe-cC
Confidence 88999999999987 45 44432 3466777766542 455555 789999988653 99986 45
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 018243 335 SANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~~~~ 354 (359)
+++++++++++|+++++++.
T Consensus 426 ~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 426 TESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp CTTTHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 78889999999999988543
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=230.55 Aligned_cols=324 Identities=15% Similarity=0.063 Sum_probs=217.6
Q ss_pred ccccccCCCC-CC---h--HHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhCCC--------CeEE--cCCchHH
Q 018243 4 RTVDLRSDTV-TK---P--TEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMGKE--------AGLF--VPSGTMG 65 (359)
Q Consensus 4 ~~id~~~~~~-~~---~--~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~--------~~~~--~~~gt~a 65 (359)
..|||..+.+ .. | .+.+.+++.+... ....|....+..++++.++++++.. ..++ ++||+++
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 4688888765 21 1 2578887765432 3445666677899999999998643 2244 7888889
Q ss_pred HHHHHHHhh--hhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 66 NLISVLVHC--ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 66 ~~~~l~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
+..++..+. .++||+|++++|+|.+... .++..|.+++.++.+ .++.+|++.+++.+++.. +++++++
T Consensus 109 l~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~v~ 180 (401)
T 7aat_A 109 LRVGANFLQRFFKFSRDVYLPKPSWGNHTP---IFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-----EKSIILL 180 (401)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCCTTHHH---HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-----TTCEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCchhHHH---HHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC-----CCcEEEE
Confidence 988876654 2589999999999877653 367788898888753 468899999988887521 4677888
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc---CchhHhhh-cCcc-EEEEeccccCCCcee--
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL---GVPVRRLV-QAAD-SASVCLSKGLGAPVG-- 214 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~---~~~~~~~~-~~~d-~~~~s~~K~~g~~~g-- 214 (359)
+ +.+|||||.+++.+++++|+++|++||+++|+||+|........ ..+...+. ...+ +++.|+||.||.++.
T Consensus 181 i-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri 259 (401)
T 7aat_A 181 H-ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA 259 (401)
T ss_dssp E-SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE
T ss_pred e-CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCce
Confidence 7 55677999999999999999999999999999999654333211 11122221 1233 555699999986542
Q ss_pred eEEec---CHH----HHHHHHHHHHhhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHhcC-
Q 018243 215 SVIVG---SKE----FIKKARRLRKTLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLNQL- 277 (359)
Q Consensus 215 g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~~- 277 (359)
|+++. +++ +...++........+.. ...+.++...+ ....++.++++.++++++.+.|+++
T Consensus 260 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 260 GAFTVICRDAEEAKRVESQLKILIRPMYSNPP--MNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHhccCCCC--hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66553 666 44444444433333332 22222222222 3334446677888999999999887
Q ss_pred --CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 278 --KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 278 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+++.+. .+..+.++|+.++ .+.+...+.++||.+.++ +|++++ ..+++++++++++|++++
T Consensus 338 ~~~~~~~~-~~~~~~~~~~~~~------~~~~~~ll~~~gi~v~~~----~Ris~~-~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 338 SSHNWQHI-TDQIGMFCFTGLK------PEQVERLTKEFSIYMTKD----GRISVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CCSCCHHH-HHCCSSEEECCCC------HHHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred CCCCCcee-cCCcceEEecCCC------HHHHHHHHHhCCEeccCC----CeEEec-cCChhhHHHHHHHHHHHh
Confidence 125443 2346667776554 234433448899999765 599997 466677999999998875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=232.98 Aligned_cols=328 Identities=15% Similarity=0.088 Sum_probs=216.4
Q ss_pred cccccccCCCCC-ChHHHHHHHHHcCCC------CCCccCCChHHHHHHHHHHHH--hC-CC-Ce-EEcCCchHHHHHHH
Q 018243 3 TRTVDLRSDTVT-KPTEAMRAAMASAEV------DDDVLMHDPTAFRLETEMAKV--MG-KE-AG-LFVPSGTMGNLISV 70 (359)
Q Consensus 3 ~~~id~~~~~~~-~~~~~~~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~--~~-~~-~~-~~~~~gt~a~~~~l 70 (359)
..+|||.++.+. .++|.+.+++.+... ....|+..++..++++.++++ +| .+ .. ++++|+++++.. +
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~-~ 111 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFR-L 111 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHH-H
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHH-H
Confidence 357899888665 345777777765331 123465556789999999999 46 32 23 455555666665 4
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCcc-ceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVH-PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
..++ .+|++|+++.|+|.+... .+...|.+ ++.++.+.++.++.+ + ++. +++++|++++ ++||
T Consensus 112 ~~~~-~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~-l----~~~------~~~~~v~l~~-p~np 175 (400)
T 3asa_A 112 LSFF-GPNQTVAIQDPSYPAYLD---IARLTGAKEIIALPCLQENAFFPE-F----PED------THIDILCLCS-PNNP 175 (400)
T ss_dssp HHHH-CSSCEEEEEESCCHHHHH---HHHHTTCSEEEEEECCGGGTTCCC-C----CTT------CCCSEEEEES-SCTT
T ss_pred HHHc-CCCCEEEECCCCcHHHHH---HHHHcCCcceEecccchhcCcccC-h----hhc------cCccEEEEeC-CCCC
Confidence 5555 589999999999877554 36667888 888876543222211 1 110 3678999975 5679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc--EEEEeccccCCCce-e-eEEecCHHH-
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD--SASVCLSKGLGAPV-G-SVIVGSKEF- 223 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d--~~~~s~~K~~g~~~-g-g~~~~~~~~- 223 (359)
||.++|.+++++|+++|+++|+++|+|++|........ ..+...+....| +++.|+||++|.++ . ||+++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~ 255 (400)
T 3asa_A 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELT 255 (400)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCB
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhc
Confidence 99999999999999999999999999999763222111 112323321133 66679999998543 2 888888777
Q ss_pred ------HHHHHHHHHh-hCCCcchhHHHHHHHHHHHHH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 224 ------IKKARRLRKT-LGGGMRQVGVLCAAALVALQE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 224 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
++.+...... ...+. +...+.++...++. ..++.++++.++++++.+.|++. ++++.. +..++++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~ 331 (400)
T 3asa_A 256 YADGHFVIQDWERFLSTTFNGA--SIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEVFG-GEHAPYLWVK 331 (400)
T ss_dssp CTTSCBHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEEEE-CSSSSEEEEE
T ss_pred cchhhhHHHHHHHHhccCccCC--ChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeC-CCCceEEEEe
Confidence 5554322221 11122 33444445555554 24446677888999999999998 888753 3468889998
Q ss_pred -eccchHHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 296 -ITEDSKLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 296 -~~~~~~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
++. +.+..++.+.| +++||.+.++. ..++|+++ ..+++++++++++|+++++++.-
T Consensus 332 ~~~~--~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~~ 395 (400)
T 3asa_A 332 PTQA--NISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS--LGKREDILAACERLQMAPALQSH 395 (400)
T ss_dssp CCCT--TCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC--CSCHHHHHHHHHHHHC-------
T ss_pred ccCC--CCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhhhh
Confidence 753 23455788877 46799997652 46799996 58899999999999999887653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=231.00 Aligned_cols=315 Identities=18% Similarity=0.159 Sum_probs=223.0
Q ss_pred HHHHHHHHHcCCCC-C-CccC----CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcce
Q 018243 17 TEAMRAAMASAEVD-D-DVLM----HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90 (359)
Q Consensus 17 ~~~~~~a~~~~~~~-~-~~~~----~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~ 90 (359)
+|++.+++.+.... . ..|+ ..+...++++.+++++|.+..++++||++|+..++.++..++|++|+++.++|.+
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~ 94 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIA 94 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTH
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHh
Confidence 36666666553321 1 1132 2334889999999999999889999999999999999822589999999999988
Q ss_pred eeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc
Q 018243 91 IYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH 169 (359)
Q Consensus 91 ~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~ 169 (359)
... .+...|.+++.++.+. ++.+|+++|++.++ +++++|+++ ||||... ++++|.++|+++
T Consensus 95 ~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~----~~~G~~~---~~~~i~~~~~~~ 156 (418)
T 2c81_A 95 TAT---AVLNVNALPVFVDVEADTYCIDPQLIKSAIT--------DKTKAIIPV----HLFGSMA---NMDEINEIAQEH 156 (418)
T ss_dssp HHH---HHHHTTCEEEEECBCTTTCSBCHHHHGGGCC--------TTEEEECCB----CCTTCCC---CHHHHHHHHHHT
T ss_pred HHH---HHHHcCCEEEEEecCCCCCCcCHHHHHHhhC--------CCCeEEEEe----CCcCCcc---cHHHHHHHHHHC
Confidence 765 2667898999998765 68899999999998 678888863 3789864 489999999999
Q ss_pred CcEEEEecccccchhhhcCchhHhhhcCccEEEEec--cccCCCceeeEEec-CHHHHHHHHHHHHhhCC----------
Q 018243 170 GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCL--SKGLGAPVGSVIVG-SKEFIKKARRLRKTLGG---------- 236 (359)
Q Consensus 170 ~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~--~K~~g~~~gg~~~~-~~~~~~~~~~~~~~~~~---------- 236 (359)
|+++|+|++|+.+.. ..+..... ..|+++.|+ ||+++++.||+++. ++++.+.++........
T Consensus 157 ~~~li~D~a~~~~~~-~~~~~~~~---~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (418)
T 2c81_A 157 NLFVIEDCAQSHGSV-WNNQRAGT---IGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMH 232 (418)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTS---SSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCT
T ss_pred CCEEEEECcccccCc-cCCEeccc---ccceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccccccc
Confidence 999999999877653 12222222 235555555 99998655588887 57888887755432110
Q ss_pred Ccc--------------hhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc----ce-EEEEEec
Q 018243 237 GMR--------------QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE----TN-IVYFEIT 297 (359)
Q Consensus 237 ~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~----~~-~~~~~~~ 297 (359)
.+. .....++.....++. .+...++..++++++.+.|+++|++++..++.. .. ++.+.++
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 311 (418)
T 2c81_A 233 GDMQLVKKGDIQGSNYCLSEFQSAILLDQLQE-LDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFD 311 (418)
T ss_dssp TCBSEEECCSSCCCBCCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEEC
T ss_pred chhhccccccccCcCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEc
Confidence 011 122223333333433 333667777889999999999889887533322 11 2336665
Q ss_pred cc--hHHHHHHHHHHHHhc-Cce---eccCC----------------------------------------CcEEEEEeC
Q 018243 298 ED--SKLYAACLLKKLEEH-GVL---VMPES----------------------------------------STRVRIVVH 331 (359)
Q Consensus 298 ~~--~~~~~~~~~~~l~~~-gi~---~~~~~----------------------------------------~~~lRi~~~ 331 (359)
.. .+.+..++.+.|.++ ||. +.++. ...+|++++
T Consensus 312 ~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 391 (418)
T 2c81_A 312 PVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHA 391 (418)
T ss_dssp GGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGG
T ss_pred cccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCC
Confidence 20 024678999999777 999 64321 147999999
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHH
Q 018243 332 HQI-SANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 332 ~~~-~~~~i~~~~~~l~~~~~~~~ 354 (359)
..+ +++|+++++++|+++++++.
T Consensus 392 ~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 392 ILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhc
Confidence 999 99999999999999987654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=227.08 Aligned_cols=336 Identities=16% Similarity=0.108 Sum_probs=225.0
Q ss_pred ccccccCCC---CCC-hHHHHHHHHHcCCCCCCc--c-C-CChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDT---VTK-PTEAMRAAMASAEVDDDV--L-M-HDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~---~~~-~~~~~~~a~~~~~~~~~~--~-~-~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.++||.++. +.+ ++|++.+++.+....... + + ..+...++++.++++++. +..++++||++|+..++..+
T Consensus 44 ~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~ 123 (429)
T 1s0a_A 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMA 123 (429)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 468887764 222 458888888764422111 1 1 245668899999999964 34588899999999999875
Q ss_pred hh--h----cCCeEEecCCCcceeeccccccccCC-------------ccceeeecCC-----C-CCCCHHHHHHHhcCC
Q 018243 74 CE--T----RGSEVILGDNSHIHIYENGGISTIGG-------------VHPRTVKNNQ-----D-GTMDIDLIEAAIRDP 128 (359)
Q Consensus 74 ~~--~----~g~~vl~~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~-----~-~~~~~~~l~~~l~~~ 128 (359)
.. + ++++|++.+|+|..... ......+ ..+..++.+. . +.+|+++|++.+++.
T Consensus 124 ~~~~~~~g~~~~~vi~~~~~yh~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 201 (429)
T 1s0a_A 124 LQYWQAKGEARQRFLTFRNGYHGDTF--GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH 201 (429)
T ss_dssp HHHHHHHTCCCCEEEEETTCCCCSSH--HHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH
T ss_pred HHHhcccCCCCCeEEEECCCCCCCch--hhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC
Confidence 41 2 48899999987654322 0111111 1233343321 2 347999999998731
Q ss_pred CCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhcCccEEEEecc
Q 018243 129 KGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQAADSASVCLS 206 (359)
Q Consensus 129 ~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~~ 206 (359)
. +++++|+++++.+||||. ..+.+++++|.++|++||+++|+||+|. ++..+ ............|++ ++|
T Consensus 202 ~-----~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g-~~~~~~~~~~~~d~~--t~s 273 (429)
T 1s0a_A 202 R-----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KLFACEHAEIAPDIL--CLG 273 (429)
T ss_dssp T-----TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEE--EEC
T ss_pred C-----CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccc-hHHHhhhcCCCCCEE--Eec
Confidence 0 357777774442779996 5567889999999999999999999985 32111 111112122245655 677
Q ss_pred ccCCCc-ee-eEEecCHHHHHHHHHHH--H-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---
Q 018243 207 KGLGAP-VG-SVIVGSKEFIKKARRLR--K-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL--- 277 (359)
Q Consensus 207 K~~g~~-~g-g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~--- 277 (359)
|+++++ .+ |++++++++++.+.... . ..+.++..+++.++++..+++...+ ...++..++++++.+.|+++
T Consensus 274 K~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 353 (429)
T 1s0a_A 274 KALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353 (429)
T ss_dssp GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred ccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999765 44 88888988887764310 0 1234454566666677777754322 35567778888999988875
Q ss_pred CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
|++... +..++++++.++.. .+..++.+.|.++||.+.+.+ .++|++++...+++++++++++|+++++++.
T Consensus 354 ~~~~~~--~~~g~~~~~~~~~~--~~~~~l~~~l~~~Gi~v~~~~-~~iRis~~~~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 354 EMVADV--RVLGAIGVVETTHP--VNMAALQKFFVEQGVWIRPFG-KLIYLMPPYIILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TTEEEE--EEETTEEEEEESSC--BCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCEEEE--EEeeEEEEEEECCc--ccHHHHHHHHHHCCCEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 555432 23567888888642 356789999989999998864 7899999889999999999999999887653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=231.91 Aligned_cols=325 Identities=11% Similarity=0.060 Sum_probs=220.3
Q ss_pred cccccccCCCC---C---ChHHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhCC--------CCeEE--cCCchH
Q 018243 3 TRTVDLRSDTV---T---KPTEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMGK--------EAGLF--VPSGTM 64 (359)
Q Consensus 3 ~~~id~~~~~~---~---~~~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~ 64 (359)
+.+|||.++.+ . .|+|.+.+++.+... ....|+..++..++++.++++++. +..++ ++||++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~ 105 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG 105 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchh
Confidence 35789999863 1 445888888876422 233466667789999999999822 22344 788888
Q ss_pred HHHHHHHHhh-hhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 65 GNLISVLVHC-ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 65 a~~~~l~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
|+..++..+. ..+||+|+++.|+|.+... .++..|.+++.++.+ +++.+|++++++.+++.. +++++++
T Consensus 106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~v~ 177 (396)
T 2q7w_A 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKS---VFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-----AGDVVLF 177 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHH---HHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-----TTCEEEE
T ss_pred hHHHHHHHHHHhCCCCEEEEcCCCchhHHH---HHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC-----CCCEEEE
Confidence 9988887654 2489999999999887553 367778888888764 567789999999998420 2456666
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhhc-C-ccEEEEeccccCCCcee--e
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLVQ-A-ADSASVCLSKGLGAPVG--S 215 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~~-~-~d~~~~s~~K~~g~~~g--g 215 (359)
+ +.++||||.+++.+++++|+++|++||+++|+||+|....... ...+...+.. . ..+++.|+||.+|.++. |
T Consensus 178 ~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG 256 (396)
T 2q7w_A 178 H-GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVG 256 (396)
T ss_dssp E-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCE
T ss_pred e-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccc
Confidence 6 6667799999999999999999999999999999975433221 1123333321 2 23556699999985432 7
Q ss_pred EEec---CHH----HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHHHHHHHhcCC-
Q 018243 216 VIVG---SKE----FIKKARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKLLAEGLNQLK- 278 (359)
Q Consensus 216 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~l~~~l~~~~- 278 (359)
+++. +++ +.+.+.........+ .+...+.++..+++ +..++..+++.++++++.+.|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 334 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKAAIRANYSN--PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA 334 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSS--CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhccCC--CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7764 564 444443322221112 13344444444442 3444466678888999999999882
Q ss_pred --CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 279 --GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 279 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++++.. +..+.++|+.++. ..+.+.|.++||.+.++ +|++++ ..+++++++++++|++++
T Consensus 335 ~~~~~~~~-~~~~~~~~~~~~~------~~~~~~l~~~gv~v~~~----~Ris~~-~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 335 NRDFSFII-KQNGMFSFSGLTK------EQVLRLREEFGVYAVAS----GRVNVA-GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CSCCTHHH-HCCSSEEECCCCH------HHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred CCCcceec-CCCceEEEecCCH------HHHHHHHHhcCeeecCC----ceEEEe-ecCHHHHHHHHHHHHhcC
Confidence 266533 3456677765532 35666678899999874 699997 348999999999998753
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=225.49 Aligned_cols=301 Identities=14% Similarity=0.069 Sum_probs=217.0
Q ss_pred ccccccCCCCC-ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhC---CC--CeEEcCCchHHHHHHHHHhhh
Q 018243 4 RTVDLRSDTVT-KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMG---KE--AGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 4 ~~id~~~~~~~-~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~---~~--~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.+|||.++.+. ++++.+.+++.+.... ...|.. +...++++.++++++ .+ ..++++||++++..++..+
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~-- 96 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF-- 96 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--
Confidence 46899998774 4569999999886522 223433 357899999999999 43 3466667778888777776
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
|++|+++ |+|.+... .++..|.+++.++.++++.+|++++ . ++++|+++++ +||||.+++
T Consensus 97 --gd~Vl~~-p~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l----~---------~~~~v~l~~p-~nptG~~~~ 156 (335)
T 1uu1_A 97 --DRSVFFP-PTYSCYRI---FAKAVGAKFLEVPLTKDLRIPEVNV----G---------EGDVVFIPNP-NNPTGHVFE 156 (335)
T ss_dssp --SEEEECS-SSCHHHHH---HHHHHTCEEEECCCCTTSCCCCCCC----C---------TTEEEEEESS-CTTTCCCCC
T ss_pred --CCcEEEC-CCcHHHHH---HHHHcCCeEEEeccCCCCCCCHHHc----C---------CCCEEEEeCC-CCCCCCCCC
Confidence 7899999 99877553 3667788998888776667776665 2 4678888666 679999999
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh-h-cCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHH
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-V-QAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLR 231 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~-~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~ 231 (359)
.+++.+++++| | ++|+|++|..+.. + +.... . .+.++++.|+||++|.++ . |++++++++.+.++...
T Consensus 157 ~~~l~~l~~~~---~-~li~De~~~~~~~---~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~ 228 (335)
T 1uu1_A 157 REEIERILKTG---A-FVALDEAYYEFHG---E-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR 228 (335)
T ss_dssp HHHHHHHHHTT---C-EEEEECTTHHHHC---C-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHS
T ss_pred HHHHHHHHHhC---C-EEEEECcchhhcc---h-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhc
Confidence 77777777766 7 8999999753221 1 11121 1 134466779999998543 2 88888999988877654
Q ss_pred HhhCCCcchhHHHHHHHHHHHHH--hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHH
Q 018243 232 KTLGGGMRQVGVLCAAALVALQE--NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLK 309 (359)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
..+ ..+...+.++..+++. +.++.+++..++++++.+.|+++ |+.+. +..++++|+.++. .+..++.+
T Consensus 229 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~---~~~~~~~~ 298 (335)
T 1uu1_A 229 LPF----NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT--DSRGNFVFVFMEK---EEKERLLE 298 (335)
T ss_dssp CTT----CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCCSSEEEEECCT---HHHHHHHH
T ss_pred CCC----CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc--CCCCeEEEEECCC---CCHHHHHH
Confidence 332 2344445555555543 44556777888899999999988 77653 3467889988864 46778999
Q ss_pred HHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 310 KLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 310 ~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.|.++||.+.+ ..+++|++++ +++++++++++|+++
T Consensus 299 ~l~~~gi~v~~-~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 299 HLRTKNVAVRS-FREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHTEEEEE-ETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred HHHHCCEEEEE-CCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 99889999988 4578999984 467899999988753
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=225.04 Aligned_cols=329 Identities=17% Similarity=0.146 Sum_probs=219.8
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC--------ccCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD--------VLMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~ 71 (359)
.++|.++... ++|.+.+++.+...... .|...+....++ +.+++++|.+.. +++++|++|+..++.
T Consensus 27 ~i~l~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~ 105 (417)
T 3n0l_A 27 GLEMIASENF-TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA 105 (417)
T ss_dssp SEECCTTCCC-CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred CeeeecccCC-CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHH
Confidence 4556543332 36889999887652221 233334444444 488999999876 888999999999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCC--ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGG--VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ ++||+|+++.++|.+....+......| ..++.++.+.++.+|+++|++.+++ +++++|++.+ ++|
T Consensus 106 ~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~-~~~- 175 (417)
T 3n0l_A 106 ALI-NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK-------EKPKLIVCGA-SAY- 175 (417)
T ss_dssp HHS-CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH-------HCCSEEEECC-SSC-
T ss_pred Hhc-CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh-------cCCeEEEECC-ccc-
Confidence 987 599999999999876543222233333 3345555666788999999999984 4688888744 343
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC-HHHHHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS-KEFIKKAR 228 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~-~~~~~~~~ 228 (359)
|...+ +++|.++|++||+++|+|++|..+... .+.....+ ...|+++.|+||+++++.||+++++ +++.+.++
T Consensus 176 -G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~-~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 176 -ARVID---FAKFREIADEIGAYLFADIAHIAGLVV-AGEHPSPF-PYAHVVSSTTHKTLRGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp -CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHH-TTSSCCCT-TTCSEEEEESSTTTCSCSCEEEEESCHHHHHHHH
T ss_pred -CccCC---HHHHHHHHHHcCCEEEEECccchhhhh-cccCCCcc-ccceEEEeeCccccCCCCeeEEEECCHHHHHHHh
Confidence 77776 899999999999999999998655443 22211112 2578999999999977777888887 78888876
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
........+. ......++...++ +...++.+++..++++++.+.|++. |+.+...+..++++|+.+.. .+.+.
T Consensus 250 ~~~~~~~~~~-~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~ 326 (417)
T 3n0l_A 250 SAIFPGIQGG-PLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLD-REFSG 326 (417)
T ss_dssp HHHTTTTCSS-CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT-SSSCH
T ss_pred hhhCCcccCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEccc-CCCCH
Confidence 5544322211 1222222222223 2333457777888899999999985 88875434467788888764 23467
Q ss_pred HHHHHHHHhcCceeccC----------CCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPE----------SSTRVRIVVHH----QISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~----------~~~~lRi~~~~----~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+.|.++||.+.+. ....+|+++.. .++++++++++++|++++++.
T Consensus 327 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 327 KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 78888899999998532 23569998642 367899999999999998654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=230.56 Aligned_cols=319 Identities=17% Similarity=0.091 Sum_probs=207.2
Q ss_pred hHHHHHHHHHcCCCCCC--------ccCCChHHHHHH----HHHHHHhCCCC----e-EEcCCchHHHHHHHHHhhhhcC
Q 018243 16 PTEAMRAAMASAEVDDD--------VLMHDPTAFRLE----TEMAKVMGKEA----G-LFVPSGTMGNLISVLVHCETRG 78 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~----~~la~~~~~~~----~-~~~~~gt~a~~~~l~~~~~~~g 78 (359)
++|++++++.+...+.. .|+..+...++| +.++++||.+. + ++++||++|+..++.+++ ++|
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~-~pG 144 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL-QPH 144 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-CSC
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc-CCC
Confidence 56999999987654332 123334344565 88999999987 3 556799999999999998 599
Q ss_pred CeEEecCCCcceeecccc-----ccccCCcc--ceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 79 SEVILGDNSHIHIYENGG-----ISTIGGVH--PRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~-----~~~~~g~~--~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
|+|+++++.|.+.+..+. ...+.|.. ++.++.+ +++.+|+++|++.++. .++++|++ +.++||
T Consensus 145 D~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~-------~~~klIi~-~~s~~~- 215 (490)
T 2a7v_A 145 DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-------FRPRLIIA-GTSAYA- 215 (490)
T ss_dssp EECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH-------HCCSEEEE-CCSSCC-
T ss_pred CEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh-------cCCcEEEE-cCCCCC-
Confidence 999999998865432111 12344543 3344444 5688999999999973 36778877 444445
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHH--------
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE-------- 222 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~-------- 222 (359)
... ++++|+++|++||+++++|++|..|... .+....++ .++|++++|+||+|++|.||+++++++
T Consensus 216 -~~~---dl~~i~~ia~~~g~~livD~Ah~~glv~-~g~~~~~~-~~aDiv~~S~hK~l~Gp~GG~i~~~~~~~~~~~~~ 289 (490)
T 2a7v_A 216 -RLI---DYARMREVCDEVKAHLLADMAHISGLVA-AKVIPSPF-KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKT 289 (490)
T ss_dssp -SCC---CHHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCGG-GTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTT
T ss_pred -Ccc---cHHHHHHHHHHcCCEEEEcccccccccc-CCcCCCCC-CCCCEEEECCcccCccccchheeeccchhcccccc
Confidence 333 4899999999999999999999776543 23222233 378999999999998888898887653
Q ss_pred -------HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE
Q 018243 223 -------FIKKARRLRKTLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI 291 (359)
Q Consensus 223 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 291 (359)
+.++++........+......+ ++...++. ...+++.++..+++++|++.|++. |+++..++...++
T Consensus 290 ~~~~~~~l~~~i~~~~~~g~qggp~~~~i-aAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~l 367 (490)
T 2a7v_A 290 GREIPYTFEDRINFAVFPSLQGGPHNHAI-AAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHL 367 (490)
T ss_dssp EEEEECCCHHHHHHHHTTTTCCSCCHHHH-HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred cchhhHHHHHHHHHHhcccCCCCchHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeE
Confidence 4455543322211111112222 22222332 222447778889999999999998 9998654446778
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCceec----cC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHHHH
Q 018243 292 VYFEITEDSKLYAACLLKKLEEHGVLVM----PE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+++.+.. .+.+..++.+.|.+.||.+. |+ .+..||++. +.+.+++|++++++.|.++++..
T Consensus 368 v~vdl~~-~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 368 VLVDLRP-KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp EEEECTT-TTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 8998875 34567888999999999984 33 346799954 44689999999999999988643
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=223.21 Aligned_cols=329 Identities=17% Similarity=0.139 Sum_probs=212.4
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC--------ccCCCh---HHHH-HHHHHHHHhCCCCe-EEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD--------VLMHDP---TAFR-LETEMAKVMGKEAG-LFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~---~~~~-l~~~la~~~~~~~~-~~~~~gt~a~~~~l~ 71 (359)
.++|..+.... +|.+.+++.+...... .|.... ...+ .++.+++++|.+.. ++++||++|+..++.
T Consensus 34 ~i~l~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~ 112 (425)
T 3ecd_A 34 QVELIASENIV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVML 112 (425)
T ss_dssp SEECCTTCCCC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred ceeeecccCCC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHH
Confidence 35565443333 7899999987653211 111111 2233 34778899999877 559999999999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccc--eeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHP--RTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~--~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
+++ ++||+|+++.++|.+....+......|..+ +.++.+ +++.+|+++|++.+++ +++++|+++++ +|
T Consensus 113 ~~~-~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~~-~~ 183 (425)
T 3ecd_A 113 ALA-KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ-------HKPSLIIAGFS-AY 183 (425)
T ss_dssp HHC-CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH-------HCCSEEEEECS-CC
T ss_pred Hcc-CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh-------cCCcEEEEccc-cC
Confidence 887 599999999999877332122233445433 344444 3478899999999974 47889998654 44
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC-HHHHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS-KEFIKKA 227 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~-~~~~~~~ 227 (359)
| .. .++++|.++|++||+++|+|++|..+... .+.....+ ...|+++.|+||+++++.||+++++ +.+.+.+
T Consensus 184 ~--~~---~~l~~i~~l~~~~~~~li~De~~~~g~~~-~~~~~~~~-~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 184 P--RK---LDFARFRAIADSVGAKLMVDMAHIAGVIA-AGRHANPV-EHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKI 256 (425)
T ss_dssp C--SC---CCHHHHHHHHHHHTCEEEEECGGGHHHHH-TTSSCCGG-GTCSEEEEESSGGGCCCSCEEEEESCHHHHHHH
T ss_pred C--Cc---CCHHHHHHHHHHcCCEEEEECcChHhhhh-cccccCch-hcCcEEEecCCcccCCCCcEEEEeCCHHHHHHH
Confidence 4 33 35899999999999999999998665543 22222222 2478889999999977777888886 6677766
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
.........+.. .....++...++ ....++..++..++++++.+.|++. |+++..++..++++++.++. .+.+
T Consensus 257 ~~~~~~~~~~~~-~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~ 333 (425)
T 3ecd_A 257 NSAVFPGLQGGP-LMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRP-KGLK 333 (425)
T ss_dssp HHHHC-----CC-CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCC
T ss_pred HhhhCccccCCc-cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCC-CCCC
Confidence 544332211111 222222222222 2334457778888999999999997 88876544567888888864 2346
Q ss_pred HHHHHHHHHhcCceec----cC------CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHHHH
Q 018243 304 AACLLKKLEEHGVLVM----PE------SSTRVRIVV----HHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 304 ~~~~~~~l~~~gi~~~----~~------~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+.+.|.++||.+. |+ ...++|+++ ...++++++++++++|++++++.
T Consensus 334 ~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 334 GAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 7788889999999987 43 124799984 33456999999999999998876
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=227.51 Aligned_cols=282 Identities=19% Similarity=0.188 Sum_probs=210.3
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++++.|.+.+... ......|++++.++.+
T Consensus 80 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~--- 155 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM--- 155 (430)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 368889999999999999989999999999999999887 59999999999998766411 1345678899888766
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++.| |||.+.+ +++|.++|+++|+++|+|++++.+.. ..+.
T Consensus 156 --d~~~l~~ai~--------~~t~~v~~e~p~N-ptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~------~~~~ 215 (430)
T 3ri6_A 156 --DSLAVEHACD--------ETTKLLFLETISN-PQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL------LEAK 215 (430)
T ss_dssp --CHHHHHHHCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT------CCGG
T ss_pred --CHHHHHHhhC--------CCCeEEEEECCCC-CCCeecC---HHHHHHHHHHcCCEEEEECCCccccc------CChH
Confidence 9999999998 7899999966555 9999987 88999999999999999999754332 1222
Q ss_pred hcCccEEEEeccccCCCc---eeeEEe--cCHHH------------------HHHHHH-HHHhhCCCcchhHHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAP---VGSVIV--GSKEF------------------IKKARR-LRKTLGGGMRQVGVLCAAALV 250 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~---~gg~~~--~~~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (359)
..++|+++.|+||+++++ .||+++ .+..+ +.+.+. .....+... ++..++.+..
T Consensus 216 ~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~--~~~~a~l~l~ 293 (430)
T 3ri6_A 216 RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL--SPHNAYLQSL 293 (430)
T ss_dssp GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC--CHHHHHHHHH
T ss_pred HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC--CHHHHHHHHh
Confidence 347899999999999875 567777 33222 222221 223445544 5566666666
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC--------------ccce-EEEEEeccchHHHHHHHHHHHHhc
Q 018243 251 ALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA--------------VETN-IVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
+++.... ++++..+++..+.+.|++.|+++ +..|. ..+. +++|.++. ..++.+|.+.|+..
T Consensus 294 ~l~~l~~-r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~--~~~~~~~~~~l~~~ 370 (430)
T 3ri6_A 294 GLETMAL-RIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES--KEASYRFMDALKLI 370 (430)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--HHHHHHHHHHCSSS
T ss_pred hhhhHHH-HHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--HHHHHHHHHhCCcc
Confidence 6766554 77888899999999999998887 43332 1255 89999974 34777888888665
Q ss_pred CceeccC---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPE---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 315 gi~~~~~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++.+..| .++.||+++. .|+.+++++.|++++
T Consensus 371 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 371 RRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQAL 429 (430)
T ss_dssp EECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred eecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHhh
Confidence 5544322 2456999985 467777888887765
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=229.41 Aligned_cols=330 Identities=18% Similarity=0.142 Sum_probs=223.2
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC--c------cCCChHH---HHHH-HHHHHHhCCCCeEE-cCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD--V------LMHDPTA---FRLE-TEMAKVMGKEAGLF-VPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~---~~l~-~~la~~~~~~~~~~-~~~gt~a~~~~l~ 71 (359)
.|+|.++. ..++|++.+++.+...+.. . |...+.. .++. +.+++++|.+...+ ++||++|+..++.
T Consensus 47 ~i~l~~~~-~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~ 125 (447)
T 3h7f_A 47 TLEMIASE-NFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLH 125 (447)
T ss_dssp SEECCTTC-CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHH
T ss_pred ceeEecCC-CCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHH
Confidence 45664433 3347899999987553211 1 2222333 3333 88999999987755 8999999999999
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCc--cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGV--HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
+++ ++||+|++++++|.+.+..+......|. .++.++.+ +++.+|++++++.+++ .++++|++.+ ++|
T Consensus 126 ~~~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~i~~~~-~~~ 196 (447)
T 3h7f_A 126 ALM-SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE-------FRPKVIIAGW-SAY 196 (447)
T ss_dssp HHC-CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH-------HCCSEEEEEC-SSC
T ss_pred Hhc-CCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh-------cCCeEEEEcC-CCC
Confidence 888 5999999999998774321211223333 33444443 4577999999999963 4677888744 444
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
|++. ++++|+++|++||+++|+|++|..+... .+.....+ ..+|+++.|+||++++|.||++++++++.+.++
T Consensus 197 ~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~-~g~~~~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 197 PRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVA-AGLHPSPV-PHADVVSTTVHKTLGGGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp CSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHH-TTSSCCST-TTCSEEEEESSGGGCCCSCEEEEECGGGHHHHH
T ss_pred CCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhc-CCCCCCCC-CCCcEEEecCCcCCCCCCeEEEEECHHHHHHHh
Confidence 7665 5899999999999999999998655432 22211112 367899999999998888899999998888876
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcC----CCceEecCCccceEEEEEeccch
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
........+....... ++...++ +...++.+++..++++++.+.|++. +|+++...+..++++++.+.. .
T Consensus 270 ~~~~~~~~~~~~~~~~-~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 347 (447)
T 3h7f_A 270 SAVFPGQQGGPLMHVI-AGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRD-S 347 (447)
T ss_dssp HHHTTTTCSSCCHHHH-HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTT-S
T ss_pred hhcCCcccCCccHHHH-HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCC-C
Confidence 5543322222212212 2222222 2233447778888999999999876 588875444567788888764 2
Q ss_pred HHHHHHHHHHHHhcCceec----cC------CCcEEEEEeCCC----CCHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKLEEHGVLVM----PE------SSTRVRIVVHHQ----ISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ~~~~~~~~~~l~~~gi~~~----~~------~~~~lRi~~~~~----~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+...+.+.|.++||.+. ++ .+.++|+++... ++++++++++++|++++++.
T Consensus 348 ~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 348 PLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp SCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred CCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 3456677777888899986 33 346799986432 67999999999999988654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=226.66 Aligned_cols=312 Identities=17% Similarity=0.164 Sum_probs=216.5
Q ss_pred CCCccCCChHHHHHHHHH----HHHhCCC-----------CeEEcCCchHHHHHHHHHhhhh------------------
Q 018243 30 DDDVLMHDPTAFRLETEM----AKVMGKE-----------AGLFVPSGTMGNLISVLVHCET------------------ 76 (359)
Q Consensus 30 ~~~~~~~~~~~~~l~~~l----a~~~~~~-----------~~~~~~~gt~a~~~~l~~~~~~------------------ 76 (359)
+...|..+|...++|+.+ ++++|.+ .+++++|||+|++.++.+++.+
T Consensus 101 ~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~ 180 (475)
T 3k40_A 101 IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180 (475)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 344577788888888775 5667776 3589999999999999987532
Q ss_pred cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
+++.|+++..+|.+..+ + +...|++++.++.+.++ +|+++|++.|++.... ...+.+|++ +..+|++|.+-+
T Consensus 181 ~~~~vi~s~~~H~s~~~-~--~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~--~~~~~~v~~-~~~~t~~G~~~~- 252 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVER-A--GLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAE--GLIPFYAVV-TLGTTNSCAFDY- 252 (475)
T ss_dssp HHEEEEEETTSCHHHHH-H--HHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHT--TCEEEEEEE-EBSCTTTCCBCC-
T ss_pred CCeEEEECCCchHHHHH-H--HHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHC--CCccEEEEE-EecCCCCcCcCC-
Confidence 23579999999999876 3 66789999999988889 9999999999831100 012556666 445568999755
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCcee-eEEec-CHHHHH-HHHHH
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVG-SVIVG-SKEFIK-KARRL 230 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~-~~~~~ 230 (359)
+++|.++|++||+++|+|++|+.+.... ...... ...+|++++++||+++.|.| |+++. +++... .+...
T Consensus 253 --l~~I~~la~~~~~~lhvD~A~~~~~~~~--~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~ 328 (475)
T 3k40_A 253 --LDECGPVGNKHNLWIHVDAAYAGSAFIC--PEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVD 328 (475)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTGGGGGGS--GGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-------
T ss_pred --HHHHHHHHHHhCCeEEEeHHhHHHHHhC--HhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCC
Confidence 8999999999999999999986654421 111111 13579999999999988876 55544 444422 21111
Q ss_pred HHhh----------------CCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEE
Q 018243 231 RKTL----------------GGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVY 293 (359)
Q Consensus 231 ~~~~----------------~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 293 (359)
..+. ..+.+.......+++..+ .+..+++.++..++++++.+.|+++|++++..+ ...++++
T Consensus 329 ~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~-~~~~iv~ 407 (475)
T 3k40_A 329 PLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE-INMGLVC 407 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC-CBTTEEE
T ss_pred ccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEE
Confidence 0110 011111122222333333 234455778889999999999999999998644 4778889
Q ss_pred EEeccchHHHHHHHHHHHHhcCcee-c---cCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLV-M---PESSTRVRIVVH-HQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~-~---~~~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
|.++.. .....++.++|.++|+.. . ..+...+|+++. +.++++++++++++|+++.+++..
T Consensus 408 f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 408 FRLKGS-NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp EEESSC-HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCc-hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 988652 345678999997777654 2 235678999964 456899999999999999988754
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=227.77 Aligned_cols=312 Identities=16% Similarity=0.169 Sum_probs=218.8
Q ss_pred CCCccCCChHHHHHHHHH----HHHhCCCC------------eEEcCCchHHHHHHHHHhhhh-----------------
Q 018243 30 DDDVLMHDPTAFRLETEM----AKVMGKEA------------GLFVPSGTMGNLISVLVHCET----------------- 76 (359)
Q Consensus 30 ~~~~~~~~~~~~~l~~~l----a~~~~~~~------------~~~~~~gt~a~~~~l~~~~~~----------------- 76 (359)
+...|..+|...++|+.+ ++++|.+. +++++|||+|++.++.+++.+
T Consensus 106 ~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~ 185 (481)
T 4e1o_A 106 LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185 (481)
T ss_dssp CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccc
Confidence 345577788888888876 45567653 488999999999999988642
Q ss_pred -cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecC
Q 018243 77 -RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155 (359)
Q Consensus 77 -~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~ 155 (359)
+++.|+++..+|.+..+ + +.+.|.+++.++.++++.+|+++|++.|++.... ...+.+|++ +..+|+||.+-|
T Consensus 186 ~~~~~v~~s~~~H~s~~~-~--~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~--g~~~~~vv~-~~~~t~~G~id~ 259 (481)
T 4e1o_A 186 NARLVAYASDQAHSSVEK-A--GLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQR--GLVPVFVCA-TLGTTGVCAFDC 259 (481)
T ss_dssp HTTEEEEEETTSCHHHHH-H--HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT--TCEEEEEEE-EBSCTTTCCBCC
T ss_pred cCCeEEEEcCcchHHHHH-H--HHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhC--CCCcEEEEE-ecCCCCCcCcCC
Confidence 45688999999999776 3 5678889999998888999999999999831100 012566666 445668998644
Q ss_pred hhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCcee-eEEe-cCHHHHHHHHHH
Q 018243 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVG-SVIV-GSKEFIKKARRL 230 (359)
Q Consensus 156 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~g-g~~~-~~~~~~~~~~~~ 230 (359)
+++|.++|++||+++|+|+||+.+... ....... ...+|++++++||+++.|.| |+++ .++.........
T Consensus 260 ---l~~I~~la~~~~~~lhvDaA~g~~~~~--~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~ 334 (481)
T 4e1o_A 260 ---LSELGPICAREGLWLHIDAAYAGTAFL--CPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSV 334 (481)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTGGGGGG--SGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCC
T ss_pred ---HHHHHHHHHHcCCeEEeehhhHHHHHh--ChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcC
Confidence 999999999999999999997665433 1112111 13569999999999998877 5444 455544321100
Q ss_pred H-HhhC----------------CCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 231 R-KTLG----------------GGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 231 ~-~~~~----------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
. .+.. .+.+.......+++..+ .+..+++.++..++++++.+.|+++|++++.. +...+++
T Consensus 335 ~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~v 413 (481)
T 4e1o_A 335 NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGLV 413 (481)
T ss_dssp CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS-CCCSSEE
T ss_pred CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEE
Confidence 0 0100 01111122233333333 23445578888999999999999999999854 4478888
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcee-cc---CCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLV-MP---ESSTRVRIVVH-HQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~-~~---~~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+|.++.. .....++.++|.++|+.. .+ .+...+|+++. +..+++++++++++|+++.+++.
T Consensus 414 ~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 414 VFRLKGP-NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp EEEESSC-HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCc-hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9988652 345678999998778543 22 35678999964 45589999999999999988764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=232.44 Aligned_cols=326 Identities=15% Similarity=0.071 Sum_probs=222.8
Q ss_pred cccccccCCCC---C---ChHHHHHHHHHc-CCCC--CCccCCChHHHHHHHHHHHHhCC--------CCeEE--cCCch
Q 018243 3 TRTVDLRSDTV---T---KPTEAMRAAMAS-AEVD--DDVLMHDPTAFRLETEMAKVMGK--------EAGLF--VPSGT 63 (359)
Q Consensus 3 ~~~id~~~~~~---~---~~~~~~~~a~~~-~~~~--~~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt 63 (359)
...|||..+.+ . .+.+.+.+++.+ .... ...|+..++..++++.++++++. +..++ +++|+
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~ 108 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGT 108 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchH
Confidence 45789998765 2 345889998887 5432 23466667789999999999832 23456 77788
Q ss_pred HHHHHHH--HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec-C-CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 64 MGNLISV--LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN-N-QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 64 ~a~~~~l--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+|+..++ ...+ .+||+|+++.|+|.+... .++..|.+++.++. + +++.+|+++|++.+++. +..++
T Consensus 109 ~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~~~ 178 (412)
T 1yaa_A 109 GALHISAKFFSKF-FPDKLVYLSKPTWANHMA---IFENQGLKTATYPYWANETKSLDLNGFLNAIQKA------PEGSI 178 (412)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEEESCCTTHHH---HHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS------CTTCE
T ss_pred hHHHHHHHHHHHh-CCCCEEEEeCCCCccHHH---HHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC------CCCCE
Confidence 8888873 4444 489999999999887553 36677889998876 3 36778999999999731 12344
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh---cCchhHhhh-cCc----cEEEEeccccCCC
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA---LGVPVRRLV-QAA----DSASVCLSKGLGA 211 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~---~~~~~~~~~-~~~----d~~~~s~~K~~g~ 211 (359)
+++.+.++||||.+++.+++++|+++|++||+++|+|++|....... ...+...+. ... ++++.|+||.+|.
T Consensus 179 ~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 258 (412)
T 1yaa_A 179 FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGM 258 (412)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCC
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCC
Confidence 55546677799999999999999999999999999999974332211 112232322 133 3455699999985
Q ss_pred ce-e-eEEe--c-----CHH----HHHHHHHHHHhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHH
Q 018243 212 PV-G-SVIV--G-----SKE----FIKKARRLRKTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKL 269 (359)
Q Consensus 212 ~~-g-g~~~--~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~ 269 (359)
++ . ||++ + +++ +.+.+.........+. +...+.++..+++ ...++.++++.+++++
T Consensus 259 ~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (412)
T 1yaa_A 259 YGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNP--PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp GGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSC--CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCC--ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 1 7776 6 565 6666655333222222 3333334444442 2445567778888999
Q ss_pred HHHHHhcCC---CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 270 LAEGLNQLK---GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 270 l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+.+.|+++. ++++.. +..+.++|+.++ ...+...|.++||.+.+ ++||+++ ..+++++++++++|
T Consensus 337 l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~l~~~gi~v~~----~~Ris~~-~~~~~~i~~~~~~l 404 (412)
T 1yaa_A 337 LRDHLVKLGTPGNWDHIV-NQCGMFSFTGLT------PQMVKRLEETHAVYLVA----SGRASIA-GLNQGNVEYVAKAI 404 (412)
T ss_dssp HHHHHHHHTCSSCCTHHH-HCCSSEEECCCC------HHHHHHHHHHHCEECCT----TSEEEGG-GCCTTTHHHHHHHH
T ss_pred HHHHHHhhCCCCCeeeec-cCceEEEeeCCC------HHHHHHHHHhCCEEecc----CcEEEEc-cCCHhHHHHHHHHH
Confidence 999998873 366543 335666665443 23555555789999977 4799997 45899999999999
Q ss_pred HHHHHH
Q 018243 347 QKIYAG 352 (359)
Q Consensus 347 ~~~~~~ 352 (359)
+++++.
T Consensus 405 ~~~~~~ 410 (412)
T 1yaa_A 405 DEVVRF 410 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=232.02 Aligned_cols=324 Identities=14% Similarity=0.085 Sum_probs=221.6
Q ss_pred cccccccCCCC------CChHHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHh-CC----CCeEE--cCCchHHHH
Q 018243 3 TRTVDLRSDTV------TKPTEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVM-GK----EAGLF--VPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~------~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~-~~----~~~~~--~~~gt~a~~ 67 (359)
+..|||..+.+ ..|++.+.+++.+... ....|+...+..++++.+++++ +. +..++ ++||++|+.
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~ 105 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALR 105 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHH
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHH
Confidence 45789999874 1445888888876432 2334666677899999999997 54 23355 788889999
Q ss_pred HHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEec
Q 018243 68 ISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144 (359)
Q Consensus 68 ~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~ 144 (359)
.++..+.. .+|++|+++.|+|.+... .+...|.+++.++.+ +++.+|++++++.+++.. ++++++++ +
T Consensus 106 ~~~~~~~~~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-----~~~~~~~~-~ 176 (394)
T 2ay1_A 106 QALELARMANPDLRVFVSDPTWPNHVS---IMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-----KGDMVLLH-G 176 (394)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCHHHHH---HHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-----TTCEEEEE-S
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCceEEEecccccCCccCHHHHHHHHHhCC-----CCCEEEEe-C
Confidence 88877652 389999999999887554 366678888888764 567789999999998410 23555555 6
Q ss_pred cccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--cCchhHhhhc-CccEE-EEeccccCCCcee--eEEe
Q 018243 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--LGVPVRRLVQ-AADSA-SVCLSKGLGAPVG--SVIV 218 (359)
Q Consensus 145 ~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--~~~~~~~~~~-~~d~~-~~s~~K~~g~~~g--g~~~ 218 (359)
.++||||.+++.+++++|+++|++||+++|+|++|..+.... ...+...+.. ..+++ +.|+||++|.++- |+++
T Consensus 177 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~ 256 (394)
T 2ay1_A 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLL 256 (394)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEE
Confidence 667799999999999999999999999999999976543311 1112222321 33444 5599999985432 7777
Q ss_pred c---CHHHHHHHHH-HH---HhhCCCcchhHHHHHHHHHHHH---------HhHHHHhhhHHHHHHHHHHHHhcCC---C
Q 018243 219 G---SKEFIKKARR-LR---KTLGGGMRQVGVLCAAALVALQ---------ENVLVMLDGDHKKAKLLAEGLNQLK---G 279 (359)
Q Consensus 219 ~---~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~l~~~l~~~~---g 279 (359)
+ ++++++.+.. +. .....+. +...++++...++ ...++..+++.++++++.+.|+++. +
T Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 334 (394)
T 2ay1_A 257 ALCADAATRELAQGAMAFLNRQTYSFP--PFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDR 334 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHHHTTTSSC--CCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhcCCC--ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6 6765544321 21 1111111 2333344444442 3445566777888899999998862 3
Q ss_pred ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+++.. +..+.++|+.++. +.+.+.|.++||.+.++ +|++++ .++++++++++++|+++
T Consensus 335 ~~~~~-~~~g~~~~~~~~~------~~~~~~l~~~gi~v~~~----~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 335 FGFVA-EHRGMFSRLGATP------EQVKRIKEEFGIYMVGD----SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTHHH-HCCSSEEECCCCH------HHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred eeEEc-CCceEEEeeCCCH------HHHHHHHHhCCEEecCC----CeEEee-cCCHhhHHHHHHHHHHc
Confidence 66533 3457788876542 35666778999999774 599987 57999999999999875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=226.62 Aligned_cols=316 Identities=16% Similarity=0.140 Sum_probs=214.7
Q ss_pred CCCccCCChHHHHHHHHH----HHHhCCC----CeEEcCCchHHHHHHHHHhhhh-------------cCCeEEecCCCc
Q 018243 30 DDDVLMHDPTAFRLETEM----AKVMGKE----AGLFVPSGTMGNLISVLVHCET-------------RGSEVILGDNSH 88 (359)
Q Consensus 30 ~~~~~~~~~~~~~l~~~l----a~~~~~~----~~~~~~~gt~a~~~~l~~~~~~-------------~g~~vl~~~~~~ 88 (359)
+...|..++...++|+.+ ++++|.+ ..++++|||+|+..++.++..+ +++.|+++..+|
T Consensus 123 ~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 123 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 344566778877777765 5567876 3488999999999999888742 356899999999
Q ss_pred ceeeccccccccCCc---cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 89 IHIYENGGISTIGGV---HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
.+..+ + +...|. +++.++.+.++.+|+++|++.|++.... +..+++|+++ .++|++|.+- ++++|.++
T Consensus 203 ~s~~~-~--~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~--g~~~~~vv~~-~~~~~~G~vd---~l~~I~~i 273 (511)
T 3vp6_A 203 YSIKK-A--GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQK--GYVPFYVNAT-AGTTVYGAFD---PIQEIADI 273 (511)
T ss_dssp THHHH-H--HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHT--TCEEEEEEEE-BSCSSSCCBC---CHHHHHHH
T ss_pred HHHHH-H--HHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhc--CCCcEEEEEe-cCCCCCcccc---cHHHHHHH
Confidence 99776 3 666676 7888888888999999999999831000 0127788874 4556999974 49999999
Q ss_pred HHHcCcEEEEecccccchhhhcCch-hHhhhcCccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHH-HhhC------
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVP-VRRLVQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLR-KTLG------ 235 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~-~~~~------ 235 (359)
|++||+++|+|++|+.+........ ...-...+|++++++||++++|.| |+++. +++..+...... .+..
T Consensus 274 a~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~ 353 (511)
T 3vp6_A 274 CEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHY 353 (511)
T ss_dssp HHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSS
T ss_pred HHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccc
Confidence 9999999999999877655321111 111123679999999999988866 55544 555555432111 1110
Q ss_pred ------------CCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-CccceEEEEEeccch-
Q 018243 236 ------------GGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVETNIVYFEITEDS- 300 (359)
Q Consensus 236 ------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~- 300 (359)
.+.+.......+++..+ ....+++.++..++++++++.|++.|++++..+ +...+++++.+....
T Consensus 354 ~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~ 433 (511)
T 3vp6_A 354 DVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 433 (511)
T ss_dssp CGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred ccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc
Confidence 00001122223333333 344555888899999999999999999998652 335566666653210
Q ss_pred -------------HHHHHHHHHHHHhcCceecc-----CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 -------------KLYAACLLKKLEEHGVLVMP-----ESSTRVRIVV-HHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 -------------~~~~~~~~~~l~~~gi~~~~-----~~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.....++.+.|.++|+.+.. ++..++|+++ ++..+++|++.+++.|+++-+.+.
T Consensus 434 ~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 434 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 01244788999888875532 2234799998 788999999999999998877654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=230.79 Aligned_cols=335 Identities=13% Similarity=0.058 Sum_probs=230.2
Q ss_pred ccccccCC---CC-CChHHHHHHHHHcCCCC--CC--ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSD---TV-TKPTEAMRAAMASAEVD--DD--VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~---~~-~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
++|||.++ ++ ...+|++.+++.+.... .. .....+...++++.++++++. +..++++||++|+..++..+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a 155 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMA 155 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHH
Confidence 68999986 23 33458888888764432 11 122467788999999999954 45689999999999999988
Q ss_pred hhh------cC-CeEEecCCCcceeeccccccccC-------------CccceeeecCC--CCCCCHHHHHHHhcCCCCC
Q 018243 74 CET------RG-SEVILGDNSHIHIYENGGISTIG-------------GVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGE 131 (359)
Q Consensus 74 ~~~------~g-~~vl~~~~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~ 131 (359)
+.. ++ ++|++.+++|..... + ..... ...+..++.+. ....|+++|++.++++.
T Consensus 156 ~~~~~~~g~~g~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~-- 231 (457)
T 3tfu_A 156 LQYWRGRGLPGKRRLMTWRGGYHGDTF-L-AMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA-- 231 (457)
T ss_dssp HHHHHHTTCTTCCEEEEETTCCCCSSH-H-HHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG--
T ss_pred HHHHHhcCCCCCceEEEEcCCcCCccH-H-hhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC--
Confidence 742 44 478877777654332 1 11111 11222332221 12237889999887421
Q ss_pred ccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~ 208 (359)
+++++|++++..+|++|... +.+++++|+++|++||+++|+||+|... ...+. ....+....|++ +++|.
T Consensus 232 ---~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~--gr~G~~~a~~~~~~~pdii--t~sK~ 304 (457)
T 3tfu_A 232 ---GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGF--GRTGALFAADHAGVSPDIM--CVGKA 304 (457)
T ss_dssp ---GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTT--TTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred ---CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCC--ccccchhHhHhcCCCceEE--EEChh
Confidence 46888988763666888765 6788999999999999999999997532 22222 222232356665 77798
Q ss_pred CCCce--eeEEecCHHHHHHHHHHH-H--hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CC
Q 018243 209 LGAPV--GSVIVGSKEFIKKARRLR-K--TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KG 279 (359)
Q Consensus 209 ~g~~~--gg~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g 279 (359)
++++. .|++++++++++.+.... . ..+.++..+++.++++..+++...+ ...++..++.+++++.|+++ |+
T Consensus 305 l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 384 (457)
T 3tfu_A 305 LTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPA 384 (457)
T ss_dssp GGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTT
T ss_pred hhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 86642 377888999988864211 1 3445566677888888888764432 35667777888888888765 44
Q ss_pred ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 280 LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+... +..+.++++.+..+ .+..++.+.|.++||.+.+.+ .++|++++...+++++++++++|+++++++.
T Consensus 385 v~~v--r~~G~~~~i~l~~~--~~~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 385 VTDV--RVCGAIGVIECDRP--VDLAVATPAALDRGVWLRPFR-NLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp EEEE--EECSSCEEEEESSC--CCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred eeee--ecCCeEEEEEECCc--ccHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4432 34677888888753 357789999999999998865 6899998888999999999999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=227.60 Aligned_cols=319 Identities=17% Similarity=0.154 Sum_probs=211.9
Q ss_pred hHHHHHHHHHcCCCCCC--------ccCCCh----HHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 16 PTEAMRAAMASAEVDDD--------VLMHDP----TAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~~--------~~~~~~----~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
++|.+.+++.+...... .|.... ....+++.+++++|.+.. +++++|++|+..++.+++ ++||+|+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~-~~gd~v~ 120 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-QPGDTVL 120 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-CTTCEEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc-CCCCEEE
Confidence 57899999987652211 121111 123445788899998766 568999999999998887 5999999
Q ss_pred ecCCCcceeeccccccccCCcc--ceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVH--PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
++.++|.+....+......|.. .+.++.+.++.+|+++|++.+++ .++++|++++ ++||+ ..+ ++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~-~~~~~--~~~---l~ 187 (420)
T 3gbx_A 121 GMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE-------HKPKMIIGGF-SAYSG--VVD---WA 187 (420)
T ss_dssp EEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH-------HCCSEEEECC-TTCCS--CCC---HH
T ss_pred ecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh-------cCCeEEEEec-CccCC--ccC---HH
Confidence 9999987744212122333433 34455667788999999999983 3588998855 44453 444 89
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH---HHHHHHHHHHHhhCCC
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK---EFIKKARRLRKTLGGG 237 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~---~~~~~~~~~~~~~~~~ 237 (359)
+|.++|++||+++|+|++|..+... .+.....+ ...|+++.|+||++++|.||++++++ ++.+.++........+
T Consensus 188 ~l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~~-~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (420)
T 3gbx_A 188 KMREIADSIGAYLFVDMAHVAGLIA-AGVYPNPV-PHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQG 265 (420)
T ss_dssp HHHHHHHHTTCEEEEECTTTHHHHH-TTSSCCST-TTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----C
T ss_pred HHHHHHHHcCCEEEEECCcchhcee-cccCCccc-ccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCC
Confidence 9999999999999999998655442 12111112 24789999999999767789888886 7777765433222111
Q ss_pred cchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 238 MRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
...... .++...++ +...++.+++..++++++.+.|++. |+++..++..++++|+.+.. .+.+...+.+.|.+
T Consensus 266 ~~~~~~-~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 342 (420)
T 3gbx_A 266 GPLMHV-IAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVD-KNLTGKEADAALGR 342 (420)
T ss_dssp CCCHHH-HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHH
T ss_pred CcchhH-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCC-CCCCHHHHHHHHHH
Confidence 211222 22222222 2344446778888999999999986 88875444578888888765 23467788888999
Q ss_pred cCceecc-------C---CCcEEEEEeCCC----CCHHHHHHHHHHHHHHHHHH
Q 018243 314 HGVLVMP-------E---SSTRVRIVVHHQ----ISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 314 ~gi~~~~-------~---~~~~lRi~~~~~----~~~~~i~~~~~~l~~~~~~~ 353 (359)
+||.+.+ + +...+|++++.. .+++++++++++|++++++.
T Consensus 343 ~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 343 ANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp TTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 9999876 2 334699987533 56899999999999988654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=230.81 Aligned_cols=317 Identities=16% Similarity=0.127 Sum_probs=220.0
Q ss_pred HHHHHHHHcCCC-CCCccCCChHHH----HHHHHHHHHhCCC----Ce--EEcCCchHHHHHHHHHhhhhcC--------
Q 018243 18 EAMRAAMASAEV-DDDVLMHDPTAF----RLETEMAKVMGKE----AG--LFVPSGTMGNLISVLVHCETRG-------- 78 (359)
Q Consensus 18 ~~~~~a~~~~~~-~~~~~~~~~~~~----~l~~~la~~~~~~----~~--~~~~~gt~a~~~~l~~~~~~~g-------- 78 (359)
+.+.+++.+... +...+...+... ++++.+++++|.+ .. ++++||++|+..++.+++. ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~-~g~~~~g~~~ 192 (514)
T 3mad_A 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRD-WARATKGITA 192 (514)
T ss_dssp HHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHH-HHHHHHCCSS
T ss_pred HHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHH-HhhhhcCCCC
Confidence 455555543221 222334445544 4455568888987 34 8899999999999999874 54
Q ss_pred CeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 79 ~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
++|+++.++|.+... .+...|++++.++.+.++.+|+++|++.++ +++++|+++++ +||||.+.+
T Consensus 193 d~Vi~~~~~~~~~~~---~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~--- 257 (514)
T 3mad_A 193 PEAVVPVSAHAAFDK---AAQYFGIKLVRTPLDADYRADVAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP--- 257 (514)
T ss_dssp CEEEEETTSCTHHHH---HHHHHTCEEEEECBCTTSCBCHHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC---
T ss_pred CeEEEeCccchHHHH---HHHHcCCeeEEeeeCCCCCCCHHHHHHHhc--------cCCEEEEEeCC-CCCCccccC---
Confidence 899999999988654 367779999999988889999999999998 68899998655 569999977
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhh---hcCc---hhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHH-
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAV---ALGV---PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRL- 230 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~---~~~~---~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~- 230 (359)
+++|.++|++||+++|+|++|+.+... ..+. .......++|++++|+||+++++.+ |+++.+++........
T Consensus 258 l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~ 337 (514)
T 3mad_A 258 IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFI 337 (514)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEE
T ss_pred HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhcccccc
Confidence 899999999999999999998654432 1121 1111224678999999999766655 7666654443321100
Q ss_pred HH-hh---------CCCcchh-HHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEecc
Q 018243 231 RK-TL---------GGGMRQV-GVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE 298 (359)
Q Consensus 231 ~~-~~---------~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 298 (359)
.. .. .++.... ...+.+++..+ ....++..++..++++++.+.|++++++++..++ ..++++....
T Consensus 338 ~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~ 415 (514)
T 3mad_A 338 AADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASDE 415 (514)
T ss_dssp ESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECSS
T ss_pred ccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCCC
Confidence 00 00 1111111 12223333333 2334457778889999999999999899875433 4467776643
Q ss_pred chHHHHHHHHHHHHhcCceeccC-CCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 299 DSKLYAACLLKKLEEHGVLVMPE-SSTRVRIVVH-HQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 299 ~~~~~~~~~~~~l~~~gi~~~~~-~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+..++.+.|.++||.+... .+..+|+++. ...+++++++++++|+++++++.+
T Consensus 416 ---~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 416 ---LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp ---SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36788999999999987322 2567999986 445679999999999999988764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=217.66 Aligned_cols=282 Identities=20% Similarity=0.138 Sum_probs=210.8
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDG 114 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 114 (359)
..+...++++.+++++|.+..++++||++|+..++..++ ++|++|+++.+.|.+.+... ......|.+++.++.+
T Consensus 64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 139 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA--- 139 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC---
Confidence 367789999999999999988999999999999999887 59999999999998765411 1236678888888765
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++. ||||.+.+ +++|.++|++||+++|+|++|+.+.. . .++
T Consensus 140 --d~~~l~~~i~--------~~~~~v~~~~~~-nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~---~---~~~ 199 (392)
T 3qhx_A 140 --DLDAVRAAIR--------PTTRLIWVETPT-NPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL---Q---QPL 199 (392)
T ss_dssp --CHHHHHHHCC--------TTEEEEEEESSC-TTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT---C---CGG
T ss_pred --CHHHHHHhhC--------CCCeEEEEECCC-CCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc---C---ChH
Confidence 9999999998 789999996655 59999877 89999999999999999999754321 1 122
Q ss_pred hcCccEEEEeccccCCCce---eeEEecC-HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVGS-KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..++|+++.|+||++|++. +|+++.+ +++.+.++......+... ++..++++...++.... +.++..++++++
T Consensus 200 ~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~--~~~~~~~~~~~l~~l~~-~~~~~~~~~~~l 276 (392)
T 3qhx_A 200 SLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVP--GPFDAYLTMRGLKTLVL-RMQRHSENAAAV 276 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHH
T ss_pred HhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCC--CHHHHHHHHhhhhHHHH-HHHHHHHHHHHH
Confidence 3378999999999998753 5777776 788888887776666555 44555566666665444 677788889999
Q ss_pred HHHHhcCCCceE-ecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-------------
Q 018243 271 AEGLNQLKGLRV-DVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------- 321 (359)
Q Consensus 271 ~~~l~~~~g~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------- 321 (359)
.+.|++.|.+.. ..+ ...+.++++.++.. ....+.+.+.|...|+.+..+
T Consensus 277 ~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~ 355 (392)
T 3qhx_A 277 AEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMT 355 (392)
T ss_dssp HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTS
T ss_pred HHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-HHHHHHHHHhCCCceECCCCCCCCceeeCccccc
Confidence 999999877643 222 11366888998762 346778888887777655322
Q ss_pred -----------CCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 322 -----------SSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 322 -----------~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
.+..||++++...+++.++.+.++
T Consensus 356 ~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~a 390 (392)
T 3qhx_A 356 HASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQA 390 (392)
T ss_dssp CGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred ccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 245699999754444444444443
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=221.28 Aligned_cols=295 Identities=17% Similarity=0.140 Sum_probs=216.0
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh-hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH-CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~-~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 115 (359)
++...++++.++++++.+..++++||++|+..++.++ . ++|++|+++.++|.+... .+...|++++.++.++++.
T Consensus 31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~-~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~ 106 (394)
T 1o69_A 31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGV-KQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYN 106 (394)
T ss_dssp THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSS
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCC-CCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCC
Confidence 4668999999999999988899999999999999998 6 589999999999988764 3666888999998877888
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
+|+++|++.+++.. .++++|++++ |||... ++++|.++|+++|+++|+|++|++|... .+.....+
T Consensus 107 ~d~~~l~~~i~~~~-----~~~~~v~~~~----~~G~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~- 172 (394)
T 1o69_A 107 IDVDLLKLAIKECE-----KKPKALILTH----LYGNAA---KMDEIVEICKENDIVLIEDAAEALGSFY-KNKALGTF- 172 (394)
T ss_dssp BCHHHHHHHHHHCS-----SCCCEEEEEC----GGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEE-TTEETTSS-
T ss_pred cCHHHHHHHHhccc-----CCceEEEEEC----CCCChh---hHHHHHHHHHHcCCEEEEECcCccccee-CCcccccc-
Confidence 99999999998310 1688998865 678654 5899999999999999999998755432 23222222
Q ss_pred cCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHhhCC------------CcchhHHHHHHHHHHHHHhHHHHhhh
Q 018243 196 QAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKTLGG------------GMRQVGVLCAAALVALQENVLVMLDG 262 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (359)
...|+.++|.+|.++++.+|++++ ++++.+.++........ +...++..++++...++. +++..++
T Consensus 173 ~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~-l~~~~~~ 251 (394)
T 1o69_A 173 GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEV-LEQRVLK 251 (394)
T ss_dssp SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTT-HHHHHHH
T ss_pred cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHH-HHHHHHH
Confidence 246677778899998655688888 58888887765432210 111234555555444443 3447778
Q ss_pred HHHHHHHHHHHHhcCCCceEecCCc--cce--EEEEEeccch-------------------HHHHHHHHHHHHhcCceec
Q 018243 263 DHKKAKLLAEGLNQLKGLRVDVDAV--ETN--IVYFEITEDS-------------------KLYAACLLKKLEEHGVLVM 319 (359)
Q Consensus 263 ~~~~~~~l~~~l~~~~g~~~~~~~~--~~~--~~~~~~~~~~-------------------~~~~~~~~~~l~~~gi~~~ 319 (359)
..++++++.+.|+++ +++..+.. ..+ ++++.++... +.+..++.+.|.++||.+.
T Consensus 252 ~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 329 (394)
T 1o69_A 252 KREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETR 329 (394)
T ss_dssp HHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCccc
Confidence 888999999999886 55432211 123 4667776311 2467889999999999986
Q ss_pred cCCC------------------------cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 320 PESS------------------------TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 320 ~~~~------------------------~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.. ..++++++..++++|+++++++|+++++.
T Consensus 330 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 330 PLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp CCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5510 34677778889999999999999988654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=216.81 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=207.8
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.++++++.+..+++++|++|+..++..+. ++|++|+++.++|.+.+... ..++..|.+++.++.+
T Consensus 51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 125 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG---- 125 (386)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT----
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC----
Confidence 57789999999999999888889999999999999887 58999999999998755410 1135678888888764
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|++++++.++ +++++|++++ ++||||.+.+ +++|.++|++||+++|+|++|..+... .. +.
T Consensus 126 -d~~~l~~~i~--------~~~~~v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~---~~---~~ 186 (386)
T 1cs1_A 126 -DEQALRAALA--------EKPKLVLVES-PSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ---NP---LA 186 (386)
T ss_dssp -CHHHHHHHHH--------TCCSEEEEEC-SCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CG---GG
T ss_pred -CHHHHHHhhc--------cCCcEEEEeC-CCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC---Cc---cc
Confidence 8999999998 6789999966 4559999987 899999999999999999998655432 11 12
Q ss_pred cCccEEEEeccccCCCcee---eEEecCH-HHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPVG---SVIVGSK-EFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~g---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.+.|+++.|+||++++|.+ |+++.++ ++.+.++.....++.+. ++..++++..+++.. ..+.++..++.+.+.
T Consensus 187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~ 263 (386)
T 1cs1_A 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTG--GAFDSYLLLRGLRTL-VPRMELAQRNAQAIV 263 (386)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBC--CHHHHHHHHHHHTTH-HHHHHHHHHHHHHHH
T ss_pred cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHhcccHH-HHHHHHHHHHHHHHH
Confidence 3688999999999987653 8888765 88888876665555433 334444444455433 335667778888888
Q ss_pred HHHhcCCCceEe-cC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceecc---C-----------
Q 018243 272 EGLNQLKGLRVD-VD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP---E----------- 321 (359)
Q Consensus 272 ~~l~~~~g~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~---~----------- 321 (359)
+.|++++.+.-. .+ ...++++.+.++. ..+.+.+.|.++||.+.. +
T Consensus 264 ~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~ 339 (386)
T 1cs1_A 264 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG----DEQTLRRFLGGLSLFTLAESLGGVESLISHAAT 339 (386)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----CHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGG
T ss_pred HHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC----CHHHHHHHHHhCCcceEcccCCCcceeeecccc
Confidence 888887555321 11 1237778888765 255777888889998753 2
Q ss_pred ----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 322 ----------------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 322 ----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+++|++++...++++++.+.++|+++
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 340 MTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp TTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1478999998766666666666666544
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=221.53 Aligned_cols=305 Identities=18% Similarity=0.196 Sum_probs=220.3
Q ss_pred HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh------hhhcCCeEEecCCCccee
Q 018243 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH------CETRGSEVILGDNSHIHI 91 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~------~~~~g~~vl~~~~~~~~~ 91 (359)
+++.+++.+.... ..|...+...++++.+++++|.+..++++||++|+..++.++ ..++|++|+++.++|.+.
T Consensus 15 ~~~~~a~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~ 93 (390)
T 3b8x_A 15 DLEYKAIQSVLDS-KMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTT 93 (390)
T ss_dssp HHHHHHHHHHHHH-TCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHH
T ss_pred HHHHHHHHHHHHc-CCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHH
Confidence 5666666654322 235567889999999999999998899999999999999988 135899999999999887
Q ss_pred eccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC
Q 018243 92 YENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170 (359)
Q Consensus 92 ~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~ 170 (359)
.. . +...|.+++.++.+.+ +.+|+++|++.++ +++++|++++. +|.+. ++++|.++|+++|
T Consensus 94 ~~-~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~~----~g~~~---~~~~i~~l~~~~~ 155 (390)
T 3b8x_A 94 YY-P--LQQYGLRVKFVDIDINTLNIDIESLKEAVT--------DSTKAILTVNL----LGNPN---NFDEINKIIGGRD 155 (390)
T ss_dssp HH-H--HHHTTCEEEEECBCTTTCSBCHHHHHHHCC--------TTEEEEEEECG----GGCCC---CHHHHHHHHTTSC
T ss_pred HH-H--HHHcCCEEEEEecCccccCcCHHHHHHHhC--------cCCeEEEEECC----ccChh---hHHHHHHHHHHcC
Confidence 65 2 6678889999987755 8899999999998 68899998653 34543 5899999999999
Q ss_pred cEEEEecccccchhhhcCchhHhhhcCccEEEEe--ccccCCCceeeEEecCH-HHHHHHHHHHHhh-------------
Q 018243 171 LKLHIDGARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGAPVGSVIVGSK-EFIKKARRLRKTL------------- 234 (359)
Q Consensus 171 ~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s--~~K~~g~~~gg~~~~~~-~~~~~~~~~~~~~------------- 234 (359)
+++|+|++|+.|... .+. .+....|+.++| .+|.++++.||+++.++ ++.+.++......
T Consensus 156 ~~li~D~a~~~g~~~-~~~---~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 231 (390)
T 3b8x_A 156 IILLEDNCESMGATF-NNK---CAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTG 231 (390)
T ss_dssp CEEEEECTTCTTCEE-TTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTE
T ss_pred CEEEEECcCcccCEE-CCc---ccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccccc
Confidence 999999999766543 221 222234555544 35666555668887764 6776665543211
Q ss_pred ----------------CCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceE--EEEEe
Q 018243 235 ----------------GGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI--VYFEI 296 (359)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~--~~~~~ 296 (359)
|.+...++..+++++..++.. ++..++..++++++.+.|+++|++++..++...++ +++.+
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~ 310 (390)
T 3b8x_A 232 VKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL-PRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFII 310 (390)
T ss_dssp ECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEE
T ss_pred cccccccccccceeccccccCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEe
Confidence 122224566666666666544 34777888999999999999888887432223333 44555
Q ss_pred ccchHHHHHHHHHHHHhcCceecc---CC---C-----------------------cEEEEEeCCCCCHHHHHHHHHHH
Q 018243 297 TEDSKLYAACLLKKLEEHGVLVMP---ES---S-----------------------TRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~gi~~~~---~~---~-----------------------~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+...+.+.+++.+.|.++||.+.+ +. . ..+|+++++.++++|++++++.|
T Consensus 311 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 311 KKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred cCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 521123678899999999998854 11 1 25999999999999999999876
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-29 Score=224.09 Aligned_cols=325 Identities=14% Similarity=0.075 Sum_probs=225.2
Q ss_pred ChHHHHHHHHHcCCCC-CCccCCChHHHHH----HHHHHHHhCCCC-------eEEcCCchHHHHHHHHHhhh-------
Q 018243 15 KPTEAMRAAMASAEVD-DDVLMHDPTAFRL----ETEMAKVMGKEA-------GLFVPSGTMGNLISVLVHCE------- 75 (359)
Q Consensus 15 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l----~~~la~~~~~~~-------~~~~~~gt~a~~~~l~~~~~------- 75 (359)
.++|.+.+++.++... ...|..++...++ ++.+++++|.+. +++++|||+|+..++.+++.
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888876532 2234556665544 455688888863 58899999999999988763
Q ss_pred hcC-----CeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 76 TRG-----SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 76 ~~g-----~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
.+| ++|++++ +|.+..+ .+...|++++.++.++ ++.+|+++|++.++ +++++|++ +.++||
T Consensus 133 ~~G~~~~~~~vi~~~-~h~~~~~---~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--------~~t~~v~~-~~~~n~ 199 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP-VQICWHK---FARYWDVELREIPMRPGQLFMDPKRMIEACD--------ENTIGVVP-TFGVTY 199 (452)
T ss_dssp HTTCCCSCCEEEESS-CCHHHHH---HHHHTTCEEEECCCBTTBCSCCHHHHHHHCC--------TTEEEEEC-BBSCTT
T ss_pred hcCCCCCCcEEEECC-CcHHHHH---HHHHcCceEEEEecCCCCCeECHHHHHHHHh--------hCCEEEEE-EcCCcC
Confidence 144 5899999 8877654 3677899999998766 78999999999998 67888888 455569
Q ss_pred CceecChhhHHHHHHHHHHc------CcEEEEecccccchhhhcCchh-Hhh-hcCccEEEEeccccCCCcee-eEEecC
Q 018243 150 GGRCLSVEYTDSVGEIAKKH------GLKLHIDGARIFNAAVALGVPV-RRL-VQAADSASVCLSKGLGAPVG-SVIVGS 220 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~~~-~~~-~~~~d~~~~s~~K~~g~~~g-g~~~~~ 220 (359)
||.+.+ +++|.++|+++ |+++|+|++|+.+...+..... ..+ ..++|++++++||++++|.+ |+++.+
T Consensus 200 tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~ 276 (452)
T 2dgk_A 200 TGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWR 276 (452)
T ss_dssp TCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEES
T ss_pred CcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEc
Confidence 999866 89999999996 9999999997655432111110 111 23788999999998866666 777774
Q ss_pred -HHHH-HHHHHHHHhhCC---------Ccch-hHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-
Q 018243 221 -KEFI-KKARRLRKTLGG---------GMRQ-VGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA- 286 (359)
Q Consensus 221 -~~~~-~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~- 286 (359)
++.. +.+.....+.+. +.+. ......+++..+ .+..++..++..++++++.+.|++++++++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 356 (452)
T 2dgk_A 277 DEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGR 356 (452)
T ss_dssp SGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCC
Confidence 4332 332111111111 1111 122222333333 2334457778889999999999999889886432
Q ss_pred --ccceEEEEEeccch--HHHHHHHHHHHHhcCceec----cC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 287 --VETNIVYFEITEDS--KLYAACLLKKLEEHGVLVM----PE---SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 287 --~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~----~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
...+++.+.++... ..+..++.+.|.++||.+. +. +..++|+++...+++++++++++.|+++++++.+
T Consensus 357 ~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 357 PDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp TTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36678888876410 1245789999999999642 22 3458999998888999999999999999887754
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=232.32 Aligned_cols=336 Identities=12% Similarity=0.094 Sum_probs=221.3
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh-------CC----CCeE-EcCCchHHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM-------GK----EAGL-FVPSGTMGNLISVLV 72 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~-------~~----~~~~-~~~~gt~a~~~~l~~ 72 (359)
.|||..+.+..|.+.+.+++.+.... ..|+..++...+++.+++.+ +. +..+ +++|+++++..++..
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~ 184 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFES 184 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence 67888888888777787777765422 45666666667777766544 12 1234 455555666666666
Q ss_pred h----hhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 73 H----CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 73 ~----~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
+ +.++||.|++++|+|..... .......|++++.++.+. ++.+|+++|++.++ +++++|++++ +
T Consensus 185 l~~~~l~~~Gd~Vlv~~P~y~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~k~v~l~~-p 254 (546)
T 2zy4_A 185 LKLNGLLKAGDKVAIGMPVFTPYIE-IPELAQYALEEVAINADPSLNWQYPDSELDKLKD--------PAIKIFFCVN-P 254 (546)
T ss_dssp HHHTTSSCTTCEEEEEESCCHHHHH-HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS--------TTEEEEEEES-S
T ss_pred hhhhhcCCCCCEEEEeCCCCccHHH-HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC--------CCCeEEEEEC-C
Confidence 3 23589999999999877554 211223467788886543 35689999988776 7899999975 5
Q ss_pred cCCCceecChhhHHHHHHHH--HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIA--KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKE 222 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~--~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~ 222 (359)
+||||.+++.+++++|+++| +++|++||+||+|..... ...+......+..+++.|+||.+|.++. ||++++++
T Consensus 255 ~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~--~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 255 SNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD--DFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQ 332 (546)
T ss_dssp CSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGST--TCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcc--cCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCH
Confidence 77999999999999999999 789999999999754332 2333333322334556699999986542 88887664
Q ss_pred -HHHHHHH-------------HHH-----------------------hhCCCcchhHHHHHH--HHHH-H---HHhHHHH
Q 018243 223 -FIKKARR-------------LRK-----------------------TLGGGMRQVGVLCAA--ALVA-L---QENVLVM 259 (359)
Q Consensus 223 -~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~~--~~~~-l---~~~~~~~ 259 (359)
+++.+.. +.. ..+.+.+...+.+.+ +..+ + +.+.+..
T Consensus 333 ~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~ 412 (546)
T 2zy4_A 333 NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTL 412 (546)
T ss_dssp CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7666521 110 111122222222211 1122 2 2344546
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEecc------ch--------HH-HHHHHHHHHHhcCceeccCC--
Q 018243 260 LDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE------DS--------KL-YAACLLKKLEEHGVLVMPES-- 322 (359)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~------~~--------~~-~~~~~~~~l~~~gi~~~~~~-- 322 (359)
++.+.++++.+.+.|. . ++.. .++..+.++|+.++. .. +. +.+.+.+.|.++||.+.|+.
T Consensus 413 r~~~~~r~~~l~~~L~-~-~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F 489 (546)
T 2zy4_A 413 KQLIRRRETTLYRELG-M-PPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGF 489 (546)
T ss_dssp HHHHHHHHHHHHGGGT-S-SCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCT
T ss_pred HHHHHHHHHHHHHhcC-C-Cccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCcccc
Confidence 6667778888888885 4 4443 234567778998752 00 01 23446666789999998864
Q ss_pred ---CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 323 ---STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 323 ---~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
.+++||++. ..+++++++++++|+++++++.++.
T Consensus 490 ~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~~~ 526 (546)
T 2zy4_A 490 GSNRPSGRASLA-NLNEYEYAAIGRALRKMADELYAEY 526 (546)
T ss_dssp TCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999996 5689999999999999998877543
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=224.16 Aligned_cols=320 Identities=15% Similarity=0.139 Sum_probs=217.6
Q ss_pred HHHHHHHHcCC-CCCCccCCChHHHHHHHHH----HHHhCCCC-----------eEEcCCchHHHHHHHHHhhhh--c--
Q 018243 18 EAMRAAMASAE-VDDDVLMHDPTAFRLETEM----AKVMGKEA-----------GLFVPSGTMGNLISVLVHCET--R-- 77 (359)
Q Consensus 18 ~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~l----a~~~~~~~-----------~~~~~~gt~a~~~~l~~~~~~--~-- 77 (359)
..+.+.+.... .+...|..++...++|+.+ ++++|.+. +++++|||+|+..++.++... +
T Consensus 88 ~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~ 167 (486)
T 1js3_A 88 AMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL 167 (486)
T ss_dssp HHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhh
Confidence 44555555542 2334466667776666554 66678763 489999999999999887531 1
Q ss_pred ----CC--------e--EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCce------
Q 018243 78 ----GS--------E--VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT------ 137 (359)
Q Consensus 78 ----g~--------~--vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------ 137 (359)
|+ + |+++.++|++..+ + +...|++++.++.+.++.+|+++|++.++ +++
T Consensus 168 ~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~-~--~~~~G~~v~~v~~d~~~~~d~~~L~~~i~--------~~~~~g~~p 236 (486)
T 1js3_A 168 QAASPGLTQGAVLEKLVAYASDQAHSSVER-A--GLIGGVKLKAIPSDGKFAMRASALQEALE--------RDKAAGLIP 236 (486)
T ss_dssp HHHSTTCCHHHHHHHEEEEEETTCCHHHHH-H--HHHHTCEEEEECCCTTSCCCHHHHHHHHH--------HHHHTTCEE
T ss_pred hccCccchhcccCCCEEEEECCCCcHHHHH-H--HHhCCCceEEeecCCCCCCCHHHHHHHHH--------HHHhCCCCc
Confidence 32 3 7789999998665 3 67779999999888889999999999998 333
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-ch-hHhhhcCccEEEEeccccCCCcee-
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VP-VRRLVQAADSASVCLSKGLGAPVG- 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~-~~~~~~~~d~~~~s~~K~~g~~~g- 214 (359)
.+|++ +.++||||.+- ++++|.++|++||+++|+|++|+.+...... .. ...+ .++|++++++||++++|.+
T Consensus 237 ~~vv~-~~~~n~tG~~~---~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~-~~adsi~~~~hK~~~~p~~~ 311 (486)
T 1js3_A 237 FFVVA-TLGTTSCCSFD---NLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV-EFADSFNFNPHKWLLVNFDC 311 (486)
T ss_dssp EEEEE-EBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG-GGCSEEEECHHHHSSCCSSC
T ss_pred eEEEE-eCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc-cccCeeEEchhhhcCCCcce
Confidence 36666 45567999864 5999999999999999999998665443211 11 1112 3689999999999988766
Q ss_pred eEEec-CHHH-HHHHHHHHHhhC------------------CCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHH
Q 018243 215 SVIVG-SKEF-IKKARRLRKTLG------------------GGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEG 273 (359)
Q Consensus 215 g~~~~-~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~ 273 (359)
|+++. ++.. .+.+.....+.. .+.+.......+++..+ ....++..++..++++++.+.
T Consensus 312 G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~ 391 (486)
T 1js3_A 312 SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAF 391 (486)
T ss_dssp EEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 76666 4443 333211111100 01111222233333333 234455777888999999999
Q ss_pred HhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceecc----CCCcEEEEEe-CCCCCHHHHHHHHHHHHH
Q 018243 274 LNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP----ESSTRVRIVV-HHQISANDVHYTLSCFQK 348 (359)
Q Consensus 274 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~----~~~~~lRi~~-~~~~~~~~i~~~~~~l~~ 348 (359)
|++.|++++..+ ...+++.+.+..... ...++.+.|.++|+.+.. .+..++|+++ ++..+++++++++++|++
T Consensus 392 L~~~~~~~~~~~-~~~~~v~f~~~~~~~-~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 392 VLQDPRFEVCAE-VTLGLVCFRLKGSDG-LNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp HHHCTTEEECSC-CCSSEEEEEESSCHH-HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCeEEeCC-CceeEEEEEecChHH-HHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999998543 356777777764211 347899999878865422 2456899996 556789999999999999
Q ss_pred HHHHHHh
Q 018243 349 IYAGVCE 355 (359)
Q Consensus 349 ~~~~~~~ 355 (359)
+++++.+
T Consensus 470 ~~~~~~~ 476 (486)
T 1js3_A 470 LAAELLA 476 (486)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9887754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-28 Score=215.05 Aligned_cols=303 Identities=18% Similarity=0.173 Sum_probs=215.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 11 DTVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 11 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
.++..++++...+..........|+. .+...++++.+++++|.+.+++++||++|+..++..++ ++|++|+++.++|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y 108 (389)
T 3acz_A 30 STFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLY 108 (389)
T ss_dssp SBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCC
T ss_pred CceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCc
Confidence 34555554333333322223334443 67889999999999999988999999999999988887 5999999999999
Q ss_pred ceeeccccc---cccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHH
Q 018243 89 IHIYENGGI---STIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEI 165 (359)
Q Consensus 89 ~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~ 165 (359)
.+.+. .. ++..|.+++.++.. |++++++.++ +++++|+++++. ||||.+.+ +++|.++
T Consensus 109 ~~~~~--~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~--------~~~~~v~~~~~~-nptG~~~~---l~~i~~~ 169 (389)
T 3acz_A 109 GCTVS--LFTHWLPRFGIEVDLIDTS-----DVEKVKAAWK--------PNTKMVYLESPA-NPTCKVSD---IKGIAVV 169 (389)
T ss_dssp HHHHH--HHHHHHHHTTCEEEEECTT-----CHHHHHHTCC--------TTEEEEEEESSC-TTTCCCCC---HHHHHHH
T ss_pred hHHHH--HHHHHHHHcCCEEEEECCC-----CHHHHHHhcC--------CCCeEEEEECCC-CCCCeecC---HHHHHHH
Confidence 87664 22 46678888888764 8999999998 689999996655 59999987 8999999
Q ss_pred HHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecCH-HHHHHHHHHHHhhCCCcchh
Q 018243 166 AKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGSK-EFIKKARRLRKTLGGGMRQV 241 (359)
Q Consensus 166 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~~-~~~~~~~~~~~~~~~~~~~~ 241 (359)
|+++|+++|+|++|..+.. +.+ +..++|+++.|+||+++++. +|+++.++ ++++.++.....++.+. +
T Consensus 170 ~~~~~~~livD~~~~~~~~---~~~---~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~--~ 241 (389)
T 3acz_A 170 CHERGARLVVDATFTSPCF---LKP---LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLM--A 241 (389)
T ss_dssp HHHHTCEEEEECTTTCTTT---CCG---GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCC--C
T ss_pred HHHcCCEEEEECCCccccc---cCc---cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCC--C
Confidence 9999999999999755432 112 22378999999999998764 58888887 88888877666566554 4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceE-ecC---------------CccceEEEEEeccchHHHHH
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV-DVD---------------AVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~ 305 (359)
+..++++..+++.... +.++..+++..+.+.|++.+.+.- ..+ +..++++.+.++. .+
T Consensus 242 ~~~~~~~~~~l~~l~~-r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~ 315 (389)
T 3acz_A 242 PMDAFLCARGMKTLPI-RMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----FE 315 (389)
T ss_dssp HHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----HH
T ss_pred HHHHHHHHcCccHHHH-HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----HH
Confidence 4555555666654333 566777788888888887644321 111 1236677788753 33
Q ss_pred HHHHHHHhcCceecc---C---------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVMP---E---------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 306 ~~~~~l~~~gi~~~~---~---------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.+.|.+.|+.+.. + ..+.+|++++.. +.+++++.|.++++
T Consensus 316 ~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 316 AAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp HHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 555666777876633 1 146899999643 66666666666654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=224.21 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=219.0
Q ss_pred cccccccCCCCCChHHHHHHHHHcCC--CCCCccCCChHHHHHHHH----HHHHhCCC---CeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAE--VDDDVLMHDPTAFRLETE----MAKVMGKE---AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~l~~~----la~~~~~~---~~~~~~~gt~a~~~~l~~~ 73 (359)
+.++|+.... ...+.+.+++.... .+...|+.++...++|+. +++++|.+ ..++++|||+|+..++..+
T Consensus 101 ~~yl~~~~~~--~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~a 178 (497)
T 2qma_A 101 PDCIAHLHTP--PLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLA 178 (497)
T ss_dssp TTBCSSSCCC--CBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHH
T ss_pred CCeeEeCCCC--CcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHH
Confidence 3444444443 22355555543321 133446666666666655 88889884 3588999999999999885
Q ss_pred h---h---------hc------CC-eEEecCCCcceeeccccccccCCc---cceeeecCCCCCCCHHHHHHHhcCCCCC
Q 018243 74 C---E---------TR------GS-EVILGDNSHIHIYENGGISTIGGV---HPRTVKNNQDGTMDIDLIEAAIRDPKGE 131 (359)
Q Consensus 74 ~---~---------~~------g~-~vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~ 131 (359)
. . .+ ++ .|+++.++|++..+ + +...|. +++.++.++++.+|+++|++.+++....
T Consensus 179 r~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~-~--~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~ 255 (497)
T 2qma_A 179 RDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQK-S--ASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAE 255 (497)
T ss_dssp HHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHH-H--HHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHT
T ss_pred HHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHH-H--HHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHC
Confidence 2 1 12 35 79999999998776 2 455544 7888888888999999999999731000
Q ss_pred ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch-hHhhhcCccEEEEeccccCC
Q 018243 132 IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-VRRLVQAADSASVCLSKGLG 210 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~~g 210 (359)
..++.+|++ +..+|+||.+.+ +++|.++|++||+++|+|++|+.+........ ...+ ..+|++++|+||+++
T Consensus 256 --~~~~~~vv~-~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi-~~~D~i~~s~hK~l~ 328 (497)
T 2qma_A 256 --GLIPFAIVG-TAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGV-ERAHSISVDFHKLFY 328 (497)
T ss_dssp --TCEEEEEEE-EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTG-GGCSEEEEETTTTTC
T ss_pred --CCcceEEEE-cCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCc-ccCCEEEEcchhccC
Confidence 011336666 455669999655 89999999999999999999866554322111 1112 377999999999998
Q ss_pred Ccee-eEEec-CHHHHHHHHHHHHhhCC------Cc---------chhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHH
Q 018243 211 APVG-SVIVG-SKEFIKKARRLRKTLGG------GM---------RQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 211 ~~~g-g~~~~-~~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~ 272 (359)
+|.+ |+++. ++...+.+.....+... .. +...+...+++..+ ....++..++..++++++.+
T Consensus 329 ~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~ 408 (497)
T 2qma_A 329 QTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVAD 408 (497)
T ss_dssp CCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 8866 66555 45433332111111000 00 00011112222222 23344577788899999999
Q ss_pred HHhcCCCceEecCCccceEEEEEeccch---HHHHHHHHHHHHhcCceecc----CCCcEEEEEe-CCCCCHHHHHHHHH
Q 018243 273 GLNQLKGLRVDVDAVETNIVYFEITEDS---KLYAACLLKKLEEHGVLVMP----ESSTRVRIVV-HHQISANDVHYTLS 344 (359)
Q Consensus 273 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~~~~----~~~~~lRi~~-~~~~~~~~i~~~~~ 344 (359)
.|+++|++++..+ ...+++++.+.... .....++.+.|.++|+.+.+ .+..++|+++ ++.+++++++++++
T Consensus 409 ~L~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~ 487 (497)
T 2qma_A 409 MIRTNDQFELLAE-PSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLS 487 (497)
T ss_dssp HHHTCTTEEECSC-CSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHhhCCCeEEEcC-CCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHH
Confidence 9999889988544 35678888876421 01234677888888998754 3456899997 88899999999999
Q ss_pred HHHHHHHHH
Q 018243 345 CFQKIYAGV 353 (359)
Q Consensus 345 ~l~~~~~~~ 353 (359)
.|+++++++
T Consensus 488 ~l~~~~~~~ 496 (497)
T 2qma_A 488 KINMLAVEL 496 (497)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=224.79 Aligned_cols=321 Identities=15% Similarity=0.107 Sum_probs=219.3
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC---C----cc--CCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD---D----VL--MHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~---~----~~--~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
..++|+.+....+++.+.+++.+..... . .+ +..+...++++.+++++|.+ ..++++||++++..++..
T Consensus 28 ~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~ 107 (416)
T 1qz9_A 28 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSA 107 (416)
T ss_dssp TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHH
T ss_pred CeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHh
Confidence 3456666555555566777766543221 1 11 12356689999999999986 346677777788777777
Q ss_pred hh-h----hcCCe-EEecCCCcceeeccc-cccccC--CccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 73 HC-E----TRGSE-VILGDNSHIHIYENG-GISTIG--GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 73 ~~-~----~~g~~-vl~~~~~~~~~~~~~-~~~~~~--g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
++ . ++|++ |+++.++|.+..... ...... |++++.++. +++|++.++ +++++|+++
T Consensus 108 ~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~--------~~~~~v~~~ 172 (416)
T 1qz9_A 108 ALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID--------QDTAVVMLT 172 (416)
T ss_dssp HHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS--------TTEEEEEEE
T ss_pred hcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC--------CCceEEEEe
Confidence 65 1 47876 556667877654310 012223 778887764 778888887 678899885
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccC-CCcee-eEEecCH
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL-GAPVG-SVIVGSK 221 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~~g-g~~~~~~ 221 (359)
+ ++||||.+.+ +++|.++|++||+++|+|++|+++... .....+ +.|++++|+||++ +++.+ |+++.++
T Consensus 173 ~-~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~~~~--~~d~~~~s~~K~l~~g~~~~g~l~~~~ 243 (416)
T 1qz9_A 173 H-VNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP---VDLHQA--GADYAIGCTYKYLNGGPGSQAFVWVSP 243 (416)
T ss_dssp S-BCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCHHHH--TCSEEEECSSSTTCCCTTCCCEEEECT
T ss_pred c-cccCcccccC---HHHHHHHHHHcCCEEEEEccccccCcC---CChhhc--CCCEEEecCcccCCCCCCCeEEEEECH
Confidence 5 5559999988 799999999999999999998764332 222233 5899999999997 44566 8888888
Q ss_pred HHHHHHHHHHH----------------------hhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHh
Q 018243 222 EFIKKARRLRK----------------------TLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLN 275 (359)
Q Consensus 222 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~ 275 (359)
++.+.++.... ....++ .+....+++..+++ ...++..++..++++++.+.|+
T Consensus 244 ~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (416)
T 1qz9_A 244 QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGT-QPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVE 322 (416)
T ss_dssp TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSC-CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCC-CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 87665432110 011111 12223333333443 2344577788889999999998
Q ss_pred cC-C--CceEecCC---ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeC-CCCCHHHHHHHHHHHHH
Q 018243 276 QL-K--GLRVDVDA---VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVH-HQISANDVHYTLSCFQK 348 (359)
Q Consensus 276 ~~-~--g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~-~~~~~~~i~~~~~~l~~ 348 (359)
++ | ++++..+. ..++++++.++. ..++.+.|.++||.+...+..++|++++ ..++++++++++++|++
T Consensus 323 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 323 QRCAAHELTLVTPREHAKRGSHVSFEHPE-----GYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp HHHTTSCCEECSCSSGGGBCSEEEEECTT-----HHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hhccCCCeEEeCCCCHHHcCCEEEEecCC-----HHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 85 6 88875432 136778887753 5688999999999986666789999997 47899999999999999
Q ss_pred HHHHHH
Q 018243 349 IYAGVC 354 (359)
Q Consensus 349 ~~~~~~ 354 (359)
++++..
T Consensus 398 ~~~~~~ 403 (416)
T 1qz9_A 398 ILDRKT 403 (416)
T ss_dssp HHHHTT
T ss_pred HHhccc
Confidence 987643
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=222.56 Aligned_cols=339 Identities=13% Similarity=0.066 Sum_probs=219.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ +....+|.+.+++.+...... .....+...++++.++++++ .+..++++||++|+..++..
T Consensus 44 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~ 123 (448)
T 3dod_A 44 KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKM 123 (448)
T ss_dssp CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHH
Confidence 357899875 223345888888877544321 12335677899999999985 34568999999999999999
Q ss_pred hhhh---cC----CeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCC-----------CHHHHH
Q 018243 73 HCET---RG----SEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTM-----------DIDLIE 122 (359)
Q Consensus 73 ~~~~---~g----~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-----------~~~~l~ 122 (359)
++.. +| ++|++.+++|..... + .....+ ..+..++.+..+.. |+++|+
T Consensus 124 ~~~~~~~~G~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 124 AFQYWKNIGKPEKQKFIAMKNGYHGDTI-G-AVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp HHHHHHHTTCTTCCEEEEEC-------------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCCCCccH-H-HHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHH
Confidence 8752 44 899999998765443 1 122222 12233443333222 378899
Q ss_pred HHhcCCCCCccCCceeEEEEeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCcc
Q 018243 123 AAIRDPKGEIVYPTTRLICLENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAAD 199 (359)
Q Consensus 123 ~~l~~~~~~~~~~~~~~v~i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d 199 (359)
+.+++. ..++++|+++++.++++| .+.+.+++++|+++|++||+++|+||+|... ...+.. ........|
T Consensus 202 ~~l~~~-----~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~--g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 202 QLLEEH-----HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGF--GRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHH-----GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTSSSSGGGGGTCCCS
T ss_pred HHHHhC-----CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccchhhhhhcCCCCC
Confidence 888721 146888999887723555 5677788999999999999999999997522 122221 122222455
Q ss_pred EEEEeccccCCCc-ee-eEEecCHHHHHHHHHH----H-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHH
Q 018243 200 SASVCLSKGLGAP-VG-SVIVGSKEFIKKARRL----R-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLA 271 (359)
Q Consensus 200 ~~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~ 271 (359)
++ +++|.++++ .. |++++++++++.+... . ...+.++..+++.++++..+++...+ +.+++..++.++++
T Consensus 275 i~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~ 352 (448)
T 3dod_A 275 LM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLH 352 (448)
T ss_dssp EE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred EE--EecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 54 567998654 13 7788898888875430 0 12345566677778888888864322 24555556666666
Q ss_pred HHHhc---CCCceEecCCccceEEEEEeccchH---------HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHH
Q 018243 272 EGLNQ---LKGLRVDVDAVETNIVYFEITEDSK---------LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDV 339 (359)
Q Consensus 272 ~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i 339 (359)
+.|++ .|.+... +..+.++++.+..... ....++.+.|.++||.+.|++ .++|++++..++++++
T Consensus 353 ~~l~~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i 429 (448)
T 3dod_A 353 FLLQDLHALPHVGDI--RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEEL 429 (448)
T ss_dssp HHHHHHTTSTTEEEE--EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHH
T ss_pred HHHHHHhcCCCeEEE--EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHH
Confidence 66554 4333322 3467788888765210 014688999999999998876 8999998889999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 018243 340 HYTLSCFQKIYAGVCE 355 (359)
Q Consensus 340 ~~~~~~l~~~~~~~~~ 355 (359)
++++++|+++++++..
T Consensus 430 ~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 430 SEMVAIMKQAIHEVTS 445 (448)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988753
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=216.35 Aligned_cols=317 Identities=15% Similarity=0.069 Sum_probs=208.6
Q ss_pred ccccccCCC-CCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHHHhhhhcCC
Q 018243 4 RTVDLRSDT-VTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 4 ~~id~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
.+||+.... ...+++++++++... .++......+++.+++++|. +..++++||++|+..++.++ +||
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~~------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~---~gd 99 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNTY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---KPK 99 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---CCS
T ss_pred ceeeecccCCCCCCCHHHHHHHHHh------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC---CCC
Confidence 467777654 345558999998721 11223345677777888898 56689999999999999876 899
Q ss_pred eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeE-EEEeccccCCCceecChhh
Q 018243 80 EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRL-ICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-v~i~~~~~~ptG~~~~~~~ 158 (359)
+|++++|+|.+.+.....+...|++++.+ .|++++++. + +++++ |++++ ++||||. +..+
T Consensus 100 ~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~--------~~~~~~v~~~~-p~nptG~--~~~~ 160 (374)
T 2aeu_A 100 KVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I--------DKDTLVIITGS-TMDLKVI--ELEN 160 (374)
T ss_dssp EEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C--------CTTEEEEEECB-CTTSCBC--CHHH
T ss_pred EEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C--------CCccEEEEEcc-CCCCCCC--Cccc
Confidence 99999997665432001255678888777 288888877 4 67899 88855 5669996 5678
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCc-hhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCC
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGV-PVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGG 237 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
+++|.++|++||+++|+|++|+.+....... +... .+.|+++.|+||+++++.+|++++++++++.++.....++.+
T Consensus 161 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~~~~~ 238 (374)
T 2aeu_A 161 FKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK--LGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLE 238 (374)
T ss_dssp HHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH--HTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCB
T ss_pred HHHHHHHHHHcCCEEEEECCcccccccccccCCccc--cCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhccccCC
Confidence 9999999999999999999875542101111 1222 367899999999998776699999999999988776555443
Q ss_pred cchhHHHHHHHHHHHHHhHHHHhhhHHHH--------HHHHHHHHhcC---CCceEecCCccceE-EEEEeccchHH---
Q 018243 238 MRQVGVLCAAALVALQENVLVMLDGDHKK--------AKLLAEGLNQL---KGLRVDVDAVETNI-VYFEITEDSKL--- 302 (359)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~l~~~l~~~---~g~~~~~~~~~~~~-~~~~~~~~~~~--- 302 (359)
.++..++++..+++....+..++..++ .+.|.+.|..+ +|+.+...+ .+.+ .+..... ..
T Consensus 239 --~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~-~g~~~~~~~~~~--~~~~~ 313 (374)
T 2aeu_A 239 --AQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTP-TGFVIKRVYKDD--TINIK 313 (374)
T ss_dssp --CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECS-SEEEEEEEESSH--HHHHH
T ss_pred --CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCC-ceEEEEeecccc--ccccc
Confidence 345566666666654321122333333 34555555554 355553333 3333 3333322 11
Q ss_pred HHHHHHHHH-HhcCceeccCC-----CcEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Q 018243 303 YAACLLKKL-EEHGVLVMPES-----STRVRIVVHH-QISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 303 ~~~~~~~~l-~~~gi~~~~~~-----~~~lRi~~~~-~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+..++...+ +++||.+.|+. ..++||+++. ...+.+++++.+.|+++++++.+
T Consensus 314 ~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 314 KLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp HHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 123365444 78999997653 3479999853 22334588999999988887653
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=225.59 Aligned_cols=334 Identities=13% Similarity=0.113 Sum_probs=223.4
Q ss_pred cccccccCCC---CCC-hHHHHHHHHHcCCCCC-CccCCChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHhhh-
Q 018243 3 TRTVDLRSDT---VTK-PTEAMRAAMASAEVDD-DVLMHDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVHCE- 75 (359)
Q Consensus 3 ~~~id~~~~~---~~~-~~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~~~- 75 (359)
.+++||.++. +.+ .+|++.+++.+..... ..+.+.+...++++.+++++ +.+..++++||++|+..++..++.
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~ 132 (429)
T 3k28_A 53 NEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY 132 (429)
T ss_dssp CEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh
Confidence 3579999874 233 3588888887654332 22345678899999999998 455568899999999999998764
Q ss_pred hcCCeEEecCCCcceeeccccccccCCccceeeecCCC-CC-------------CCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GT-------------MDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
.++++|++.+++|..... ......|.....+..+.. +. -|+++|++.++++. +++++|+
T Consensus 133 ~~~~~vi~~~~~yhg~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-----~~~~~vi 205 (429)
T 3k28_A 133 TGRNKILKFIGCYHGHGD--SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG-----DDIACVI 205 (429)
T ss_dssp HTCCEEEEEETCCCCSCG--GGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG-----GGEEEEE
T ss_pred hCCCEEEEECCCcCCCcH--HHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC-----CCEEEEE
Confidence 245678887777655443 112223322211111111 00 08899999887421 3678888
Q ss_pred EeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCcee-eEE
Q 018243 142 LENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPVG-SVI 217 (359)
Q Consensus 142 i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~g-g~~ 217 (359)
++++.+ ++|... +.+++++|.++|++||+++|+||+|.. . ..+.. ...+....|++ ++||.++++.. |++
T Consensus 206 ~ep~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g-~--~~g~~~~~~~~~~~~di~--t~sK~~~~G~~iG~~ 279 (429)
T 3k28_A 206 VEPVAG-NMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTG-F--RVAYNCGQGYYGVTPDLT--CLGKVIGGGLPVGAY 279 (429)
T ss_dssp ECSSBC-TTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT-T--TSSTTHHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred EcCCCC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccc-c--ccCcchHHHHhCCCCcee--hhhhhhcCCCCeEEE
Confidence 866655 566554 578899999999999999999999842 2 22321 11222245554 67799975433 788
Q ss_pred ecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcC----CCceEecCCccceEE
Q 018243 218 VGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVETNIV 292 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~ 292 (359)
++++++++.+..... ..+.++..+++.++++..+++...++.+++..++.+++++.|+++ +.+... +..+.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~g~~~ 357 (429)
T 3k28_A 280 GGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHI--NRAGSMI 357 (429)
T ss_dssp EECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE--EEETTEE
T ss_pred EEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE--EeeccEE
Confidence 889998877543221 234455667777888888886433446677777888887777663 333222 3467777
Q ss_pred EEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 293 ~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
++.+..+ ......++.+.|.++||.+.+++...+|+++ .++++++++++++|+++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~~--~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 358 GIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLST--VHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp EEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCT--TCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEEC--CCCHHHHHHHHHHHHHHHHHH
Confidence 7776421 1234578889999999999998778888865 799999999999999998765
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=223.95 Aligned_cols=339 Identities=15% Similarity=0.109 Sum_probs=224.4
Q ss_pred ccccccCCC----CCChHHHHHHHHHcCCCCCC--c--cCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDT----VTKPTEAMRAAMASAEVDDD--V--LMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~----~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~~ 73 (359)
.++||.++. ...++|++.+++.+...... . ....+...++++.++++++. +..++++||++|+..++..+
T Consensus 51 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~ 130 (449)
T 3a8u_X 51 KVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMV 130 (449)
T ss_dssp EEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 468887543 23336899999887654321 1 23356678999999999954 34588899999999999887
Q ss_pred hh-------hcCCeEEecCCCcceeeccccccccCCc------------cceeeecCCCC-----CCC--------HHHH
Q 018243 74 CE-------TRGSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDG-----TMD--------IDLI 121 (359)
Q Consensus 74 ~~-------~~g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~-----~~~--------~~~l 121 (359)
.. .++++|++.+++|..... ......|. .+..++.+..+ .+| +++|
T Consensus 131 ~~~~~~~g~~~~~~vi~~~~~yhg~~~--~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~l 208 (449)
T 3a8u_X 131 RAYWRLKGQATKTKMIGRARGYHGVNI--AGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADEL 208 (449)
T ss_dssp HHHHHHTTCTTCCEEEEETTCCCCSSH--HHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCcCCCCh--hhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHH
Confidence 63 156889998888765443 11222221 12333322111 246 8999
Q ss_pred HHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccc-cchhhhcCchhHhhhcCcc
Q 018243 122 EAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARI-FNAAVALGVPVRRLVQAAD 199 (359)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~-~~~~~~~~~~~~~~~~~~d 199 (359)
++.+++.. .+++++|++++ .+|+||. ..+.+++++|.++|++||+++|+||+|. ++..+ .......+....|
T Consensus 209 e~~l~~~~----~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~~~~~~~~d 282 (449)
T 3a8u_X 209 LKLIELHD----ASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGVTPD 282 (449)
T ss_dssp HHHHHHHC----GGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHHHHTCCCS
T ss_pred HHHHHhcC----CCCEEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-cchhhhhcCCCCC
Confidence 99987310 02567887754 4557997 5568999999999999999999999984 43221 1111222222457
Q ss_pred EEEEeccccCCCc-e-eeEEecCHHHHHHHHHHHH-------hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHH
Q 018243 200 SASVCLSKGLGAP-V-GSVIVGSKEFIKKARRLRK-------TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKL 269 (359)
Q Consensus 200 ~~~~s~~K~~g~~-~-gg~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 269 (359)
++ |+||+++++ . .|++++++++++.+..... ..+.++..+++.++++..+++...+ ...++..++.++
T Consensus 283 i~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~ 360 (449)
T 3a8u_X 283 LM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPH 360 (449)
T ss_dssp EE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55 777999753 1 2557778888877653211 1234455566667777777754332 356677788889
Q ss_pred HHHHHhcCCCceEe-cCCccceEEEEEeccch-HH--HHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 270 LAEGLNQLKGLRVD-VDAVETNIVYFEITEDS-KL--YAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 270 l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
+++.|++++.+... ..+..++++++.++... .. +..++.+.|.++||.+.+++ .++|++++..++++++++++++
T Consensus 361 l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~ 439 (449)
T 3a8u_X 361 FEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDA 439 (449)
T ss_dssp HHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHH
Confidence 99988875323211 11346788999887521 11 33478899988999998876 8999998889999999999999
Q ss_pred HHHHHHHH
Q 018243 346 FQKIYAGV 353 (359)
Q Consensus 346 l~~~~~~~ 353 (359)
|+++++++
T Consensus 440 l~~~l~~~ 447 (449)
T 3a8u_X 440 VGEVLNKL 447 (449)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-28 Score=221.04 Aligned_cols=313 Identities=16% Similarity=0.160 Sum_probs=209.2
Q ss_pred CccCCChHHHHHH----HHHHHHhCCC----CeEEcCCchHHHHHHHHHhhh-------hcC-----C-eEEecCCCcce
Q 018243 32 DVLMHDPTAFRLE----TEMAKVMGKE----AGLFVPSGTMGNLISVLVHCE-------TRG-----S-EVILGDNSHIH 90 (359)
Q Consensus 32 ~~~~~~~~~~~l~----~~la~~~~~~----~~~~~~~gt~a~~~~l~~~~~-------~~g-----~-~vl~~~~~~~~ 90 (359)
..|..++....+| +.+++++|.+ ..++++|||+|+..++.++.. ++| + .|+++.++|++
T Consensus 122 ~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 122 FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 3455566655554 4568888987 348889999999999998863 245 5 78999999998
Q ss_pred eeccccccccCCc---cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH
Q 018243 91 IYENGGISTIGGV---HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK 167 (359)
Q Consensus 91 ~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~ 167 (359)
..+ + +...|. +++.++.+.++.+|+++|++.+++.... ..++++|++ +.++||||.+.+ +++|.++|+
T Consensus 202 ~~~-~--~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~--g~~~~~V~~-~~~~~~tG~i~~---l~~I~~la~ 272 (504)
T 2okj_A 202 IKK-A--GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQK--GYVPFYVNA-TAGTTVYGAFDP---IQEIADICE 272 (504)
T ss_dssp HHH-H--HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHT--TCEEEEEEE-CBSCSSSCCBCC---HHHHHHHHH
T ss_pred HHH-H--HHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHC--CCCceEEEE-eCCCCCCCCcCC---HHHHHHHHH
Confidence 765 2 444454 7888888888999999999999731000 025788888 556669999765 899999999
Q ss_pred HcCcEEEEecccccchhhhcCc-hhHhhhcCccEEEEeccccCCCcee-eEEecCH-HHHHHHHH-HHHhh-CCCc----
Q 018243 168 KHGLKLHIDGARIFNAAVALGV-PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSK-EFIKKARR-LRKTL-GGGM---- 238 (359)
Q Consensus 168 ~~~~~li~D~a~~~~~~~~~~~-~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~-~~~~~~~~-~~~~~-~~~~---- 238 (359)
+||+++|+|++|+.+....... ....-...+|++++++||++++|.+ |+++.++ ++.+.... ...+. +...
T Consensus 273 ~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (504)
T 2okj_A 273 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDV 352 (504)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCG
T ss_pred HcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccC
Confidence 9999999999986655432111 1111113789999999999998876 7777654 55554211 11111 0000
Q ss_pred -------------chhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-CccceEEEEEe-ccc---
Q 018243 239 -------------RQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVETNIVYFEI-TED--- 299 (359)
Q Consensus 239 -------------~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~-~~~--- 299 (359)
+......++++.++ ....++..++..++++++.+.|++.|++++..+ +....++.|.. +..
T Consensus 353 ~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 353 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRG 432 (504)
T ss_dssp GGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred cCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccc
Confidence 11122333334444 234445777888999999999999989998642 12444444543 320
Q ss_pred ----hH------HHHHHHHHHHHhcCceecc----CC-CcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHH
Q 018243 300 ----SK------LYAACLLKKLEEHGVLVMP----ES-STRVRIVVH-HQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 300 ----~~------~~~~~~~~~l~~~gi~~~~----~~-~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.. ....++.+.|.++|+.+.. .+ ..++|+++. +.++++++++++++|+++++++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0145788899888864322 12 258999985 7899999999999999887654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-28 Score=215.42 Aligned_cols=283 Identities=16% Similarity=0.104 Sum_probs=209.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+..++++||++|+..++. ++ ++||+|+++.+.|.+.+... ..++..|.+++.++.+
T Consensus 54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 127 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL---- 127 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH----
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC----
Confidence 56789999999999999888999999999999999 66 59999999999987654310 1256678899888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHc----CcEEEEecccccchhhhcCchh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH----GLKLHIDGARIFNAAVALGVPV 191 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~----~~~li~D~a~~~~~~~~~~~~~ 191 (359)
| +++++.++ +++++|+++++ +||||.+++ +++|.++|+++ |+++|+|++|+.+... ..
T Consensus 128 -d-~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~----~~ 189 (393)
T 1n8p_A 128 -L-NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS----NP 189 (393)
T ss_dssp -H-HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC----CG
T ss_pred -h-HHHHHhcc--------cCceEEEEECC-CCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC----CH
Confidence 7 88999988 68999999555 559999987 89999999999 9999999998655432 22
Q ss_pred HhhhcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 018243 192 RRLVQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKA 267 (359)
Q Consensus 192 ~~~~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (359)
..+ +.|+++.|+||++|+++ ||++++ ++++.+.+......++.+. ++..++++..+++.... ++++..+++
T Consensus 190 ~~~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~ 264 (393)
T 1n8p_A 190 LNF--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP--SPFDAWLTHRGLKTLHL-RVRQAALSA 264 (393)
T ss_dssp GGG--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHTTHHH-HHHHHHHHH
T ss_pred HHc--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHhccchHHH-HHHHHHHHH
Confidence 222 68999999999998653 488887 5888888877766666554 34444445555654433 667777888
Q ss_pred HHHHHHHhcCCC-ce-EecCC---------------c-c-ceEEEEEeccchHHHHHHHHHHHHhcCceeccC-------
Q 018243 268 KLLAEGLNQLKG-LR-VDVDA---------------V-E-TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------- 321 (359)
Q Consensus 268 ~~l~~~l~~~~g-~~-~~~~~---------------~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------- 321 (359)
..+.+.|++.+. +. +..+. . . ++++++.++.. ..+...+.+.|...++.+..+
T Consensus 265 ~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~l~~l~~~~~~~s~G~~~s~~~ 343 (393)
T 1n8p_A 265 NKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-AEAASKFASSTRLFTLAESLGGIESLLE 343 (393)
T ss_dssp HHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCCCSSCEEE
T ss_pred HHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-HHHHHHHHhhCCcceECCCCCCCcceee
Confidence 889999988755 43 21221 1 3 67888998752 246677777775444332111
Q ss_pred --------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 322 --------------------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 322 --------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+.+|++++...++++++.+.++|+++
T Consensus 344 ~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 344 VPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1468999999888888899888888764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=220.31 Aligned_cols=338 Identities=15% Similarity=0.080 Sum_probs=212.9
Q ss_pred cccccccCC---CCCCh-HHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD---TVTKP-TEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~---~~~~~-~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~~ 72 (359)
.+++||.++ ++.+. +|++.+++.+...... .....+...++++.++++++. +..++++||++|+..++..
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~ 108 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKL 108 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 357899885 33333 5888888776432211 123456778999999999965 3468888999999999998
Q ss_pred hhhh-------cCCeEEecCCCcceeeccccccccCCc--------------cceeeecCCC---CCCCHHHHHHHhcCC
Q 018243 73 HCET-------RGSEVILGDNSHIHIYENGGISTIGGV--------------HPRTVKNNQD---GTMDIDLIEAAIRDP 128 (359)
Q Consensus 73 ~~~~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~~---~~~~~~~l~~~l~~~ 128 (359)
++.. .++.|++.+++|..... ......+. .+..++.+.. +..|+++|++.+++.
T Consensus 109 ~~~~~~~~g~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 186 (430)
T 3i4j_A 109 ARQYHVERGEPGRFKVITRVPSYHGASL--GSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLERE 186 (430)
T ss_dssp HHHHHHHTTCTTCCEEEEETTC---------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEeCCcCCCCc--ccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhc
Confidence 8741 36789999988766443 11222221 3333433322 223568888888731
Q ss_pred CCCccCCceeEEEEeccccC-CCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhh-hcCccEEEE
Q 018243 129 KGEIVYPTTRLICLENTHAN-CGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRL-VQAADSASV 203 (359)
Q Consensus 129 ~~~~~~~~~~~v~i~~~~~~-ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~~~~d~~~~ 203 (359)
. ..++++|++++ .++ ++|. +++.+++++|.++|++||+++|+||+|.... ..+. ....+ ....|++
T Consensus 187 ~----~~~~~~vi~~p-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~--~~g~~~~~~~~~~~~~di~-- 257 (430)
T 3i4j_A 187 G----PETVAAFMAEP-VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMG--RCGSPLALSRWSGVTPDIA-- 257 (430)
T ss_dssp C----GGGEEEEEECS-SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT--TTSSSSGGGGTTTCCCSEE--
T ss_pred C----CCCEEEEEEcC-cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC--cccchhhhhhhcCCCCcEE--
Confidence 0 03566777744 555 6776 6677889999999999999999999975221 2222 11122 2234555
Q ss_pred eccccCCCc-ee-eEEecCHHHHHHHHHHHH--hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHh---
Q 018243 204 CLSKGLGAP-VG-SVIVGSKEFIKKARRLRK--TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLN--- 275 (359)
Q Consensus 204 s~~K~~g~~-~g-g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~--- 275 (359)
++||.++++ .. |++++++++++.+..... ..+.++..+++.++++..+++...+ +..++..++.+++++.|+
T Consensus 258 t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (430)
T 3i4j_A 258 VLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQ 337 (430)
T ss_dssp EECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 567999753 22 778889999888754311 2344555667777777777764322 244455555555555554
Q ss_pred -cCCCceEecCCccceEEEEEeccch-------HHHHHHHHHHHHhcCceeccC-------CCcEEEEEeCCCCCHHHHH
Q 018243 276 -QLKGLRVDVDAVETNIVYFEITEDS-------KLYAACLLKKLEEHGVLVMPE-------SSTRVRIVVHHQISANDVH 340 (359)
Q Consensus 276 -~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~-------~~~~lRi~~~~~~~~~~i~ 340 (359)
+.|++... +..++++++.+.+.. .....++.+.|.++||.+.++ +..++||+++...++++++
T Consensus 338 ~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~ 415 (430)
T 3i4j_A 338 ARFPQMMQV--RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415 (430)
T ss_dssp HHCTTEEEE--EEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHH
T ss_pred HhCCCeEEE--EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHH
Confidence 45566543 346778888775311 112367899999999999876 3678999998889999999
Q ss_pred HHHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAGV 353 (359)
Q Consensus 341 ~~~~~l~~~~~~~ 353 (359)
+++++|+++++++
T Consensus 416 ~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 416 GLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=231.73 Aligned_cols=332 Identities=10% Similarity=0.044 Sum_probs=224.6
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC-----CCC----c-cCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV-----DDD----V-LMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~-----~~~----~-~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~ 71 (359)
..+.|..+....+++.+.+++.+... +.. . ....+...++++.+++++|.+. .++++|+++++..++.
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~ 146 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLML 146 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHH
Confidence 45677776665544444443333110 000 0 1122445789999999999863 3666667777777777
Q ss_pred HhhhhcCC---eEEecCCCcceeeccc-cccccCCccce-----eeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEE
Q 018243 72 VHCETRGS---EVILGDNSHIHIYENG-GISTIGGVHPR-----TVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 72 ~~~~~~g~---~vl~~~~~~~~~~~~~-~~~~~~g~~~~-----~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i 142 (359)
++. ++++ +|+++.++|.+..... ..++..|.++. .++.+.++.+|+++|++.++++ .+++++|++
T Consensus 147 ~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~-----~~~~~lv~~ 220 (465)
T 3e9k_A 147 SFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKE-----GDSIAVILF 220 (465)
T ss_dssp HHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHH-----GGGEEEEEE
T ss_pred Hhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhc-----CCCeEEEEE
Confidence 776 3554 5999999997743200 13556787763 2255667889999999999731 047889988
Q ss_pred eccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccC-CCcee-eEEecC
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL-GAPVG-SVIVGS 220 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~-g~~~g-g~~~~~ 220 (359)
+++ +||||.+.+ +++|.++|++||+++|+|++|+.+... .....+ ++|++++|+||++ ++|.| |+++.+
T Consensus 221 ~~~-~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~~---~~~~~~--~~D~~~~s~~K~l~~gp~~~g~l~~~ 291 (465)
T 3e9k_A 221 SGV-HFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNVE---LYLHDW--GVDFACWCSYKYLNAGAGGIAGAFIH 291 (465)
T ss_dssp ESB-CTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHH--TCCEEEECSSSTTCCCTTCCCEEEEC
T ss_pred eCc-ccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCcC---Cchhhc--CCCEEEECcccccccCCCceEEEEEc
Confidence 665 559999988 799999999999999999998765442 233333 7899999999999 46776 888888
Q ss_pred HHHHHHHHHHHH---------hh--C--CC----------cchhHHHHHHHHHHHH---H-hHHHHhhhHHHHHHHHHHH
Q 018243 221 KEFIKKARRLRK---------TL--G--GG----------MRQVGVLCAAALVALQ---E-NVLVMLDGDHKKAKLLAEG 273 (359)
Q Consensus 221 ~~~~~~~~~~~~---------~~--~--~~----------~~~~~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~l~~~ 273 (359)
+++.+.+..... .+ . .. ...+....++...+++ . ..+..+++..++++++.+.
T Consensus 292 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (465)
T 3e9k_A 292 EKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYL 371 (465)
T ss_dssp GGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 777654321100 00 0 00 0112222333333432 2 2455777788889999999
Q ss_pred HhcC----------CCceEecCC---ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEe-CCCCCHHHH
Q 018243 274 LNQL----------KGLRVDVDA---VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVV-HHQISANDV 339 (359)
Q Consensus 274 l~~~----------~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~-~~~~~~~~i 339 (359)
|+++ +++++..+. ..++++++.++. +..++.+.|.++||.+....++++|+++ +..++++++
T Consensus 372 L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~----~~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi 447 (465)
T 3e9k_A 372 IKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV----PNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDV 447 (465)
T ss_dssp HHHHCC---------CEEECSCSSGGGBCSCEEEEECC----TTCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHH
T ss_pred HHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC----CHHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHH
Confidence 9884 688875432 137788888873 4568999999999999877778999998 789999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018243 340 HYTLSCFQKIYAGVC 354 (359)
Q Consensus 340 ~~~~~~l~~~~~~~~ 354 (359)
+++++.|++++++..
T Consensus 448 ~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 448 YKFTNLLTSILDSAE 462 (465)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-32 Score=244.51 Aligned_cols=329 Identities=12% Similarity=0.060 Sum_probs=231.0
Q ss_pred ccccccCCCCCC-hHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCC--------CCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTK-PTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGK--------EAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~--------~~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||..+.+.. ++|.+.+++.+.... ...|.. ...++++.+++++.. +..++++||++++..++..+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTY--ASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF 109 (392)
Confidence 578998887754 448899998886533 223433 277888888887632 23366777788888888888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC-C--CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCC
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-Q--DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCG 150 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~pt 150 (359)
. ++|++|+++.|+|.+... .+...|.+++.++.+ . ++.+|++++++.+++ .++++|+++ .++|||
T Consensus 110 ~-~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-------~~~~~v~~~-~~~npt 177 (392)
T 3b1d_A 110 T-KEGEAVLINSPVYPPFAR---SVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-------NDVKLYLLC-NPHNPG 177 (392)
Confidence 7 589999999999887664 266778888888764 2 245899999998874 467888884 557799
Q ss_pred ceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc---CccEEEEeccccCCCce-e-eEEecC-HHH
Q 018243 151 GRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ---AADSASVCLSKGLGAPV-G-SVIVGS-KEF 223 (359)
Q Consensus 151 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~---~~d~~~~s~~K~~g~~~-g-g~~~~~-~~~ 223 (359)
|.+++.+++++|+++|++||+++|+||+|..+..... ..+...+.. +..+++.|+||.+|.++ . |+++++ +++
T Consensus 178 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 257 (392)
T 3b1d_A 178 GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTL 257 (392)
Confidence 9999999999999999999999999999765443211 112222211 23355669999997543 2 777775 458
Q ss_pred HHHHHHHHHhhCCCcchhHHHHHHHHHHHH---HhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccc
Q 018243 224 IKKARRLRKTLGGGMRQVGVLCAAALVALQ---ENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
++.++.....++... .+...++++..+++ .+.++.++++.++++++.+.|++ +|++.+. ++..+.++|+.++.
T Consensus 258 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~i~~~~- 334 (392)
T 3b1d_A 258 CAQFKHQQLVNNHHE-VSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KPQGTYLIWLDFSD- 334 (392)
Confidence 888766554442111 13333444444443 34444666777888999999988 6788764 34455566788764
Q ss_pred hHHHHHHHHHHHH-hcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLE-EHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 300 ~~~~~~~~~~~l~-~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+.+..++.+.|. ++||.+.++. ..++|++++ .+++++++++++|+++++
T Consensus 335 ~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 335 YGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 2246778999994 8999997753 457999985 568999999999988775
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=220.08 Aligned_cols=338 Identities=16% Similarity=0.094 Sum_probs=219.5
Q ss_pred ccccccCCC----CCChHHHHHHHHHcCCCCC--C-ccCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhh
Q 018243 4 RTVDLRSDT----VTKPTEAMRAAMASAEVDD--D-VLMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~----~~~~~~~~~~a~~~~~~~~--~-~~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~ 74 (359)
.++||.++. ...++|++.+++.+..... . .....+...++++.++++++.+ ..++++||++|+..++..+.
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~ 123 (433)
T 1zod_A 44 AILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAK 123 (433)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 467886653 2233578888876643211 1 1122456789999999999753 45788899999999998765
Q ss_pred h-hcCCeEEecCCCcceeeccccc------------cccCCccceeeecCC--CC--------CCCHHHHHHHhcCCCCC
Q 018243 75 E-TRGSEVILGDNSHIHIYENGGI------------STIGGVHPRTVKNNQ--DG--------TMDIDLIEAAIRDPKGE 131 (359)
Q Consensus 75 ~-~~g~~vl~~~~~~~~~~~~~~~------------~~~~g~~~~~v~~~~--~~--------~~~~~~l~~~l~~~~~~ 131 (359)
. ..+++|++.+|+|.+... +.. ....|...+.++... .+ .+|+++|++.+++..
T Consensus 124 ~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-- 200 (433)
T 1zod_A 124 LVTGKYEIVGFAQSWHGMTG-AAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS-- 200 (433)
T ss_dssp HHHTCCEEEEETTCCCCSSH-HHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHC--
T ss_pred HhhCCCeEEEECCCcCCCCh-hHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcC--
Confidence 3 235789988887654332 000 001233332222111 11 135899999887310
Q ss_pred ccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEecccc
Q 018243 132 IVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKG 208 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~ 208 (359)
.+++++|++ ++.+||||. .++.+++++|+++|++||+++|+||+|.... ..+. .........|++ |++|.
T Consensus 201 --~~~~~~vi~-~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g--~~g~~~~~~~~~~~~di~--s~sK~ 273 (433)
T 1zod_A 201 --SGNLAAFIA-EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVG--RTGTMFACQRDGVTPDIL--TLSKT 273 (433)
T ss_dssp --CSCEEEEEE-CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTT--TTSSSSTHHHHTCCCSEE--EECHH
T ss_pred --CCCeEEEEE-ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCC--cCchHhHHhhcCCCCCEE--Eeccc
Confidence 035677777 455668995 5678999999999999999999999986211 1121 112222245554 77899
Q ss_pred CCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CCceE
Q 018243 209 LGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KGLRV 282 (359)
Q Consensus 209 ~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~ 282 (359)
|+++.+ |++++++++++.+.......+.++..+++.++++..+++...+ ...++..++++++++.|+++ |.+..
T Consensus 274 ~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 353 (433)
T 1zod_A 274 LGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD 353 (433)
T ss_dssp HHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred ccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 975433 8888999988887542112224454566666666777654322 24566677777787777663 44333
Q ss_pred ecCCccceEEEEEeccch------HHHHHHHHHHHHhcCceeccCCC----cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITEDS------KLYAACLLKKLEEHGVLVMPESS----TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~~~~~~~----~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
. +..++++++.++... ..+..++.+.|.++||.+.+++. .++||+++...+++++++++++|++++++
T Consensus 354 ~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 354 V--RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp E--EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred E--EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 2 346788888775310 12467899999999999987652 78999988889999999999999998876
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 432 ~ 432 (433)
T 1zod_A 432 A 432 (433)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=220.06 Aligned_cols=336 Identities=15% Similarity=0.127 Sum_probs=218.4
Q ss_pred cccccccCC---CCC-ChHHHHHHHHHcCCCCCC----ccCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVT-KPTEAMRAAMASAEVDDD----VLMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~-~~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ ++. ..+|++.+++.+...... ..+..+...++++.++++++. +..++++||++|+..++.
T Consensus 64 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk 143 (453)
T 4ffc_A 64 NSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIK 143 (453)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHH
Confidence 357999886 223 335888888776432211 124567778999999999973 346889999999999998
Q ss_pred Hhhhh-cCCeEEecCCCcceeeccccccccCC-------------ccceeeecCC----CCCCC--------HHHHHHHh
Q 018243 72 VHCET-RGSEVILGDNSHIHIYENGGISTIGG-------------VHPRTVKNNQ----DGTMD--------IDLIEAAI 125 (359)
Q Consensus 72 ~~~~~-~g~~vl~~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~----~~~~~--------~~~l~~~l 125 (359)
.++.. .+++|++.+++|..... + .....+ ..+..++.+. ....+ .+.|++.+
T Consensus 144 ~a~~~~g~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i 221 (453)
T 4ffc_A 144 VARLATGRPAVVAFDNAYHGRTN-L-TMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI 221 (453)
T ss_dssp HHHHHHCCCEEEEETTCCCCSSH-H-HHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEEcCccCCcch-H-HHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc
Confidence 87643 34678888887654432 1 111111 1233333331 11222 34555555
Q ss_pred cCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEE
Q 018243 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASV 203 (359)
Q Consensus 126 ~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~ 203 (359)
.. ..+++|++++..++.+....+.+++++|+++|++||+++|+||+|... ...+. .........|++
T Consensus 222 ~~-------~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~--g~~g~~~a~~~~~~~pdi~-- 290 (453)
T 4ffc_A 222 GA-------QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF--ARTGAWFASEHEGIVPDIV-- 290 (453)
T ss_dssp CG-------GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT--TTTSSSSTHHHHTCCCSEE--
T ss_pred CC-------CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCC--CcccccchhhhcCCCcchH--
Confidence 42 467788886655533334557789999999999999999999997522 12221 122222245554
Q ss_pred eccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----C
Q 018243 204 CLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ----L 277 (359)
Q Consensus 204 s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~----~ 277 (359)
+++|.++++.. |++++++++++.+... ..+.++..+++.++++..+++...+ +..++..++.+++++.|++ .
T Consensus 291 t~sK~~~~G~~~G~~~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 368 (453)
T 4ffc_A 291 TMAKGIAGGMPLSAVTGRAELMDAVYAG--GLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEV 368 (453)
T ss_dssp EECGGGGTTSSCEEEEEEHHHHTTSCTT--SSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhcCCcCeEEEEECHHHHhhhccc--CcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56798865323 6788898888776432 2445566677777777777764322 2445555555555555544 4
Q ss_pred CCceEecCCccceEEEEEecc-----chHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITE-----DSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
|.+... +..+.++++.+.. +......++.+.|.++||.+.+++. ..+|++++..++++++++++++|++++
T Consensus 369 ~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (453)
T 4ffc_A 369 DIIGEV--RGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446 (453)
T ss_dssp SSEEEE--EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEE--EeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 544432 3467788887742 2234678899999999999988765 789999998999999999999999999
Q ss_pred HHHHh
Q 018243 351 AGVCE 355 (359)
Q Consensus 351 ~~~~~ 355 (359)
+++..
T Consensus 447 ~~~~~ 451 (453)
T 4ffc_A 447 RAKAS 451 (453)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 88754
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=224.67 Aligned_cols=302 Identities=18% Similarity=0.149 Sum_probs=215.3
Q ss_pred cCCChHHH----HHHHHHHHHhCCC----CeEEcCCchHHHHHHHHHhhhh----cC---CeEEecCCCcceeecccccc
Q 018243 34 LMHDPTAF----RLETEMAKVMGKE----AGLFVPSGTMGNLISVLVHCET----RG---SEVILGDNSHIHIYENGGIS 98 (359)
Q Consensus 34 ~~~~~~~~----~l~~~la~~~~~~----~~~~~~~gt~a~~~~l~~~~~~----~g---~~vl~~~~~~~~~~~~~~~~ 98 (359)
|...+... ++++.+++++|.+ ..++++||++|+..++.+++.. +| ++|+++.++|.+... .+
T Consensus 99 ~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~---~~ 175 (497)
T 3mc6_A 99 PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK---AA 175 (497)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH---HH
T ss_pred cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH---HH
Confidence 44455544 4555577788887 3588889999999999988631 35 799999999988664 37
Q ss_pred ccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec
Q 018243 99 TIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177 (359)
Q Consensus 99 ~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~ 177 (359)
...|++++.++.++ ++.+|+++|++.++ +++++|++++ ++||||.+.+ +++|.++|++||+++|+|+
T Consensus 176 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~--------~~~~~v~~~~-p~nptG~~~~---l~~i~~la~~~g~~livD~ 243 (497)
T 3mc6_A 176 YYFGMKLRHVELDPTTYQVDLGKVKKFIN--------KNTVLLVGSA-PNFPHGIADD---IEGLGKIAQKYKLPLHVDS 243 (497)
T ss_dssp HHSCCEEEEECBCTTTCSBCTTTTGGGCC--------SSEEEEEEET-TCTTTCCCCS---CTTTTTHHHHTTCCEEEET
T ss_pred HHcCCeEEEEecCcccCcCCHHHHHHHHh--------hCCEEEEEEC-CCCCCCcCCC---HHHHHHHHHHhCCEEEEEC
Confidence 77899999998876 78899999999998 6789998855 5559999877 7889999999999999999
Q ss_pred ccccchhhhc-----C-c-hhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH-HHHhh-CCC-------cch
Q 018243 178 ARIFNAAVAL-----G-V-PVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR-LRKTL-GGG-------MRQ 240 (359)
Q Consensus 178 a~~~~~~~~~-----~-~-~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~-~~~~~-~~~-------~~~ 240 (359)
+|+.+...+. + . .......++|+++.++||++++|.| |+++.+++....... ....+ +.. .+.
T Consensus 244 a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 323 (497)
T 3mc6_A 244 CLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSR 323 (497)
T ss_dssp TTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSC
T ss_pred cchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCC
Confidence 9764332211 0 1 1111224689999999999866666 777776554433210 00110 110 011
Q ss_pred hHH---HHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcC
Q 018243 241 VGV---LCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHG 315 (359)
Q Consensus 241 ~~~---~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 315 (359)
+.. .+++++..+ ....++..++..++++++++.|++ +||+++..+ ..++++++.... .+..++.+.|.++|
T Consensus 324 ~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~-~~~~~v~~~~~~---~~~~~l~~~L~~~G 399 (497)
T 3mc6_A 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN-PRYSVISFSSKT---LNIHELSDRLSKKG 399 (497)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC-CCSSEEEEECTT---TTHHHHHHHHHTTT
T ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CCeeEEEEeCCC---CCHHHHHHHHHhCC
Confidence 111 223333333 233344777888899999999999 699998544 466677776553 47889999999999
Q ss_pred ceeccCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 316 VLVMPES-STRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 316 i~~~~~~-~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
|.+.... ...+|++++ ..+++++++++++|+++++++.+
T Consensus 400 i~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 400 WHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp CBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 9886543 456899998 78999999999999999988754
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=225.66 Aligned_cols=331 Identities=17% Similarity=0.133 Sum_probs=205.5
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCCC-----ccCC----ChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDDD-----VLMH----DPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~----~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
..++|..+....++|.+.+++.+...... .|.. .+...++++.+++++|.+ ..++++||++++..++..
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 97 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHS 97 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHH
Confidence 34566666555667888888876432211 1211 123579999999999985 346777778999999888
Q ss_pred hhh-------hcCCeEEecCCCcceee-------------cc-ccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCC
Q 018243 73 HCE-------TRGSEVILGDNSHIHIY-------------EN-GGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKG 130 (359)
Q Consensus 73 ~~~-------~~g~~vl~~~~~~~~~~-------------~~-~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~ 130 (359)
+.. ++|++|+++.|+|.... .. ....+..|.+++.++.+. ++.+|+++|++.++
T Consensus 98 ~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---- 173 (432)
T 3a9z_A 98 TVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---- 173 (432)
T ss_dssp HHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC----
T ss_pred HHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc----
Confidence 751 37888888888765421 10 011234688898888765 67899999999998
Q ss_pred CccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC----------cEEEEecccccchhhhcCchhHhhhcCccE
Q 018243 131 EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG----------LKLHIDGARIFNAAVALGVPVRRLVQAADS 200 (359)
Q Consensus 131 ~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~----------~~li~D~a~~~~~~~~~~~~~~~~~~~~d~ 200 (359)
+++++|++++ ++||||.+++ +++|.++|+++| +++|+|++|+.+.. ......+ +.|+
T Consensus 174 ----~~~~~v~~~~-~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~~~~~~~--~~d~ 240 (432)
T 3a9z_A 174 ----PTTCLVTIML-ANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---RVDVEDL--GVDF 240 (432)
T ss_dssp ----TTEEEEECCS-BCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---CCCHHHH--CCSE
T ss_pred ----CCceEEEEEC-cccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---ccChhhc--CCCE
Confidence 6789998855 5569999998 678999999999 99999999866432 2223333 6888
Q ss_pred EEEeccccCCCceeeEEecCHHH-HHHHHHH-------HHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHH
Q 018243 201 ASVCLSKGLGAPVGSVIVGSKEF-IKKARRL-------RKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKL 269 (359)
Q Consensus 201 ~~~s~~K~~g~~~gg~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~ 269 (359)
++.|+||++|. ..|+++.+++. ...++.. .....++. +....+++..++ +...++..++..+++++
T Consensus 241 ~~~s~~K~~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~ 317 (432)
T 3a9z_A 241 LTIVGHKFYGP-RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTE--NTPMIAGLGKAADLVSENCETYEAHMRDIRDY 317 (432)
T ss_dssp EEEEGGGTTCC-SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEehhHhcCC-cceEEEEccccccCCcCceeecCCccccccCCCc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999874 46777777654 2222110 01111122 222222322233 33445567778888999
Q ss_pred HHHHHhcCCCceEec-CC-----ccceEEEEEeccchHHHHHHHHHHHH----hcCceecc-------------C-----
Q 018243 270 LAEGLNQLKGLRVDV-DA-----VETNIVYFEITEDSKLYAACLLKKLE----EHGVLVMP-------------E----- 321 (359)
Q Consensus 270 l~~~l~~~~g~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~----~~gi~~~~-------------~----- 321 (359)
+.+.|++++|+++.. .+ ..+..+++.+... +.+..++.+.+. +.|+.+.+ +
T Consensus 318 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~ 396 (432)
T 3a9z_A 318 LEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-QLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDV 396 (432)
T ss_dssp HHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-TCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHH
T ss_pred HHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-CCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccc
Confidence 999998865665421 11 1233566666541 123445555442 22332222 1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 322 SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 322 ~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
..+++|++++..++++++++++++|+++++++++
T Consensus 397 ~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 397 ARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred cCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 1368999998778999999999999999987654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=220.72 Aligned_cols=337 Identities=15% Similarity=0.108 Sum_probs=221.5
Q ss_pred cccccccCC---CCCCh-HHHHHHHHHcCCCCCC---ccCCChHHHHHHHHHHHHhCCCC-eEEcCCchHHHHHHHHHhh
Q 018243 3 TRTVDLRSD---TVTKP-TEAMRAAMASAEVDDD---VLMHDPTAFRLETEMAKVMGKEA-GLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 3 ~~~id~~~~---~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~l~~~~ 74 (359)
.++|||.++ ++.+. +|++.+++.+...... .....+...++++.++++++.+. .++++||++|+..++..++
T Consensus 49 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~ 128 (452)
T 3n5m_A 49 KRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIAR 128 (452)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHH
Confidence 357899887 44443 4888888877543321 12345677899999999987543 6788999999999999887
Q ss_pred hh-------cCCeEEecCCCcceeeccccccccCCc------------cceeeecCCCCC--C-C---------HHHHHH
Q 018243 75 ET-------RGSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGT--M-D---------IDLIEA 123 (359)
Q Consensus 75 ~~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~--~-~---------~~~l~~ 123 (359)
.. ++++|++.+++|..... ......+. ....++.+.... . | +++|++
T Consensus 129 ~~~~~~g~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 206 (452)
T 3n5m_A 129 QYYAQKGEPHRYKFMSRYRGYHGNTM--ATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDR 206 (452)
T ss_dssp HHHHTTTCTTCCEEEEETTCCCCSSH--HHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCcCCCCH--HHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHH
Confidence 32 56789998888765432 11222221 122222211111 1 2 789999
Q ss_pred HhcCCCCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccE
Q 018243 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADS 200 (359)
Q Consensus 124 ~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~ 200 (359)
.+++. +.+++++|+++++.+| ||..+ +.+++++|+++|++||+++|+||+|... ...+.. ........|+
T Consensus 207 ~l~~~----~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~--g~~g~~~~~~~~~~~~di 279 (452)
T 3n5m_A 207 VMTWE----LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGF--GRTGKAFGFMNYDVKPDI 279 (452)
T ss_dssp HHHHH----CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT--TTTSSSSGGGGTTCCCSE
T ss_pred HHHhc----CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCC--CcccccchhhhcCCCCCE
Confidence 88710 0146888888666477 99765 7788999999999999999999997532 222221 1122224555
Q ss_pred EEEeccccCCCc-ee-eEEecCHHHHHHHHH---HHH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHH
Q 018243 201 ASVCLSKGLGAP-VG-SVIVGSKEFIKKARR---LRK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEG 273 (359)
Q Consensus 201 ~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~ 273 (359)
+ +++|.++++ .. |++++++++++.+.. ... ..+.++..+++.++++..+++...+ ...++..++.+++++.
T Consensus 280 ~--t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 357 (452)
T 3n5m_A 280 I--TMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQ 357 (452)
T ss_dssp E--EECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred E--eecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5 567888653 33 778889998887632 111 2345566677777888877764322 2455566666666666
Q ss_pred Hhc----CCCceEecCCccceEEEEEeccch-------HHHHHHHHHHHHhcCceeccCC------CcEEEEEeCCCCCH
Q 018243 274 LNQ----LKGLRVDVDAVETNIVYFEITEDS-------KLYAACLLKKLEEHGVLVMPES------STRVRIVVHHQISA 336 (359)
Q Consensus 274 l~~----~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~------~~~lRi~~~~~~~~ 336 (359)
|++ .|.+... +..+.++++.+.... .....++.+.|.++||.+.+++ .+++||+++..+++
T Consensus 358 L~~~~~~~~~~~~~--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~ 435 (452)
T 3n5m_A 358 LKEEIGEHPLVGDI--RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISS 435 (452)
T ss_dssp HHHHHTTCTTEEEE--EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCH
T ss_pred HHHHHhcCCCeEEE--EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCH
Confidence 554 4444433 346666676663210 1234578889999999998876 58899998889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQKIYAG 352 (359)
Q Consensus 337 ~~i~~~~~~l~~~~~~ 352 (359)
+++++++++|++++++
T Consensus 436 e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 436 EEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=221.20 Aligned_cols=341 Identities=16% Similarity=0.109 Sum_probs=229.4
Q ss_pred cccccccCC---C-CCChHHHHHHHHHcCCCCCC---c-cCCChHHHHHHHHHHHHhC--CCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSD---T-VTKPTEAMRAAMASAEVDDD---V-LMHDPTAFRLETEMAKVMG--KEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~---~-~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++ + ....+|++.+++.+...... . ....+...++.+.++++++ .+..++++||++|+..++..
T Consensus 54 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~ 133 (476)
T 3i5t_A 54 RRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRF 133 (476)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHH
Confidence 357899876 2 22345888888876443211 1 2346778899999999985 45568999999999999999
Q ss_pred hhhh-------cCCeEEecCCCcceeeccccccccCCcc------------ceeeecCC--CC-CCC--------HHHHH
Q 018243 73 HCET-------RGSEVILGDNSHIHIYENGGISTIGGVH------------PRTVKNNQ--DG-TMD--------IDLIE 122 (359)
Q Consensus 73 ~~~~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~--~~-~~~--------~~~l~ 122 (359)
++.. .+++|++.+++|..... + .....+.. +..++.+. +. ..+ +++|+
T Consensus 134 a~~~~~~~g~~~~~~vi~~~~~yHg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le 211 (476)
T 3i5t_A 134 SEFYNNVLGRPQKKRIIVRYDGYHGSTA-L-TAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFE 211 (476)
T ss_dssp HHHHHHHTTCTTCCEEEEETTCCCCSSH-H-HHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcCcCCh-h-hccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHH
Confidence 8742 25678888887655432 1 12222211 12222111 11 112 77888
Q ss_pred HHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhH-hhhcCc
Q 018243 123 AAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVR-RLVQAA 198 (359)
Q Consensus 123 ~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~-~~~~~~ 198 (359)
+.+++.. ..++++|+++++++ ++|. +++.+++++|+++|++||+++|+||+|... +..|. ... .+...+
T Consensus 212 ~~i~~~~----~~~~aavi~ep~~~-~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~--gr~G~~~~~~~~~~v~p 284 (476)
T 3i5t_A 212 DRIESLG----PDTIAAFLAEPILA-SGGVIIPPAGYHARFKAICEKHDILYISDEVVTGF--GRCGEWFASEKVFGVVP 284 (476)
T ss_dssp HHHHHHC----GGGEEEEEECSSBT-TTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTSSSCHHHHTTCCCC
T ss_pred HHHHhcC----CCCEEEEEECCccC-CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCC--ccccCceeeecccCCCc
Confidence 8886310 03678888877655 6775 778899999999999999999999997532 22232 122 222245
Q ss_pred cEEEEeccccCCCc-ee-eEEecCHHHHHHHHHHH-----HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHH
Q 018243 199 DSASVCLSKGLGAP-VG-SVIVGSKEFIKKARRLR-----KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLL 270 (359)
Q Consensus 199 d~~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l 270 (359)
|++ +++|.++++ .. |++++++++++.+.... ...+.++..+++.++++..+++...+ +.+++..++.+++
T Consensus 285 di~--t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l 362 (476)
T 3i5t_A 285 DII--TFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYF 362 (476)
T ss_dssp SEE--EECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred chh--hhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 665 556888653 22 67888999988865321 13455666778888888888865432 3566777888888
Q ss_pred HHHHhcC---CCceEecCCccceEEEEEeccchH---------HHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHH
Q 018243 271 AEGLNQL---KGLRVDVDAVETNIVYFEITEDSK---------LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAND 338 (359)
Q Consensus 271 ~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~ 338 (359)
++.|+++ |.+... +..+.++++.+..... .....+.+.|.++||.+.+.+ +++||+++..+++++
T Consensus 363 ~~~L~~l~~~~~v~~v--~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~ 439 (476)
T 3i5t_A 363 AAALASLRDLPGVAET--RSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQ 439 (476)
T ss_dssp HHHHHTTTTSTTEEEE--EEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHH
T ss_pred HHHHHHHhcCCCeEEE--EecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHH
Confidence 8888765 333332 3467777777764210 125678889989999998876 899999888999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 018243 339 VHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 339 i~~~~~~l~~~~~~~~~~~ 357 (359)
+++++++|+++++++.++.
T Consensus 440 i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 440 IDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=224.48 Aligned_cols=324 Identities=17% Similarity=0.152 Sum_probs=223.8
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCC---Ch----HHHHHHHHHHHHhCCCCeE-EcCCchHHHHHHHHHhh--
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMH---DP----TAFRLETEMAKVMGKEAGL-FVPSGTMGNLISVLVHC-- 74 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~----~~~~l~~~la~~~~~~~~~-~~~~gt~a~~~~l~~~~-- 74 (359)
++.|. ..+....|.+.+++.+.......|.. ++ ...++++.+++++|.+..+ ++++|++++..++..+.
T Consensus 68 ~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~ 146 (474)
T 1wyu_B 68 FYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAY 146 (474)
T ss_dssp CCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHH
T ss_pred ccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHH
Confidence 34455 33333347777777664333223332 22 3567778888889988765 55778888888776653
Q ss_pred -hhcCC-----eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 75 -ETRGS-----EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 75 -~~~g~-----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
.++|| +|+++.++|.+... .+...|++++.++.++++.+|+++|++.++ +++++|++++ +|
T Consensus 147 ~~~~Gd~~~r~~Vlv~~~~h~~~~~---~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~--------~~t~~v~~~~-pn- 213 (474)
T 1wyu_B 147 HEDRGEGRTRRVVLVPDSAHGSNPA---TASMAGYQVREIPSGPEGEVDLEALKRELG--------PHVAALMLTN-PN- 213 (474)
T ss_dssp HHHTTCTTTCCEEEEETTSCTHHHH---HHHHTTCEEEEECBCTTSSBCHHHHHHHCS--------TTEEEEEECS-SC-
T ss_pred HHhcCCccCCCEEEEeCCcChhhHH---HHHHCCCEEEEecCCCCCCcCHHHHHHhhC--------CCceEEEEEC-CC-
Confidence 24776 89999999987664 367789999999888889999999999998 6789999966 44
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCce-----e-eEEecCHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV-----G-SVIVGSKE 222 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~-----g-g~~~~~~~ 222 (359)
|+|.+. +++++|.++|++||+++|+|++|..+... ......+ ++|++++|+||+|++|. + |+++++++
T Consensus 214 ~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~~~~~--g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~ 287 (474)
T 1wyu_B 214 TLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH 287 (474)
T ss_dssp TTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECGG
T ss_pred CCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCCcccC--CCcEEEEeCccccccCCCCCCCCeEEEEEcHH
Confidence 899872 46999999999999999999998654432 1222333 68999999999998763 3 88888888
Q ss_pred HHHHHHH-HH-----H------------hhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 223 FIKKARR-LR-----K------------TLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 223 ~~~~~~~-~~-----~------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
+++.+.. +. . .... ...+...+.+++..+. +.+++..++..++++++.+.|++. |+
T Consensus 288 l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~ 365 (474)
T 1wyu_B 288 LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS-FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GY 365 (474)
T ss_dssp GGGGCCSCEEEECSSCEEEECCCTTCCCCSSS-TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHhCCCCeeeccCCeeEecccCcccCccccc-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence 7665431 00 0 0000 1122333444444443 334445777888999999999998 88
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec----c-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM----P-ESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~----~-~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++..++.....+++.++ .+.+..++.++|.++||.+. + ...+++|++++..++++++++++++|++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 366 RVPYDGPSMHEFVAQPP--EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp BCSSCSSCCSCEEEBCS--TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EecCCCCcceEEEEEcC--CCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 76322212222455552 22467899999988899752 1 12578999998778999999999999988764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-28 Score=218.95 Aligned_cols=330 Identities=15% Similarity=0.118 Sum_probs=222.2
Q ss_pred ccccccCCCC---C-ChHHHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhh-h
Q 018243 4 RTVDLRSDTV---T-KPTEAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCE-T 76 (359)
Q Consensus 4 ~~id~~~~~~---~-~~~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~-~ 76 (359)
+++||.++.. . ..+|++.+++.+...... .....+...++++.++++++ .+..++++||++|+..++..++. .
T Consensus 56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~ 135 (434)
T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT 135 (434)
T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh
Confidence 5789988642 2 345888888876543222 22346778899999999985 44568889999999999998764 2
Q ss_pred cCCeEEecCCCcceeeccccccccCCc-------------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGV-------------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
++++|++.+++|..... ......|. .++.++.+ |+++|++.++++. +++
T Consensus 136 ~~~~vi~~~~~yhg~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-----~~~ 203 (434)
T 3l44_A 136 GRTKIMKFAGCYHGHSD--LVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWG-----HEV 203 (434)
T ss_dssp CCCEEEEETTCCCCSSG--GGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG-----GGE
T ss_pred CCCEEEEEcCccCCCcH--HHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCC-----CCE
Confidence 56789998888766443 11222232 12222222 8999999987421 357
Q ss_pred eEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCcee
Q 018243 138 RLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPVG 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~g 214 (359)
++|+++++ ++++|... +.+++++|.++|++||+++|+||+|... ..+.. ...+....|++ ++||.++++..
T Consensus 204 ~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~---~~g~~~~~~~~~~~~di~--t~sK~~~~G~~ 277 (434)
T 3l44_A 204 AAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF---RFMYGGAQDLLGVTPDLT--ALGKVIGGGLP 277 (434)
T ss_dssp EEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT---TSSSSCHHHHHTCCCSEE--EEEGGGGTTSS
T ss_pred EEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce---eccccHHHHHcCCCCCee--ehhhhhcCCcC
Confidence 78888554 45677765 7799999999999999999999998532 22221 22222245654 66788865433
Q ss_pred -eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhc----CCCceEecCCc
Q 018243 215 -SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQ----LKGLRVDVDAV 287 (359)
Q Consensus 215 -g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~ 287 (359)
|++++++++++.+..... ..+.++..+++.++++..+++... ++..++..++.+++++.|++ .+..... +.
T Consensus 278 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~ 355 (434)
T 3l44_A 278 IGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITL--NR 355 (434)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE--EE
T ss_pred eeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE--Ee
Confidence 677889998877543211 234455667777777777776432 23555666667777777665 3222222 34
Q ss_pred cceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 288 ETNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 288 ~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+.++++.+... ......++.+.|.++||.+.+++...+|+++ ..+++++++++++|+++++++.+
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~~--~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 356 LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTT--EHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCT--TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEec--ccCHHHHHHHHHHHHHHHHHHHh
Confidence 677777776321 1234578889999999999998888888864 79999999999999999988765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=217.94 Aligned_cols=295 Identities=17% Similarity=0.109 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCC--ccceeeecCCC-
Q 018243 38 PTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGG--VHPRTVKNNQD- 113 (359)
Q Consensus 38 ~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~~- 113 (359)
+...++++.+++++|.+.. ++++|||+|+..++.. + .+||+|+++++.|++... ..++...| .+++.++.+.+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~-~~gd~vi~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~g 111 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-L-TIDEDCLIIRNGWFSYRW-TQILEKGKFAKSSTVLTAERTE 111 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-H-CTTCEEEEEECSHHHHHH-HHHHHHHCCSSEEEEEECEESS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-C-CCCCeEEEEeCCchhHHH-HHHHHHhCCCCceEEEeccccc
Confidence 3557888889999998765 4567899999887744 4 489999999998876432 12344444 35566654321
Q ss_pred --------CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhh
Q 018243 114 --------GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185 (359)
Q Consensus 114 --------~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~ 185 (359)
+.+|++++++.+++ +++++|++.+ .+|+||.++|.+++++|.++|++||+++|+|++++ |..
T Consensus 112 ~~~~~~~~~~~d~~~l~~~i~~-------~~~~~v~~~~-~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~- 181 (379)
T 3ke3_A 112 DTEAPKPFAPVDIETAVAKIKE-------DKSAIVYAPH-VETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV- 181 (379)
T ss_dssp CCSSCCCEECCCHHHHHHHHHH-------HTCSEEEEES-EETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC-
T ss_pred cccccCCCCCCCHHHHHHHHhh-------cCCcEEEEEe-ecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc-
Confidence 25799999999963 4678888844 45599999999999999999999999999999986 432
Q ss_pred hcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH----------------h-hC---CCcchhHHH
Q 018243 186 ALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK----------------T-LG---GGMRQVGVL 244 (359)
Q Consensus 186 ~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~----------------~-~~---~~~~~~~~~ 244 (359)
......+ ++|++++|++|++++|.| |+++.++++.+.+..... . .+ .....+...
T Consensus 182 --~~~~~~~--~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~ 257 (379)
T 3ke3_A 182 --WLDMKEL--GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDS 257 (379)
T ss_dssp --CCCHHHH--TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHH
T ss_pred --ccccccc--CCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHH
Confidence 2223333 789999999999988776 899999998877643110 0 01 101122333
Q ss_pred HHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc-cceEEE-EEeccchHHHHHHHHHHHHhcCcee
Q 018243 245 CAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV-ETNIVY-FEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 245 ~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
.++...+++ ...+...++..++++++++.|+++ |+++..++. .++.+. +..+. .. ..+.+.|.++||.+
T Consensus 258 ~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~L~~~Gi~v 332 (379)
T 3ke3_A 258 LRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER---DD-MHKGSAFAEAGLQI 332 (379)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC---HH-HHSSHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC---cc-hHHHHHHHHCCeEE
Confidence 333334442 224456777888999999999998 888754321 244333 33332 12 22367788899998
Q ss_pred ccCC---------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 319 MPES---------STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 319 ~~~~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++. ...+|++++..++++|+++++++|+++++++.
T Consensus 333 ~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 333 AAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp EECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred eCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 6653 57899999888999999999999999998875
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-28 Score=218.67 Aligned_cols=331 Identities=17% Similarity=0.150 Sum_probs=223.0
Q ss_pred ccccccCCC---C-CChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHhh-hh
Q 018243 4 RTVDLRSDT---V-TKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVHC-ET 76 (359)
Q Consensus 4 ~~id~~~~~---~-~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~~-~~ 76 (359)
.+|||.++. + ..++|.+.+++.+.......++ ..+...++++.+++++ +.+..++++||++|+..++..+. ..
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~ 136 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT 136 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 568998763 3 3356888888877543322222 4567789999999999 66667899999999999998742 12
Q ss_pred cCCeEEecCCCcceeecccccc------------ccCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 77 RGSEVILGDNSHIHIYENGGIS------------TIGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~------------~~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
++++|++.+++|..... +... ...|+ +++.++.+ |+++|++.+++.. ++++
T Consensus 137 ~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-----~~~~ 205 (434)
T 2epj_A 137 GRDLILKFDGCYHGSHD-AVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYG-----DRIA 205 (434)
T ss_dssp CCCEEEEEETCCCCSSG-GGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG-----GGEE
T ss_pred CCCeEEEEcCCcCCCCH-HHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCC-----CCEE
Confidence 56788888877655332 1110 11232 23444433 8999999997310 2678
Q ss_pred EEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCce-e
Q 018243 139 LICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPV-G 214 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~-g 214 (359)
+|++++ .+++||.+. +.+++++|.++|++||+++|+||+|. +.. .+.. ...+...+|++ |++|.++++. .
T Consensus 206 ~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~--~g~~~~~~~~~~~~di~--s~sK~l~~G~~~ 279 (434)
T 2epj_A 206 GVIVEP-VIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFR--LGLEGAQGYFNIEGDII--VLGKIIGGGFPV 279 (434)
T ss_dssp EEEECS-SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTT--SSTTHHHHHHTCCCSEE--EEEGGGGTTSSC
T ss_pred EEEEeC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-cee--CCcchhhHHhCCCCCee--eecchhcCCcce
Confidence 888855 445799866 68999999999999999999999986 222 1221 11222246654 7779997632 3
Q ss_pred eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC---CceEecCCccc
Q 018243 215 SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK---GLRVDVDAVET 289 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~~~ 289 (359)
|++++++++++.+..... ..+.++..+++.++++..+++...+ +..++..++.+++++.|+++. ++.... +..+
T Consensus 280 G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g 358 (434)
T 2epj_A 280 GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTI-NRVE 358 (434)
T ss_dssp EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE-EEET
T ss_pred eeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEee
Confidence 778888888776543111 2334445566777777777754432 355667777888888887641 332211 2467
Q ss_pred eEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 290 ~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+++++.++.. ......++.+.|.++||.+.+++...+|++ ..++++++++++++|+++++++.
T Consensus 359 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 359 SMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTG--LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp TEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECC--TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcEEEe--ccCCHHHHHHHHHHHHHHHHHHh
Confidence 7888888641 123567899999999999988876656655 47999999999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=220.07 Aligned_cols=331 Identities=14% Similarity=0.124 Sum_probs=222.9
Q ss_pred ccccccCCC----CCChHHHHH-H-HHHc---CCCCCCcc---CCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHHH
Q 018243 4 RTVDLRSDT----VTKPTEAMR-A-AMAS---AEVDDDVL---MHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNLI 68 (359)
Q Consensus 4 ~~id~~~~~----~~~~~~~~~-~-a~~~---~~~~~~~~---~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~ 68 (359)
.++||.++. ....+|.+. + ++.+ .......+ ...+...++++.++++++ .+..++++||++|+..
T Consensus 55 ~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~ 134 (449)
T 2cjg_A 55 RYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVEN 134 (449)
T ss_dssp EEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH
T ss_pred EEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH
Confidence 468886653 223468888 7 7776 43222111 245667899999999985 3456888999999999
Q ss_pred HHHHhhh--h-c----------CCeEEecCCCcceeeccccccccCCc-------------cceeeecCC--CC------
Q 018243 69 SVLVHCE--T-R----------GSEVILGDNSHIHIYENGGISTIGGV-------------HPRTVKNNQ--DG------ 114 (359)
Q Consensus 69 ~l~~~~~--~-~----------g~~vl~~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~--~~------ 114 (359)
++..+.. + + +++|++.+++|.+... ......+. .++.++.++ ..
T Consensus 135 aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 212 (449)
T 2cjg_A 135 ALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSG--YTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAA 212 (449)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSST--TGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHH
T ss_pred HHHHHHHHhcccccccccccCCCCEEEEECCCcCCccc--chhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccch
Confidence 9986541 1 2 7899999987765443 11222221 334444433 11
Q ss_pred --CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc-eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--
Q 018243 115 --TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG-RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV-- 189 (359)
Q Consensus 115 --~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-- 189 (359)
..++++|++.+++.. +++++|+++ +.+|||| ..++.+++++|+++|++||+++|+||+|.. +...+.
T Consensus 213 ~~~~~~~~le~~i~~~~-----~~~~~vi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~ 284 (449)
T 2cjg_A 213 LEAEALRQARAAFETRP-----HDIACFVAE-PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTG--CGLTGTAW 284 (449)
T ss_dssp HHHHHHHHHHHHHHHST-----TTEEEEEEC-SEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSS
T ss_pred hhHHHHHHHHHHHHhcC-----CceEEEEEe-CcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccC--CCccCcce
Confidence 134566888886210 578888885 4666899 588899999999999999999999999862 222222
Q ss_pred hhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH--H-HHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR--L-RKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHK 265 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 265 (359)
....+....|++ +++|++ |.|+ +++++++.+.+.. . ....+.++..+++.++++..+++...+ +..++..+
T Consensus 285 ~~~~~~~~~di~--t~sK~l--~iG~-~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~ 359 (449)
T 2cjg_A 285 AYQQLDVAPDIV--AFGKKT--QVCG-VMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQ 359 (449)
T ss_dssp THHHHTCCCSEE--EECGGG--SSEE-EEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred eecccCCCceEE--EecCcc--cEEE-EEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 122222245655 677998 6655 5567777664221 1 112334555566777777777764332 35567778
Q ss_pred HHHHHHHHHhcC----CC-ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHH
Q 018243 266 KAKLLAEGLNQL----KG-LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVH 340 (359)
Q Consensus 266 ~~~~l~~~l~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~ 340 (359)
+.+++++.|+++ |. +... +..+.++++.++.. .+..++.+.|.++||.+.+++..++|++++..+++++++
T Consensus 360 ~~~~l~~~L~~l~~~~~~~~~~~--~~~g~~~~~~~~~~--~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~ 435 (449)
T 2cjg_A 360 HGKYLRARLDELAADFPAVVLDP--RGRGLMCAFSLPTT--ADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEID 435 (449)
T ss_dssp HHHHHHHHHHHHHHHSTTTSEEE--EEETTEEEEECSSH--HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCceeeE--eeccEEEEEEECCh--HHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHH
Confidence 888888888753 44 4433 23677888888652 356789999988999999988889999998899999999
Q ss_pred HHHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAGV 353 (359)
Q Consensus 341 ~~~~~l~~~~~~~ 353 (359)
+++++|+++++++
T Consensus 436 ~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 436 AAIAAVRSALPVV 448 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=215.43 Aligned_cols=282 Identities=19% Similarity=0.177 Sum_probs=201.7
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+..+++++|++|+..++. ++ ++||+|+++++.|.+.+... ..++..|++++.++.+
T Consensus 66 ~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 139 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS---- 139 (403)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT----
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC----
Confidence 57789999999999999888999999998888888 66 59999999999998755410 1245678898888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC-cEEEEecccccchhhhcCchhHhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG-LKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~-~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|++++++ ||||.+++ +++|.++|+++| +++|+|++|..+.. ..+ +
T Consensus 140 -d~~~l~~~i~--------~~t~~v~~~~p~-nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~---~~~---~ 200 (403)
T 3cog_A 140 -KIKLLEAAIT--------PETKLVWIETPT-NPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYF---QRP---L 200 (403)
T ss_dssp -SHHHHHHHCC--------TTEEEEEEESSC-TTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTT---CCT---T
T ss_pred -CHHHHHHhcC--------cCCeEEEEECCC-CCCCeeeC---HHHHHHHHHHcCCCEEEEECCCccccc---CCc---c
Confidence 8999999998 789999996654 59999987 899999999999 99999999765432 112 1
Q ss_pred hcCccEEEEeccccCCCce---eeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAPV---GSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLL 270 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~~---gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 270 (359)
..+.|+++.|+||+++++. +|++++ ++++.+.++.....++.+. ++..++++..+++.... +.++..+++..+
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~--~~~~~~~~~~~l~~l~~-r~~~~~~n~~~l 277 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP--SPIDCYLCNRGLKTLHV-RMEKHFKNGMAV 277 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCC--CHHHHHHHHhhhhHHHH-HHHHHHHHHHHH
Confidence 2378999999999998765 488887 5888888877666666544 44455555566654333 556666777777
Q ss_pred HHHHhcCC--------------CceEecC--CccceEEEEEeccchHHHHHHHHHHHHhcCceec---cC----------
Q 018243 271 AEGLNQLK--------------GLRVDVD--AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM---PE---------- 321 (359)
Q Consensus 271 ~~~l~~~~--------------g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---~~---------- 321 (359)
.+.|++.+ ++++..+ ...++++.+.++.. .+...+.|.+.||.+. .+
T Consensus 278 ~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~----~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~ 353 (403)
T 3cog_A 278 AQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT----LQHAEIFLKNLKLFTLAESLGGFESLAELPA 353 (403)
T ss_dssp HHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----HHHHHHHHHHCSSSEECSCCSSSSCEEECTT
T ss_pred HHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----HHHHHHHHHhCCcceEccCCCCcceeeeccc
Confidence 77776543 3332111 12377777787652 2345556677777431 11
Q ss_pred -----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 -----------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 -----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..+.+|++++...++++++.+.++|++++
T Consensus 354 ~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 354 IMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp TTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred ccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 14689999986555566666665555443
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=216.98 Aligned_cols=309 Identities=19% Similarity=0.269 Sum_probs=208.0
Q ss_pred ccCCChHH----HHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHhhh-------hcCC------eEEecCCCcceeec
Q 018243 33 VLMHDPTA----FRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVHCE-------TRGS------EVILGDNSHIHIYE 93 (359)
Q Consensus 33 ~~~~~~~~----~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~~~-------~~g~------~vl~~~~~~~~~~~ 93 (359)
.|..++.. .++++.+++++|.+ .+++++|||+|+..++..+.. .+|+ .|+++..+|++..+
T Consensus 139 ~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~ 218 (515)
T 2jis_A 139 TYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK 218 (515)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred chhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH
Confidence 45556654 45556688999986 358899999999999988752 2464 78999999998775
Q ss_pred cccccccCCc---cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC
Q 018243 94 NGGISTIGGV---HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170 (359)
Q Consensus 94 ~~~~~~~~g~---~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~ 170 (359)
+ +...|. +++.++.++++.+|+++|++.+++.... ..++++|++++ ++|+||.+.| +++|.++|++||
T Consensus 219 -~--~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~--g~~~~~Vv~~~-~~n~tG~i~~---l~~I~~la~~~g 289 (515)
T 2jis_A 219 -G--AAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAE--GAVPFLVSATS-GTTVLGAFDP---LEAIADVCQRHG 289 (515)
T ss_dssp -H--HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHT--TCEEEEEEEEB-SCTTTCCBCC---HHHHHHHHHHHT
T ss_pred -H--HHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhC--CCCcEEEEEeC-CCCCCCCccC---HHHHHHHHHHcC
Confidence 2 555566 7888888888999999999999731000 02588888844 5569999866 899999999999
Q ss_pred cEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCcee-eEEecCHH--HHHHHHH-HHHhh-C--------
Q 018243 171 LKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPVG-SVIVGSKE--FIKKARR-LRKTL-G-------- 235 (359)
Q Consensus 171 ~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~--~~~~~~~-~~~~~-~-------- 235 (359)
+++|+|++|+.+........ ...+ .++|++++++||++++|.| |+++.+++ +.++... ...+. +
T Consensus 290 ~~l~vD~a~~~~~~~~~~~~~~~~g~-~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 368 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQTHRHLLDGI-QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVA 368 (515)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTG-GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGG
T ss_pred CeEEEehhhhhHHHhChhhHhhcCCC-ccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccccccc
Confidence 99999999876655322111 1111 3789999999999988876 77766544 6554210 01110 0
Q ss_pred --C-------CcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEe-ccc-----
Q 018243 236 --G-------GMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEI-TED----- 299 (359)
Q Consensus 236 --~-------~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~----- 299 (359)
. +.+...+..++++..+ ....++..++..++++++.+.|+++|++++..++ ....+.|.. +..
T Consensus 369 ~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~p~~~~~~~ 447 (515)
T 2jis_A 369 LDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRGKQ 447 (515)
T ss_dssp GCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC-SSSEEEEEECCGGGTTCT
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CeeEEEEEEeCccccccc
Confidence 0 0001122222333333 2334447778889999999999999999986544 344455544 210
Q ss_pred --hHHH------HHHHHHHHHhcCceecc-----CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHH
Q 018243 300 --SKLY------AACLLKKLEEHGVLVMP-----ESSTRVRIVV-HHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 300 --~~~~------~~~~~~~l~~~gi~~~~-----~~~~~lRi~~-~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.... ...+.+.|.+.|+.... +...++|+++ ++.++++|++++++.|++++++
T Consensus 448 ~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 448 ESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp TSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000 12367778788976532 2346899999 8889999999999999987754
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=217.32 Aligned_cols=340 Identities=14% Similarity=0.059 Sum_probs=221.7
Q ss_pred cccccccCC---CCCC-hHHHHHHHHHcCCCC----CC-ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVTK-PTEAMRAAMASAEVD----DD-VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~~-~~~~~~~a~~~~~~~----~~-~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ ++.+ .+|.+.+++.+.... .. ..+..+...++++.++++++. +..++++||++|+..++.
T Consensus 51 ~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~ 130 (460)
T 3gju_A 51 RKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIK 130 (460)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHH
Confidence 357899876 3333 348888887764322 11 123356778999999998854 456889999999999999
Q ss_pred Hhhh-------hcCCeEEecCCCcceeeccccccccCC------------ccceeeecCC-----CCCCC--------HH
Q 018243 72 VHCE-------TRGSEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQ-----DGTMD--------ID 119 (359)
Q Consensus 72 ~~~~-------~~g~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-----~~~~~--------~~ 119 (359)
.++. ..+++|++.+++|..... + .....+ ..+..++.+. +...+ ++
T Consensus 131 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 208 (460)
T 3gju_A 131 LIWYYNNVLGRPEKKKIISRWRGYHGSGV-M-TGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCAD 208 (460)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSH-H-HHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCCCH-H-HhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHH
Confidence 8874 146788888888755432 1 111111 1223333221 11223 57
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQ 196 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~ 196 (359)
+|++.+++.. .+++++|++++ .++++|. +++.+++++|+++|++||+++|+||+|... ...+. ....+..
T Consensus 209 ~le~~i~~~~----~~~~aaii~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~--gr~g~~~~~~~~~~ 281 (460)
T 3gju_A 209 KLEEMILAEG----PETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGF--GRLGTMFGSDHYGI 281 (460)
T ss_dssp HHHHHHHHHC----GGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTSSSCHHHHHTC
T ss_pred HHHHHHHhcC----CCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC--CcccccchHhhcCC
Confidence 8888886310 13678888866 4557776 667789999999999999999999997622 12221 1222222
Q ss_pred CccEEEEeccccCCCce-e-eEEecCHHHHHHHHHH----HH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHH
Q 018243 197 AADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRL----RK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAK 268 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 268 (359)
..|++ +++|.++++. . |++++++++++.+... .. ..+.++..+++.++++..+++...+ +..++..++.+
T Consensus 282 ~pdi~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 359 (460)
T 3gju_A 282 KPDLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGA 359 (460)
T ss_dssp CCSEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCCee--eeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45655 5679997631 2 7788899998887532 11 2345566677777888877764322 23444444444
Q ss_pred H----HHHHHhcCCCceEecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCC-CcEEEEEeCCCC
Q 018243 269 L----LAEGLNQLKGLRVDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPES-STRVRIVVHHQI 334 (359)
Q Consensus 269 ~----l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~-~~~lRi~~~~~~ 334 (359)
+ |.+.+++.|.+... +..+.++++.+.... .....++.+.|.++||.+.+.+ ..++||+++...
T Consensus 360 ~~~~~l~~~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~ 437 (460)
T 3gju_A 360 YFRAELAKAVGGHKNVGEV--RGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCL 437 (460)
T ss_dssp HHHHHHHHHHTTSTTEEEE--EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTC
T ss_pred HHHHHHHHHHhcCCCeEEE--eeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCC
Confidence 4 44445555555443 346778888775421 1136688899999999998865 478999988899
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 018243 335 SANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 335 ~~~~i~~~~~~l~~~~~~~~~ 355 (359)
+++++++++++|+++++++.+
T Consensus 438 t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 438 TREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=217.57 Aligned_cols=318 Identities=12% Similarity=0.115 Sum_probs=215.0
Q ss_pred CccccccccCCCCCChHHHHHHHHHcCCCCC----------CccCC--ChHHHHHHHHHHHHhCCCC--e-EEc-CCchH
Q 018243 1 MVTRTVDLRSDTVTKPTEAMRAAMASAEVDD----------DVLMH--DPTAFRLETEMAKVMGKEA--G-LFV-PSGTM 64 (359)
Q Consensus 1 ~~~~~id~~~~~~~~~~~~~~~a~~~~~~~~----------~~~~~--~~~~~~l~~~la~~~~~~~--~-~~~-~~gt~ 64 (359)
|+.+++.+..+ +..+++.+++++.+..... ..++. .+...++++.+++++|.+. . +++ +||++
T Consensus 1 ~~~~~~l~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~ 79 (362)
T 2c0r_A 1 MSERAYNFNAG-PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGAST 79 (362)
T ss_dssp -CCCCEECCSS-SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHH
T ss_pred CCcceeeccCC-CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchH
Confidence 45666666665 4566688999998765321 11111 1235788899999999874 3 444 67888
Q ss_pred HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCC--CCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 65 GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDG--TMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 65 a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~--~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++..++.+++ ++||+|+++.+.|++.+. ...++..| +++.++.+ .++ .+|.++++ ++ +++++|
T Consensus 80 a~~~~~~~l~-~~gd~vl~~~~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~--------~~t~~v 146 (362)
T 2c0r_A 80 QFAMIPMNFL-KEGQTANYVMTGSWASKA-LKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ--------DNAAYL 146 (362)
T ss_dssp HHHHHHHHHC-CTTCEEEEEECSHHHHHH-HHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC--------TTEEEE
T ss_pred HHHHHHHhcC-CCCCeEEEEecCcHhHHH-HHHHHHhC-CeEEEecccccccccCCCHHHcc--cC--------CCcCEE
Confidence 9999998887 599999988777665421 02355668 88888765 222 34665543 44 689999
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEec
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVG 219 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~ 219 (359)
++.++ +||||..++ ++++| +|+++|+|++|+.+... .. +. ..|+++.|+||++| |.| |+++.
T Consensus 147 ~~~~~-~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~---~~---~~-~~d~~~~s~~K~~g-~~G~G~l~~ 209 (362)
T 2c0r_A 147 HLTSN-ETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP---FD---LN-QFGLVYAGAQKNLG-PSGVTVVIV 209 (362)
T ss_dssp EEESE-ETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC---CC---GG-GCSEEEEETTTTTC-CSSCEEEEE
T ss_pred EEeCC-cCccceecc--ccccc------CCCEEEEEChhhccCCc---cc---hh-HCcEEEEecccccc-CcCcEEEEE
Confidence 99555 679999754 35554 89999999998765432 11 22 24888999999998 566 99998
Q ss_pred CHHHHHHHHHH------------HHhhCCCcchhHHHHHHHHHHHH---H--hHHHHhhhHHHHHHHHHHHHhcCCCc-e
Q 018243 220 SKEFIKKARRL------------RKTLGGGMRQVGVLCAAALVALQ---E--NVLVMLDGDHKKAKLLAEGLNQLKGL-R 281 (359)
Q Consensus 220 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~~l~~~l~~~~g~-~ 281 (359)
++++++.++.. .....++. +...+.++..+++ . ..+...++..++++++.+.|++++++ +
T Consensus 210 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 287 (362)
T 2c0r_A 210 REDLVAESPKHLPTMLRYDTYVKNNSLYNTP--PSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR 287 (362)
T ss_dssp EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCC--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE
T ss_pred cHHHHhhccccCchHHhHHHHhhccCcCCCc--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 88776554321 00111222 2233333444443 3 34557788889999999999998436 7
Q ss_pred EecCC--ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 282 VDVDA--VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 282 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+..++ ....++++.++. +.+..++.+.|.++||.+.++. .+++|++++..+++++++++++.|++++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 288 GCVDVDSRSDMNITFRLAS--EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp ESSCGGGBCSSEEEEECSC--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHcCCcEEEEEcCC--cchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 63221 134567777764 3578899999999999887653 3479999988889999999999999887654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=211.17 Aligned_cols=274 Identities=16% Similarity=0.100 Sum_probs=197.3
Q ss_pred HHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccc---cccCCccceeeecCCCCCCCH
Q 018243 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI---STIGGVHPRTVKNNQDGTMDI 118 (359)
Q Consensus 42 ~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~ 118 (359)
++++.+++++|.+..+++++|++|+..++.++. ++|++|+++.++|.+... .. ....|.+++.++. .|+
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~-----~d~ 73 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHA--LFEHQLRKFGVEVDFIDM-----AVP 73 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHH--HHHTHHHHTTCEEEEECT-----TST
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCcchHHH--HHHHHHHhcCCEEEEeCC-----CCH
Confidence 689999999999988999999999999999887 599999999999988654 22 2457888888865 388
Q ss_pred HHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH-cCcEEEEecccccchhhhcCchhHhhhcC
Q 018243 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK-HGLKLHIDGARIFNAAVALGVPVRRLVQA 197 (359)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~-~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 197 (359)
+++++.++ +++++|+++++ +||||.+++ +++|.++|++ +|+++|+|++|+.+... .+. ..+
T Consensus 74 ~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~---~~~---~~~ 135 (331)
T 1pff_A 74 GNIEKHLK--------PNTRIVYFETP-ANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL---DLG 135 (331)
T ss_dssp THHHHTCC--------TTEEEEEEESS-CTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG---GGT
T ss_pred HHHHHhhc--------CCCeEEEEECC-CCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC---Chh---hcC
Confidence 89999888 68899999665 559999987 8999999999 99999999998655432 122 236
Q ss_pred ccEEEEeccccCCCce---eeEEecCH-HHHHHHHHHHHh-hCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 018243 198 ADSASVCLSKGLGAPV---GSVIVGSK-EFIKKARRLRKT-LGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272 (359)
Q Consensus 198 ~d~~~~s~~K~~g~~~---gg~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 272 (359)
.|+++.|+||++++|. +|++++++ ++.+.++..... .+.+. ++..+.++..+++.... +.++..++.+.+.+
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 212 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII--SPHDAWLITRGTLTLDM-RVKRAAENAQKVAE 212 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCC--CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCC--CHHHHHHHHcCcchHHH-HHHHHHHHHHHHHH
Confidence 8999999999998764 57888988 888876654433 33233 33344444444443222 44445555555555
Q ss_pred HHhcC--------------CCceEecC--CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---------------
Q 018243 273 GLNQL--------------KGLRVDVD--AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE--------------- 321 (359)
Q Consensus 273 ~l~~~--------------~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~--------------- 321 (359)
.+++. |++++..+ ...++++.+.+. +.+++.+.|.++||.+...
T Consensus 213 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~ 287 (331)
T 1pff_A 213 FLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASM 287 (331)
T ss_dssp HHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHH
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----CHHHHHHHHHhCCCceeccCCCCcceeeecchhh
Confidence 55443 23332111 124667777775 2456778888999965221
Q ss_pred ---------------CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 322 ---------------SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 322 ---------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
..+.+|++++...++++++.++++|+++
T Consensus 288 ~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 288 THAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1478999999899999999999988754
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=220.26 Aligned_cols=294 Identities=18% Similarity=0.170 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeeec---CC
Q 018243 39 TAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN---NQ 112 (359)
Q Consensus 39 ~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~ 112 (359)
...++++.+++++|.+. .+++++|| .++..++.++.. .+++.|++++++|.+..+ . ++..|++++.++. ++
T Consensus 134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~-~--~~~~G~~~~~v~~~~~~~ 210 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK-A--VSFVGMNMRLVETVLDGD 210 (456)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH-H--HHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH-H--HHHcCCCceEEEEeccCC
Confidence 34668889999999976 57788888 566666766542 256678989999998665 2 6668989888765 56
Q ss_pred CCCCCHHHHHHHh-cCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh
Q 018243 113 DGTMDIDLIEAAI-RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV 191 (359)
Q Consensus 113 ~~~~~~~~l~~~l-~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 191 (359)
++.+|+++|++.+ +... ..++.+|++ +.++||||.+.| +++|.++|+++|+++|+|+||+....+......
T Consensus 211 ~~~~d~~~l~~~i~~~~~----~~~~~~vv~-~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~ 282 (456)
T 2z67_A 211 RVYVPVEDIENAIKKEIE----LGNRPCVLS-TLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 282 (456)
T ss_dssp EEECCHHHHHHHHHHHHH----TTCCEEEEE-ESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhh----CCCeEEEEE-eCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhhHHHH
Confidence 7889999999999 4100 035666666 556679999866 899999999999999999986543332111111
Q ss_pred HhhhcCccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHH
Q 018243 192 RRLVQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAK 268 (359)
Q Consensus 192 ~~~~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 268 (359)
..+..++|++++|+||++++|.| |+++. ++++.+.+. ....+...........+++..+ ....++..++..++++
T Consensus 283 ~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~--~~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~ 360 (456)
T 2z67_A 283 KAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEIS--LSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKK 360 (456)
T ss_dssp HHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH--TTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcC--cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11212789999999999877776 88888 677777652 1222322111222223333333 2334457778889999
Q ss_pred HHHHHHhcCC---CceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCc---eec------------cCCCcEEEEEe
Q 018243 269 LLAEGLNQLK---GLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGV---LVM------------PESSTRVRIVV 330 (359)
Q Consensus 269 ~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi---~~~------------~~~~~~lRi~~ 330 (359)
++.+.|++++ |+.+.. + . +++++.+..+. ...++.+.|.++|| .+. .....++|+++
T Consensus 361 ~l~~~L~~~~~~~g~~v~~-~-~-~~v~~~~~~~~--~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~ 435 (456)
T 2z67_A 361 LLDELLNDLSKKTGGKFLD-V-E-SPIASCISVNS--DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNA 435 (456)
T ss_dssp HHHHHHHHHHHHSSCCBCC-C-C-CSSEEEEECSS--CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEEC
T ss_pred HHHHHHHhcccccCCEecC-C-C-CeEEEEEeccc--HHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhh
Confidence 9999999886 766643 3 3 67777773211 14678888988875 343 22356899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 018243 331 HHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 331 ~~~~~~~~i~~~~~~l~~~~ 350 (359)
+..++++++++++++|++++
T Consensus 436 ~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 436 AIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CTTCCHHHHHHHHHHHHTC-
T ss_pred hcCCCHHHHHHHHHHHHHHh
Confidence 98899999999999998754
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=221.15 Aligned_cols=282 Identities=20% Similarity=0.227 Sum_probs=200.2
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.+...++++.+++++|.+..+++++|++|+..++. ++ ++||+|+++.+.|.+..... ......|.+++.++.+
T Consensus 132 ~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~---- 205 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT---- 205 (464)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT----
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC----
Confidence 56678999999999999888999999998877764 55 69999999999987764300 1256678888888765
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|+++|++.++ +++++|++++ ++||||.+++ +++|.++|++||+++|+|++|..+.. ... ..
T Consensus 206 -d~~~l~~~i~--------~~tk~v~l~~-p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~---~~~-~~-- 266 (464)
T 1ibj_A 206 -KLDEVAAAIG--------PQTKLVWLES-PTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRP-LE-- 266 (464)
T ss_dssp -SHHHHHHHCC--------SSEEEEEECS-SCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCG-GG--
T ss_pred -CHHHHHHHhc--------cCceEEEEeC-CCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccccc---CCh-hh--
Confidence 8999999998 7899999955 5559999986 89999999999999999999855322 111 12
Q ss_pred cCccEEEEeccccCCCcee---eEEecC-HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAPVG---SVIVGS-KEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.+.|+++.|+||+++++.| |+++++ +++.+.++......+.+. ++..++++..+++.... +.++..++...+.
T Consensus 267 ~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~--~~~~~~a~~~al~~~~~-r~~~~~~~~~~l~ 343 (464)
T 1ibj_A 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL--APFDCWLCLRGIKTMAL-RIEKQQENARKIA 343 (464)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCC--CHHHHHHHHhchhhHHH-HHHHHHHHHHHHH
Confidence 3689999999999986533 788877 588888877666556554 34445555555543222 3333333444444
Q ss_pred HHHhc--------------CCCceEecCC--ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-------------
Q 018243 272 EGLNQ--------------LKGLRVDVDA--VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES------------- 322 (359)
Q Consensus 272 ~~l~~--------------~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~------------- 322 (359)
+.|++ +|++++..+. ..++++++.+.. ......+.+.|...||.+..++
T Consensus 344 ~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~ 421 (464)
T 1ibj_A 344 MYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH 421 (464)
T ss_dssp HHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTT
T ss_pred HHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC--HHHHHHHHHhcCcceEeecCCCCceeeeccccccc
Confidence 44443 3455443221 236788888853 1234568888877777765442
Q ss_pred --------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 323 --------------STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 323 --------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+++|+++. . ++++++++.|++++++
T Consensus 422 ~~~~~~~~~~~g~~~~~iRlsvg--~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 422 ASIPAEVREARGLTEDLVRISAG--I--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp CSCCSSSSSSSSCCTTCEEEECC--S--SCHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHhcCCCcCeEEEEeC--C--CCHHHHHHHHHHHHhh
Confidence 357999996 3 8999999999998864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=220.06 Aligned_cols=337 Identities=14% Similarity=0.083 Sum_probs=225.2
Q ss_pred cccccccCC---CCC-ChHHHHHHHHHcCCCCCC-----ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVT-KPTEAMRAAMASAEVDDD-----VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~-~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ ++. ..+|.+.+++.+...... .....+...++++.++++++. +..++++||++|+..+++
T Consensus 55 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik 134 (472)
T 3hmu_A 55 EEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIR 134 (472)
T ss_dssp CEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHH
Confidence 357999886 333 345888888876443211 122356778999999999864 456889999999999999
Q ss_pred Hhhhh-------cCCeEEecCCCcceeeccccccccCCc-----------cceeeecCC-----CCCCC--------HHH
Q 018243 72 VHCET-------RGSEVILGDNSHIHIYENGGISTIGGV-----------HPRTVKNNQ-----DGTMD--------IDL 120 (359)
Q Consensus 72 ~~~~~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~-----~~~~~--------~~~ 120 (359)
.++.. .+++|++.+++|..... + .....+. .+..++.+. ++ .| +++
T Consensus 135 ~a~~~~~~~g~~~~~~ii~~~~~yHg~t~-~-~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~ 211 (472)
T 3hmu_A 135 MVRTYWQNKGQPEKTVIISRKNAYHGSTV-A-SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARE 211 (472)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSH-H-HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcCCCccH-H-hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHH
Confidence 98741 35678888887655432 1 1222221 122333221 11 23 778
Q ss_pred HHHHhcCCCCCccCCceeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcC
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQA 197 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~ 197 (359)
|++.+++.. .+++++|+++++++ ++|... +.+++++|+++|++||+++|+||+|.... ..+. ....+...
T Consensus 212 le~~i~~~~----~~~~aavi~epv~~-~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfg--r~G~~~a~~~~~v~ 284 (472)
T 3hmu_A 212 LEEAILELG----ENRVAAFIAEPVQG-AGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFG--RTGNWFGTQTMGIR 284 (472)
T ss_dssp HHHHHHHHC----GGGEEEEEECSSBS-TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT--TTSSSCHHHHHTCC
T ss_pred HHHHHHhcC----CCCEEEEEEcCccC-CCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCc--ccCccchhHHhCCC
Confidence 888886310 03678888866554 677755 78999999999999999999999985321 2221 12222235
Q ss_pred ccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHH-HHHHHHHHH
Q 018243 198 ADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDH-KKAKLLAEG 273 (359)
Q Consensus 198 ~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~l~~~ 273 (359)
+|++ +++|.++++. . |++++++++++.+.......+.++..+++.++++..+++...+ ..+++.. ++.+++++.
T Consensus 285 pdi~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~ 362 (472)
T 3hmu_A 285 PHIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEK 362 (472)
T ss_dssp CSEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHH
T ss_pred Ccee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666 4669887532 2 6777899998886321113455666677888888888864432 3555666 677777777
Q ss_pred HhcC---CCceEecCCccceEEEEEeccch----------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHH
Q 018243 274 LNQL---KGLRVDVDAVETNIVYFEITEDS----------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVH 340 (359)
Q Consensus 274 l~~~---~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~ 340 (359)
|+++ |.+... +..+.++.+.+..+. ......+.+.|.++||.+.+.+ +++||+++..+++++++
T Consensus 363 L~~l~~~~~v~~v--r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~ 439 (472)
T 3hmu_A 363 WEALTDHPLVGEA--KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEID 439 (472)
T ss_dssp HHGGGGSTTEEEE--EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHH
T ss_pred HHHHhcCCCeEEE--EecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHH
Confidence 7654 444433 346778777775421 1126688899999999998877 89999998899999999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAGVC 354 (359)
Q Consensus 341 ~~~~~l~~~~~~~~ 354 (359)
+++++|+++++++.
T Consensus 440 ~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 440 EMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=219.89 Aligned_cols=317 Identities=11% Similarity=0.112 Sum_probs=216.9
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC-----CCccCC---C----hHHHHHHHHHHHHhCCCC--e-EEcCCc-hHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD-----DDVLMH---D----PTAFRLETEMAKVMGKEA--G-LFVPSG-TMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~---~----~~~~~l~~~la~~~~~~~--~-~~~~~g-t~a~ 66 (359)
.++++|..+.. .+++.+++++.+.... ...|+. . +...++++.+++++|.+. . ++++|+ ++|+
T Consensus 2 ~~~~~~~~g~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 2 KQVFNFNAGPS-ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCEECCSSSC-CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CceEeecCCCc-CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 35677777655 5568899999876542 112211 2 246789999999999863 3 555666 7888
Q ss_pred HHHHHHhhh--hcCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHH-HhcCCCCCccCCceeEEEE
Q 018243 67 LISVLVHCE--TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEA-AIRDPKGEIVYPTTRLICL 142 (359)
Q Consensus 67 ~~~l~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~-~l~~~~~~~~~~~~~~v~i 142 (359)
..++..+.. ++++.|+++.++|.+.. .+...| +++.++.+. ++.+|++++++ .++ +++++|++
T Consensus 81 ~~~~~~l~~~~~~g~~vi~~~~~~~~~~----~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~--------~~~k~v~~ 147 (360)
T 1w23_A 81 TMLPMNLLTKGTIGNYVLTGSWSEKALK----EAKLLG-ETHIAASTKANSYQSIPDFSEFQLN--------ENDAYLHI 147 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHH----HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC--------TTEEEEEE
T ss_pred HHHHHHhcCCCCcccEEEecchhHHHHH----HHHHhC-CeEEeecccccCcCCccchHhhccC--------CCCCEEEE
Confidence 888888874 23566788887776522 255668 888887764 55578888888 776 78999999
Q ss_pred eccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCH
Q 018243 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSK 221 (359)
Q Consensus 143 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~ 221 (359)
++ ++||||.+++ ++.+ +||+++|+|++|+.+... .+.. ..|+++.|+||++| +.| |+++.++
T Consensus 148 ~~-~~nptG~~~~--~i~~------~~~~~li~D~a~~~~~~~---~~~~----~~di~~~s~sK~~~-~~G~G~~~~~~ 210 (360)
T 1w23_A 148 TS-NNTIYGTQYQ--NFPE------INHAPLIADMSSDILSRP---LKVN----QFGMIYAGAQKNLG-PSGVTVVIVKK 210 (360)
T ss_dssp ES-EETTTTEECS--SCCC------CCSSCEEEECTTTTTSSC---CCGG----GCSEEEEETTTTTS-CTTCEEEEEEH
T ss_pred eC-CCCCcceecc--cccc------cCCceEEEechhhcCCCC---cCcc----cCCEEEEEcccccC-CCCcEEEEEcH
Confidence 65 5669999987 3433 799999999998765432 1221 23788889999998 456 8888888
Q ss_pred HHHHHHHHHHHh---------hCCCcc-hhHHHHHHHHHHHH---H--hHHHHhhhHHHHHHHHHHHHhcCCCc-eEec-
Q 018243 222 EFIKKARRLRKT---------LGGGMR-QVGVLCAAALVALQ---E--NVLVMLDGDHKKAKLLAEGLNQLKGL-RVDV- 284 (359)
Q Consensus 222 ~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~~l~~~l~~~~g~-~~~~- 284 (359)
++++.++..... .+.... .+.....++..+++ . ..++.++++.++++++.+.|++++++ ....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 290 (360)
T 1w23_A 211 DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE 290 (360)
T ss_dssp HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC
T ss_pred HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC
Confidence 877654322100 011111 12222222333332 2 34557778889999999999998655 5421
Q ss_pred CCccce-EEEEEeccchHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 285 DAVETN-IVYFEITEDSKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+...++ ++++.++. ..+..++.++|.++||.+.++. .+++|++++..++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 291 KGSRSLMNVTFNLRN--EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp GGGBCSSEEEEECSS--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred chhccCcEEEEEcCC--CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 222334 88888865 2467789999999999997764 468999998888999999999999988764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=216.56 Aligned_cols=327 Identities=12% Similarity=0.080 Sum_probs=210.6
Q ss_pred cccccCCCC----CChH--HHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHh-CCC------CeEEcCCchHHHHHH
Q 018243 5 TVDLRSDTV----TKPT--EAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVM-GKE------AGLFVPSGTMGNLIS 69 (359)
Q Consensus 5 ~id~~~~~~----~~~~--~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~-~~~------~~~~~~~gt~a~~~~ 69 (359)
.|||.-+.+ ..|. |.|++|....... ...|.+..+..++++++++++ |.. ..+.+.+||.|+..+
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a 125 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLG 125 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHH
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHH
Confidence 577776532 2222 7777776554322 345888899999999999975 322 125577888888777
Q ss_pred HHHhh---hhcCCeEEecCCCcceeeccccccccCCcccee-ee--cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 70 VLVHC---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRT-VK--NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 70 l~~~~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~-v~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
+..+. ..+||+|++++|+|.+ |. .+.+..|.+.+. ++ .+.++.+|.+.+.+.+++.. ++++++++
T Consensus 126 ~~~l~~~~~~pgd~V~ip~P~w~~-y~--~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~-----~~~~vll~- 196 (420)
T 4h51_A 126 AKLLTRVFDAETTPIYLSDPTWPN-HY--GVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAP-----DGSVFILH- 196 (420)
T ss_dssp HHHHTTTSCTTTSCEEEEESCCTH-HH--HHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSC-----SSCEEEEE-
T ss_pred HHHHHHhcCCCCCEEEEecCCchh-HH--HHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccC-----CCcEEEEe-
Confidence 76654 2589999999999766 44 457778877543 32 23456678888888876421 45555555
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch-----hHhhh-cCccEE-EEeccccCCCcee--
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-----VRRLV-QAADSA-SVCLSKGLGAPVG-- 214 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-----~~~~~-~~~d~~-~~s~~K~~g~~~g-- 214 (359)
++++||||..++.+++++|.++|+++++++++|++|..... .+.. ..... ....++ +.|+||.|+.++.
T Consensus 197 ~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv 274 (420)
T 4h51_A 197 QCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYAS--GSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA 274 (420)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhcc--CCcccchHHHHhHHhhCceEEEEeccccccccccCce
Confidence 77888999999999999999999999999999999643222 2211 11111 122344 4599999987654
Q ss_pred eEEecCHHHHHH-------HHHHHHhhCCCcchhHHHHHHHHH---H----HHHhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 215 SVIVGSKEFIKK-------ARRLRKTLGGGMRQVGVLCAAALV---A----LQENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 215 g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~----l~~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
|++++.....+. +.........+.+..+...++... . ++..++..++++.++++.|.+.|+++ |.
T Consensus 275 G~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~-g~ 353 (420)
T 4h51_A 275 GTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL-QT 353 (420)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 776653222222 222222222222222222221111 1 12334456777888999999999987 42
Q ss_pred ----eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 281 ----RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
.... +..|.|.|..++. +.++.|+++||++++++ ||++. +++++++++++++|.++++++.+|
T Consensus 354 ~~~~~~i~-~q~GmF~~~gls~-------e~v~~L~e~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 354 PGSWEHVI-NQIGMFSFLGLSK-------AQCEYCQNHNIFITVSG----RANMA-GLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp SSCCTHHH-HCCSSEEECCCCH-------HHHHHHHHTTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCeec-CCCceEEecCcCH-------HHHHHHHhCCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHHHhhcC
Confidence 2222 3467777765543 34577899999998876 99987 689999999999999999988654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=219.79 Aligned_cols=337 Identities=13% Similarity=0.105 Sum_probs=218.3
Q ss_pred cccccccCC---CCC-ChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCC---CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVT-KPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGK---EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~-~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ ++. ..+|++.+++.+....... .+..+...++++.++++++. +..++++||++|+..++.
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk 140 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVK 140 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHH
Confidence 357899875 222 3358888888775433221 23456778999999999863 346899999999999998
Q ss_pred HhhhhcC-CeEEecCCCcceeeccccccccCC-------------ccceeeecCCCC-----CC--------CHHHHHHH
Q 018243 72 VHCETRG-SEVILGDNSHIHIYENGGISTIGG-------------VHPRTVKNNQDG-----TM--------DIDLIEAA 124 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~-----~~--------~~~~l~~~ 124 (359)
.++..+| ++|++..++|..... + .....+ ..+..++.+..+ .+ +++.+++.
T Consensus 141 ~a~~~~g~~~ii~~~~~yhG~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 218 (451)
T 3oks_A 141 IARSHTHKPAVVAFDHAYHGRTN-L-TMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITV 218 (451)
T ss_dssp HHHHHHCCCEEEEETTCCCCSSH-H-HHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEcCCcCCccH-H-HHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHH
Confidence 8874344 678888887654332 1 111111 123334332110 01 24444454
Q ss_pred hcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEE
Q 018243 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSAS 202 (359)
Q Consensus 125 l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~ 202 (359)
+++.. ...++++|++++..++.+....+.+++++|+++|++||+++|+||+|... ...+. ....+....|++
T Consensus 219 l~~~~---~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~--g~~g~~~~~~~~~~~pdi~- 292 (451)
T 3oks_A 219 IDKQI---GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF--ARTGAMFACEHEGIDPDLI- 292 (451)
T ss_dssp HHHHT---CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTSSSSGGGGGTCCCSEE-
T ss_pred HHhhc---CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC--CccccchhhhhcCCCCCee-
Confidence 44210 01467888887766543334556788999999999999999999997522 22222 122222245655
Q ss_pred EeccccCCCcee-eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhc----
Q 018243 203 VCLSKGLGAPVG-SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQ---- 276 (359)
Q Consensus 203 ~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~---- 276 (359)
+++|.++++.. |++++++++++.+... ..+.++..+++.++++..+++...+ +..++..++.+++++.|++
T Consensus 293 -t~sK~l~~G~~iG~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 369 (451)
T 3oks_A 293 -VTAKGIAGGLPLSAVTGRAEIMDSPHVS--GLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAE 369 (451)
T ss_dssp -EECGGGGTTSSCEEEEEEHHHHTCSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eehhhhhCCcceEEEEECHHHHhhhcCC--CcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 67799965333 6788898888776432 2455566677778888877764332 2455556666666666554
Q ss_pred CCCceEecCCccceEEEEEecc-----chHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVDAVETNIVYFEITE-----DSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 277 ~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.|.+... +..+.++++.+.. +......++.+.|.++||.+.+++. ..+|++++..++++++++++++|+++
T Consensus 370 ~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 447 (451)
T 3oks_A 370 DDRIGDV--RGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEV 447 (451)
T ss_dssp CTTEEEE--EEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEE--EEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444432 3467788887732 2234678899999999999988765 78999999899999999999999998
Q ss_pred HHH
Q 018243 350 YAG 352 (359)
Q Consensus 350 ~~~ 352 (359)
+++
T Consensus 448 l~~ 450 (451)
T 3oks_A 448 LRG 450 (451)
T ss_dssp HHC
T ss_pred Hhh
Confidence 864
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=214.92 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=219.0
Q ss_pred cccccccCC---CCC-ChHHHHHHHHHcCCCCC----C-ccCCChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD---TVT-KPTEAMRAAMASAEVDD----D-VLMHDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~---~~~-~~~~~~~~a~~~~~~~~----~-~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.+++||.++ ++. ..+|++.+++.+..... . .....+...++++.++++++. +..++++||++|+..++.
T Consensus 50 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~ 129 (459)
T 4a6r_A 50 NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIR 129 (459)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHH
Confidence 357899886 222 33488888887643221 1 123467778999999999864 456888999999999999
Q ss_pred Hhhhh-------cCCeEEecCCCcceeeccccccccCCc------------cceeeecCC-----CCCCC--------HH
Q 018243 72 VHCET-------RGSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQ-----DGTMD--------ID 119 (359)
Q Consensus 72 ~~~~~-------~g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~-----~~~~~--------~~ 119 (359)
.++.. ++++|++.+++|..... + .....+. .+..++.+. ++ +| ++
T Consensus 130 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~ 206 (459)
T 4a6r_A 130 MVRRYWDVQGKPEKKTLIGRWNGYHGSTI-G-GASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAAR 206 (459)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSH-H-HHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcCCccH-H-HHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHH
Confidence 98741 46789988888765432 1 1111111 122232211 11 34 78
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhhc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQ 196 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~ 196 (359)
+|++.+++.. ..++++|+++++++ ++|. +++.+++++|+++|++||+++|+||+|... ...+. .......
T Consensus 207 ~le~~i~~~~----~~~~~~vi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~ 279 (459)
T 4a6r_A 207 WLEEKILEIG----ADKVAAFVGEPIQG-AGGVIVPPATYWPEIERICRKYDVLLVADEVICGF--GRTGEWFGHQHFGF 279 (459)
T ss_dssp HHHHHHHHHC----GGGEEEEEECSSBT-TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT--TTTSSSSHHHHHTC
T ss_pred HHHHHHHHcC----CCCEEEEEECCccC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC--CcccccchHhhcCC
Confidence 8888886310 03577888866555 5555 558899999999999999999999997522 22231 1222223
Q ss_pred CccEEEEeccccCCCc-ee-eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHH-HHHHHHH
Q 018243 197 AADSASVCLSKGLGAP-VG-SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENVL-VMLDGDH-KKAKLLA 271 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~-~g-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~l~ 271 (359)
..|++ +++|.++++ .. |++++++++++.+..... ..+.++..+++.++++..+++...+ ...++.. ++.++++
T Consensus 280 ~pdi~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 280 QPDLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp CCSEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHH
T ss_pred CCCee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45655 566988653 22 678889999888762211 1222333456677777777764322 2344444 4555555
Q ss_pred HHH----hcCCCceEecCCccceEEEEEeccch---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHH
Q 018243 272 EGL----NQLKGLRVDVDAVETNIVYFEITEDS---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAND 338 (359)
Q Consensus 272 ~~l----~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~ 338 (359)
+.| .+.|.+... +..+.++++.+..+. .....++.+.|.++||.+.+++ .++||+++...++++
T Consensus 358 ~~l~~~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~ 434 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDV--RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAE 434 (459)
T ss_dssp HHHHHHHTTCTTEEEE--EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHH
T ss_pred HHHHHHHhcCCCeEEE--EEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHH
Confidence 554 445555443 346778777775421 1226788899999999998876 899999988999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018243 339 VHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 339 i~~~~~~l~~~~~~~~~ 355 (359)
+++++++|+++++++..
T Consensus 435 i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 435 VDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987753
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=208.31 Aligned_cols=282 Identities=22% Similarity=0.177 Sum_probs=208.3
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cc-cccCCccceeeecCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GI-STIGGVHPRTVKNNQDG 114 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~-~~~~g~~~~~v~~~~~~ 114 (359)
.|...++++.+++++|.+.+++++||++|+.. +..++ ++||+|+++++.|.+.+... .. ....|.+++.++.+
T Consensus 66 ~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 140 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT--- 140 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT---
T ss_pred CHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC---
Confidence 67789999999999999988999999888887 55555 69999999999998766511 11 23358888888765
Q ss_pred CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh
Q 018243 115 TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL 194 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 194 (359)
|++++++.++ +++++|+++++. ||||.+.+ +++|+++|++||+++|+|++|+.+.. . .++
T Consensus 141 --d~~~l~~~i~--------~~~~~v~~e~~~-np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~---~---~~~ 200 (400)
T 3nmy_A 141 --DPAAFKAAIR--------ADTKMVWIETPT-NPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPML---Q---RPL 200 (400)
T ss_dssp --SHHHHHHHCC--------TTEEEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHH---C---CGG
T ss_pred --CHHHHHHHhc--------cCCCEEEEECCC-CCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc---C---Chh
Confidence 8999999998 789999997655 59999987 89999999999999999999743221 1 122
Q ss_pred hcCccEEEEeccccCCCc---eee--EEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Q 018243 195 VQAADSASVCLSKGLGAP---VGS--VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL 269 (359)
Q Consensus 195 ~~~~d~~~~s~~K~~g~~---~gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (359)
..++|+++.|++|+++++ .|| ++..++++.+.++......+.+. ++..++++...++.... ++++..+++..
T Consensus 201 ~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~--~~~~a~~~l~~l~~l~~-r~~~~~~~a~~ 277 (400)
T 3nmy_A 201 SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQ--GPFDSFLALRGLKTLPL-RMRAHCENALA 277 (400)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHH
T ss_pred hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhHhHHHH-HHHHHHHHHHH
Confidence 237899999999999865 456 45568888888887777776655 45556666666665444 77888899999
Q ss_pred HHHHHhcCCCceE-ecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------------
Q 018243 270 LAEGLNQLKGLRV-DVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------ 321 (359)
Q Consensus 270 l~~~l~~~~g~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------ 321 (359)
+.+.|++.|.+.. ..+ ...+.++++.++. .......|.+.|+-.++.+..+
T Consensus 278 l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~-~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~ 356 (400)
T 3nmy_A 278 LAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG-GFDAAKRFCEKTELFTLAESLGGVESLVNHPAVM 356 (400)
T ss_dssp HHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-HHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTT
T ss_pred HHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC-cHHHHHHHHHcCCcceEecCCCCCcceeeCcccc
Confidence 9999999887753 222 2246788999975 2234667777775444333211
Q ss_pred ---------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 322 ---------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 322 ---------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+..+|+++.. |+.+++++.|+++++
T Consensus 357 ~~~~~~~~~~~~~gi~~~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 357 THASIPVARREQLGISDALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp TTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 24579999953 466667777777665
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=211.25 Aligned_cols=308 Identities=16% Similarity=0.121 Sum_probs=213.0
Q ss_pred cCCCCCChHHHHHHHHHcCCCCCCccC--CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCC
Q 018243 9 RSDTVTKPTEAMRAAMASAEVDDDVLM--HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86 (359)
Q Consensus 9 ~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~ 86 (359)
.++++..+..+....+.........|+ ..+...++++.+++++|.+.++++++|++|+..++..++ ++|++|+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-~~gd~vi~~~~ 105 (421)
T 2ctz_A 27 PTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-QAGDNIVSTPN 105 (421)
T ss_dssp CCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSC
T ss_pred ccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence 344555555333333222222233344 356789999999999999888999999999999999887 59999999999
Q ss_pred Ccceeeccccc---cccCCccceee-ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 87 SHIHIYENGGI---STIGGVHPRTV-KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 87 ~~~~~~~~~~~---~~~~g~~~~~v-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+|.+... .. ....|++++.+ +.+ |++++++.++ +++++|+++++. ||||.+.| +++|
T Consensus 106 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~--------~~~~~v~~~~~~-n~~G~~~~---l~~i 166 (421)
T 2ctz_A 106 LYGGTFN--QFKVTLKRLGIEVRFTSREE-----RPEEFLALTD--------EKTRAWWVESIG-NPALNIPD---LEAL 166 (421)
T ss_dssp CCHHHHH--HHHTHHHHTTCEEEECCTTC-----CHHHHHHHCC--------TTEEEEEEESSC-TTTCCCCC---HHHH
T ss_pred CchHHHH--HHHHHHHHcCCEEEEECCCC-----CHHHHHHhhc--------cCCeEEEEECCC-CCCCcccC---HHHH
Confidence 9988765 22 35678888888 654 8999999998 789999996655 59999988 8999
Q ss_pred HHHHHHcCcEEEEeccc-ccchhhhcCchhHhhhcCccEEEEeccccCCCce---eeEEecC--HHH----HHHHH----
Q 018243 163 GEIAKKHGLKLHIDGAR-IFNAAVALGVPVRRLVQAADSASVCLSKGLGAPV---GSVIVGS--KEF----IKKAR---- 228 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~-~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~---gg~~~~~--~~~----~~~~~---- 228 (359)
.++|+++|+++|+|++| +++. .+.. +..++|+++.|+||++++|. ||+++.+ +++ .+.+.
T Consensus 167 ~~~a~~~g~~livD~~~~~~g~---~~~~---~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~ 240 (421)
T 2ctz_A 167 AQAAREKGVALIVDNTFGMGGY---LLRP---LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP 240 (421)
T ss_dssp HHHHHHHTCEEEEECGGGGGGT---SCCG---GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBG
T ss_pred HHHHHHcCCEEEEECCcccccc---cCCc---cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccc
Confidence 99999999999999998 6552 1222 22368999999999998743 5666652 111 11111
Q ss_pred ------------------HH----HHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEec-C
Q 018243 229 ------------------RL----RKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV-D 285 (359)
Q Consensus 229 ------------------~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~ 285 (359)
.. ...++. ...+..++++..+++.... +.++..++++++.+.|++.|++.... +
T Consensus 241 g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~--~~~~~~a~~~~~~l~~l~~-r~~~~~~~a~~l~~~L~~~p~v~~v~~p 317 (421)
T 2ctz_A 241 GYHGLRLTEAFGELAFIVKARVDGLRDQGQ--ALGPFEAWVVLLGMETLSL-RAERHVENTLHLAHWLLEQPQVAWVNYP 317 (421)
T ss_dssp GGTTBCHHHHHGGGHHHHHHHHTHHHHHCC--CCCHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHhcCC--CCCHHHHHHHHcCcchHHH-HHHHHHHhHHHHHHHHHhCCCeeEEECC
Confidence 00 111232 2345555566666665444 66677789999999999998987642 2
Q ss_pred ----------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC---------------------------C
Q 018243 286 ----------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE---------------------------S 322 (359)
Q Consensus 286 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~---------------------------~ 322 (359)
...+.++.|.+.. .......+.+.|...++.+..+ .
T Consensus 318 ~~~~~~~~~~~~~~~~~~~g~ivsf~l~~-~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~ 396 (421)
T 2ctz_A 318 GLPHHPHHDRAQKYFKGKPGAVLTFGLKG-GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVS 396 (421)
T ss_dssp TSTTCTTHHHHHHHHTTCCCSEEEEEETT-HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHhccCCCceEEEEEeCC-CHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCC
Confidence 2356778888875 1234556666665444433211 1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 323 STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 323 ~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++.+|++++ .++++++++.|++++
T Consensus 397 ~~~vRlS~g----~e~~~~li~~l~~al 420 (421)
T 2ctz_A 397 PEMVRLSVG----LEHVEDLKAELKEAL 420 (421)
T ss_dssp TTEEEEECC----SSCHHHHHHHHHHHT
T ss_pred CCeEEEEeC----CCCHHHHHHHHHHHh
Confidence 468999985 358888888888765
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=211.09 Aligned_cols=315 Identities=10% Similarity=0.089 Sum_probs=209.0
Q ss_pred ccccccCCCCCChHHHHHHHHHcC---CCCCCccCC--ChHHHHHHHHHHHHhCCCC--e-EE-cCCchHHHHHHHHHhh
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASA---EVDDDVLMH--DPTAFRLETEMAKVMGKEA--G-LF-VPSGTMGNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~--~~~~~~l~~~la~~~~~~~--~-~~-~~~gt~a~~~~l~~~~ 74 (359)
..++|..+ +..+++.+++++.+. ..+...+.. .+...++++.+++++|.+. . ++ ++||++++..++.+++
T Consensus 40 ~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~ 118 (398)
T 2fyf_A 40 RDGRFGSG-PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI 118 (398)
T ss_dssp SSCBCCSS-SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC
T ss_pred CCccccCC-CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc
Confidence 34566554 345568899999873 211111111 2346789999999999863 3 55 7888999999999887
Q ss_pred hhcCCeEEecCCCcceeeccccccccC--CccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIG--GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
++| .+++..+.|..... ..+... |.+++.++.+.+...+. .++ +++++|++++ ++||||.
T Consensus 119 -~~g-v~~v~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~--------~~~~~v~~~~-~~nptG~ 180 (398)
T 2fyf_A 119 -DKR-SLHLTYGEFSAKFA--SAVSKNPFVGEPIIITSDPGSAPEP-----QTD--------PSVDVIAWAH-NETSTGV 180 (398)
T ss_dssp -SSC-EEEEECSHHHHHHH--HHHHHCTTSCCCEEEECCTTCCCCC-----CCC--------TTCSEEEEES-EETTTTE
T ss_pred -CCC-eEEEeCCHHHHHHH--HHHHHhCCCCceEEEecCCCCCCCc-----ccc--------CCCCEEEEeC-cCCCcce
Confidence 465 23344444422111 123333 77888887663222222 133 6789999865 5669999
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR 231 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~ 231 (359)
++|.+++.++ +|+++|+|++|+.+... .. + ...|+++.|+||++|++.| |+++.++++++.++...
T Consensus 181 ~~~~~~i~~~------~~~~vivD~a~~~~~~~---~~---~-~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 181 AVAVRRPEGS------DDALVVIDATSGAGGLP---VD---I-AETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp ECCCCCCTTC------C-CEEEEECTTTTTTSC---CC---G-GGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred ecchHHhhhh------cCCeEEEEeccccCCcc---cC---c-ccCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence 9997776665 89999999998665432 11 2 1478999999999998755 88889999888765432
Q ss_pred H-------hh-----------CCCcc-hhHHHHHHHHHHHH---Hh--HHHHhhhHHHHHHHHHHHHhcCCCceEec-CC
Q 018243 232 K-------TL-----------GGGMR-QVGVLCAAALVALQ---EN--VLVMLDGDHKKAKLLAEGLNQLKGLRVDV-DA 286 (359)
Q Consensus 232 ~-------~~-----------~~~~~-~~~~~~~~~~~~l~---~~--~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~ 286 (359)
. .. +.... .+.....++..+++ +. .+...++..++++++.+.|+++||+++.. .+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 327 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDP 327 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSG
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCCh
Confidence 1 00 11111 12222223333332 22 45567788889999999999988888753 12
Q ss_pred -ccce-EEEEEeccchHHHHHHHHHHHHhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 287 -VETN-IVYFEITEDSKLYAACLLKKLEEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 287 -~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..++ ++++.++. +.+..++.+.|.++||.+.++ +..++|++++..++++++++++++|++++++
T Consensus 328 ~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 328 GLRSQVVGTIDFVD--DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp GGBCSSEEEEEECT--TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred hhcCCcEEEEECCC--CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 2345 88888864 246789999998889999764 2468999998888999999999999988764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=208.40 Aligned_cols=277 Identities=16% Similarity=0.069 Sum_probs=201.8
Q ss_pred HHHHHHHHHcCCCCC------CccCC-ChHHHHHHHHHHHHhCCCCeEE---cCCchHHHHHHHHHhhhhcCCeEEecC-
Q 018243 17 TEAMRAAMASAEVDD------DVLMH-DPTAFRLETEMAKVMGKEAGLF---VPSGTMGNLISVLVHCETRGSEVILGD- 85 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~------~~~~~-~~~~~~l~~~la~~~~~~~~~~---~~~gt~a~~~~l~~~~~~~g~~vl~~~- 85 (359)
+.+++++|.+..... ..|.+ .+....+++.+++++|.+.+++ ++||++|+..++.+++ ++||+|++++
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-~~GD~Vl~~~~ 109 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL-RPDDELLYITG 109 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-CTTCEEEECSS
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 467888887754321 12332 3567899999999999998877 8999999999999988 5999999998
Q ss_pred CCcceeeccc-------cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc---ccCCCceecC
Q 018243 86 NSHIHIYENG-------GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT---HANCGGRCLS 155 (359)
Q Consensus 86 ~~~~~~~~~~-------~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~---~~~ptG~~~~ 155 (359)
+.|....... ...+..|++++.++.++++.+|++++++.++ +++++|+++++ ++||||.+.
T Consensus 110 ~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~--------~~tklV~i~~s~g~p~nptg~v~- 180 (409)
T 3jzl_A 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT--------PKTKMIGIQRSRGYADRPSFTIE- 180 (409)
T ss_dssp SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC--------TTEEEEEEECSCTTSSSCCCCHH-
T ss_pred CCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc--------CCCeEEEEECCCCCCCCCcCccc-
Confidence 8876654200 1255678899999887888899999999998 78999999773 455888764
Q ss_pred hhhHHHHHHHHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHH
Q 018243 156 VEYTDSVGEIAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 156 ~~~l~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~ 230 (359)
++++|+++|++ +|+++|+|++|+.+... .. +...++|+++.|+||++|+ +.||+++++++++++++..
T Consensus 181 --~l~~I~~la~~~~~~~~livD~a~~~~~~~---~~--p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~ 253 (409)
T 3jzl_A 181 --KIKEMIVFVKNINPEVIVFVDNCYGEFVEY---QE--PPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYR 253 (409)
T ss_dssp --HHHHHHHHHHHHCTTCEEEEECTTCTTTSS---CC--SGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHH
T ss_pred --cHHHHHHHHHhhCCCCEEEEeCCccccccc---CC--ccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHH
Confidence 58999999999 99999999996543321 11 1223789999999999976 4579999999999998764
Q ss_pred HHhhCC--CcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce-----EEEEEeccchHHH
Q 018243 231 RKTLGG--GMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN-----IVYFEITEDSKLY 303 (359)
Q Consensus 231 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~ 303 (359)
....+. ..........++..+++.... ++++..+++.++++.|+++ |+++. +. .+. ++.+.+.+ ...
T Consensus 254 ~~~~~~g~~~g~~~~~~~~~l~gl~~~~~-r~~~~~~~a~~la~~L~~~-g~~v~-p~-~~~~~~~~i~~i~l~~--~~~ 327 (409)
T 3jzl_A 254 LTTPGIGREAGASLYSLLEMYQGFFLAPH-VTAQAIKGARFTAAMLAEF-GVEAD-PV-WDAPRTDLIQSVSFHN--KEK 327 (409)
T ss_dssp HSCTTTGGGCCCCTTCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT-TCEEE-SC-TTSCCSSSCCEEECSC--HHH
T ss_pred hccccccccccccHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhC-CCccc-CC-CCCCCccEEEEEEeCC--HHH
Confidence 432111 111111112334455554433 7788889999999999999 88873 32 333 67777764 357
Q ss_pred HHHHHHHHHhcCc
Q 018243 304 AACLLKKLEEHGV 316 (359)
Q Consensus 304 ~~~~~~~l~~~gi 316 (359)
..+|++.|+....
T Consensus 328 ~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 328 MVAFAQAIQAASP 340 (409)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCc
Confidence 7889999977654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=210.35 Aligned_cols=329 Identities=16% Similarity=0.122 Sum_probs=208.1
Q ss_pred ccccccCC---CCC-ChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHhh-hh
Q 018243 4 RTVDLRSD---TVT-KPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVHC-ET 76 (359)
Q Consensus 4 ~~id~~~~---~~~-~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~~-~~ 76 (359)
.+|||.++ ++. .++|.+.+++.+.......++ ..+...++.+.+++.+ +.+..++++||++|+..++..+. ..
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~ 137 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT 137 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 46899877 333 356889998887554322222 3445566666666666 45556899999999999998842 12
Q ss_pred cCCeEEecCCCcceeeccccccc----------cCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 77 RGSEVILGDNSHIHIYENGGIST----------IGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~----------~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
.+++|++.+++|..... + ... ..|. .++.++. .|+++|++.+++.. +++++|
T Consensus 138 ~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-----~~~~~v 205 (453)
T 2cy8_A 138 GRRMILRFEGHYHGWHD-F-SASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG-----SDIAAF 205 (453)
T ss_dssp CCCEEEEECC------------------------------CGGGEEEECT-----TCHHHHHHHHHHHG-----GGEEEE
T ss_pred CCCEEEEEcCCcCCCch-h-hHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC-----CCEEEE
Confidence 45678888887664432 1 111 1132 1223332 28999999987310 367888
Q ss_pred EEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCce-eeE
Q 018243 141 CLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPV-GSV 216 (359)
Q Consensus 141 ~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~-gg~ 216 (359)
++++.+ ++||... +.+++++|+++|++||+++|+||+|. +.. .+.. ...+....|++ |++|+++++. .|+
T Consensus 206 i~ep~~-~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~--~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~ 279 (453)
T 2cy8_A 206 IAEPVG-SHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFR--VGNHGMQALLDVQPDLT--CLAKASAGGLPGGI 279 (453)
T ss_dssp EECSSE-HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT--TCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEE
T ss_pred EECCCC-CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccc--cCchhhhHHhCCCCcEE--EEChhhhCCcceEE
Confidence 886654 4799754 68999999999999999999999986 332 2221 11222245654 7779997532 378
Q ss_pred EecCHHHHHHHHH---HHHhhCCCcchhHHHHHHHHHHHHH-hHHHHhhhHHHHHHHHHHHHhcCC---CceEecCCccc
Q 018243 217 IVGSKEFIKKARR---LRKTLGGGMRQVGVLCAAALVALQE-NVLVMLDGDHKKAKLLAEGLNQLK---GLRVDVDAVET 289 (359)
Q Consensus 217 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~~~ 289 (359)
+++++++++.+.. .....+.++..+++.++++..+++. ..++..++..++.+++++.|+++. ++.... +..+
T Consensus 280 v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g 358 (453)
T 2cy8_A 280 LGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLA-YGRF 358 (453)
T ss_dssp EEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECCT
T ss_pred EechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEE-EEee
Confidence 8889888876543 1112333444566667777777765 422355667777888888876641 332212 3467
Q ss_pred eEEEEEecc-----c------------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITE-----D------------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 290 ~~~~~~~~~-----~------------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++|+.++. . ......++.+.|.++||.+.+.+ .+|+ +..++++++++++++|++++++
T Consensus 359 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l--~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 359 SGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFL--SAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp TEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT--EEEC--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC--CEEe--eccCCHHHHHHHHHHHHHHHHH
Confidence 788988864 1 12346789999988999996653 3555 4589999999999999999988
Q ss_pred HHh
Q 018243 353 VCE 355 (359)
Q Consensus 353 ~~~ 355 (359)
+.+
T Consensus 435 ~~~ 437 (453)
T 2cy8_A 435 LAD 437 (453)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=222.54 Aligned_cols=313 Identities=13% Similarity=0.100 Sum_probs=211.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCeEEcCCch-HHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC
Q 018243 33 VLMHDPTAFRLETEMAKVMGKEAGLFVPSGT-MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN 111 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt-~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 111 (359)
.++..+...++++.+++++|.+..+++++|+ +++..++.+++ ++||+|++++++|.+.+. +.+.+.|++++.++..
T Consensus 168 l~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~--~~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 168 LLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYN--SALAMAGGRPVYLQTN 244 (730)
T ss_dssp TTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHH--HHTTTTCCEEEEECEE
T ss_pred ccCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHH--HHHHHCCCEEEEEeCC
Confidence 4455567899999999999999888888886 77888888887 599999999999999886 3256788888887543
Q ss_pred C-C----CCCCHHHH-----HHHhcCC-CCCccCCce-eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccc
Q 018243 112 Q-D----GTMDIDLI-----EAAIRDP-KGEIVYPTT-RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179 (359)
Q Consensus 112 ~-~----~~~~~~~l-----~~~l~~~-~~~~~~~~~-~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 179 (359)
. + +.+|+++| ++++++. ++..+...+ ++|+++++ + |+|.+.+ +++|.++|+++|+++|+|++|
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n-~~G~v~d---l~~I~~la~~~g~~livDeAh 319 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T-YDGTIYN---AHEVVKRIGHLCDYIEFDSAW 319 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C-TTSEEEC---HHHHHHHHGGGBSEEEEECTT
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C-CCCeecC---HHHHHHHHHHcCCeEEEEccc
Confidence 2 2 33688888 8888741 000000112 78888664 3 8999987 899999999999999999998
Q ss_pred ccchhhhcCch-hHhhh---cCcc----EEEEeccccCCCcee-eEEec-CHHH--------HHHHHHHHHhhCCCcchh
Q 018243 180 IFNAAVALGVP-VRRLV---QAAD----SASVCLSKGLGAPVG-SVIVG-SKEF--------IKKARRLRKTLGGGMRQV 241 (359)
Q Consensus 180 ~~~~~~~~~~~-~~~~~---~~~d----~~~~s~~K~~g~~~g-g~~~~-~~~~--------~~~~~~~~~~~~~~~~~~ 241 (359)
+.+........ ...+. .++| +++.|+||+++++.+ |+++. ++.+ ...++........+. ++
T Consensus 320 ~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~sts-p~ 398 (730)
T 1c4k_A 320 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTS-PF 398 (730)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSS-CC
T ss_pred ccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCC-Cc
Confidence 54322111000 11121 1456 778899999987654 66643 2221 122222222222222 23
Q ss_pred HHHHHHHHHHHH---H-hHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCc-----------------------------
Q 018243 242 GVLCAAALVALQ---E-NVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAV----------------------------- 287 (359)
Q Consensus 242 ~~~~~~~~~~l~---~-~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~----------------------------- 287 (359)
....++...+++ . ...+++++..++++++++.|++ ++|+++..+..
T Consensus 399 ~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (730)
T 1c4k_A 399 YPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKW 478 (730)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchh
Confidence 333333333332 2 2233677888999999999998 67888743311
Q ss_pred -------cc-e-E----EEEEecc---------chHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 288 -------ET-N-I----VYFEITE---------DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 288 -------~~-~-~----~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
.+ . + +.+..+. ..+.++..+.+.|+++||.+...+...+|++++.++++++++.++++
T Consensus 479 ~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~a 558 (730)
T 1c4k_A 479 HAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQ 558 (730)
T ss_dssp TCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHH
T ss_pred ccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 11 1 1 4455531 12357889999998889999877788999999999999999999999
Q ss_pred HHHHHHHHH
Q 018243 346 FQKIYAGVC 354 (359)
Q Consensus 346 l~~~~~~~~ 354 (359)
|.++.+.+.
T Consensus 559 L~~i~~~~~ 567 (730)
T 1c4k_A 559 LLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999987664
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=203.26 Aligned_cols=279 Identities=16% Similarity=0.106 Sum_probs=202.9
Q ss_pred HHHHHHHHHcCCCC------CCccCC-ChHHHHHHHHHHHHhCCCCeEE---cCCchHHHHHHHHHhhhhcCCeEEecC-
Q 018243 17 TEAMRAAMASAEVD------DDVLMH-DPTAFRLETEMAKVMGKEAGLF---VPSGTMGNLISVLVHCETRGSEVILGD- 85 (359)
Q Consensus 17 ~~~~~~a~~~~~~~------~~~~~~-~~~~~~l~~~la~~~~~~~~~~---~~~gt~a~~~~l~~~~~~~g~~vl~~~- 85 (359)
.+++++++.+.... ...|.+ .+....+++.+++++|.+.+++ ++||++|+..++.+++ ++||+|++++
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-~pGD~Vl~~~~ 123 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL-RPGNTMLSVCG 123 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-CTTCEEEESSS
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence 36788888764322 122332 4567899999999999998887 8999999999999988 5999999998
Q ss_pred CCcceeeccc--------cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc---ccCCCceec
Q 018243 86 NSHIHIYENG--------GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT---HANCGGRCL 154 (359)
Q Consensus 86 ~~~~~~~~~~--------~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~---~~~ptG~~~ 154 (359)
+.|....... ......|++++.++.++++.+|++++++.+++. +++++|+++++ ++||||.+
T Consensus 124 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~------~~tklV~i~~s~~~p~nptg~i- 196 (427)
T 3i16_A 124 EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED------ESITLVHIQRSTGYGWRRALLI- 196 (427)
T ss_dssp SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC------TTEEEEEEECSCCSSSSCCCCH-
T ss_pred CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC------CCCEEEEEEcCCCCCCCCcccH-
Confidence 8876654100 225567889999988788889999999999842 47899999774 34477765
Q ss_pred ChhhHHHHHHHHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHH
Q 018243 155 SVEYTDSVGEIAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 155 ~~~~l~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~ 229 (359)
.++++|+++|++ +|+++|+|++|+.+... . .+...++|+++.|+||++|+ +.||+++++++++++++.
T Consensus 197 --~dl~~i~~la~~~~~g~~livD~a~~~~~~~--~---~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 197 --EDIKSIVDCVKNIRKDIICFVDNCYGEFMDT--K---EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp --HHHHHHHHHHHHHCTTSEEEEECTTTTTSSS--S---CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCCCEEEEECCCcccccc--C---CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 569999999999 99999999997543321 1 12223789999999999987 677999999999999876
Q ss_pred HHHhhCCCcchhH-HH-HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce-----EEEEEeccchHH
Q 018243 230 LRKTLGGGMRQVG-VL-CAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN-----IVYFEITEDSKL 302 (359)
Q Consensus 230 ~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~ 302 (359)
.....+.+....+ .. +..+...++... .++++..+++.++++.|+++ ++++. +. .+. ++.+.+.. ..
T Consensus 270 ~~~~~~~g~~~~~~~~~a~~~l~gl~~~~-~r~~~~~~~a~~la~~L~~~-g~~V~-p~-~~~~~~~~i~~i~l~~--~~ 343 (427)
T 3i16_A 270 RLTVPGIGGECGSTFGVVRSMYQGLFLAP-HISMEALKGAILCSRIMELA-GFEVM-PK-YDEKRSDIIQSIKFND--KD 343 (427)
T ss_dssp HHSCTTTGGGCCCCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT-TCEEE-SC-TTSCCSSSCEEEECSS--HH
T ss_pred hcccCccCccCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC-CCeec-CC-CCCCCccEEEEEEECC--HH
Confidence 4332222111111 11 333444454443 37888999999999999999 77773 32 444 77788864 24
Q ss_pred HHHHHHHHHHhcCc
Q 018243 303 YAACLLKKLEEHGV 316 (359)
Q Consensus 303 ~~~~~~~~l~~~gi 316 (359)
...+|++.|+....
T Consensus 344 ~~~~f~~~l~~~~~ 357 (427)
T 3i16_A 344 KLIEFCKGIQTGSP 357 (427)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhcCc
Confidence 77889999977643
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=211.50 Aligned_cols=309 Identities=14% Similarity=0.021 Sum_probs=206.4
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCC--C---CCCccCCChHH-----HHHHHHHHHHhCC------C-CeE-EcCCchH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAE--V---DDDVLMHDPTA-----FRLETEMAKVMGK------E-AGL-FVPSGTM 64 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~--~---~~~~~~~~~~~-----~~l~~~la~~~~~------~-~~~-~~~~gt~ 64 (359)
..|||..+.+..+. +.+.+++.+.. . ....|+...+. .++++.++++++. + ..+ +++|+++
T Consensus 23 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~ 102 (391)
T 3bwn_A 23 FVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQ 102 (391)
T ss_dssp SCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHH
T ss_pred CeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHH
Confidence 46899988887665 45555553322 1 22346666666 9999999999973 2 345 4455556
Q ss_pred HHHHHHHHhhhhcCC----eEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 65 GNLISVLVHCETRGS----EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 65 a~~~~l~~~~~~~g~----~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++..++.+++ ++|| +|++++|+|.+... .++..|.+++.++.+.++ ++ . +++++|
T Consensus 103 al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~d~~~------l~---~--------~~~k~v 161 (391)
T 3bwn_A 103 LCQAAVHALS-SLARSQPVSVVAAAPFYSTYVE---ETTYVRSGMYKWEGDAWG------FD---K--------KGPYIE 161 (391)
T ss_dssp HHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHH---HHHTTCBTTEEEEEESTT------CC---C--------CSCEEE
T ss_pred HHHHHHHHhc-CCCCCCcceEEEcCCCchhHHH---HHHHcCCeEEEecCCHHH------cC---C--------CCCEEE
Confidence 7777777776 5999 99999999877553 377788899888764321 11 1 568888
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEe
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIV 218 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~ 218 (359)
++ +.+|||||.+++ +|++.++.++++||+|++|.... ..+... ..+.++++.|+||.||.++. ||++
T Consensus 162 ~l-~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~~~----~~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~ 230 (391)
T 3bwn_A 162 LV-TSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYWPH----YTPITR-RQDHDIMLFTFSKITGHAGSRIGWAL 230 (391)
T ss_dssp EE-ESSCTTTCCCCC-----CCC-----CCCEEEEECTTCSTT----TSCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEE
T ss_pred EE-CCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCCCC----CCcccc-CCCCeEEEEechhhcCCCccceEEEE
Confidence 88 455669999986 23332222339999999975311 111111 12445777799999986553 8888
Q ss_pred c-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH-------------HhHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 219 G-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ-------------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 219 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
. ++++++.+.........+. +...+.++..+++ .+.++.++.+.++++++.+.|+++|++++..
T Consensus 231 ~~~~~l~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 308 (391)
T 3bwn_A 231 VKDKEVAKKMVEYIIVNSIGV--SKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPK 308 (391)
T ss_dssp ECCHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCC
T ss_pred ecCHHHHHHHHHHhcccccCC--CHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 6 8999998887766444444 3333444444443 2355567778889999999999987776532
Q ss_pred C------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcEEEEEeCCCCCHHHHHHHHHHHH
Q 018243 285 D------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STRVRIVVHHQISANDVHYTLSCFQ 347 (359)
Q Consensus 285 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lRi~~~~~~~~~~i~~~~~~l~ 347 (359)
+ +..+.++|+.++.. +.+.+.|.++||.+.|+. .+++||+++ .+++++++++++|+
T Consensus 309 p~~~~~~f~~~~~~~~g~~~~~~~~~~-----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~ 381 (391)
T 3bwn_A 309 YPEAFCNYFGKSLESYPAFAWLGTKEE-----TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLA 381 (391)
T ss_dssp CCCEEETTTTEEECCCCSEEEEEESSS-----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHH
T ss_pred CCccccccccccCCCcceEEEecCCcH-----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHH
Confidence 2 12345789888741 356667789999997752 568999996 58999999999999
Q ss_pred HHHHHH
Q 018243 348 KIYAGV 353 (359)
Q Consensus 348 ~~~~~~ 353 (359)
+++++.
T Consensus 382 ~~~~~~ 387 (391)
T 3bwn_A 382 NMKLIK 387 (391)
T ss_dssp SCC---
T ss_pred HHHHhh
Confidence 887653
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=211.02 Aligned_cols=331 Identities=16% Similarity=0.135 Sum_probs=213.0
Q ss_pred cccccccCCCC----CChHHHHHHHHHcCCCCCCcc-CCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhh-
Q 018243 3 TRTVDLRSDTV----TKPTEAMRAAMASAEVDDDVL-MHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCE- 75 (359)
Q Consensus 3 ~~~id~~~~~~----~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~- 75 (359)
.+++||.++.. ...+|++.+++.+.......+ .+.+...++++.++++++ .+..++++||++|+..++..+..
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~ 132 (429)
T 4e77_A 53 KAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY 132 (429)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHh
Confidence 35789988643 234689999988755443222 346778899999999985 45568999999999999987653
Q ss_pred hcCCeEEecCCCcceeecccccccc-------------CCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 TRGSEVILGDNSHIHIYENGGISTI-------------GGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~~-------------~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
..+++|++.+++|..... ..... .+. .+..++.+ |+++|++.+++.. ++
T Consensus 133 ~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-----~~ 200 (429)
T 4e77_A 133 TGRDKIIKFEGCYHGHAD--CLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYP-----QE 200 (429)
T ss_dssp HCCCEEEEETTCCCC--------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHST-----TT
T ss_pred hCCCEEEEEcCccCCCCh--hhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcC-----CC
Confidence 245677777666544332 00110 111 12222222 8999999997421 36
Q ss_pred eeEEEEeccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-
Q 018243 137 TRLICLENTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG- 214 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g- 214 (359)
+++|++++.++ .+|.. .+.+++++|.++|++||+++|+||+|... ..........+....|++ |++|.++++..
T Consensus 201 ~~~vi~ep~~~-~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~ 276 (429)
T 4e77_A 201 VACIIVEPVAG-NMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLT--CLGKIIGGGMPV 276 (429)
T ss_dssp EEEEEECSSBC-TTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEE--EEEGGGGTTSCC
T ss_pred EEEEEECCccC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCee--eecccccCCCCe
Confidence 78888866555 45554 44677999999999999999999998622 111111122222245654 66799875333
Q ss_pred eEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC---CCceEecCCccc
Q 018243 215 SVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVET 289 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~ 289 (359)
|++++++++++.+..... ..+.++..+++.++++..+++... ++..++..++.+++++.|+++ .++.... +..+
T Consensus 277 G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g 355 (429)
T 4e77_A 277 GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVV-NHVG 355 (429)
T ss_dssp EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEET
T ss_pred EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEee
Confidence 788899998877543211 234444556777777777775331 234556666666666666552 1332221 3467
Q ss_pred eEEEEEeccch------------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITEDS------------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 290 ~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++++.+.... .....++.+.|.++||.+.+++...+|++ ..++++++++++++|++++++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 356 GMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMS--LAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp TEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEECC--TTCCHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 88888876521 13457899999999999998877666665 479999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=209.98 Aligned_cols=324 Identities=17% Similarity=0.157 Sum_probs=216.1
Q ss_pred ccccccCCC---C-CChHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHh--hh
Q 018243 4 RTVDLRSDT---V-TKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVH--CE 75 (359)
Q Consensus 4 ~~id~~~~~---~-~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~--~~ 75 (359)
++|||.++. + ..++|.+.+++.+.......++ ..+...++++.+++++ +.+..++++||++|+..++..+ ..
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~ 132 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYT 132 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 468998762 3 3456888888877543322233 3566789999999999 5556688999999999999863 32
Q ss_pred hcCCeEEecCCCcceeeccccccc-------------cCCc------cceeeecCCCCCCCHHHHHHHhcCCCCCccCCc
Q 018243 76 TRGSEVILGDNSHIHIYENGGIST-------------IGGV------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPT 136 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~~-------------~~g~------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 136 (359)
++++|++.+++|..... + ... ..|+ +++.++.+ |+++|++.+++.. ++
T Consensus 133 -~~~~vi~~~~~yhg~~~-~-~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-----~~ 199 (424)
T 2e7u_A 133 -GRPYIVKFRGNYHGHAD-G-LLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRRG-----EE 199 (424)
T ss_dssp -CCCEEEEETTCCCCCCG-G-GSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHG-----GG
T ss_pred -CCCEEEEECCCcCCCcH-H-HHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhCC-----CC
Confidence 55788888887765433 1 111 1222 23334432 8999999887310 25
Q ss_pred eeEEEEeccccCCCceec-ChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCce
Q 018243 137 TRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPV 213 (359)
Q Consensus 137 ~~~v~i~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~ 213 (359)
+++|++++.++ +||... +.+++++|.++ ++||+++|+||+|. +.. .+.. ...+....|++ |++|+++++.
T Consensus 200 ~~~vi~ep~~~-~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~--~g~~~~~~~~~~~~di~--s~sK~l~~G~ 272 (424)
T 2e7u_A 200 IAAIIFEPVVG-NAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFR--LAFGGATELLGLKPDLV--TLGKILGGGL 272 (424)
T ss_dssp EEEEEECSSBC-TTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTT--SSTTHHHHHHTCCCSEE--EECGGGGTTS
T ss_pred EEEEEEeCCCC-CCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccc--cchhHHHHHhCCCcchh--hhhhhhhCCc
Confidence 77888855444 589765 68999999999 99999999999986 222 1221 11222245654 7789997532
Q ss_pred -eeEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcC---CCceEecCC
Q 018243 214 -GSVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQL---KGLRVDVDA 286 (359)
Q Consensus 214 -gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~ 286 (359)
.|++++++++++.+..... ..+.++..+++.++++..+++... ++..++..++.+++++.|+++ .++.... +
T Consensus 273 ~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 351 (424)
T 2e7u_A 273 PAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV-N 351 (424)
T ss_dssp SCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-E
T ss_pred ceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE-E
Confidence 2778889888877543111 233444556677777777775432 235666777888888888764 1332211 2
Q ss_pred ccceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 287 VETNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 287 ~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
..++++|+.+... ...+..++.+.|.++||.+.+++...+|++ ..++++++++++++|++++
T Consensus 352 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 352 RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLS--VAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSSCEECC--TTCCHHHHHHHHHHHHHHC
T ss_pred eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCCceEee--ccCCHHHHHHHHHHHHHhC
Confidence 4677889888641 123567899999899999988876656655 4799999999999998763
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=208.67 Aligned_cols=328 Identities=15% Similarity=0.114 Sum_probs=215.6
Q ss_pred ccccccCCC---CCC-hHHHHHHHHHcCCCCCCccC-CChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhh-h
Q 018243 4 RTVDLRSDT---VTK-PTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCE-T 76 (359)
Q Consensus 4 ~~id~~~~~---~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~-~ 76 (359)
++|||.++. +.+ .+|++.+++.+.......|+ ..+...++++.++++++ .+..++++||++|+..++..+.. .
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~ 132 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT 132 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 578999874 233 35889988887554322222 56777899999999985 44568889999999999976543 2
Q ss_pred cCCeEEecCCCcceeeccccccccCCcc-------------------ceeeecCCCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVH-------------------PRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~-------------------~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
.+++|++.+++|..... ......+.. ++.++.+ |+++|++.+++.. .++
T Consensus 133 ~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~-----~~~ 200 (427)
T 3fq8_A 133 GRDKIIKFEGCYHGHAD--MFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP-----GEI 200 (427)
T ss_dssp CCCEEEEEETCCCCSCG--GGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST-----TTE
T ss_pred CCCEEEEECCCcCCCCH--HHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC-----CCE
Confidence 34678888877665443 112222211 2222322 8999999998421 368
Q ss_pred eEEEEeccccCCCceecC-hhhHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCce-
Q 018243 138 RLICLENTHANCGGRCLS-VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPV- 213 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~- 213 (359)
++|+++++++ ++|...+ .+++++|.++|++||+++|+||+|. +. ..+.. ........|+ .|+||.++++.
T Consensus 201 ~~vi~~p~~~-~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~--~~g~~~~~~~~~~~~di--~t~sK~~~~G~~ 274 (427)
T 3fq8_A 201 AGVILEPIVG-NSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF--RIAYGGVQEKFGVTPDL--TTLGKIIGGGLP 274 (427)
T ss_dssp EEEEECSSBC-TTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT--TTBTTHHHHHTTCCCSE--EEECGGGGTTSS
T ss_pred EEEEEcCCcC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc--ccCcchhhHhcCCCCCh--hhhhhhhhCCcc
Confidence 8888866655 5676655 5779999999999999999999985 22 22221 1122224455 46679997432
Q ss_pred eeEEecCHHHHHHHHHHHH-hhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC---CCceEecCCcc
Q 018243 214 GSVIVGSKEFIKKARRLRK-TLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVE 288 (359)
Q Consensus 214 gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~ 288 (359)
.|++++++++++.+..... ..+.++..++..++++..+++... +...++..++.+++++.|+++ .++... .+..
T Consensus 275 ~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 353 (427)
T 3fq8_A 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAAC-GGQV 353 (427)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEE
T ss_pred eEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEEe
Confidence 2778889999887653211 234445556777777777775331 234556666666666666553 022221 1346
Q ss_pred ceEEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 289 TNIVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 289 ~~~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+.++++.+... ......++.+.|.++||.+.+++...++ ++..++++++++++++|++++++
T Consensus 354 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r~~--~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGF--TSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEE--CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCCEE--eeCcCCHHHHHHHHHHHHHHHHh
Confidence 77788877531 1123568899999999999888765444 45589999999999999998865
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=208.35 Aligned_cols=279 Identities=17% Similarity=0.137 Sum_probs=205.2
Q ss_pred HHHHHHHHHcCCCCC------CccCC-ChHHHHHHHHHHHHhCCCCeEE---cCCchHHHHHHHHHhhhhcCCeEEecC-
Q 018243 17 TEAMRAAMASAEVDD------DVLMH-DPTAFRLETEMAKVMGKEAGLF---VPSGTMGNLISVLVHCETRGSEVILGD- 85 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~------~~~~~-~~~~~~l~~~la~~~~~~~~~~---~~~gt~a~~~~l~~~~~~~g~~vl~~~- 85 (359)
.+++.+++.+..... ..|.+ .+...++++.+++++|.+.... ++||++|+..++.+++ ++||+|+++.
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~-~~Gd~Vl~~~~ 115 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL-RPGDELLYITG 115 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-CTTCEEEECSS
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-CCCCEEEEeCC
Confidence 367888887643221 12222 3567899999999999987654 7899999999998887 5999999998
Q ss_pred CCcceeeccc-------cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 86 NSHIHIYENG-------GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 86 ~~~~~~~~~~-------~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
+.|.+..... ..++..|++++.++.++++.+|+++|++.++ +++++|+++++++||+|...+.++
T Consensus 116 ~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~--------~~tk~V~i~~sp~np~~~~~~~~~ 187 (431)
T 3ht4_A 116 KPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH--------SNTKMIGIQRSKGYATRPSFTISQ 187 (431)
T ss_dssp SCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC--------TTEEEEEEECSCTTSSSCCCCHHH
T ss_pred CCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC--------CCCeEEEEECCCCCCCCCcCCHHH
Confidence 8877655310 1244578899999888889999999999998 789999999888889999999999
Q ss_pred HHHHHHHHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHHHHHHh
Q 018243 159 TDSVGEIAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLRKT 233 (359)
Q Consensus 159 l~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~~~ 233 (359)
+++|+++|++ +|+++|+|++|+.+... . .. ...++|+++.|++|++|+ +.||++++++++++.++.....
T Consensus 188 l~~i~~la~~~~~~~~livDea~~~~~~~--~-~~--~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~ 262 (431)
T 3ht4_A 188 IKEMIAFVKEIKPDVVVFVDNCYGEFIEE--Q-EP--CHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTS 262 (431)
T ss_dssp HHHHHHHHHHHCTTCEEEEECTTCTTSSS--C-CG--GGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCCEEEEeCCChhhccC--C-Cc--cccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhcc
Confidence 9999999999 99999999997654432 1 11 223689999999999865 5679999999999988765443
Q ss_pred hCCC--cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce-----EEEEEeccchHHHHHH
Q 018243 234 LGGG--MRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN-----IVYFEITEDSKLYAAC 306 (359)
Q Consensus 234 ~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 306 (359)
.+.+ .........++..+++... .++++..+++.++.+.|+++ |+++. +. ... ++.+.+.. .....+
T Consensus 263 ~~~g~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~a~~l~~~L~~~-g~~v~-p~-~~~~~~~li~~i~l~~--~~~~~~ 336 (431)
T 3ht4_A 263 PGIGAEAGASLYSLQEMYQGFFLAP-HVAGQALKGAIFTAAFLEKL-GMNTS-PA-WNAPRTDLIQSVQFDD--KDRMIA 336 (431)
T ss_dssp TTTTTSCSCCCSCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TCCEE-SC-TTSCCSSSCCEEECCC--HHHHHH
T ss_pred CCcccccCccHHHHHHHHhHhhhHH-HHHHHHHHHHHHHHHHHHhC-cCEec-CC-CCCCCccEEEEEEeCC--HHHHHH
Confidence 3222 2111111223344444433 36778889999999999998 77763 22 222 66677764 247788
Q ss_pred HHHHHHhcC
Q 018243 307 LLKKLEEHG 315 (359)
Q Consensus 307 ~~~~l~~~g 315 (359)
+++.|++..
T Consensus 337 ~~~~l~~~~ 345 (431)
T 3ht4_A 337 FCQAIQYAS 345 (431)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 999997653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=201.78 Aligned_cols=278 Identities=14% Similarity=0.094 Sum_probs=200.8
Q ss_pred hHHHHHHHHHcCCCCC------CccCC-ChHHHHHHHHHHHHhCCCCeEE---cCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 16 PTEAMRAAMASAEVDD------DVLMH-DPTAFRLETEMAKVMGKEAGLF---VPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 16 ~~~~~~~a~~~~~~~~------~~~~~-~~~~~~l~~~la~~~~~~~~~~---~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
+.+++.+++.+..... ..|.+ ......+|+.+++++|.+.+++ ++||++|+..++.+++ ++||+|++++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all-~pGD~Vl~~~ 123 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL-RPNDTMMSIC 123 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-CTTCEEEECS
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeC
Confidence 3478888888754321 22332 3567899999999999998888 8999999999999988 5999999998
Q ss_pred -CCcceeeccc--------cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecc---ccCCCcee
Q 018243 86 -NSHIHIYENG--------GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT---HANCGGRC 153 (359)
Q Consensus 86 -~~~~~~~~~~--------~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~---~~~ptG~~ 153 (359)
+.|....... ......|++++.++. +++.+|++++++.+++. +++++|+++++ ++||||.+
T Consensus 124 ~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~------~~tklV~i~~s~gyp~nptg~v 196 (427)
T 3hvy_A 124 GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD------DSIKLIHIQRSTGYGWRKSLRI 196 (427)
T ss_dssp SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC------TTEEEEEEESSCCSSSSCCCCH
T ss_pred CCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC------CCCEEEEEECCCCCCCCccccH
Confidence 8876544100 124567888888887 67889999999999831 47899999884 34477664
Q ss_pred cChhhHHHHHHHHHH--cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKK--HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~--~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~ 228 (359)
.++++|+++|++ +|+++++|++|+.+... . .+...++|+++.|+||++|+ +.||+++++++++++++
T Consensus 197 ---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~--~---~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~ 268 (427)
T 3hvy_A 197 ---AEIAEIIKSIREVNENVIVFVDNCYGEFVEE--K---EPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQAT 268 (427)
T ss_dssp ---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSS--S---CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCEEEEECCccccccC--C---CCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 569999999999 89999999997544321 1 12223789999999999987 67899999999999987
Q ss_pred HHHHhhCCC--cchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccce-----EEEEEeccchH
Q 018243 229 RLRKTLGGG--MRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN-----IVYFEITEDSK 301 (359)
Q Consensus 229 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~ 301 (359)
......+.. ...+...+..+...++... .++++..+++.++++.|+++ |+++. +. .+. ++.+.+.. .
T Consensus 269 ~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~-~r~~~~~~~a~~la~~L~~~-g~~V~-p~-~~~~~~~li~~~~l~~--~ 342 (427)
T 3hvy_A 269 FRVTVPGIGGECGSTFGVMRSLYEGLFMAP-HVTIEAVKGAVFCARIMELA-GFDVL-PK-YNDKRTDIIQAIKFND--E 342 (427)
T ss_dssp HHHSCTTTGGGCCCCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT-TCEEE-SC-TTSCCSSSEEEEECSS--H
T ss_pred HHhhcCCcccccCCCHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHhC-CCeec-CC-CCCCCceEEEEEeCCC--H
Confidence 654322221 1111111333444444433 37788889999999999999 77773 32 333 77777764 2
Q ss_pred HHHHHHHHHHHhcC
Q 018243 302 LYAACLLKKLEEHG 315 (359)
Q Consensus 302 ~~~~~~~~~l~~~g 315 (359)
....+|++.|+...
T Consensus 343 ~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 343 KKLIDFIKGIQTAS 356 (427)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccc
Confidence 46778999997653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=214.10 Aligned_cols=292 Identities=13% Similarity=0.061 Sum_probs=192.5
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCeEEcCC-chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec-
Q 018243 33 VLMHDPTAFRLETEMAKVMGKEAGLFVPS-GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN- 110 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~~~~~~-gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~- 110 (359)
.+...+...++++.+++ +|.+..+++++ |++++..++.+++ ++|++|++++++|.+... + +...|++++.++.
T Consensus 52 ~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~-~--~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 52 LHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLH-A--LDISQQEGHFIETH 126 (446)
T ss_dssp TTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHH-H--HHHHTCCEEECEEE
T ss_pred ccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHH-H--HHHcCCeEEEEeCe
Confidence 34456778999999999 99886655555 5688888888887 599999999999998776 3 5667889988876
Q ss_pred -CCC----CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhh
Q 018243 111 -NQD----GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185 (359)
Q Consensus 111 -~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~ 185 (359)
+++ +.+|++.| +. +++++|++++ +| ++|.+++ +++|.++|++||+++|+|++|+. ...
T Consensus 127 ~~~~~~~~~~~d~~~l---~~--------~~~~~v~~~~-~n-~~G~~~~---l~~I~~l~~~~~~~livDea~~~-~~~ 189 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NN--------DGHKLVVLTY-PN-YYGETFN---VEEVIKSLHQLNIPVLIDEAHGA-HFG 189 (446)
T ss_dssp ECTTTSSEEEEEC------------------CCEEEEES-SC-TTSCCCC---HHHHHHHHHHTTCCEEEECTTCT-TTT
T ss_pred eccccCcCCCCCHHHH---cC--------CCceEEEEEC-CC-CCeEecC---HHHHHHHHHhcCCeEEEcchhhh-hhc
Confidence 544 55788777 33 6788999966 44 6999988 79999999999999999999765 221
Q ss_pred hcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH--HHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhh
Q 018243 186 ALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK--KARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDG 262 (359)
Q Consensus 186 ~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (359)
+.+........++|+++.|+||+++++.| |+++.++++++ .++.....+..+. .+....++...+++.......++
T Consensus 190 f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s-~~~~~~aal~~a~~~l~~~g~~~ 268 (446)
T 2x3l_A 190 LQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSS-PSYLIMASLESAAQFYKTYDSTL 268 (446)
T ss_dssp STTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSS-CCHHHHHHHHHHHHHHHHCCCHH
T ss_pred cCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhCHHH
Confidence 11211111223679999999998766555 88887666543 3322222222222 12222222222332222111111
Q ss_pred HHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHH
Q 018243 263 DHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 263 ~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~ 342 (359)
..++...+.+.+++. ++++..+. ...++++.++. .+..++.+.|.++||.+...+..++|++++...+++++ ++
T Consensus 269 ~~~~~~~l~~~l~~~-g~~~~~~~-~~~~l~i~~~~---~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l 342 (446)
T 2x3l_A 269 FFAKRAQLIECLENK-GFEMLQVD-DPLKLLIKYEG---FTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LF 342 (446)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEECS-STTEEEEECTT---SCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CH
T ss_pred HHHHHHHHHHHHHHc-CCEECcCC-CCeEEEEEeCC---cCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HH
Confidence 233333334444433 77765432 34568888763 46778999998889999744567899999888899999 99
Q ss_pred HHHHHHHHHHH
Q 018243 343 LSCFQKIYAGV 353 (359)
Q Consensus 343 ~~~l~~~~~~~ 353 (359)
+++|+++++++
T Consensus 343 ~~aL~~~~~~~ 353 (446)
T 2x3l_A 343 DSLLRKIEDMI 353 (446)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHhh
Confidence 99999988765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=208.43 Aligned_cols=307 Identities=12% Similarity=-0.033 Sum_probs=213.4
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC--CCC--ccCCCh-H---HHHHHHHHHHHhC------CC--CeEEcCCchHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV--DDD--VLMHDP-T---AFRLETEMAKVMG------KE--AGLFVPSGTMGN 66 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~--~~~--~~~~~~-~---~~~l~~~la~~~~------~~--~~~~~~~gt~a~ 66 (359)
..|||..+.+..+. +.+.+++.+... +.. .|.... + ..++++.++++++ .+ ..++++|+++++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al 136 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLI 136 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHH
Confidence 45888887776555 667777776541 222 265555 5 7999999999986 22 235566667788
Q ss_pred HHHHHHh--------hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCcee
Q 018243 67 LISVLVH--------CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTR 138 (359)
Q Consensus 67 ~~~l~~~--------~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 138 (359)
..++.++ + ++||.|+++.|+|..... .++..|.+++.+. +|++.|++.++ ++++
T Consensus 137 ~~~~~~l~~~~~~~~~-~~Gd~Vlv~~P~y~~~~~---~~~~~g~~~~~~~------~d~~~l~~~~~--------~~~k 198 (427)
T 2hox_A 137 HGLVISLSPNMTATPD-APESKVVAHAPFYPVFRE---QTKYFDKKGYVWA------GNAANYVNVSN--------PEQY 198 (427)
T ss_dssp HHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHH---HHHHSCBTTEEEE------EEGGGGTTCSC--------GGGE
T ss_pred HHHHHHHhhccccccC-CCCCEEEEeCCCcccHHH---HHHHcCCeeeeec------CCHHHHHHhhc--------CCce
Confidence 8888777 5 599999999999866443 3667788877543 47778887776 6788
Q ss_pred EEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eE
Q 018243 139 LICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SV 216 (359)
Q Consensus 139 ~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~ 216 (359)
+|++++ ++||||.+++ +.++ ++..+.|+++ +. . ..+...+..+.++++.|+||.+|.++. ||
T Consensus 199 ~v~l~~-p~NPtG~~~~-~~l~---------~~~~i~d~~~-~~--~--~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 262 (427)
T 2hox_A 199 IEMVTS-PNNPEGLLRH-AVIK---------GCKSIYDMVY-YW--P--HYTPIKYKADEDILLFTMSKFTGHSGSRFGW 262 (427)
T ss_dssp EEEEES-SCTTTCCCCC-CSST---------TCEEEEECTT-CS--T--TTSCCCSCBCCSEEEEEHHHHTSCGGGCCEE
T ss_pred EEEEcC-CCCCcccccH-HHHc---------CCCEEEeecc-cC--C--CCCccccCCCceEEEEeChhcCCCCCceEEE
Confidence 998855 5669999999 5331 5678889875 21 1 112222223556788899999986542 88
Q ss_pred Eec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHH--------------hHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 217 IVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQE--------------NVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
+++ ++++++.++........+.+ ...+.++...++. +++..++++.++++++.+.|++++|+.
T Consensus 263 ~~~~~~~l~~~l~~~~~~~~~~~~--~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 340 (427)
T 2hox_A 263 ALIKDESVYNNLLNYMTKNTEGTP--RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340 (427)
T ss_dssp EEECCHHHHHHHHHHHHHHTSSCC--HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred EEECCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 888 69999998887766554443 3333333333432 233355677888999999999987776
Q ss_pred E--ec-----------CCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccC-----CCcEEEEEeCCCCCHHHHHHH
Q 018243 282 V--DV-----------DAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPE-----SSTRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 282 ~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~-----~~~~lRi~~~~~~~~~~i~~~ 342 (359)
+ .. .+..++++|+.++. +..++.+.| .++||.+.|+ +.+++|+++. .++++++++
T Consensus 341 ~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~ 414 (427)
T 2hox_A 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQL 414 (427)
T ss_dssp CCCCCSCEEETTTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHH
T ss_pred ccccccccccccccccCCCCceEEEEECCC----cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHH
Confidence 5 11 23458899999975 344677776 6899999775 2578999996 589999999
Q ss_pred HHHHHHHHHH
Q 018243 343 LSCFQKIYAG 352 (359)
Q Consensus 343 ~~~l~~~~~~ 352 (359)
+++|++++++
T Consensus 415 l~~l~~~~~~ 424 (427)
T 2hox_A 415 MYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999988753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=204.90 Aligned_cols=284 Identities=16% Similarity=0.109 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 39 TAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 39 ~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
...++++.+++++|.+.. +++++|+.++..++.++..++|++|+++.++|.++.... ..++..|++++.++. +++.
T Consensus 109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~ 187 (438)
T 1wyu_A 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGR 187 (438)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTB
T ss_pred HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCc
Confidence 357889999999999754 566777744455544444468999999999998876411 112457889998876 4567
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecc-cccchhhhcCchhHhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA-RIFNAAVALGVPVRRL 194 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a-~~~~~~~~~~~~~~~~ 194 (359)
+|+++ ++ +++++|+++++ ||||.+.+ +++|.++|+++|+++|+|.. ++++... .. ..+
T Consensus 188 ~d~~~----i~--------~~t~~v~i~~p--n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~---~~-~~~ 246 (438)
T 1wyu_A 188 TPLPE----VG--------EEVGAVVVQNP--NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK---PP-GAY 246 (438)
T ss_dssp CCCCC----CC--------TTEEEEEEESS--CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC---CH-HHH
T ss_pred cCHHH----hC--------CCeEEEEEECC--CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC---CC-ccC
Confidence 77765 55 68999999775 69999886 89999999999999997733 4344321 11 222
Q ss_pred hcCccEEEEeccc-----cCCCceeeEEecCHHHHHHHHHH-------------------------HH-hhCCCcch-hH
Q 018243 195 VQAADSASVCLSK-----GLGAPVGSVIVGSKEFIKKARRL-------------------------RK-TLGGGMRQ-VG 242 (359)
Q Consensus 195 ~~~~d~~~~s~~K-----~~g~~~gg~~~~~~~~~~~~~~~-------------------------~~-~~~~~~~~-~~ 242 (359)
++|++++|.+| ++++|..|+++.++++.+.+... +. ....+... ..
T Consensus 247 --g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~ 324 (438)
T 1wyu_A 247 --GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQ 324 (438)
T ss_dssp --TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCH
T ss_pred --CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHH
Confidence 78999999555 45566448899888776553110 11 11111100 11
Q ss_pred HHHH-HH--HHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCcee
Q 018243 243 VLCA-AA--LVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 243 ~~~~-~~--~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 318 (359)
..+. ++ +..+ +...++..++..++++++.+.|+++||+++..+......+.+.++ .+..++.++|.++||.+
T Consensus 325 ~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~v 400 (438)
T 1wyu_A 325 LTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP----KDPEAVRRALAERGFHG 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS----SCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC----CCHHHHHHHHHHCCcee
Confidence 1111 11 2222 233455777788999999999999989988543212222334433 25778999998899998
Q ss_pred --ccCC---CcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 319 --MPES---STRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 319 --~~~~---~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++. .+++|++++..++++++++++++|++++
T Consensus 401 ~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 401 ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 4442 6789999988899999999999998764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=203.66 Aligned_cols=330 Identities=15% Similarity=0.099 Sum_probs=209.6
Q ss_pred cccccccCCCC----CChHHHHHHHHHcCCCC-----CCccCCChHHHHHHHH----HHHHh--CCCCeEEcCCchHHHH
Q 018243 3 TRTVDLRSDTV----TKPTEAMRAAMASAEVD-----DDVLMHDPTAFRLETE----MAKVM--GKEAGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~----~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~----la~~~--~~~~~~~~~~gt~a~~ 67 (359)
.++|||.++.. ...+|++.+++.+.... ...|+. ....++++. +++++ +.+..++++||++|+.
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~ 141 (472)
T 1ohv_A 63 NRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNE 141 (472)
T ss_dssp CEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHH
T ss_pred CEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHH
Confidence 35789977632 33469999999885421 112332 222344455 44455 3445789999999999
Q ss_pred HHHHHhhh------h------------------cC---CeEEecCCCcceeeccccccccCCccc-----------eeee
Q 018243 68 ISVLVHCE------T------------------RG---SEVILGDNSHIHIYENGGISTIGGVHP-----------RTVK 109 (359)
Q Consensus 68 ~~l~~~~~------~------------------~g---~~vl~~~~~~~~~~~~~~~~~~~g~~~-----------~~v~ 109 (359)
.++..++. + +| ++|++.+++|..... + .....|... ..++
T Consensus 142 ~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~ 219 (472)
T 1ohv_A 142 NAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTM-G-CLATTHSKAIHKIDIPSFDWPIAP 219 (472)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSH-H-HHHHCCSCHHHHTTSCCCCCCEEC
T ss_pred HHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccH-H-HHhcCCCccccccCCCCCCCcccC
Confidence 99998841 0 24 788888877655433 1 122323211 1111
Q ss_pred cCC-CC-------------CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEE
Q 018243 110 NNQ-DG-------------TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLH 174 (359)
Q Consensus 110 ~~~-~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li 174 (359)
.+. .+ ..|+++|++.++++.+. ..++++|++++.++ ++|. .++.+++++|+++|++||+++|
T Consensus 220 ~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~--~~~~~~vive~v~~-~~G~~~~~~~~l~~l~~l~~~~g~lli 296 (472)
T 1ohv_A 220 FPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK--KKTVAGIIVEPIQS-EGGDNHASDDFFRKLRDISRKHGCAFL 296 (472)
T ss_dssp CCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEEECSSBC-TTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCcccCccccccccchhHHHHHHHHHHHHHHhcCCC--CCCEEEEEEcCCcC-CCCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 110 00 12578888888731000 01788999977655 6896 5678999999999999999999
Q ss_pred EecccccchhhhcCc--hhHhhhcC--ccEEEEeccccC-CCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHH
Q 018243 175 IDGARIFNAAVALGV--PVRRLVQA--ADSASVCLSKGL-GAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAAL 249 (359)
Q Consensus 175 ~D~a~~~~~~~~~~~--~~~~~~~~--~d~~~~s~~K~~-g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (359)
+||+|.. ++..+. ....+... +|++ +++|++ + ||+++ ++++. .+ .....+.++..+++.++++.
T Consensus 297 ~DEv~~g--~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~---GG~~~-~~~~~-~~--~~~~~~~T~~~~~~~~aaa~ 365 (472)
T 1ohv_A 297 VDEVQTG--GGSTGKFWAHEHWGLDDPADVM--TFSKKMMT---GGFFH-KEEFR-PN--APYRIFNTWLGDPSKNLLLA 365 (472)
T ss_dssp EECTTTT--TTTTSSSSGGGGGCCSSCCSEE--EECGGGSS---EEEEE-CGGGS-CS--SSSSSCCSSSSCHHHHHHHH
T ss_pred EeCcccC--CCCCCCchhccccCCCCCCCEE--EEcccccc---CCccC-chhhc-cc--ccccccCccCccHHHHHHHH
Confidence 9999862 222222 22222111 5654 677984 4 46665 55542 11 11123344455667777777
Q ss_pred HHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CC-ceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC
Q 018243 250 VALQENVL-VMLDGDHKKAKLLAEGLNQL----KG-LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS 323 (359)
Q Consensus 250 ~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 323 (359)
.+++...+ ...++..++.++|++.|+++ |+ +... +..+.++++.+.. ......+.+.|.++||.+.+++.
T Consensus 366 aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~--~~~g~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~g~ 441 (472)
T 1ohv_A 366 EVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV--RGRGTFCSFDTPD--ESIRNKLISIARNKGVMLGGCGD 441 (472)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE--EEETTEEEEECSS--HHHHHHHHHHHHHTTEECEEETT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee--cCCceEEEEEeCC--hhHHHHHHHHHHHCCeEEecCCC
Confidence 77754332 35566777888888887764 43 3322 2357777777754 13567899999899999988877
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 324 TRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 324 ~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++|++++..++++++++++++|+++++++
T Consensus 442 ~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 442 KSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999988754
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=192.13 Aligned_cols=334 Identities=15% Similarity=0.141 Sum_probs=216.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhC-CCCeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMG-KEAGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++ +....+|++.+++.++..... .....+...++.+.+++.++ .+...+++||++|++.+++.++..
T Consensus 87 ~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~ 166 (454)
T 4ao9_A 87 HRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHF 166 (454)
T ss_dssp CEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred CEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhc
Confidence 367898875 233445899888877554322 23345667889999999885 455688899999999999988753
Q ss_pred cC-CeEEecCC-CcceeeccccccccC--CccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 77 RG-SEVILGDN-SHIHIYENGGISTIG--GVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 77 ~g-~~vl~~~~-~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
.| ++|+.... +|......+...... ......++.+ |.+.+++.++++. +++.+|++++..++.+-.
T Consensus 167 tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~-----~~iAavIvEPv~g~~G~~ 236 (454)
T 4ao9_A 167 TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHG-----PEIAVVLVEPMQGASGCI 236 (454)
T ss_dssp HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTG-----GGEEEEEECSEESTTTCE
T ss_pred ccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcC-----CceEEEEeccccCCCCcc
Confidence 33 45665444 444333211101111 1122233443 8999999998532 578999999998865445
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCC--CceeeEEecCHHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLG--APVGSVIVGSKEFIKKARRL 230 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g--~~~gg~~~~~~~~~~~~~~~ 230 (359)
..+.+++++|+++|++||+++|+||++. |-.+ .+.....+.-.+|+++++ |.+| .|. |.+.+++++++.+...
T Consensus 237 ~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G-~~~a~e~~gv~PDi~t~g--K~lggG~Pi-ga~~~~~ei~~~~~~~ 311 (454)
T 4ao9_A 237 PGQPDFLQALRESATQVGALLVFDEVMT-SRLA-PHGLANKLGIRSDLTTLG--KYIGGGMSF-GAFGGRADVMALFDPR 311 (454)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGS-TTCHHHHHTCCCSEEEEE--GGGGTTSSC-EEEEECHHHHGGGCTT
T ss_pred CCchhhHHHHHHHHhhcCCEEEEECCCc-CCCc-cccchhccCCCCcEEEec--cccCCCCcc-eeeeeHHHHHHHHhhc
Confidence 5667999999999999999999999985 4222 111222233357877655 6554 344 5577888888775321
Q ss_pred H--HhhCCCcchhHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHhcC---CCceEecCCccceEEEEEeccc-----
Q 018243 231 R--KTLGGGMRQVGVLCAAALVALQENV-LVMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETNIVYFEITED----- 299 (359)
Q Consensus 231 ~--~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~----- 299 (359)
. ...++|++.+++.+++++.+|+... ++..++..++.++|++.|+++ .++.... ...+.++.+.+...
T Consensus 312 ~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v-rg~G~m~gi~f~~~~~~~~ 390 (454)
T 4ao9_A 312 TGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQF-TGIGSLMNAHFVQGDVRSS 390 (454)
T ss_dssp TCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEE-EEETTEEEEESCCSCCCSG
T ss_pred cCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEE-eeeceEEEEEEecCCCCCH
Confidence 1 1246677778888888888886542 235566677777777777653 1222111 12444555544221
Q ss_pred ------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 300 ------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 300 ------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+......+...|.++||++.|.+ ++.++..+|++|+|+++++|++++.++..-
T Consensus 391 ~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~----~~~~s~~~T~~dId~~l~al~~~l~~~~a~ 449 (454)
T 4ao9_A 391 EDLAAVDGRLRQLLFFHLLNEDIYSSPRG----FVVLSLPLTDADIDRYVAAIGSFIGGHGAL 449 (454)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTTEECCTTC----EEECCTTCCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHhhhHHHHHHHHHHHHHCCEEEcCCC----CEEEeCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 11234567778889999997754 344555799999999999999999987653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=194.73 Aligned_cols=319 Identities=14% Similarity=0.068 Sum_probs=207.1
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCC------------ccCCChHHHHHHHHHHHHhCCCC---eEE-cCCchHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDD------------VLMHDPTAFRLETEMAKVMGKEA---GLF-VPSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~---~~~-~~~gt~a~ 66 (359)
|..+.|.+.-++..+++++++|.+...... .........+.|+.+++++|.+. .++ ++|||+++
T Consensus 25 m~~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 25 MAQVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp --CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred hccCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 344556666666667999999987543211 01113456889999999999963 355 47999999
Q ss_pred HHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCC-CCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGT-MDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~-~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
..++..+. ++|+++++...++++... ...++..| ++..++.+ .+|. +++++++..++ +++++|++.
T Consensus 105 n~ai~~l~-~~gd~v~~~~~~~~~~~~-~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~--------~~t~lV~~~ 173 (386)
T 3qm2_A 105 AGVPLNLL-GDKTTADYVDAGYWAASA-IKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS--------DNAAYLHYC 173 (386)
T ss_dssp HHHHHHHC-TTCCEEEEEESSHHHHHH-HHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC--------TTCSCEEEC
T ss_pred HHHHHhcc-CCCCeEEEEeCCHHHHHH-HHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC--------CCCcEEEEE
Confidence 99999988 589987755554444321 12355667 77777766 4554 67777777777 789998884
Q ss_pred ccccCCCcee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCH
Q 018243 144 NTHANCGGRC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSK 221 (359)
Q Consensus 144 ~~~~~ptG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~ 221 (359)
+ .+|.||.. .|.+++ . +|+++++|.+|++|..+ ..+.. .|++++|.+|++| |.| |+++.++
T Consensus 174 h-~et~tG~~i~pi~~i---~-----~g~~~~vDa~qs~g~~p---idv~~----~~~~~~s~hK~lG-P~G~g~l~v~~ 236 (386)
T 3qm2_A 174 P-NETIDGIAIDETPDF---G-----PEVVVTADFSSTILSAP---LDVSR----YGVIYAGAQKNIG-PAGLTLVIVRE 236 (386)
T ss_dssp S-EETTTTEECCCCCCC---C-----TTCCEEEECTTTTTSSC---CCGGG----CSEEEEETTTTTC-CTTEEEEEEEG
T ss_pred C-CcCCcCEecCchhhh---c-----CCCEEEEEcccccCCCC---CCccc----cCEEEEecccccC-CCccEEEEECH
Confidence 4 45578996 664444 2 79999999999776553 22333 2467789999997 777 8888876
Q ss_pred HHHHHHH----------HH-HHh-hCCCcchhHHHHH-HHHHHH-HH-hHHHHhhhHHHHHHHHHHHHhcCCCc-eEecC
Q 018243 222 EFIKKAR----------RL-RKT-LGGGMRQVGVLCA-AALVAL-QE-NVLVMLDGDHKKAKLLAEGLNQLKGL-RVDVD 285 (359)
Q Consensus 222 ~~~~~~~----------~~-~~~-~~~~~~~~~~~~~-~~~~~l-~~-~~~~~~~~~~~~~~~l~~~l~~~~g~-~~~~~ 285 (359)
++.+.+. .. ... ...+.....+... .++..+ +. ..+.+.++..++++++++.|+++ ++ ....+
T Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~ 315 (386)
T 3qm2_A 237 DLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVA 315 (386)
T ss_dssp GGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBC
T ss_pred HHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 6532111 00 000 1112222222222 223333 33 46657778888999999999998 65 22111
Q ss_pred -Cccc-eEEEEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 286 -AVET-NIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 286 -~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
...+ ..+.|.++. .+.+ .++.+.|.++||.+..+.. +.+|++++..++++|++++++.|+++.++
T Consensus 316 ~~~rs~~iv~f~~~~-~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 316 QANRSRMNVPFQLAD-NTLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp GGGBCSSEEEEEESS-GGGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCceEEEEECCC-cccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 1233 467788875 2345 6788889999999866532 46999999999999999999999988765
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-24 Score=184.01 Aligned_cols=316 Identities=17% Similarity=0.122 Sum_probs=212.3
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-----EEcCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-----LFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-----~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
++.+.+++.....+ ..+|+.-+..+++| ++.+++||.+.. +-..||++|+..++.+++ +|||
T Consensus 67 S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All-~PGD 145 (490)
T 3ou5_A 67 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL-QPHD 145 (490)
T ss_dssp CHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-C-CC
T ss_pred CHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc-CCCC
Confidence 37788888764433 23466666666555 446788999874 778899999999999999 5999
Q ss_pred eEEecCCCcceeeccc-----cccccCCc--cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 80 EVILGDNSHIHIYENG-----GISTIGGV--HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+|+..+..|......+ ......|. +.+.++.+ +++.+|.+++++...+ .++++|++ ....+|
T Consensus 146 ~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~-------~kPklIi~-G~SaY~-- 215 (490)
T 3ou5_A 146 RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-------FRPRLIIA-GTSAYA-- 215 (490)
T ss_dssp CEECBC----------------------------CBCEETTTTEECHHHHHHHHHH-------HCCSEEEE-CCSSCC--
T ss_pred EEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh-------cCCCeEEE-CCccCc--
Confidence 9998887776654422 11222332 33344433 5688999999999986 68999998 434333
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH----------
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK---------- 221 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~---------- 221 (359)
..++ +++++++|++.|+++++|-+|..|... .+.-..++. .+|+++.|.||+|.+|.||+|++++
T Consensus 216 r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA-~g~~psP~~-~ADvVTtTTHKTLrGPrGG~Il~~~~~~~~~~k~~ 290 (490)
T 3ou5_A 216 RLID---YARMREVCDEVKAHLLADMAHISGLVA-AKVIPSPFK-HADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHH-TTSSCCGGG-TCSEEEEESSSTTCSCSCEEEEEECSEEEECC--C
T ss_pred cccC---HHHHHHHHhhcccEEEechhhhhhhhc-ccccCCccc-cceEEeccccccccCCCceEEEecccccccccccc
Confidence 3444 899999999999999999999776654 344344453 6999999999999999999888765
Q ss_pred -----HHHHHHHHHHHh-hCCCcchhHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 222 -----EFIKKARRLRKT-LGGGMRQVGVLCAAA---LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 222 -----~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
++.+++...... .-++. ....+++.+ ..++........++..+|++.|.+.|.+. |+.+.........+
T Consensus 291 ~~~~~~~~kkin~aVFPg~qggp-~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlv 368 (490)
T 3ou5_A 291 REIPYTFEDRINFAVFPSLQGGP-HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLV 368 (490)
T ss_dssp CEEECCCHHHHHHHHTTTTCSSC-CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred chhHHHHHHHHHhhcCccccccc-hHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEE
Confidence 355555432211 11111 122222222 23343334448888999999999999999 99998777778888
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcee----ccC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLV----MPE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.+.. .+.+..+..+.|.+.||.+ .|+ .+.+|||.. +.++.++|++++.+.|.+++.
T Consensus 369 LvDl~~-~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 369 LVDLRP-KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EEECGG-GTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeccc-cCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 898876 4567888888999999987 343 345799964 456889999999999998875
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=210.54 Aligned_cols=308 Identities=16% Similarity=0.142 Sum_probs=210.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCeEEcCCch-HHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC
Q 018243 35 MHDPTAFRLETEMAKVMGKEAGLFVPSGT-MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD 113 (359)
Q Consensus 35 ~~~~~~~~l~~~la~~~~~~~~~~~~~gt-~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 113 (359)
.......++++.+++++|.+..+++++|+ +++..++.+++ ++||+|++++++|.+.+. + +...|++++.++...+
T Consensus 202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~-~--~~~~G~~~v~v~~~~~ 277 (755)
T 2vyc_A 202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQ-G--LMLTGAKPVYMVPSRN 277 (755)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHH-H--HHHHCCEEEEECCCBC
T ss_pred cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHH-H--HHHcCCEEEEEeCCCC
Confidence 34566789999999999999888788876 67888888887 599999999999999886 3 6677889988865432
Q ss_pred -----CCC-----CHHHHHHHhcCCCCC--ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccccc
Q 018243 114 -----GTM-----DIDLIEAAIRDPKGE--IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIF 181 (359)
Q Consensus 114 -----~~~-----~~~~l~~~l~~~~~~--~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 181 (359)
+.+ |+++|++++++.+.. ....++++++++++ ||+|.+.+ +++|.++|++||+++|+|++|+.
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~ 352 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYG 352 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCT
T ss_pred ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC---HHHHHHHHHHcCCEEEEECcCch
Confidence 345 999999999742110 01123458888664 48999977 89999999999999999999854
Q ss_pred chhhhcCc--hhHhhhcC--ccE------EEEeccccCCCce-eeEEecCHH---H-HHHHHHHHHhhCCCcchhHHHHH
Q 018243 182 NAAVALGV--PVRRLVQA--ADS------ASVCLSKGLGAPV-GSVIVGSKE---F-IKKARRLRKTLGGGMRQVGVLCA 246 (359)
Q Consensus 182 ~~~~~~~~--~~~~~~~~--~d~------~~~s~~K~~g~~~-gg~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~ 246 (359)
+... .+. ....+ .+ +|+ ++.|+||+++++. ||+++.+++ + ...+.........+. ++....+
T Consensus 353 ~~~~-~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~s-p~~~~ia 429 (755)
T 2vyc_A 353 YARF-NPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTS-PLYAICA 429 (755)
T ss_dssp TGGG-CGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSS-CCHHHHH
T ss_pred hccc-CcccCCcchh-cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCCCC-HHHHHHH
Confidence 3222 111 11122 23 454 7779999998775 466665433 1 123332222222222 2333333
Q ss_pred HHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCC---------ceEecCCc--------------------------
Q 018243 247 AALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKG---------LRVDVDAV-------------------------- 287 (359)
Q Consensus 247 ~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g---------~~~~~~~~-------------------------- 287 (359)
+...+++ ...+.+.++..++++++++.|+++++ +++..+..
T Consensus 430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (755)
T 2vyc_A 430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC 509 (755)
T ss_dssp HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence 3333443 21234777888888999999988766 55432210
Q ss_pred ----------------cc------eEEEEEeccc--------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHH
Q 018243 288 ----------------ET------NIVYFEITED--------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 288 ----------------~~------~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~ 337 (359)
.+ ..+.+.++.- .++++..+.+.|+++||.+...+...+|+.++.+.+++
T Consensus 510 ~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~t~~ 589 (755)
T 2vyc_A 510 WVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRG 589 (755)
T ss_dssp TBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTCCTT
T ss_pred hccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCCCHH
Confidence 11 2345555420 13456899999988999987778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018243 338 DVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 338 ~i~~~~~~l~~~~~~~~ 354 (359)
++++++++|.++.+.+.
T Consensus 590 ~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 590 KWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999877653
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=195.25 Aligned_cols=315 Identities=13% Similarity=0.047 Sum_probs=209.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCC-----c---cCC----ChHHHHHHHHHHHHhCCCC---eEEc-CCchHHHHHHHHHhh
Q 018243 11 DTVTKPTEAMRAAMASAEVDDD-----V---LMH----DPTAFRLETEMAKVMGKEA---GLFV-PSGTMGNLISVLVHC 74 (359)
Q Consensus 11 ~~~~~~~~~~~~a~~~~~~~~~-----~---~~~----~~~~~~l~~~la~~~~~~~---~~~~-~~gt~a~~~~l~~~~ 74 (359)
.+....+++|.++|.+...... . ... .....+.|+.+++++|.+. .+++ .|||+++..++..+.
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~ 98 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI 98 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHG
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhcc
Confidence 3444555899999988654211 1 111 2345788899999999974 3553 689999999999988
Q ss_pred hh-cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 75 ET-RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 75 ~~-~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
.. +||++++....|++... ...++..|..++.++.+.++..+++.++..++ +++++|.+.+ .+|.||..
T Consensus 99 ~~~~Gd~v~~~~~g~~~~~~-~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~--------~~t~lV~~~h-~et~tG~~ 168 (377)
T 3e77_A 99 GLKAGRCADYVVTGAWSAKA-AEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN--------PDASYVYYCA-NETVHGVE 168 (377)
T ss_dssp GGSTTCEEEECCCSHHHHHH-HHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC--------TTCSCEEEES-EETTTTEE
T ss_pred CCCCCCeEEEEECCHHHHHH-HHHHHHhCCceEEeccCCCcCCCCChHHhccC--------CCccEEEEeC-ccCchheE
Confidence 42 38898877766665422 13356678776666766566667777665555 7889998854 45588999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHH----
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKAR---- 228 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~---- 228 (359)
.|. +|+++|+++++|.++++|..+ ..... .+++++|.+|++| |.| |+++.++++.+.+.
T Consensus 169 ~pi--------i~~~~~~~~~vD~~q~~g~~~---id~~~----~~~~~~s~~K~~g-p~G~g~l~~~~~~l~~~~~~~p 232 (377)
T 3e77_A 169 FDF--------IPDVKGAVLVCDMSSNFLSKP---VDVSK----FGVIFAGAQKNVG-SAGVTVVIVRDDLLGFALRECP 232 (377)
T ss_dssp CSS--------CCCCTTCCEEEECTTTTTSSC---CCGGG----CSEEEEEGGGTTS-CTTCEEEEEETTSCSCCCTTSC
T ss_pred chh--------hhccCCCEEEEEcccccCCCC---Cchhh----cCEEEEecccccC-CCccEEEEEcHHHHhhccCCCC
Confidence 884 367899999999998776553 22322 3467889999997 777 88887665532211
Q ss_pred ------HHH-HhhCCCc-chhHHHHH-HHHHHH-HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecC--Cccce-EEEE
Q 018243 229 ------RLR-KTLGGGM-RQVGVLCA-AALVAL-QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AVETN-IVYF 294 (359)
Q Consensus 229 ------~~~-~~~~~~~-~~~~~~~~-~~~~~l-~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~-~~~~ 294 (359)
... .....++ ....+... .++..+ +. ..+.+.++..++++++++.|+++||+.+... ...++ .+.|
T Consensus 233 ~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf 312 (377)
T 3e77_A 233 SVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPF 312 (377)
T ss_dssp GGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEE
T ss_pred chhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEE
Confidence 111 1111122 11222211 122223 23 4565777888999999999999988875321 12333 5778
Q ss_pred Eeccc---hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 295 EITED---SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 295 ~~~~~---~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++.- ...+ ..+.+.|.++||.+.++. .+.+|++++..++++|++.+++.|++++++
T Consensus 313 ~~~~~~~~~~~~-~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 313 RIGNAKGDDALE-KRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EESSTTCCHHHH-HHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCchhHH-HHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 88751 1112 467788888999986652 256999999999999999999999988765
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=187.45 Aligned_cols=315 Identities=13% Similarity=0.122 Sum_probs=207.4
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCC-----cc--C-----CChHHHHHHHHHHHHhCCCC---eEE-cCCchHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDD-----VL--M-----HDPTAFRLETEMAKVMGKEA---GLF-VPSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~-----~~--~-----~~~~~~~l~~~la~~~~~~~---~~~-~~~gt~a~ 66 (359)
++.+.|..+.... +++++++|.+...... .+ + ......+.|+.++++++.+. .++ ++|||+++
T Consensus 4 ~~~~~f~pgpt~~-~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 4 MRKINFSAGPSTL-PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF 82 (361)
T ss_dssp CCCEECCSSSCCC-CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred cceEeecCCCCCC-cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH
Confidence 3556676655444 4888999887554211 11 0 12456788899999999852 355 77889999
Q ss_pred HHHHHHhhhhcCCeEE-ecCCCcceeeccccccccCCccceeeecCCCCC--CCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 67 LISVLVHCETRGSEVI-LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT--MDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
..++..+. +++++. +.... ++... ...++..|+++..++.+.++. ++++. + |+ +++++|.+.
T Consensus 83 n~~~~~~~--~~~~~~~i~~~~-~~~~~-~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~--------~~t~lv~~~ 147 (361)
T 3m5u_A 83 AMIPMNLA--LNGVCEYANTGV-WTKKA-IKEAQILGVNVKTVASSEESNFDHIPRV--E-FS--------DNADYAYIC 147 (361)
T ss_dssp HHHHHHHC--CSSCEEEEECSH-HHHHH-HHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC--------TTSSEEEEE
T ss_pred HHHHHhcC--CCCeEEEEeCCH-HHHHH-HHHHHHcCCceEEEecccCcCCCcCChh--h-cC--------CCCCEEEEe
Confidence 99999887 566542 22222 22211 123556788888888777664 45555 3 66 788999885
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHH
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKE 222 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~ 222 (359)
+ .+|.||...+. + ++ +|+++++|.+|++|..+ .... ..|++++|.||++| |.| |+++.+++
T Consensus 148 ~-~e~~tG~~~~~--i------~~-~~~~~~vD~~q~~g~~~---id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~ 209 (361)
T 3m5u_A 148 S-NNTIYGTQYQN--Y------PK-TKTPLIVDASSDFFSRK---VDFS----NIALFYGGVQKNAG-ISGLSCIFIRKD 209 (361)
T ss_dssp S-EETTTTEECSS--C------CC-CSSCEEEECGGGTTSSC---CCCT----TEEEEEEETTTTSS-CTTCEEEEEEHH
T ss_pred C-CCCCcceeCCc--c------cc-cCCEEEEEcccccCCCC---CCcc----cCCEEEEechhccC-CCccEEEEEcHH
Confidence 4 45578998662 2 22 49999999999776553 1221 36899999999997 777 99999988
Q ss_pred HHHHHHH--------HHH----hhC-CCcchhHHHHH-HHHHHHH-H-hHHHHhhhHHHHHHHHHHHHhcCCCc-eEecC
Q 018243 223 FIKKARR--------LRK----TLG-GGMRQVGVLCA-AALVALQ-E-NVLVMLDGDHKKAKLLAEGLNQLKGL-RVDVD 285 (359)
Q Consensus 223 ~~~~~~~--------~~~----~~~-~~~~~~~~~~~-~~~~~l~-~-~~~~~~~~~~~~~~~l~~~l~~~~g~-~~~~~ 285 (359)
+.+.+.. +.. ... ++.....+... .++..+. . ..+.+.++..++++++++.|++++++ ....+
T Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~ 289 (361)
T 3m5u_A 210 MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD 289 (361)
T ss_dssp HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC
T ss_pred HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC
Confidence 8776542 111 111 11111122111 1122222 3 36657778888999999999999666 54322
Q ss_pred C-cc-ceEEEEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 286 A-VE-TNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 286 ~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+ .. ..++.|.++...+.+ .++...|.++||.+..+.. +.+|++++..++++|++.+++.|+++.++
T Consensus 290 ~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 290 KKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 2 12 346778877411234 4788899999999866532 46999999999999999999999988765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=203.84 Aligned_cols=307 Identities=15% Similarity=0.127 Sum_probs=209.8
Q ss_pred CccCCChHHHHHHHHHHHHhCCCCeEEcCCch-HHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec
Q 018243 32 DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT-MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN 110 (359)
Q Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt-~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 110 (359)
+...+.....++++.+|++||.+.+++++||+ .|+..++.+++ ++||+|++++++|.+.+. + ..+.|+++++++.
T Consensus 189 ~L~~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~-~--l~lsGa~pv~v~~ 264 (715)
T 3n75_A 189 SLLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTH-L--MMMSDVTPIYFRP 264 (715)
T ss_dssp BTTTTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHH-H--HHHSCCEEEEECC
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHH-H--HHHcCCEEEEEec
Confidence 34455677899999999999999999888885 78888888888 599999999999999886 4 6788999998864
Q ss_pred CC-CCC----C-----CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccc
Q 018243 111 NQ-DGT----M-----DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARI 180 (359)
Q Consensus 111 ~~-~~~----~-----~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 180 (359)
.. ++. + |+++|+++++++++. ..+++++++++ |++|.+++ +++|.++|++++ +++|+||+
T Consensus 265 ~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~---k~p~~vivt~p--n~~G~v~d---l~~I~ela~~~~--livDEAH~ 334 (715)
T 3n75_A 265 TRNAYGILGGIPQSEFQHATIAKRVKETPNA---TWPVHAVITNS--TYDGLLYN---TDFIKKTLDVKS--IHFDSAWV 334 (715)
T ss_dssp CBCTTCCBCCCCGGGGSHHHHHHHHHHSTTC---CSCSEEEEESS--CTTSEEEC---HHHHHHHCCCSE--EEEECTTC
T ss_pred cccccccccCcccccCCHHHHHHHHhhCcCc---cCceEEEEECC--CCCCccCC---HHHHHHHhCcCc--EEEccccc
Confidence 32 232 3 899999999853110 12347777666 59999998 788888887663 79999987
Q ss_pred cchhhhcCch-hHhhhc--CccEE---EEeccccCCCc-eeeEEecCHHH-HHHHHHHHHhhCCCcchhHHHHHHHHHHH
Q 018243 181 FNAAVALGVP-VRRLVQ--AADSA---SVCLSKGLGAP-VGSVIVGSKEF-IKKARRLRKTLGGGMRQVGVLCAAALVAL 252 (359)
Q Consensus 181 ~~~~~~~~~~-~~~~~~--~~d~~---~~s~~K~~g~~-~gg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (359)
.+........ ...+.. .+|++ +.|+||+++++ .||++..++++ .+.++....... +++++....++...++
T Consensus 335 ~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~-STSpsy~~~AsldaA~ 413 (715)
T 3n75_A 335 PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHT-TTSPHYGIVASTETAA 413 (715)
T ss_dssp TTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTS-CSSCCHHHHHHHHHHH
T ss_pred cccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhc-CCCchHHHHHHHHHHH
Confidence 5542211111 112221 26755 67999999886 45777765442 223333333333 3444555555555555
Q ss_pred HH----hHHHHhhhHHHHHHHHHHHHhcCCC------ceEecCCc----------------------------cceEEEE
Q 018243 253 QE----NVLVMLDGDHKKAKLLAEGLNQLKG------LRVDVDAV----------------------------ETNIVYF 294 (359)
Q Consensus 253 ~~----~~~~~~~~~~~~~~~l~~~l~~~~g------~~~~~~~~----------------------------~~~~~~~ 294 (359)
+. .-++++++..++++++++.|+++++ +.++.+.. ...-+.+
T Consensus 414 ~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i 493 (715)
T 3n75_A 414 AMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTL 493 (715)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEE
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEE
Confidence 22 2223778888899999999887643 33322110 0111444
Q ss_pred Eeccc--------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 295 EITED--------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 295 ~~~~~--------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.- .|+.+..+.+.|+++||.+...+...+-+-++.+.+++++++++++|.++-+.+
T Consensus 494 ~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 494 LTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp ECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44321 145678899999999999988788888888888999999999999998876544
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-28 Score=215.68 Aligned_cols=331 Identities=14% Similarity=0.088 Sum_probs=222.6
Q ss_pred cccccccCCCC----CChHHHHHHHHHcCCCCCCcc-CCChHHHHHHHHHHHHh-CCCCeEEcCCchHHHHHHHHHhhh-
Q 018243 3 TRTVDLRSDTV----TKPTEAMRAAMASAEVDDDVL-MHDPTAFRLETEMAKVM-GKEAGLFVPSGTMGNLISVLVHCE- 75 (359)
Q Consensus 3 ~~~id~~~~~~----~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~l~~~~~- 75 (359)
.++|||.++.. ...+|.+.+++.+.......+ ...+...++++.|++++ +.+.+++++||++|+..++..+..
T Consensus 100 ~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~ 179 (465)
T 2yky_A 100 HAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAI 179 (465)
Confidence 35799988754 234599999998866543222 24577789999999999 666778999999999999988643
Q ss_pred hcCCeEEecCCCcceeecccccc--ccCCc--cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 76 TRGSEVILGDNSHIHIYENGGIS--TIGGV--HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 76 ~~g~~vl~~~~~~~~~~~~~~~~--~~~g~--~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
..+++|++.+++|..... +... ...|+ .++.++.+ |++.|++.+++.. +++++|++++.++| +|
T Consensus 180 tgr~~ii~~~~~yHG~~~-~~~sg~~~~g~~~~~~~~~~~-----d~~~l~~~l~~~~-----~~~aavi~epv~~~-~G 247 (465)
T 2yky_A 180 TGRKTVLAFDGGYHGGLL-NFASGHAPTNAPYHVVLGVYN-----DVEGTADLLKRHG-----HDCAAILVEPMLGA-GG 247 (465)
Confidence 244778887777644332 1110 11233 23333433 7889998887421 46889999877664 78
Q ss_pred ee-cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH
Q 018243 152 RC-LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR 229 (359)
Q Consensus 152 ~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~ 229 (359)
.. .+.+++++|+++|++||+++|+||+|. +... .......+...+|++ +++|++|++.. |++++++++++.+..
T Consensus 248 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 248 CVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-GGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDP 323 (465)
Confidence 54 567999999999999999999999987 4211 111111111134543 78899986333 788899999888765
Q ss_pred --HH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCC---CceEecCCccceEEEEEeccch--
Q 018243 230 --LR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLK---GLRVDVDAVETNIVYFEITEDS-- 300 (359)
Q Consensus 230 --~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~-- 300 (359)
.. ...+.++..+++.++++..+++...+ ...++..++.+++++.|+++. ++... .+..+.++++.+..+.
T Consensus 324 ~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~g~G~~~~i~~~~~~~~ 402 (465)
T 2yky_A 324 ARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQ-FTGLGSLGTIHFSRAPIR 402 (465)
Confidence 12 12445556677777777777754322 356677777888888887651 22111 2346777887765310
Q ss_pred ---------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 ---------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 ---------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
......+.+.|.++||.+.|.+... ++..++++++++++++|+++++++.
T Consensus 403 ~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 403 SAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 0125678889999999998765332 4447999999999999999998764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-23 Score=182.35 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHhCCCCe---EEcCCchHHHHHHHHHhhhh---cCCeEEecCCCcceeeccccccccCCccceeeec--
Q 018243 39 TAFRLETEMAKVMGKEAG---LFVPSGTMGNLISVLVHCET---RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN-- 110 (359)
Q Consensus 39 ~~~~l~~~la~~~~~~~~---~~~~~gt~a~~~~l~~~~~~---~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~-- 110 (359)
....+...+.+++|.+.+ ++++++|.++.+++.+++.. +++.|++++.+|.+.++ + +.+.|+.++.++.
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~k-A--l~l~Gl~p~~v~~~~ 175 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK-S--MVTAGFEPVVIENVL 175 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH-H--HHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHH-H--HHHcCCeeEEEEeee
Confidence 345666777788898865 67777764555555544421 27889999999999987 4 7788998888843
Q ss_pred -CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 111 -NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 111 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
++.+.+|++.|+++|++++ .+..++++.++.++.+|.+- ++++|+++|++||+++|||+||+.........
T Consensus 176 ~~~~~~id~~~le~aI~~~~-----~~~~~~Vv~t~t~~g~g~~d---dl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l 247 (450)
T 3bc8_A 176 EGDELRTDLKAVEAKIQELG-----PEHILCLHSTTACFAPRVPD---RLEELAVICANYDIPHVVNNAYGLQSSKCMHL 247 (450)
T ss_dssp ETTEEECCHHHHHHHHHHHC-----GGGEEEEEEESSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred cCccCCcCHHHHHHHHHhcC-----CCCEEEEEEECCcCCCceec---CHHHHHHHHHHCCCeEEEECCCchhhhhhHhH
Confidence 4568899999999998531 12334444355554444543 59999999999999999999964322221111
Q ss_pred hhHhhh-cCccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-HHhHHHHhhhHHH
Q 018243 190 PVRRLV-QAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL-QENVLVMLDGDHK 265 (359)
Q Consensus 190 ~~~~~~-~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~ 265 (359)
....+. .++|+++.|.||+++.|.+ +++.. +++..+++... +.+..+..+.+..+..+..+ .+...+..++..+
T Consensus 248 ~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~--~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~ 325 (450)
T 3bc8_A 248 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM--YPGRASASPSLDVLITLLSLGCSGYRKLLKERKE 325 (450)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH--hhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 3799999999999999977 55554 77776665332 21222222233333333333 2233345666788
Q ss_pred HHHHHHHHHhcCC---CceEecCCccceEEEEEecc---chHHHHHHHHHHHHhcC------------------------
Q 018243 266 KAKLLAEGLNQLK---GLRVDVDAVETNIVYFEITE---DSKLYAACLLKKLEEHG------------------------ 315 (359)
Q Consensus 266 ~~~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g------------------------ 315 (359)
+++++++.|++++ +..+...+..+.-..+.+.. ....+..++.-.+...|
T Consensus 326 ~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~g 405 (450)
T 3bc8_A 326 MFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFM 405 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTT
T ss_pred HHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcC
Confidence 8899999998876 77664332111122232321 00125556666665444
Q ss_pred ceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 316 VLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 316 i~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
|.+...+...+-+.++.+.+++++++++++|+++.+++++++.
T Consensus 406 i~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~~ 448 (450)
T 3bc8_A 406 SHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQT 448 (450)
T ss_dssp TTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2222334566888888899999999999999999988877654
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=176.04 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=190.6
Q ss_pred HhCCCCe---EEcCCchHHHHHHHHHhhhh---cCCeEEecCCCcceeeccccccccCCccceeeec---CCCCCCCHHH
Q 018243 50 VMGKEAG---LFVPSGTMGNLISVLVHCET---RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN---NQDGTMDIDL 120 (359)
Q Consensus 50 ~~~~~~~---~~~~~gt~a~~~~l~~~~~~---~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~~~~~ 120 (359)
.+|.+.+ ++++++|.++.+.+++.+.. .+++|++++.+|.+.++ + ..+.|+++++++. ++...+|++.
T Consensus 128 ~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~k-A--liL~Gl~Pv~V~p~~d~~~~~id~e~ 204 (501)
T 3hl2_A 128 LAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK-S--MITAGFEPVVIENVLEGDELRTDLKA 204 (501)
T ss_dssp HTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH-H--HHHTTCEEEEECEEEETTEEEECHHH
T ss_pred HcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHH-H--HHHcCCeEEEEeeeecccccCCCHHH
Confidence 3487754 45555555666666666642 24899999999999998 4 7788999999854 3457789999
Q ss_pred HHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcC-cc
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQA-AD 199 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~-~d 199 (359)
++++|+++. .+..++++.+++.+..+.+ +++++|+++|++||++++||+||+....+....+...+..+ +|
T Consensus 205 le~aI~e~g-----a~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 205 VEAKVQELG-----PDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp HHHHHHHHC-----GGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcC-----CCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 999998631 1333333334444322333 35999999999999999999997543322222222223335 99
Q ss_pred EEEEeccccCCCceeeEEe--cCHHHHHHHHHHHHhhCCCcchhHHH-HHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHh
Q 018243 200 SASVCLSKGLGAPVGSVIV--GSKEFIKKARRLRKTLGGGMRQVGVL-CAAALVAL-QENVLVMLDGDHKKAKLLAEGLN 275 (359)
Q Consensus 200 ~~~~s~~K~~g~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~ 275 (359)
+++.|.||++-.|.||.++ .++++++++ ...+-++.+.++.+ ..+.+..+ .+...+.+++..+++++|++.|+
T Consensus 277 ~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~ 353 (501)
T 3hl2_A 277 AFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK 353 (501)
T ss_dssp EEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeecCceEEEeCCHHHHHHH---HHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999889875343 367777765 33332222333333 33333333 33344588888899999999998
Q ss_pred cCC---CceEecCCccceEEEEEeccc---hHHHHHHHHHHHHhcCce---eccCC---------------------CcE
Q 018243 276 QLK---GLRVDVDAVETNIVYFEITED---SKLYAACLLKKLEEHGVL---VMPES---------------------STR 325 (359)
Q Consensus 276 ~~~---g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~---~~~~~---------------------~~~ 325 (359)
++. |-++...+...-.+.+.+... .+....++-..|..++|- +++.+ ..+
T Consensus 354 ~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~y 433 (501)
T 3hl2_A 354 KLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAY 433 (501)
T ss_dssp HHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCE
T ss_pred HHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchH
Confidence 852 444432221222244555431 112466888888777663 33321 235
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 326 VRIVVHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 326 lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
+-++...+++++|++.++++|+++++++.++.
T Consensus 434 l~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 434 LNAASAIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888889999999999999999999987654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=185.01 Aligned_cols=341 Identities=17% Similarity=0.148 Sum_probs=212.5
Q ss_pred ccccccCC----CCCChHHHHHHHHHcCCCC--C--CccCCChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSD----TVTKPTEAMRAAMASAEVD--D--DVLMHDPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~----~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~~ 72 (359)
++|||.++ +....+|++.+++.+.... + ..+...+...++.+.+++++..+ ..++++||++|+..+++.
T Consensus 65 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~Alkl 144 (456)
T 4atq_A 65 SFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKV 144 (456)
T ss_dssp EEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHH
T ss_pred EEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHH
Confidence 57888776 3445568888888764322 1 12233566678888999988643 457889999999999998
Q ss_pred hhhhcC-CeEEecCC-CcceeeccccccccCC-------------ccceeeecCC-----CCC-CCHHHHHHHhcCCCCC
Q 018243 73 HCETRG-SEVILGDN-SHIHIYENGGISTIGG-------------VHPRTVKNNQ-----DGT-MDIDLIEAAIRDPKGE 131 (359)
Q Consensus 73 ~~~~~g-~~vl~~~~-~~~~~~~~~~~~~~~g-------------~~~~~v~~~~-----~~~-~~~~~l~~~l~~~~~~ 131 (359)
+....+ .+|+.... +|..+.. + ....+ ..+..++.+. ... -+.+.+++.++.....
T Consensus 145 Ar~~t~r~~ii~~~~~yHG~t~~--a-ls~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 221 (456)
T 4atq_A 145 ARLATGRDAVVAFDHAYHGRTNL--T-MALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ 221 (456)
T ss_dssp HHHHHCCCEEEEETTCCCCSSHH--H-HHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhhcCCeEEEEecccCCcccc--c-cccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHh
Confidence 875444 35665444 4443321 1 11111 1122232211 111 1233333333211000
Q ss_pred ccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCC
Q 018243 132 IVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLG 210 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g 210 (359)
.+..++.+|++++...+ +|. ..+.+++++++++|++||+++|+||++..............+.-.+|+++++ |.+|
T Consensus 222 ~~~~~iAAvivEPiqg~-gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lg 298 (456)
T 4atq_A 222 IGGDQVAAIIIEPIQGE-GGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIA 298 (456)
T ss_dssp TCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGG
T ss_pred hcCCceEEEEeccccCC-CCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hccc
Confidence 11157999999999885 455 5667999999999999999999999985433321111222233367877665 5554
Q ss_pred --CceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC----CC--ce
Q 018243 211 --APVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL----KG--LR 281 (359)
Q Consensus 211 --~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~----~g--~~ 281 (359)
.|. |.+++++++.+.+.. ...+.|+..+++.++++...++...+ +..++..+..+++.+.|+++ +. -.
T Consensus 299 gg~P~-~av~~~~~i~~~~~~--~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~ 375 (456)
T 4atq_A 299 GGLPL-SAITGRADLLDAVHP--GGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375 (456)
T ss_dssp TTSSC-EEEEEEHHHHTTSCT--TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CcCCc-eeeEecHHHHhcccc--cCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 344 446677777766532 23567777788888899888876544 24455556666666666543 21 01
Q ss_pred Ee-cCCccceEEEEEeccc-----hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 282 VD-VDAVETNIVYFEITED-----SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 282 ~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+. .-...+.++.+.+..+ .......+.+.+.++|+.+.+.+ .+.||+.++..++++++++++++|+++++..
T Consensus 376 ~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 376 VVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 11 0123566666766431 12346688999999999987654 4689999999999999999999999998753
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-22 Score=179.32 Aligned_cols=340 Identities=15% Similarity=0.074 Sum_probs=218.9
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCC----CccC-CChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDD----DVLM-HDPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++. ....+|++.+++.+..... ..++ ..+...+|.+.|++..+. +.+.+++||++|+..+++
T Consensus 67 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiK 146 (473)
T 4e3q_A 67 RRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVK 146 (473)
T ss_dssp CEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHH
T ss_pred CEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHH
Confidence 3678998863 2344588888887644321 1222 245667888889998864 457899999999999999
Q ss_pred Hhhh------hcC-CeEEecCC-CcceeeccccccccCCc-----------cceeeecC------CCCCC-------CHH
Q 018243 72 VHCE------TRG-SEVILGDN-SHIHIYENGGISTIGGV-----------HPRTVKNN------QDGTM-------DID 119 (359)
Q Consensus 72 ~~~~------~~g-~~vl~~~~-~~~~~~~~~~~~~~~g~-----------~~~~v~~~------~~~~~-------~~~ 119 (359)
.+.. +++ .+|+.... +|..+.. + ....+. ....++.+ ..+.. ..+
T Consensus 147 lAr~~~~~~g~~~r~~ii~~~~~yHG~t~~--a-~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 223 (473)
T 4e3q_A 147 MLWFLHAAEGKPQKRKILTRWNAYHGVTAV--S-ASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAR 223 (473)
T ss_dssp HHHHHHHHTTCTTCCEEEEETTCCCCSSHH--H-HHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcceEEEeeceECCCccc--c-ccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHH
Confidence 8753 122 34664444 4443321 1 111111 11112111 11111 123
Q ss_pred HHHHHhcCCCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCc
Q 018243 120 LIEAAIRDPKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAA 198 (359)
Q Consensus 120 ~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~ 198 (359)
++++.+.+. +..++.+|++++...+ +|+ ..+.+++++++++|++||+++|+||++..............+.-.+
T Consensus 224 ~l~~~i~~~----~~~~iAavi~EPiqg~-gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 224 ELEETIQRE----GADTIAGFFAEPVMGA-GGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHH----CGGGEEEEEECSSBST-TTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHhh----CCCceEEEEeCCccCC-CCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence 455555421 1157889999998885 455 4666999999999999999999999975433321212222233357
Q ss_pred cEEEEeccccCCC---ceeeEEecCHHHHHHHHHHHH-----hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHH
Q 018243 199 DSASVCLSKGLGA---PVGSVIVGSKEFIKKARRLRK-----TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKL 269 (359)
Q Consensus 199 d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 269 (359)
|++++ +|.+++ |. |.+++++++.+.+..... ..+.++..+++.+++++..++...+ ...++..+..++
T Consensus 299 Di~t~--~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~ 375 (473)
T 4e3q_A 299 DAIIS--SKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPR 375 (473)
T ss_dssp SEEEE--CGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred ChHHh--cccccCCCCCc-ccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHH
Confidence 76654 577743 33 557788898888754322 2467777788888888888876554 345566677777
Q ss_pred HHHHHhcC---CCceEecCCccceEEEEEeccc---------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHH
Q 018243 270 LAEGLNQL---KGLRVDVDAVETNIVYFEITED---------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISAN 337 (359)
Q Consensus 270 l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~ 337 (359)
|++.|+++ |.+.-. ...+.++-+.+..+ .......+.+.+.++|+.+.+.+ +.+|++++..++++
T Consensus 376 l~~~L~~l~~~~~v~~v--RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~ 452 (473)
T 4e3q_A 376 FEERLKHIAERPNIGEY--RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLG-QSVVLCPPFILTEA 452 (473)
T ss_dssp HHHHHHHHTTSTTEEEE--EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHH
T ss_pred HHHHHHHHhcCCCeeEE--eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHH
Confidence 87777664 444321 23555666665321 01235678899999999998775 68999999899999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018243 338 DVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 338 ~i~~~~~~l~~~~~~~~~~ 356 (359)
++|+++++|+++++++..+
T Consensus 453 eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 453 QMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988664
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=189.31 Aligned_cols=339 Identities=15% Similarity=0.134 Sum_probs=213.4
Q ss_pred ccccccCC----CCCCh-HHHHHHHHHcCCCC--CCcc--CCChHHHHHHHHHHHHhC---CCCeEEcCCchHHHHHHHH
Q 018243 4 RTVDLRSD----TVTKP-TEAMRAAMASAEVD--DDVL--MHDPTAFRLETEMAKVMG---KEAGLFVPSGTMGNLISVL 71 (359)
Q Consensus 4 ~~id~~~~----~~~~~-~~~~~~a~~~~~~~--~~~~--~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~~l~ 71 (359)
++|||.++ +.... +|++.+++.+.... +..+ ...+...+|.+.|+++++ .+.+++++||++|++.+++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK 460 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALK 460 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHH
Confidence 67899874 55666 79999998875432 2111 125667799999999997 4567899999999999999
Q ss_pred Hhhh----hc------------CCeEE-ecCCCcceeeccccccccCCcc----------------------------ce
Q 018243 72 VHCE----TR------------GSEVI-LGDNSHIHIYENGGISTIGGVH----------------------------PR 106 (359)
Q Consensus 72 ~~~~----~~------------g~~vl-~~~~~~~~~~~~~~~~~~~g~~----------------------------~~ 106 (359)
.++. +. ..+|| ....+|..++. + ....|.. +.
T Consensus 461 ~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~g--a-ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 537 (831)
T 4a0g_A 461 MAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLG--A-MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSW 537 (831)
T ss_dssp HHHHHHHHTTTC---------CCEEEEEETTCCCCSSHH--H-HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEE
T ss_pred HHHHHHHhhcCCCccccccccCccEEEEecCCcccCcee--e-eeccCccccccccccccccCCccccCCccccccCCce
Confidence 8831 11 12455 44555555442 1 2222210 00
Q ss_pred eeecCCCCC---------CC------------------HHHHHHHhcCCCCCccCCceeEEEEecc-ccCCCce-ecChh
Q 018243 107 TVKNNQDGT---------MD------------------IDLIEAAIRDPKGEIVYPTTRLICLENT-HANCGGR-CLSVE 157 (359)
Q Consensus 107 ~v~~~~~~~---------~~------------------~~~l~~~l~~~~~~~~~~~~~~v~i~~~-~~~ptG~-~~~~~ 157 (359)
.++.+..+. -+ .+.|++.|++.....+..++++|++++. .+ .+|+ ++|.+
T Consensus 538 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg-~gG~~~~~~~ 616 (831)
T 4a0g_A 538 NISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHG-AGGMHMVDPL 616 (831)
T ss_dssp EEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEET-TTTSEEECHH
T ss_pred EecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEeccccc-CCCCccCCHH
Confidence 111111000 01 2567777763210011257899999997 55 5555 56789
Q ss_pred hHHHHHHHHHHcCcEEEEecccccchhhhcCch--hHhhhcCccEEEEeccccCCCce-e-eEEecCHHHHHHHHHHHH-
Q 018243 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP--VRRLVQAADSASVCLSKGLGAPV-G-SVIVGSKEFIKKARRLRK- 232 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~g~~~-g-g~~~~~~~~~~~~~~~~~- 232 (359)
++++|+++|++||+++|+||++..... .|.. ...+...+|++ +++|.+++.. . |++++++++.+.+.....
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGR--tG~~fa~e~~gv~PDii--tlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWR--LGVETTTELLGCKPDIA--CFAKLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTT--TSBSSTHHHHSSCCSEE--EECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHcCCeEEEEcCcccccc--CCCchhhHhcCCCCcEE--EEecccccCccCcEEEEECHHHHHHHhccccc
Confidence 999999999999999999999753222 2322 22222346655 6779886431 2 668888888887643211
Q ss_pred ---hhCCCcchhHHHHHHHHHHHHHhHHH-HhhhHHHH--------HHHHHHHHhcCCCceEecCCccceEEEEEeccch
Q 018243 233 ---TLGGGMRQVGVLCAAALVALQENVLV-MLDGDHKK--------AKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 233 ---~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~--------~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
..+.++..+++.++++..+++...++ ..++..++ .+.+.+.+++.|.+... ...+.++.+.+..+.
T Consensus 693 ~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~v--rg~Gl~~~iel~~~~ 770 (831)
T 4a0g_A 693 KALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRV--VVIGTLFALELKADA 770 (831)
T ss_dssp GSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEE--EEETTEEEEEEC---
T ss_pred ccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeE--eecccEEEEEEecCc
Confidence 25667777888888888888654321 12222111 22455566667665543 246777777765310
Q ss_pred ------HHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 301 ------KLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 301 ------~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
...+..+.+.|.++||.+.|.+ ..+|+++++.++++++++++++|.++++++
T Consensus 771 ~~~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 771 SNSGYASLYAKSLLIMLREDGIFTRPLG-NVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ------CHHHHHHHHHHHHTTEECCCBT-TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cccccchHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1246678899999999998875 799999888999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-52 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 8e-46 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 8e-39 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 5e-34 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 3e-32 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 5e-25 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-24 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-14 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 3e-14 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 2e-12 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 1e-09 | |
| d1mdoa_ | 376 | c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty | 1e-09 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 3e-09 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 6e-07 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-06 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 8e-06 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-05 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 2e-05 | |
| d1b9ha_ | 384 | c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid syntha | 2e-04 | |
| d1y4ia1 | 397 | c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci | 2e-04 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 2e-04 | |
| d1o69a_ | 374 | c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, | 5e-04 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 0.001 |
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 174 bits (440), Expect = 4e-52
Identities = 152/345 (44%), Positives = 203/345 (58%), Gaps = 7/345 (2%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVTKPTE MR AMA AEV DDV DPT LE A+ GKEA LFVPSGTMG
Sbjct: 2 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 61
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N +S++ H + RG EVIL +SHI YE G ++ + GV P V +D +
Sbjct: 62 NQVSIMAHTQ-RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNG---AMDPDDVRK 117
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
I +P T LI +ENTH GGR + +E + IAK+HG+ +HIDGARIFNA++
Sbjct: 118 AIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 177
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLC 245
A GVPV+ ADS CLSKGL APVGSV+VG ++FI++AR+ RK LGGGMRQ G
Sbjct: 178 ASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG--V 235
Query: 246 AAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
AA + +V + + + G V+ + V+TN+V ++ K+ A
Sbjct: 236 LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRT-DNLKVNAH 294
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
++ L GVL S T +R+V H +S ND+ L+ F+K++
Sbjct: 295 GFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLF 339
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 160 bits (405), Expect = 8e-46
Identities = 54/345 (15%), Positives = 111/345 (32%), Gaps = 37/345 (10%)
Query: 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+DL +D+ T ++ A M + D+ + LE + ++ G + + G
Sbjct: 44 YIDLLTDSGTNAMSDKQWAGM---MIGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGR 100
Query: 64 MGNLISVLVHCETRGSEVILGDN-----SHIHIYENGGISTIGGVHPRTVKNNQDG-TMD 117
+ + + G V H + + N +D
Sbjct: 101 GAENLLSQLAIK-PGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDID 159
Query: 118 IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177
++ + I++ ICL T GG+ +S+ +V E+A +G+K+ D
Sbjct: 160 LNKLATLIKEKG----AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215
Query: 178 ARIFNAAVA------------LGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIK 225
R A + V + AD ++ K +G + + E +
Sbjct: 216 TRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMF 275
Query: 226 KARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGD-----HKKAKLLAEGLNQLKGL 280
A + + GM G L + A+ + + + K+ + L + L +
Sbjct: 276 SAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGVP 335
Query: 281 RVDVDA-----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
V+ ++ +T+D + E GV M
Sbjct: 336 IVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSME 380
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 141 bits (356), Expect = 8e-39
Identities = 58/354 (16%), Positives = 115/354 (32%), Gaps = 47/354 (13%)
Query: 6 VDLRSDTVTKPTEAMRAAM-ASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM 64
+DL +D+ T A+ +M A+ D+ + + L + + G + + G
Sbjct: 44 IDLLTDSGTG---AVTQSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRG 100
Query: 65 GNLISVLVHCETRGSEVILGDN-----SHIHIYENGGISTIGGVHPRTVKNNQD------ 113
I + V + R E L + S+ G S I G R V +
Sbjct: 101 AEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVR 160
Query: 114 ----GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH 169
G D++ +E I + I T + GG+ +S+ ++ IAKK+
Sbjct: 161 YDFKGNFDLEGLERGIEEVG----PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY 216
Query: 170 GLKLHIDGARIFNAAVALGVP------------VRRLVQAADSASVCLSKGLGAPVGSVI 217
+ + +D AR A + R + AD ++ K P+G ++
Sbjct: 217 DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLL 276
Query: 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVM--------LDGDHKKAKL 269
+ +TL A++ + + L + +
Sbjct: 277 CMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQY 336
Query: 270 LAEGLNQLKGLRVDVD----AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM 319
L +GL ++ + V+ + I D A + + G+ +
Sbjct: 337 LVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAV 390
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 128 bits (322), Expect = 5e-34
Identities = 55/354 (15%), Positives = 109/354 (30%), Gaps = 46/354 (12%)
Query: 5 TVDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGT 63
+DL +D+ T ++ AAM D+ + L+ + ++ + + G
Sbjct: 44 YIDLLTDSGTNAMSDHQWAAM---ITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGR 100
Query: 64 MGNLISVLVHCETRGSEVILGDNSHI----HIYENGGISTIGGVHPRTVK---------- 109
I V + + N H + G +
Sbjct: 101 GAENILFPVLLK-YKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETY 159
Query: 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKH 169
++ G DI ++ I + I T + GG+ +S+ V EIAK+H
Sbjct: 160 DDWKGDFDIKKLKENIA----QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215
Query: 170 GLKLHIDGARIFNAAVALGVP------------VRRLVQAADSASVCLSKGLGAPVGSVI 217
G+ + +D AR A + + + + AD+ ++ K +G ++
Sbjct: 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLV 275
Query: 218 VGSKEF-IKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKK---------- 266
I R R G G L + A+ + + + ++
Sbjct: 276 AIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLG 335
Query: 267 AKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
+L G+ V+ + +I D A + E GV +
Sbjct: 336 DRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVE 389
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 121 bits (303), Expect = 3e-32
Identities = 63/347 (18%), Positives = 124/347 (35%), Gaps = 14/347 (4%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDD-DVLMHDPTAFRLETEMAKVMGKEAGL-FVPSGTM 64
SD + + + A+ D +++ + ++ ++ + VP+GT
Sbjct: 6 GFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTA 65
Query: 65 GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
N + + + SHI+ E G + +DI +
Sbjct: 66 ANALCLSAMTP-PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRER 124
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
R+ G++ + + L + +++G++ K L LH+DG+R NA
Sbjct: 125 TREKVGDVHTTQPACVSITQATEVGSIYTL--DEIEAIGDVCKSSSLGLHMDGSRFANAL 182
Query: 185 VALGVPVRRLVQAAD--SASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVG 242
V+LG + A + S +K ++++ + + RK G ++
Sbjct: 183 VSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMR 242
Query: 243 VLCAAALVALQENVLV-MLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSK 301
L A L +++ + + A+ LA+GL L G+ V E NI++ +
Sbjct: 243 FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGG-TEANILFCRLDSA-- 299
Query: 302 LYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348
LLK G VR V +A DV + L+ +
Sbjct: 300 -MIDALLKA--GFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRL 343
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 103 bits (256), Expect = 5e-25
Identities = 45/402 (11%), Positives = 97/402 (24%), Gaps = 88/402 (21%)
Query: 31 DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIH 90
D+L+H+ A E A+V + FV G+ +V + G V+ N+H
Sbjct: 59 GDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKS 118
Query: 91 IYENGGISTIGGVHPRTVKNNQDG--------TMDIDLIEAAIR--DPKGEIVYPTTRLI 140
+Y + G N G D I DP+ RL
Sbjct: 119 VYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLA 178
Query: 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA--------VALGVPVR 192
++ + ++ V + + D A + L +
Sbjct: 179 VIQLGTYDG-----TIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDL 233
Query: 193 RLVQAADSASVCLSKGLGAPVGSVIVGSKE-------------FIKKARRLRKTLGGGMR 239
+ K + + K+ + L +
Sbjct: 234 GPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYP 293
Query: 240 QVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV---------------DV 284
L A + E + + L + + D
Sbjct: 294 MYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDT 353
Query: 285 DAVETNIVYFEITE-------------------------------------DSKLYAACL 307
+ + NI Y+ + D + A +
Sbjct: 354 EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIV 413
Query: 308 LKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349
L +HG++ + ++ + ++ ++ ++
Sbjct: 414 ANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQL 455
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 100 bits (248), Expect = 2e-24
Identities = 47/346 (13%), Positives = 105/346 (30%), Gaps = 11/346 (3%)
Query: 7 DLRSDTVTKPTEAMRAAMASAEVDDDVLM-HDPTAFRLETEMAKVMGKEA--GLFVPSGT 63
+D + MA + D + + +++ + F+ GT
Sbjct: 3 SFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGT 62
Query: 64 MGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEA 123
NLI+ + VI HI +E G I G + +
Sbjct: 63 QTNLIACSLALRPW-EAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESAL 121
Query: 124 AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNA 183
+ +L+ + NT S L L +
Sbjct: 122 HENRSEH---MVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALS 178
Query: 184 AVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243
+ + + + + D + +K G ++I+ + AR L K G M + +
Sbjct: 179 SPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWL 238
Query: 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303
L V +++N+ L K + + + G+R+ +N ++ +
Sbjct: 239 LGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRL-AWPSASNQLFPILENTM--- 294
Query: 304 AACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349
A L + + V + + + +R+ + H + +++
Sbjct: 295 IAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 71.9 bits (175), Expect = 2e-14
Identities = 57/328 (17%), Positives = 102/328 (31%), Gaps = 28/328 (8%)
Query: 41 FRLETEMAKVMG-KEAGLFVPSGTMGNLISVL--VHCETRGSEVILGDNSHIHIYENGGI 97
++ K +G + P T ++ L + + VI SH +
Sbjct: 116 NKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSF 175
Query: 98 STIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157
+ TV + + ++ IE AI+ C+ +T R +
Sbjct: 176 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE-----LGNRPCVLSTLTFFPPRN--SD 228
Query: 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGS-- 215
+ +I + + + I+GA L + D+ K L P+G
Sbjct: 229 DIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGL 288
Query: 216 VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLN 275
V EFIK+ V + L +N L ++ KLL E LN
Sbjct: 289 VYSTDAEFIKEISLSYPGRASATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 347
Query: 276 QL---KGLRVDVDAVETNIVYFEITEDSKLYAACLL----------KKLEEHGVLVMPES 322
L G + +D + D AA L KK + G +
Sbjct: 348 DLSKKTGGKF-LDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTY 406
Query: 323 STR-VRIVVHHQISANDVHYTLSCFQKI 349
+ + + + D+ ++S +KI
Sbjct: 407 THDYIVMNAAIGVRTEDIVNSVSKLEKI 434
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.6 bits (171), Expect = 3e-14
Identities = 42/358 (11%), Positives = 109/358 (30%), Gaps = 38/358 (10%)
Query: 17 TEAMRAAMASAEV-----------DDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
TE R A+ D + P + ++ K +G +
Sbjct: 15 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREA 74
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
+ + + + V++ +N H Y + + + V I E
Sbjct: 75 KFAVMHSLAK-KDAWVVMDENCHYSSYVAAERAGL---NIALVPKTDYPDYAITP-ENFA 129
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
+ + L + N G ++ + ++ ++ + L ++GA
Sbjct: 130 QTIEETKKRGEVVLALITYPDGNYG----NLPDVKKIAKVCSEYDVPLLVNGAYAIGRMP 185
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ----- 240
+ + G V+ +E+ + R + +
Sbjct: 186 VSLKEIGADFIVGSGHKSMAASG----PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCT 241
Query: 241 ---VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297
++ A + D + +KA+ A + +L ++ + ++++F
Sbjct: 242 ARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE 301
Query: 298 EDSKLYA------ACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349
++ L ++L+ + + TR + + +S +V Y L+ F++I
Sbjct: 302 VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEI 359
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 65.2 bits (158), Expect = 2e-12
Identities = 49/354 (13%), Positives = 99/354 (27%), Gaps = 61/354 (17%)
Query: 44 ETEMAKVMGKEAGLFVPSGTMGNLISVLV------------HCETRGSE------VILGD 85
E +A G+ G+ S + L+++L D
Sbjct: 130 EAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASD 189
Query: 86 NSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145
+H + IGGV + + ++ M ++ A+ K + P +
Sbjct: 190 QAHSSVERA---GLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF--FVVATLG 244
Query: 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RLVQAADSASVC 204
+C S + VG I + + LH+D A +A + V+ ADS +
Sbjct: 245 TTSCC----SFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFN 300
Query: 205 LSKGLGAPVGSVIVGSKEFIKKARRLR---------------------KTLGGGMRQVGV 243
K L + K + L G R +
Sbjct: 301 PHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSL 360
Query: 244 LCAAALVALQ-ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302
+ + + + + + Q V V +V F + L
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV-CAEVTLGLVCFRLKGSDGL 419
Query: 303 YAACLLKKLEEHGVLVMPESSTRVR-------IVVHHQISANDVHYTLSCFQKI 349
A LL+++ + + R+R + ++ + V + +
Sbjct: 420 NEA-LLERINSARKIHL--VPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGL 470
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 56.9 bits (136), Expect = 1e-09
Identities = 47/335 (14%), Positives = 89/335 (26%), Gaps = 32/335 (9%)
Query: 23 AMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI 82
+ S V ++H L A+ +G L SG N V E
Sbjct: 72 SGGSGHVSGYSVVHQALEEEL----AEWLGYSRALLFISGFAANQA---VIAAMMAKEDR 124
Query: 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICL 142
+ + H S R N+ + P +++
Sbjct: 125 IAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPC-----------PGQQMVVT 173
Query: 143 ENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSAS 202
E + G E ++ ++H L +D A G L +
Sbjct: 174 EGVFSMDGDSAPLAEIQ----QVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELL 229
Query: 203 VCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDG 262
V G+ ++ S + + L A +L D
Sbjct: 230 VVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDA 289
Query: 263 DHKKAK-LLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM-- 319
+K L+ ++ L + + I + ++S+ +KL + G V
Sbjct: 290 RREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLA--EKLRQQGCWVTAI 347
Query: 320 -----PESSTRVRIVVHHQISANDVHYTLSCFQKI 349
P + R+R+ + D+ L
Sbjct: 348 RPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Score = 56.5 bits (135), Expect = 1e-09
Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 20/190 (10%)
Query: 29 VDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88
+D + P LE ++ G + + V S T G I+++ G EVI +
Sbjct: 22 LDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTW 81
Query: 89 IHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148
+ + V ++ + + IEAAI P T+ I +
Sbjct: 82 VSTLNMIVLLGANPVMVDVDRDTL--MVTPEHIEAAIT--------PQTKAIIPVHYAGA 131
Query: 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKG 208
++ + +++G+ + D A G + A S K
Sbjct: 132 PADLD-------AIYALGERYGIPVIED-AAHATGTSYKGRHIGARGTAIF--SFHAIKN 181
Query: 209 LGAPVGSVIV 218
+ G ++V
Sbjct: 182 ITCAEGGIVV 191
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.7 bits (133), Expect = 3e-09
Identities = 43/290 (14%), Positives = 90/290 (31%), Gaps = 24/290 (8%)
Query: 42 RLETEMAKVMG---KEAGLFVPSGTMGNLISVLV---HCETRGSEVILGDNSHIHIYENG 95
L + K+ G + VP T +L + H + +I +++
Sbjct: 98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM 157
Query: 96 GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLS 155
+ V V + D+ +EA I++ ++CL +T A R
Sbjct: 158 VTAGFEPVVIENVLEGDELRTDLKAVEAKIQE------LGPEHILCLHSTTACFAPRV-- 209
Query: 156 VEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL-VQAADSASVCLSKGLGAPVG 214
+ + + I + + ++ A ++ + + + V D+ L K PVG
Sbjct: 210 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 269
Query: 215 S--VIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAE 272
+ ++ FI+ ++ + VL L +L + L+
Sbjct: 270 GAIIAGFNEPFIQDISKMYPGRASASPSLDVLI-TLLSLGCSGYRKLLKERKEMFVYLST 328
Query: 273 GLNQLKG------LRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGV 316
L +L L+ + + + I L L V
Sbjct: 329 QLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQV 378
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 48.6 bits (115), Expect = 6e-07
Identities = 43/269 (15%), Positives = 75/269 (27%), Gaps = 20/269 (7%)
Query: 58 FVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMD 117
G+ + G EVI+ Y G V + D
Sbjct: 96 VTVGGSQALFNLFQAILD-PGDEVIVLSPYW-VSYPEMVRFAGGVVVEVETLPEEGFVPD 153
Query: 118 IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177
+ + AI P T+ + + N+ N G E +++ +A +H L D
Sbjct: 154 PERVRRAIT--------PRTKALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD- 203
Query: 178 ARIFNAAVALGVPVRRLVQAADSASVC--LSKGLGAP---VGSVIVGSKEFIKKARRLRK 232
I+ + G A + +K +G G KE IK + +
Sbjct: 204 -EIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIG-YACGPKEVIKAMASVSR 261
Query: 233 TLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKL-LAEGLNQLKGLRVDVDAVETNI 291
+ + QE ++ + + L L L +
Sbjct: 262 QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAF 321
Query: 292 VYFEITEDSKLYAACLLKKLEEHGVLVMP 320
T ++L E GV V+P
Sbjct: 322 YVLMDTSPIAPDEVRAAERLLEAGVAVVP 350
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.0 bits (108), Expect = 4e-06
Identities = 45/325 (13%), Positives = 93/325 (28%), Gaps = 27/325 (8%)
Query: 15 KPTEAMRAAMASAEVDDDVLMHDPT----------AFRLETEMAKVMGKEAGLFVPSGTM 64
+ ++ A +D + + P A +L+ + + + V G
Sbjct: 38 DTPQHIKEYAKEA-LDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGAN 96
Query: 65 GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
+ L G EV++ + Y I G + +++D ++
Sbjct: 97 QAFLMGLSAFLKDGEEVLIPTPAF-VSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY 155
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA-RIFNA 183
+ D TR + + N+ N G L+ + + + + +H L + D F
Sbjct: 156 VTDK--------TRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY 206
Query: 184 AVALGVPVRRLVQAADSASVC--LSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGM 238
A + L + SK +G V S + + +
Sbjct: 207 DDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPV 266
Query: 239 RQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITE 298
+ A AL + V + + V ++ I +
Sbjct: 267 TFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRD 326
Query: 299 DSKLYAACLLKKLEEHGVLVMPESS 323
L+E V V+P S+
Sbjct: 327 TGLTSKKFSELMLKEARVAVVPGSA 351
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 44.9 bits (105), Expect = 8e-06
Identities = 32/286 (11%), Positives = 69/286 (24%), Gaps = 31/286 (10%)
Query: 56 GLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT 115
G L + + V + + + + + + +
Sbjct: 108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRG 167
Query: 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHI 175
+D+ + + + + + H N G + E + + K+ L
Sbjct: 168 LDLQGFLSDLENA-----PEFSIFVLHACAH-NPTGTDPTPEQWKQIASVMKRRFLFPFF 221
Query: 176 DGA----------RIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIK 225
D A + A L A + +V+ + I
Sbjct: 222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSIL 281
Query: 226 KARRLRKTLGGGMRQVGVLCAAALVA-----------LQENVLVMLDGDHKKAKLLAEGL 274
+ + + A +VA NV M D L L
Sbjct: 282 RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341
Query: 275 NQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
L + + I F T + L+ + + ++P
Sbjct: 342 EAL-KTPGTWNHITDQIGMFSFTGLNPKQVEYLI---NQKHIYLLP 383
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 49/272 (18%), Positives = 88/272 (32%), Gaps = 21/272 (7%)
Query: 57 LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM 116
L G +L E G EVI+ Y G +
Sbjct: 94 LVTNGGKQSIFNLMLAMIE-PGDEVIIPAPFW-VSYPEMVKLAEGTPVILPTTVETQFKV 151
Query: 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID 176
+ I AI P T+L+ NT +N G + + ++ ++A + GL + D
Sbjct: 152 SPEQIRQAIT--------PKTKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202
Query: 177 GA-RIFNAAVALGVPVRRLVQAADSASVC---LSKGLGAP---VGSVIVGSKEFIKKARR 229
A + + A SV +K VG + G +K A +
Sbjct: 203 EIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVG-FLAGPVPLVKAATK 261
Query: 230 LRKTLGGGMRQVG-VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288
++ + AA Q+ V ML ++ + + + LN + GL
Sbjct: 262 IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC-PKPDG 320
Query: 289 TNIVYFEITEDSKLYAACLLKKLEEHGVLVMP 320
++ I + + + L++H V +P
Sbjct: 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVP 352
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 44.1 bits (103), Expect = 2e-05
Identities = 47/383 (12%), Positives = 98/383 (25%), Gaps = 63/383 (16%)
Query: 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM-----------GKEAGLFVPSGTMGN 66
+ M ++ +D + P + ++ ++ G+ G +
Sbjct: 72 KLMDLSINKNWIDKEEY---PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128
Query: 67 LISVLVHCET-----------RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT 115
++ + ++ I ++ +
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVE--LREIPMRPGQLF 186
Query: 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHI 175
MD + A + +V T+ + + + +HI
Sbjct: 187 MDPKRMIEACDENTIGVV------PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 240
Query: 176 DGARIFNAAVALGVPVRRLVQA---ADSASVCLSKGLGAPVGS--VIVGSKEFIKKARRL 230
D A P S S K AP+G VI +E + +
Sbjct: 241 DAA-SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVF 299
Query: 231 RKTLGGG------------MRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLK 278
GG QV L +E + + ++ A LA+ + +L
Sbjct: 300 NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG 359
Query: 279 GLRVDVDAVET---NIVYFEIT--EDSKLYAACLLKKLEEHGVLV----MPESSTRV--- 326
V F++ ED L ++L G V + +T +
Sbjct: 360 PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVM 419
Query: 327 RIVVHHQISANDVHYTLSCFQKI 349
RI+ + L ++
Sbjct: 420 RIMCRRGFEMDFAELLLEDYKAS 442
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 3/100 (3%)
Query: 18 EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETR 77
+ A+ M E E A G L V +GT +++ V
Sbjct: 17 NGLVRALEQ---GQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGP 73
Query: 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMD 117
G+EVI+ + I + V + +
Sbjct: 74 GTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPE 113
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 24/204 (11%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97
PT LE ++A + EAGL SG ++L C+ +G ++ + +
Sbjct: 63 PTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ-QGDHIVSASAIYGCTHA---- 117
Query: 98 STIGGVHPRT-VKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
+ P+ + + I AA+R P T+++ +E LS+
Sbjct: 118 -FLSHSMPKFGINVRFVDAGKPEEIRAAMR--------PETKVVYIE----TPANPTLSL 164
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
++V IA + G L +D + P++ + G G +G +
Sbjct: 165 VDIETVAGIAHQQGALLVVDNT---FMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGI 221
Query: 217 IVGSKEFIKKAR--RLRKTLGGGM 238
IVG +EFI +AR L+ GG M
Sbjct: 222 IVGKQEFIDQARFVGLKDITGGCM 245
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 38 PTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGI 97
PT LE MA + G EAGL + SG S L G EV+LG+ + +
Sbjct: 59 PTLNLLEARMASLEGGEAGLALASGMGAI-TSTLWTLLRPGDEVLLGNTLYGCTFAFLHH 117
Query: 98 STIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157
+ D+ +EAA+ P TR+I E + + +
Sbjct: 118 GIGEFGVKLRHVD----MADLQALEAAMT--------PATRVIYFE----SPANPNMHMA 161
Query: 158 YTDSVGEIAKKHGLKLHIDG 177
V +IA+KHG + +D
Sbjct: 162 DIAGVAKIARKHGATVVVDN 181
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} Length = 374 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89
R E + E L + S T +++ V + V+ + I
Sbjct: 25 RFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFI 72
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 53/340 (15%), Positives = 98/340 (28%), Gaps = 44/340 (12%)
Query: 34 LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLIS--VLVHCETRGSEVILGDNSHIHI 91
++ E + K+ L + +G + + + +
Sbjct: 79 AFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFA 138
Query: 92 YENGGISTIGGVHPRTVKNNQDG------------TMDIDLIEAAIRDPKGEIVYPTTRL 139
N T+ + T + DG D+ +E A++DP
Sbjct: 139 AGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP-------NVAA 191
Query: 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD 199
+E G Y V E+ +H + D + G+ A D
Sbjct: 192 FMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD-------EIQTGLARTGRWLAVD 244
Query: 200 SASV-----CLSKGLGA-PVGSVIVGSKEFIKKARRLRK---TLGGGMRQVGVLCAAALV 250
+V L K L V + I + + T GG + C A+
Sbjct: 245 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNP----LGCRVAIA 300
Query: 251 ALQENVLVMLDGDHK-KAKLLAEGLNQLKGLRV-DVDAVETNIVYFEITEDSKLYAACLL 308
AL+ L + +L L +L V V + I E A +
Sbjct: 301 ALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGL-LNAIVIKETKDWDAWKVC 359
Query: 309 KKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348
+L ++G+L P +R I +++ ++ K
Sbjct: 360 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 399
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 100.0 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.98 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.97 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.97 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.97 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.97 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.97 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.97 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.97 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.97 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.96 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.96 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.96 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.96 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.96 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.96 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.96 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.96 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.96 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.95 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.95 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.95 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.95 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.95 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.95 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.95 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.95 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.95 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.95 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.95 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.95 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.95 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.94 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.94 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.94 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.94 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.94 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.94 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.94 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.93 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.93 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.93 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.93 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.93 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.92 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.92 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.92 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.92 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.92 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.92 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.92 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.92 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.91 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.91 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.9 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.9 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.88 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.81 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.8 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.78 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.75 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.67 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 82.84 |
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4e-37 Score=267.06 Aligned_cols=342 Identities=49% Similarity=0.754 Sum_probs=265.6
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEec
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILG 84 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~ 84 (359)
+|||.+|+.+.|+|++++||.++..++..|+.+|...+||+.+++++|.+.+++++|||+|+..++.+++ ++|+.+++.
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~-~~g~~~~~~ 79 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT-QRGDEVILE 79 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CcccccccCCCCCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-ccCCceecc
Confidence 5899999999999999999999887888899999999999999999999999999999999999999998 499999999
Q ss_pred CCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHH
Q 018243 85 DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGE 164 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~ 164 (359)
.+.|.+...........+..+..++. ..+..|++.+++.+.... ....++..++++...++++|.+++.+++.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 156 (343)
T d1m6sa_ 80 ADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRN--IHFPRTSLIAIENTHNRSGGRVVPLENIKEICT 156 (343)
T ss_dssp TTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSC--TTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred ccccceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhh--cccccccccccccccccCCceecCHHHHHHHHH
Confidence 99987765522222333434444433 345569999999988532 222567777887888889999999999999999
Q ss_pred HHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHH
Q 018243 165 IAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVL 244 (359)
Q Consensus 165 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (359)
+|+++|+++++|+++..+................+..+++.+|..++..++++...++.+......+...+.+.......
T Consensus 157 ~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (343)
T d1m6sa_ 157 IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVL 236 (343)
T ss_dssp HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHH
T ss_pred HHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhCcccccccchhHHH
Confidence 99999999999999866555433333333334556677777777776677778888888888877777777766655555
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCc
Q 018243 245 CAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESST 324 (359)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 324 (359)
.++.........+ ......++..++.+.+.++.+... ..+..++++++.++. .+.++.++.++|.++||.+.+.+..
T Consensus 237 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~a~~l~~~L~~~Gi~v~~~~~~ 313 (343)
T d1m6sa_ 237 AAAGIIALTKMVD-RLKEDHENARFLALKLKEIGYSVN-PEDVKTNMVILRTDN-LKVNAHGFIEALRNSGVLANAVSDT 313 (343)
T ss_dssp HHHHHHHHHHSST-THHHHHHHHHHHHHHHHHHTCBCC-GGGCCSSEEEEECTT-SSSCHHHHHHHHHHHTEECEEEETT
T ss_pred HHhhhhhhhhhHH-HHHHHHHHHHHhhhHHHHhccCcc-CCCCCceEEEEEeCC-CcccHHHHHHHHHHCCCEEecCCCC
Confidence 5554444443333 444555666777777777644443 334578899998875 3457889999999999999998899
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 325 RVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 325 ~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+|++++..+|++|+|+++++|+++++++
T Consensus 314 ~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 314 EIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=2.6e-37 Score=272.03 Aligned_cols=331 Identities=15% Similarity=0.178 Sum_probs=246.0
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhC----CC---CeEEcCC-chHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMG----KE---AGLFVPS-GTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~----~~---~~~~~~~-gt~a~~~~l~~~ 73 (359)
.+|||..+++.++. +.+++++.++.. +...|++..+..++++++++++. .. ..+++++ +++++..++.++
T Consensus 31 ~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~ 110 (388)
T d1j32a_ 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM 110 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH
Confidence 46999998877654 788888876543 34468888889999999998863 32 2255455 567777777777
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++||.|++++|+|..... ..+..|.+++.++.. .++.+|++++++.++ ++++++++.+| +||||
T Consensus 111 ~-~~gd~Vlv~~P~y~~~~~---~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~--------~~~~~~~~~~P-~NPTG 177 (388)
T d1j32a_ 111 I-EPGDEVIIPAPFWVSYPE---MVKLAEGTPVILPTTVETQFKVSPEQIRQAIT--------PKTKLLVFNTP-SNPTG 177 (388)
T ss_dssp C-CTTCEEEEESSCCTHHHH---HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC--------TTEEEEEEESS-CTTTC
T ss_pred h-CCCCEEEEcCCCcHHHHH---HHHHhcCeEEEEecccccccCCCHHHHHHhCC--------CCCeEEEECCC-CCCCC
Confidence 7 599999999999776543 366677788877543 456789999999998 78899988665 67999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc---CccEEEEeccccCCCcee--eEEecCHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ---AADSASVCLSKGLGAPVG--SVIVGSKEFIK 225 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~---~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~ 225 (359)
.+++.+++++|.++|+++|++||+||+|........ ..+...... ...++..|+||.|+.|+. ||+++++++++
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVK 257 (388)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHH
T ss_pred cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHH
Confidence 999999999999999999999999999744333211 112221111 122445599999986543 99999999999
Q ss_pred HHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHH
Q 018243 226 KARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKL 302 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
.+.........+.+. ..+.++...+ ++++++.++.+.++++.+.+.|++.+|+.+. .+.++.++|+.++. .+.
T Consensus 258 ~~~~~~~~~~~~~~~--~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~gg~~l~~~l~~-~~~ 333 (388)
T d1j32a_ 258 AATKIQGHSTSNVCT--FAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIAK-TGR 333 (388)
T ss_dssp HHHHHHHTTTCSCCH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC-CCCBTTEECCBCGG-GTC
T ss_pred HHHHhhhhccccccH--HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec-CCCceEEEEEECCC-CCC
Confidence 887766655554433 3333333344 3455557778888999999999998888874 45688899999875 234
Q ss_pred HHHHHHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 303 YAACLLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 303 ~~~~~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+..++.++| .++||.+.|+ .++++|++++ .+++++++++++|+++++.+
T Consensus 334 ~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 334 SSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence 667888877 7889999886 4678999994 78999999999999999875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.5e-37 Score=269.34 Aligned_cols=329 Identities=17% Similarity=0.159 Sum_probs=240.4
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhCC----C----CeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMGK----E----AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~----~----~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||..+++.+|. +.+++++.++.. +...|+...+..+||+.+++++.. + ..++++|+++++..++.++
T Consensus 32 ~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l 111 (382)
T d1b5pa_ 32 DLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI 111 (382)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh
Confidence 46999998887655 788888876543 345688888899999999998732 1 2245555567777778787
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++||.|++++|+|.... ..++..|.+++.++.. +++.+|++++++.++ ++++++++++| |||||
T Consensus 112 ~-~~gd~vl~~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--------~~~~~i~~~~P-~NPTG 178 (382)
T d1b5pa_ 112 L-DPGDEVIVLSPYWVSYP---EMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT--------PRTKALVVNSP-NNPTG 178 (382)
T ss_dssp C-CTTCEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC--------TTEEEEEEESS-CTTTC
T ss_pred C-CCCCEEEECCCCcHHHH---HHHHHhcCeEEEEecccccccCCCHHHHHHhCC--------CCCeEEEECCC-CCCcc
Confidence 7 59999999999977654 3477889899888644 346789999999887 78899988655 67999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARR 229 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~ 229 (359)
.+++.+++++|+++|++||++||+||+|....+.....+.........+++.|+||.|+.|+. ||+++++++++.+..
T Consensus 179 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~ 258 (382)
T d1b5pa_ 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMAS 258 (382)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHH
Confidence 999999999999999999999999999754333211112222211212444599999987643 999999999998877
Q ss_pred HHHhhCCCcchhHHHHHHHHH----HHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALV----ALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
.......+.+......+.... ..+...+..++.+.++++.+.+.+.+. |+.+. .+.+++++|+.++. ...+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~-~p~gg~~~~~~~~~-~~~~~~ 335 (382)
T d1b5pa_ 259 VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV-RPSGAFYVLMDTSP-IAPDEV 335 (382)
T ss_dssp HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSBTTEEEEECTT-TCSSHH
T ss_pred HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEe-cCCceEEEeEeCCC-CCCCHH
Confidence 766655554333222222211 123444445566777788888888887 88774 45688999999865 234677
Q ss_pred HHHHHHHhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 306 CLLKKLEEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 306 ~~~~~l~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+.+.|.++||.+.|+ +.+++|+++ ..+++++++++++|++++
T Consensus 336 ~~~~~l~e~gV~v~PG~~F~~~~~iRis~--~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 336 RAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVL 382 (382)
T ss_dssp HHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHCCEEEEeCcccCCCCeEEEEE--cCCHHHHHHHHHHHHHhC
Confidence 8888999999999886 456899999 468899999999987653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-36 Score=268.90 Aligned_cols=332 Identities=14% Similarity=0.142 Sum_probs=244.0
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCC-------C-CeEE-cCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGK-------E-AGLF-VPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~-------~-~~~~-~~~gt~a~~~~l~ 71 (359)
+.+|||..+.+.+|. +.+++++.++... ...|++..+..+|+++++++++. + ..++ ++++++++..++.
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~ 104 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLS 104 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHT
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHH
Confidence 357999988776554 7788888765433 44688888899999999998741 1 2244 5555566666666
Q ss_pred HhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 72 VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 72 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+++ ++||.|++++|+|..... .+...|.+++.++.. +++.+|+++|++.++ ++++++++.+ ++||
T Consensus 105 ~l~-~~gd~vlv~~P~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~~~~-P~NP 171 (388)
T d1gdea_ 105 AFL-KDGEEVLIPTPAFVSYAP---AVILAGGKPVEVPTYEEDEFRLNVDELKKYVT--------DKTRALIINS-PCNP 171 (388)
T ss_dssp TTC-CTTCEEEEEESCCTTHHH---HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC--------TTEEEEEEES-SCTT
T ss_pred Hhc-CCCCEEEECCCCcHHHHH---HHHHcCCEEEEeecccccCCCCCHHHHHHhCc--------cCCeEEEECC-CcCC
Confidence 666 599999999999776543 377889899988754 456899999999998 6889999855 5679
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EE-EEeccccCCCcee--eEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SA-SVCLSKGLGAPVG--SVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~-~~s~~K~~g~~~g--g~~~~~~~~~ 224 (359)
||.+++.+++++|+++|++|+++||+||+|........ ..+...+....+ ++ ..|+||.||.|+. ||+++++++.
T Consensus 172 tG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~ 251 (388)
T d1gdea_ 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWII 251 (388)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccch
Confidence 99999999999999999999999999999754333211 122333322223 44 4599999986544 9999999999
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH-----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccc
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL-----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITED 299 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 299 (359)
+.+.........+.+. ....++..++ .......++.+.++...+.+.|... ++.+. .+.+++++|+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg~fl~~~l~~- 326 (388)
T d1gdea_ 252 ERMVKFQMYNATCPVT--FIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTV-KPKGAFYIFPRIRD- 326 (388)
T ss_dssp HHHHHHHHTTTCSCCH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCC-CCCBTTEECCBCGG-
T ss_pred hhhhhccccccccccc--cchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-ccccc-CCCceEEEEEECCC-
Confidence 9887776665555432 3333333333 2333445566777888888888887 77664 35688999999875
Q ss_pred hHHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 300 ~~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+.+..++.+.| +++||.+.|+ +++++|+++ ..+++++++++++|++++++++
T Consensus 327 ~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 327 TGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp GTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHHhcC
Confidence 345788888887 7889999776 356799999 4788999999999999998864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6e-36 Score=262.12 Aligned_cols=324 Identities=19% Similarity=0.189 Sum_probs=246.0
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhcCCe
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
..|||+.+++..|. +.+++++.+.......|+...+..++|++++++++.+.. ++++|+++++..++..++ ++++.
T Consensus 26 ~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~-~~~d~ 104 (368)
T d1v2da_ 26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV-GPGDE 104 (368)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-CTTCE
T ss_pred CCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc-ccccc
Confidence 46999988876544 889999998776666788888899999999999998753 777778888888888888 59999
Q ss_pred EEecCCCcceeeccccccccCCccceeeecC---CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNN---QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
|+++.|+|..... .....|.+++.++.+ +++.+|.+.+++.++ ++++++++.++ +||||..++.+
T Consensus 105 v~~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~~~~p-~NPtG~~~~~~ 172 (368)
T d1v2da_ 105 VVVLEPFFDVYLP---DAFLAGAKARLVRLDLTPEGFRLDLSALEKALT--------PRTRALLLNTP-MNPTGLVFGER 172 (368)
T ss_dssp EEEEESCCTTHHH---HHHHTTCEEEEEECEEETTEEECCHHHHHTTCC--------TTEEEEEEESS-CTTTCCCCCHH
T ss_pred ccccCCcchhhhh---HHHhcCCccceeccccccccccCCHHHHHHhhc--------cCceEEEEcCC-CCcccccCCHH
Confidence 9999999776553 366777777776442 456789999999998 78888888565 66999999999
Q ss_pred hHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCHHHHHHHHHHHHhhC
Q 018243 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLG 235 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~ 235 (359)
++++|+++|++||+++|+|++|....................+++.|+||.++.++. ||++.++++++.+........
T Consensus 173 ~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~ 252 (368)
T d1v2da_ 173 ELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTS 252 (368)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhhccc
Confidence 999999999999999999998754333322222222222233556699988887654 899999999998888877776
Q ss_pred CCcchhHHHHHHHHH---HHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 236 GGMRQVGVLCAAALV---ALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 236 ~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
.+.+...+...+... ....+.+..++.+.++++++.+.|+++ |+++.. +..++++|+.++.. +.. +.|.
T Consensus 253 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-p~g~~~~~~~l~~~---~~~---~ll~ 324 (368)
T d1v2da_ 253 FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYV-PEGTYFLMAELPGW---DAF---RLVE 324 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CSBSSEEEEECTTC---CHH---HHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEec-CCceeEEEEeCCcc---HHH---HHHH
Confidence 666443333222221 223455556677888999999999998 998754 55789999998763 433 3467
Q ss_pred hcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 313 ~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++||.+.|+ +.+++||++. .+++++++++++|++++
T Consensus 325 ~~gI~v~pg~~F~~~~~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 325 EARVALIPASAFYLEDPPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp HTCEECEEGGGGCSSSCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred hCCEEEEechhhCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 899999775 3467999984 68999999999998864
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-35 Score=257.65 Aligned_cols=332 Identities=16% Similarity=0.193 Sum_probs=258.3
Q ss_pred cccccccCCCCCC-h-HHHHHHHHHcCCCC--CC------ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTK-P-TEAMRAAMASAEVD--DD------VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~-~-~~~~~~a~~~~~~~--~~------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.|++|.+ . +|++++++.++... .. .++..+...++|+.+++++|.+.+++++||++|+..++.+
T Consensus 45 ~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~ 124 (401)
T d1fc4a_ 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFET 124 (401)
T ss_dssp CEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHH
T ss_pred CEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHH
Confidence 4579999987754 3 48888887764421 11 1334677789999999999999999999999999999999
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
+. ++++.|+++...|.+.+. + +...+.++..+++. |.+++++.++...+. .....+|++++..+ ..|.
T Consensus 125 l~-~~~d~i~~d~~~h~s~~~-G--~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~--~~~~~liv~egv~s-~~G~ 192 (401)
T d1fc4a_ 125 LL-GAEDAIISDALNHASIID-G--VRLCKAKRYRYANN-----DMQELEARLKEAREA--GARHVLIATDGVFS-MDGV 192 (401)
T ss_dssp HC-CTTCEEEEETTCCHHHHH-H--HHTSCSEEEEECTT-----CHHHHHHHHHHHHHT--TCSSEEEEEESEET-TTTE
T ss_pred hc-CCCcEEEeCCcchHHHHc-c--ccccCceEEEEcCC-----ChHHHHHHHHHhhhc--ccCceEEEEcCCCC-CCCc
Confidence 98 599999999999999887 4 66677777777765 777777766532111 14567888899888 4566
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
+.+ ++++.++|++||+++|+||+|++|.....|...... ....|+++.|++|.+|++.||++.+++++++.++.
T Consensus 193 ~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~ 269 (401)
T d1fc4a_ 193 IAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQ 269 (401)
T ss_dssp ECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHH
T ss_pred hhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHc
Confidence 666 899999999999999999999998887665544333 24678999999999987779999999999999876
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHhH--HHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 230 LRKTLGGGMRQVGVLCAAALVALQENV--LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
....+..+.+.++...+++..+++... ++++++..++.+++++.+.+. ++.+. ...++++.+.+.+. ..+.++
T Consensus 270 ~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~--~~~~pIv~v~~~~~--~~a~~~ 344 (401)
T d1fc4a_ 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA--GADHAIIPVMLGDA--VVAQKF 344 (401)
T ss_dssp HCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC--CSSSSEEEEEEECH--HHHHHH
T ss_pred CChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhccc-CCccC--CCCCCEEEEEECCH--HHHHHH
Confidence 655544444456666666666664332 347788899999999999998 77763 34677877777652 467789
Q ss_pred HHHHHhcCceec-------cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEEHGVLVM-------PESSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l~~~gi~~~-------~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++|.++||.+. |.+...+|++++..+|++|||+++++|+++.+++.
T Consensus 345 ~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 345 ARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp HHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999973 45667799999999999999999999999988764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=6e-34 Score=246.90 Aligned_cols=325 Identities=19% Similarity=0.184 Sum_probs=260.3
Q ss_pred cccccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~ 72 (359)
...+||+|+++.+-. |+++++..++... ...++..+.+.++|+++++++|.+.++++++|..|+..++.+
T Consensus 45 ~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~ 124 (396)
T d2bwna1 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLST 124 (396)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHH
T ss_pred eEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHH
Confidence 356899999888665 8888777664321 123556788899999999999999999999999999999998
Q ss_pred hh-hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HC-ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+. .++++.|+.+...|.+... + +++.+++++.++++ |.+++++.++.... .+.++|+++...+ ..|
T Consensus 125 l~~~~~~d~i~~D~~~Hasi~~-g--~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~----~~~~~iv~egvyS-mdG 191 (396)
T d2bwna1 125 LRVLFPGLIIYSDSLNHASMIE-G--IKRNAGPKRIFRHN-----DVAHLRELIAADDP----AAPKLIAFESVYS-MDG 191 (396)
T ss_dssp HHHHSTTCEEEEETTCCHHHHH-H--HHHSCCCEEEECTT-----CHHHHHHHHHHSCT----TSCEEEEEESBCT-TTC
T ss_pred HhcccCCCceeehhhhhhccch-h--hhccccCceEeecc-----hHHHhhhHHhhhcc----cCceeEEEEeecc-Ccc
Confidence 74 2578889899999999876 5 77888899988887 88888877763211 4567888888888 678
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhh---hcCccEEEEeccccCCCceeeEEecCHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL---VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKAR 228 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~ 228 (359)
.+.| +.+|.+++++||+++++||||++|..+..|...... ....|+++.|++|.||. .||++++++++++.++
T Consensus 192 d~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~-~Gg~v~~~~~~i~~l~ 267 (396)
T d2bwna1 192 DFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASARMVDAVR 267 (396)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECHHHHHHHH
T ss_pred cccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc-cccccchhHHHHHHHH
Confidence 8888 899999999999999999999999998777654432 34568999999999996 7889999999999999
Q ss_pred HHHHhhCCCcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHH
Q 018243 229 RLRKTLGGGMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYA 304 (359)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.....+..+++.++..++++..+++- ..++.+.+...+.+++++.|.++ |+.+. +..++++.+.+..+ ..+
T Consensus 268 ~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~--~~~spIvpv~ig~~--~~~ 342 (396)
T d2bwna1 268 SYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII--DHGSHIVPVVIGDP--VHT 342 (396)
T ss_dssp HHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCSSSCEEEECCCH--HHH
T ss_pred hhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcC--CCCCCEEEEEeCCH--HHH
Confidence 88777777777777777777666642 22234566778899999999998 88764 34788888888653 466
Q ss_pred HHHHHHH-HhcCcee-------ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 305 ACLLKKL-EEHGVLV-------MPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 305 ~~~~~~l-~~~gi~~-------~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.++.++| +++||.+ +|.+...+|++++..+|++|+++++++|+++
T Consensus 343 ~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 343 KAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp HHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 7788875 6899987 3456678999999999999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-34 Score=248.14 Aligned_cols=322 Identities=16% Similarity=0.184 Sum_probs=256.4
Q ss_pred ccccccCCCCCChH--HHHHHHHHcCCCC--------CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT--EAMRAAMASAEVD--------DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
+++||.|+++.+-. |+++++..++... ...++..+.+.++|+++++++|.+.+++++||.+|+..++.++
T Consensus 39 ~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al 118 (383)
T d1bs0a_ 39 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM 118 (383)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhh
Confidence 57999998887643 8888887764421 1235667889999999999999999999999999999999999
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
. ++++.|+++...|.+.+. + .+..+.+++.++++ |.+++++.+.... ++.++|+++++.+ ++|.+
T Consensus 119 ~-~~~d~v~~d~~~h~si~~-g--~~~~~~~~~~~~hn-----d~~~le~~l~~~~-----~~~~~vv~e~v~s-~~G~i 183 (383)
T d1bs0a_ 119 M-AKEDRIAADRLSHASLLE-A--ASLSPSQLRRFAHN-----DVTHLARLLASPC-----PGQQMVVTEGVFS-MDGDS 183 (383)
T ss_dssp C-CTTCEEEEETTCCHHHHH-H--HHTSSSEEEEECTT-----CHHHHHHHHHSCC-----SSCEEEEEESBCT-TTCCB
T ss_pred c-CCCceEEeeccccHHHhh-c--cccCCCcceEecch-----HHHHHHHHhcccC-----CCceEEEecCCCC-CCCcc
Confidence 9 599999999999999887 4 66778888888887 9999999998532 4567888877777 78998
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh-cCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV-QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRK 232 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~ 232 (359)
.| +.+|.++|++||+++++||+|++|..+..+....+.. ...+++..+++|.+|. .||++.++.+..+.++....
T Consensus 184 ~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~Gg~v~~~~~~~~~l~~~~~ 259 (383)
T d1bs0a_ 184 AP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV-SGAAVLCSSTVADYLLQFAR 259 (383)
T ss_dssp CC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS-CCEEEEECHHHHHHHHHHCH
T ss_pred cc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc-cccccccchhHHHHHHhhch
Confidence 88 7899999999999999999999998876666544432 3456777899999986 67778899999999887766
Q ss_pred hhCCCcchhHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHH
Q 018243 233 TLGGGMRQVGVLCAAALVALQE----NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLL 308 (359)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
.+..++..++...+++..+++. ..+.++++..++..++++.|+++ ++.+. +..++++.+.+..+ ..+.++.
T Consensus 260 ~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~--~~~s~Ii~v~~g~~--~~a~~~~ 334 (383)
T d1bs0a_ 260 HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLA--DSCSAIQPLIVGDN--SRALQLA 334 (383)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC--SCCSSBCCEEEESH--HHHHHHH
T ss_pred hhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccC--CCCCCEEEEEECCH--HHHHHHH
Confidence 6666665566666666555532 22336667778899999999998 88764 34677777766552 3677899
Q ss_pred HHHHhcCceec-------cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 309 KKLEEHGVLVM-------PESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 309 ~~l~~~gi~~~-------~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
++|.++||.+. |.+...+|++++..+|++|||+++++|..+
T Consensus 335 ~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 335 EKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 99999999873 456678999999999999999999998753
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-34 Score=252.11 Aligned_cols=325 Identities=15% Similarity=0.168 Sum_probs=239.5
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhC----CC----CeEEcCCchHHHHHHHHHh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMG----KE----AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~----~~----~~~~~~~gt~a~~~~l~~~ 73 (359)
.+|||..+++..|. +.+++++.+... +...|+...+..++|++++++++ .+ ..++++++++++..++.++
T Consensus 29 ~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 108 (375)
T d1o4sa_ 29 DVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL 108 (375)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH
Confidence 47999998877544 788888877543 33458888889999999998864 22 2366677777888888888
Q ss_pred hhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+ ++|+.|++++|+|..... .....+...+.++.. .++.++.+.++.... .+++++++.+| +||||
T Consensus 109 ~-~~gd~vlv~~P~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~nP-~NPTG 175 (375)
T d1o4sa_ 109 L-DPGDEVIVFSPVWVSYIP---QIILAGGTVNVVETFMSKNFQPSLEEVEGLLV--------GKTKAVLINSP-NNPTG 175 (375)
T ss_dssp C-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC--------TTEEEEEEESS-CTTTC
T ss_pred h-CCCCEEEEccCccccchh---hhhccccccccccccccccccchhHHHHHhhc--------cCccEEEEeCC-CCCcc
Confidence 8 599999999999776543 355666677666433 456778888888766 78889988565 67999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EEE-EeccccCCCcee--eEEecCHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SAS-VCLSKGLGAPVG--SVIVGSKEFIKKA 227 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~~-~s~~K~~g~~~g--g~~~~~~~~~~~~ 227 (359)
.+++.+++++|+++|++|+++||+||+|.+.................+ +++ .|+||.|+.|+. ||++++++.++.+
T Consensus 176 ~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~ 255 (375)
T d1o4sa_ 176 VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAV 255 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhh
Confidence 999999999999999999999999998655433322222223322223 444 499999986544 9999999999988
Q ss_pred HHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 228 RRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
........... ...........++.......+.+.++++.+.+.|++. |+++. ++.+++++|+.++. +..++
T Consensus 256 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~-~p~gg~f~~~~~~~----~~~~~ 327 (375)
T d1o4sa_ 256 SKIQSHTTSCI--NTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GVKFV-EPEGAFYLFFKVRG----DDVKF 327 (375)
T ss_dssp HHHHHHHTCSC--CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCC-CCSBSSEEEEECSS----CHHHH
T ss_pred hhhhccccccc--cccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc-CceEe-cCCccEEEEEECCC----CHHHH
Confidence 77766665544 3333334444444444445667788888999999988 88874 45688999999987 34455
Q ss_pred HHH-HHhcCceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 308 LKK-LEEHGVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 308 ~~~-l~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
..+ |+++||.+.|+. ++++||++. .+++++++++++|+++++
T Consensus 328 ~~~ll~~~gV~v~pG~~F~~~g~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 328 CERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 555 478999998763 568999994 689999999999999875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.2e-35 Score=256.99 Aligned_cols=331 Identities=15% Similarity=0.114 Sum_probs=233.0
Q ss_pred ccccccCCCC----CChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTV----TKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~----~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l 70 (359)
.+|+|..+++ ..|++.+++++.++... ...|+...+..+|++++++++ |.+ ..++++++++++..++
T Consensus 31 ~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~ 110 (395)
T d1xi9a_ 31 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIF 110 (395)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhh
Confidence 4688988765 23447788888775533 445888888999999999886 332 2245555666676777
Q ss_pred HHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccC
Q 018243 71 LVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHAN 148 (359)
Q Consensus 71 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ 148 (359)
..++ .+||.|++++|+|.. +. ..+...|.+++.++. ..++.+|.+++++.+. ++++++++.+| ||
T Consensus 111 ~~~~-~~Gd~vlv~~P~y~~-~~--~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~--------~~~~~v~l~~P-~N 177 (395)
T d1xi9a_ 111 GALL-DPGDEILVPGPSYPP-YT--GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT--------DRTKAIAVINP-NN 177 (395)
T ss_dssp HHHC-CTTCEEEEEESCCHH-HH--HHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC--------TTEEEEEEESS-CT
T ss_pred hhhc-CCCCEEEEcCCcccc-ch--hhhhhcCCEEEEEeccccccccchHHHHHHhhc--------ccccEEEecCC-CC
Confidence 6666 599999999999766 44 347888888888853 3457789999999988 78899998665 67
Q ss_pred CCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEE-eccccCCCcee--eEEec--CHHH
Q 018243 149 CGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASV-CLSKGLGAPVG--SVIVG--SKEF 223 (359)
Q Consensus 149 ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~-s~~K~~g~~~g--g~~~~--~~~~ 223 (359)
|||.+++.+++++|+++|++|+++||.|++|....+.....+...+.....++++ |+||.|+.|+. ||++. +...
T Consensus 178 PTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~ 257 (395)
T d1xi9a_ 178 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENK 257 (395)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCT
T ss_pred CccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHH
Confidence 9999999999999999999999999999997543332222333333333345555 99999987543 66543 3333
Q ss_pred HHHHHHHH---HhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEec
Q 018243 224 IKKARRLR---KTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEIT 297 (359)
Q Consensus 224 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
...+.... .....+.+. ..+.++...+ +.++++.++.+.++++.+.+.|++++++.+ ..+.+++++|+.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~gg~~~~~~l~ 334 (395)
T d1xi9a_ 258 LSEVREAIDRLARIRLCPNT--PAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPKIE 334 (395)
T ss_dssp THHHHHHHHHHHHHTCCSCS--HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCCBSSEECCEEC
T ss_pred HHHHHHHHHHhhcCCCCcCH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-cCCCeeEEEeEECC
Confidence 33332222 222222322 2333333333 345665777788999999999999866665 44567999999887
Q ss_pred cchHHHHHHHHHHH-HhcCceeccCC------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 298 EDSKLYAACLLKKL-EEHGVLVMPES------STRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 298 ~~~~~~~~~~~~~l-~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.....+..+++.+| +++||.+.|+. .+++||++ ..+++++++++++|++++++
T Consensus 335 ~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~--~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 335 VGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVF--LPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp SCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence 53223555666665 78999997763 56799998 47899999999999998875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=5.5e-34 Score=251.46 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=230.2
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHHHHhh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l~~~~ 74 (359)
.+|+|..+.+.+|. +.+++++.++... ..|++.++..+||+++++++ |.+ ..++++|+++++..++.+++
T Consensus 32 ~vi~l~~g~pdf~~p~~v~~al~~~~~~-~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~ 110 (394)
T d1c7na_ 32 EVVPLSVADMEFKNPPELIEGLKKYLDE-TVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT 110 (394)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHH-CCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC-CCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc
Confidence 56888888777665 7888888765432 22333344678999999887 332 22566666778888888887
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeee---cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK---NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++||.|+++.|.|++.+. .....|...+.++ .+..+.+|.+.++..+.. ++++++++. .+|||||
T Consensus 111 -~pgd~vi~~~p~~~~~~~---~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~i~l~-~P~NPTG 178 (394)
T d1c7na_ 111 -KPGDGVIIITPVYYPFFM---AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-------KNNKALLFC-SPHNPVG 178 (394)
T ss_dssp -CTTCEEEECSSCCTHHHH---HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-------TTEEEEEEE-SSBTTTT
T ss_pred -ccccccccccCcccchhh---HHhhhhhcccccccccccccccchhhhhhhhhcc-------ccceEEEec-ccccccc
Confidence 599999999999887664 3566676777664 234456789988888764 679999984 5667999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc-hhHhhh---cCccEEEEeccccCCCcee--eEEe-cCHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV-PVRRLV---QAADSASVCLSKGLGAPVG--SVIV-GSKEFI 224 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~~~~~~---~~~d~~~~s~~K~~g~~~g--g~~~-~~~~~~ 224 (359)
.+++.+++++|+++|++++++||+||+|....+..... +..... ...-+++.|+||.++.++. |+++ .++.+.
T Consensus 179 ~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~ 258 (394)
T d1c7na_ 179 RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR 258 (394)
T ss_dssp BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHH
T ss_pred eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhh
Confidence 99999999999999999999999999974433221111 111111 1222455599999986532 5444 566777
Q ss_pred HHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccch
Q 018243 225 KKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDS 300 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~ 300 (359)
+.+............. ....+++.... ..+.++..+.+.++++.+.+.++. .+++.+. .+.+++++|++++. .
T Consensus 259 ~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~g~~~~~~~~~~-~ 335 (394)
T d1c7na_ 259 ERFTKSRDATSGMPFT-TLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFRA-L 335 (394)
T ss_dssp HHHHHHHHHTTCCCCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCSBSSEEEEECGG-G
T ss_pred hhhhhhhhhccccccc-cccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeec-CCCceeEEEEECCC-C
Confidence 7776666554444322 22222332222 344454555666777777777775 3566653 35578889999875 3
Q ss_pred HHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 301 KLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 301 ~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+.+..+++++| +++||.+.|| +.+++||++ ..+++++++++++|++++++++
T Consensus 336 ~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 336 KMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL--AAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE--eCCHHHHHHHHHHHHHHHHhcC
Confidence 45788999988 6779999775 356899998 4788999999999999999873
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.9e-34 Score=255.62 Aligned_cols=346 Identities=14% Similarity=0.118 Sum_probs=235.6
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHh----CCC----CeEEc-CCchHHH
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVM----GKE----AGLFV-PSGTMGN 66 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~-~~gt~a~ 66 (359)
+.+|||..+.+. +|.+.+.+++.+.... ...|+...+..+|++++++++ |.+ ..+++ +|+++++
T Consensus 38 ~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al 117 (420)
T d1vp4a_ 38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL 117 (420)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH
T ss_pred CCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhH
Confidence 568999988653 5666666666553322 235888888999999999876 332 12554 4555677
Q ss_pred HHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 67 LISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 67 ~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..++..++ .+||.|++++|+|..... .++..|.+++.++.++. .++++.+...+.+........+++.+++.+++
T Consensus 118 ~~~~~~~~-~~Gd~Vlv~~P~y~~~~~---~~~~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 192 (420)
T d1vp4a_ 118 DLIGKLFL-DDESYCVLDDPAYLGAIN---AFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNF 192 (420)
T ss_dssp HHHHHHHC-CTTCEEEEEESCCHHHHH---HHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSS
T ss_pred HHHHHhhh-ccccccccccccccchhH---HHHHHhhhccccccccc-ccccchhhhhhhhhHHHhhccccceeeEecCC
Confidence 66776666 599999999999776543 47788889998887654 36887776655421111111456666666888
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhhcCcc-E-EEEeccccCCCcee-eEEecCHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQAAD-S-ASVCLSKGLGAPVG-SVIVGSKE 222 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~d-~-~~~s~~K~~g~~~g-g~~~~~~~ 222 (359)
+||||.+++.+++++|+++|++|++++|+||+|....+.... .+..... ..+ + +..|++|+++.+.. ||++++++
T Consensus 193 ~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~~~~G~RiG~~~~~~~ 271 (420)
T d1vp4a_ 193 HNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLAPGLRIGMVAGSKE 271 (420)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTCGGGCEEEEECCHH
T ss_pred CCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccccccccccccccccccch
Confidence 899999999999999999999999999999996543332111 1122221 222 3 44478887753223 99999999
Q ss_pred HHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHH----HHHHhcCCCceEecCCccceEEEEE
Q 018243 223 FIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLL----AEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l----~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
+++.+.........+.+......++....- .+.....++.+.++.+.+ .+.+.+.||+++. ++.++.++|+.
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~-~p~gg~f~~~~ 350 (420)
T d1vp4a_ 272 FIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV-KSEGGLFIWLT 350 (420)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC-CCSBSSEEEEE
T ss_pred hhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEe-cCCceEEEEEE
Confidence 999988777766655533333222222211 122222344444444444 4444556788884 45688999999
Q ss_pred eccchHHHHHHHHHHHHhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 018243 296 ITEDSKLYAACLLKKLEEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENG 358 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 358 (359)
++. +.+..++.+.|.++||.+.|+. .+++||+++ ..+++++++++++|+++++++.+++.
T Consensus 351 ~~~--~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~~~ 418 (420)
T d1vp4a_ 351 LPE--GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKEKH 418 (420)
T ss_dssp CCT--TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC--CCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHhhC
Confidence 975 3567788889999999997762 458999986 47889999999999999999988764
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.2e-33 Score=251.15 Aligned_cols=329 Identities=14% Similarity=0.097 Sum_probs=237.6
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHh----CCC----CeEE-cCCchHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVM----GKE----AGLF-VPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~----~~~----~~~~-~~~gt~a~~~~ 69 (359)
..|||+.+++..+. +.+++++.++... ...|+...+..++|+++++++ |.+ ..++ ++|+++|+..+
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~ 106 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 106 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence 56999998887554 6777877665432 235777888999999999886 332 2254 44555677777
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCC----------CCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD----------GTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+..++ ++|+.|++++|+|.... ..+...|.+++.++.+.+ +..+.+.+..... .++++
T Consensus 107 ~~~l~-~~gd~vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 174 (418)
T d2r5ea1 107 IQGHV-DEGDEVIIIEPFFDCYE---PMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN--------EKTKM 174 (418)
T ss_dssp HHHHC-CTTCEEEEEESCCTTHH---HHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC--------TTEEE
T ss_pred hhhcc-ccccceeccccccchhh---HHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh--------ccccc
Confidence 77777 59999999999977654 347777888888755322 3467888888776 78899
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcC-ccEE-EEeccccCCCcee--
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQA-ADSA-SVCLSKGLGAPVG-- 214 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~-~d~~-~~s~~K~~g~~~g-- 214 (359)
+++ +++|||||.+++.+++++|+++|++|+++||+|++|........ ..+...+... ..++ +.|+||.++.|+.
T Consensus 175 ~~i-~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRi 253 (418)
T d2r5ea1 175 III-NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI 253 (418)
T ss_dssp EEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC
T ss_pred eec-CCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccc
Confidence 988 55677999999999999999999999999999999755433211 1222222211 2244 4499999987654
Q ss_pred eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH----------HHhHHHHhhhHHHHHHHHHHHHhcCCCceEec
Q 018243 215 SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL----------QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV 284 (359)
Q Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 284 (359)
||+++++++++.+.........+.+. ..+.++...+ +.+....++.+..+++.+.+.|++. |+++..
T Consensus 254 G~~~~~~~~i~~~~~~~~~~~~~~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~ 330 (418)
T d2r5ea1 254 GWAYGPEALLKNLQMVHQNCVYTCAT--PIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTV 330 (418)
T ss_dssp EEEESCHHHHHHHHHHHTTTTCSCCH--HHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred ccccccchhhhhhhhccccccccccc--chhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccC
Confidence 99999999999987776655544432 2222222222 2344556677888999999999998 998754
Q ss_pred CCccceEEEEEeccc----------hHHHHHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHHHHHH
Q 018243 285 DAVETNIVYFEITED----------SKLYAACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISANDVHYT 342 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i~~~ 342 (359)
|.+++++|+.++.. ...+..+|+++| +++||.+.|+. .+++||++ ..++++++++
T Consensus 331 -P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a 407 (418)
T d2r5ea1 331 -PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKA 407 (418)
T ss_dssp -CSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHH
T ss_pred -CCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHH
Confidence 56899999988531 123677888888 77899998863 35799999 4689999999
Q ss_pred HHHHHHHHH
Q 018243 343 LSCFQKIYA 351 (359)
Q Consensus 343 ~~~l~~~~~ 351 (359)
+++|++++.
T Consensus 408 ~~rl~~~lg 416 (418)
T d2r5ea1 408 AEILRKWKG 416 (418)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999988763
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-33 Score=243.18 Aligned_cols=331 Identities=13% Similarity=0.087 Sum_probs=223.0
Q ss_pred cccccCCCCCChH-HHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CCC----CeEEcCCchHHHHHHHHHhh
Q 018243 5 TVDLRSDTVTKPT-EAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GKE----AGLFVPSGTMGNLISVLVHC 74 (359)
Q Consensus 5 ~id~~~~~~~~~~-~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~~~gt~a~~~~l~~~~ 74 (359)
+|+|.-+.+.+|. |.+++++.+.... ...|....+ .++++++++++ |.+ ..++++|+++++..++.+++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~ 79 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 79 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc
Confidence 3566666666665 7888888775433 334655555 56888888775 543 22555556666666777776
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeeec---CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN---NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++||+|++++|+|..... .....|..++.++. ++++.+|++.+++.+.+ ++++++++.+ ++||||
T Consensus 80 -~~gd~Vlv~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-------~~~~~i~l~~-p~NPTG 147 (361)
T d1d2fa_ 80 -ETGEGVVIHTPAYDAFYK---AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-------PECKIMLLCS-PQNPTG 147 (361)
T ss_dssp -CTTCEEEEEESCCHHHHH---HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-------TTEEEEEEES-SCTTTC
T ss_pred -ccccccccccccccchhH---HHHhhcceEEeecccccccccccccccchhhccc-------CCceeEEecc-cccccc
Confidence 699999999999877543 46677888877743 23456899999999975 7899999855 577999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-EEEEeccccCCCcee--eEEec-CHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-SASVCLSKGLGAPVG--SVIVG-SKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~~~~s~~K~~g~~~g--g~~~~-~~~~~~~ 226 (359)
.+++.+++++|+++|+++|++||+|++|....+... ..+..... ..+ +++.|+||.++.++. ||++. ++...+.
T Consensus 148 ~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~ 226 (361)
T d1d2fa_ 148 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDA 226 (361)
T ss_dssp CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHH
T ss_pred cccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceeeecchhHHHHH
Confidence 999999999999999999999999999754332211 11222222 223 455599998876432 76654 4444343
Q ss_pred H-HHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhc-CCCceEecCCccceEEEEEeccchH
Q 018243 227 A-RRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQ-LKGLRVDVDAVETNIVYFEITEDSK 301 (359)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
. .......+.+.. ......+....+ ..+.+..+..+.++++.+.+.+.+ .+++.+. ++.++.++|+.++. .+
T Consensus 227 ~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~p~gg~~~~~~l~~-~~ 303 (361)
T d1d2fa_ 227 YLSALKGRDGLSSP-SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRP-LN 303 (361)
T ss_dssp HHHHHHTTSCCCSC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGG-GC
T ss_pred Hhhhcccccccccc-hhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccccccc-ccCceeEEEEEccC-CC
Confidence 3 333333333222 222222333333 333444555566777777776655 3566654 35578889998864 34
Q ss_pred HHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 302 LYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 302 ~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.+..+++++| +++||.+.|+ +.+++|+++ ..+++++++.+++|++++++++
T Consensus 304 ~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 304 IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999988 6779999775 356799998 4789999999999999999874
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.6e-33 Score=242.37 Aligned_cols=316 Identities=16% Similarity=0.132 Sum_probs=222.2
Q ss_pred ccccccCC-CCCChHHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeE
Q 018243 4 RTVDLRSD-TVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEV 81 (359)
Q Consensus 4 ~~id~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~v 81 (359)
.+|||+++ ++.+|+|.+++++.+.......| +++...+|++.++++++.+.. +++++|++.....+..+. .++.+
T Consensus 23 ~~idls~~~np~~~p~~~~~a~~~~~~~~~~Y-p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~--~~~~~ 99 (355)
T d1lc5a_ 23 QLLDFSANINPLGMPVSVKRALIDNLDCIERY-PDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRA 99 (355)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSC-CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEE
T ss_pred heEEccCCCCCCCCCHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh--ccccc
Confidence 46999987 55667788999998876554446 445568999999999998764 777788777666666655 34455
Q ss_pred EecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhH
Q 018243 82 ILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159 (359)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l 159 (359)
++..|.|.. +. ......+..++.++.. +++.++ +.+.+.+. +++++|++++| |||||..++.+++
T Consensus 100 ~v~~p~~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~--------~~~~~v~l~nP-~NPtG~~~~~e~l 166 (355)
T d1lc5a_ 100 MIVTPGFAE-YG--RALAQSGCEIRRWSLREADGWQLT-DAILEALT--------PDLDCLFLCTP-NNPTGLLPERPLL 166 (355)
T ss_dssp EEEESCCTH-HH--HHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC--------TTCCEEEEESS-CTTTCCCCCHHHH
T ss_pred cccCCccce-ec--cccccccccceeeeeeccCCccce-eeeeeccc--------cccceeeeecc-cCcccccchhhhh
Confidence 555666443 33 2255556667666543 344444 45666666 78999999665 6799999999999
Q ss_pred HHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcC-cc-EEEEeccccCCCcee--eEEecCHH-HHHHHHHHHHhh
Q 018243 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQA-AD-SASVCLSKGLGAPVG--SVIVGSKE-FIKKARRLRKTL 234 (359)
Q Consensus 160 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~-~d-~~~~s~~K~~g~~~g--g~~~~~~~-~~~~~~~~~~~~ 234 (359)
.+|.++|++|++++|+||+|..... ...+....... .. +++.|+||.+|.|+. ||++++++ +.+.++.....
T Consensus 167 ~~i~~~a~~~~~~li~De~y~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~- 243 (355)
T d1lc5a_ 167 QAIADRCKSLNINLILDEAFIDFIP--HETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP- 243 (355)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGST--TCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-
T ss_pred hhhhhhccccccccccccceeeeee--ecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhcCC-
Confidence 9999999999999999999643222 22222222222 23 444599999986543 88888654 44544433221
Q ss_pred CCCcchhHHHHHHHHHHHH--HhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHH
Q 018243 235 GGGMRQVGVLCAAALVALQ--ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLE 312 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (359)
+..+.....++..+++ .+..+.++++.++.+++.+.|.+++++++. +..++|+|+.++. +..++.+.|.
T Consensus 244 ---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--p~~~~f~~~~~~~----~~~~~~~~L~ 314 (355)
T d1lc5a_ 244 ---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRCER----EDIDLQRRLL 314 (355)
T ss_dssp ---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEESC----TTCCHHHHHH
T ss_pred ---ccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEEC--CCCCEEEEEECCC----CHHHHHHHHH
Confidence 2224444555555553 344456777888889999999999888864 4688999999876 5567889999
Q ss_pred hcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 313 EHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 313 ~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++||.++++ +.+++||++. +++++++++++|++++
T Consensus 315 ~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 315 TQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp TTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred HCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 999999765 2468999983 7899999999998864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-33 Score=246.87 Aligned_cols=329 Identities=16% Similarity=0.147 Sum_probs=230.0
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC----C---CeEEcCCc-hHHHHHHHHHhh
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK----E---AGLFVPSG-TMGNLISVLVHC 74 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~---~~~~~~~g-t~a~~~~l~~~~ 74 (359)
.+|||+.+.+..|. +.+.+++.+...+...|+...+..+||+.+++++.. + ..+++++| ++++..++..++
T Consensus 29 ~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~ 108 (389)
T d2gb3a1 29 RIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA 108 (389)
T ss_dssp EEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc
Confidence 46899998887654 678888888765666788888999999999998742 2 12555554 556666666666
Q ss_pred hhcCCeEEecCCCcceeeccccccccCCccceeeecCCC-CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCcee
Q 018243 75 ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRC 153 (359)
Q Consensus 75 ~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~ 153 (359)
.+|+.|+++.|+|+... ......|..++.++.+.+ +..+.+.+...+. ++++++++.+ ++||||.+
T Consensus 109 -~~gd~V~i~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~n-P~NPtG~~ 175 (389)
T d2gb3a1 109 -NPGDEILVLEPFYANYN---AFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN--------ERTKGIVLSN-PCNPTGVV 175 (389)
T ss_dssp -CTTCEEEEEESCCTHHH---HHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC--------TTEEEEEEES-SCTTTCCC
T ss_pred -cCCCeEEEeCCCCcccc---ccccccCccccccccccccccchhhhhhhhcc--------cCccEEEeCC-CCcccccc
Confidence 69999999999976654 347777888888866544 3334444555444 7889999955 56799999
Q ss_pred cChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEEecCH-HHHHHHHHH
Q 018243 154 LSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVIVGSK-EFIKKARRL 230 (359)
Q Consensus 154 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~~~~~-~~~~~~~~~ 230 (359)
++.+++++|.++|++|+++||+||+|..........+.........+++.|+||.++.|+. ||+++++ .+.+.....
T Consensus 176 ~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~ 255 (389)
T d2gb3a1 176 YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKL 255 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHH
T ss_pred chHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhhh
Confidence 9999999999999999999999999644333211122222222223555699999987654 8888754 454444433
Q ss_pred HHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHH
Q 018243 231 RKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
... ..+. ......++...+ +.+.+..++.+.++++.+.+.|+++ ++.....+.+++++|++++.. +..++
T Consensus 256 ~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~p~~g~~~~~~lp~~---~~~~~ 328 (389)
T d2gb3a1 256 AQG-RLAP--PLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVE---DAEEF 328 (389)
T ss_dssp HHH-SCCC--CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSS---CHHHH
T ss_pred hhc-cccc--cccccccccccccccchhcccccccccccchhhhhhhhhh-ccccccCCCceEEEEEeCCCC---CHHHH
Confidence 332 2222 222222222233 4555657778889999999999999 554334567899999999863 67788
Q ss_pred HHHH-Hh-----cCceeccC---------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 308 LKKL-EE-----HGVLVMPE---------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 308 ~~~l-~~-----~gi~~~~~---------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
+++| .+ +||.+.|+ +.+++||++ ..+++++++++++|.++++++.
T Consensus 329 ~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~--~~~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 329 ARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC--VLEKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp HHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC--CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHHhh
Confidence 8887 43 36666554 246899998 4789999999999999999863
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.4e-32 Score=243.48 Aligned_cols=340 Identities=13% Similarity=0.101 Sum_probs=233.3
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC-------------CCccCCChHHHHHHHHHHHHhC------C--C-CeEEc-CC
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD-------------DDVLMHDPTAFRLETEMAKVMG------K--E-AGLFV-PS 61 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~~~l~~~la~~~~------~--~-~~~~~-~~ 61 (359)
+|+|..+-+..+.+.+.+.+.+.... ...|+...+..+||++++++++ . + ..+++ ++
T Consensus 38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G 117 (431)
T d1m7ya_ 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG 117 (431)
T ss_dssp BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH
T ss_pred EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCC
Confidence 68888887777777777766542210 1137777788999999998864 1 1 22444 45
Q ss_pred chHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 62 GTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 62 gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
+++++..++.+++ ++||.|++++|+|..... .+....|++++.++.+ .++.+|.+.+++.+++.... ..++++
T Consensus 118 ~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~--~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~ 192 (431)
T d1m7ya_ 118 ATSANETFIFCLA-DPGEAVLIPTPYYPGFDR--DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR--NLRVKG 192 (431)
T ss_dssp HHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH--HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT--TCCEEE
T ss_pred HHHHHHHHHHHhc-CCCCEEEEeCCCchhHHH--HHHHhcCceeccccccchhcccccHHHhhhhhhhhhhc--cCcceE
Confidence 5677777777777 599999999999877654 2234568888888654 34678999988887642111 157888
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc---------Ccc-EE-EEeccc
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ---------AAD-SA-SVCLSK 207 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~---------~~d-~~-~~s~~K 207 (359)
+++++| +||||.+++.+++++|.++|+++|++||+||+|....+... ..+..++.. ..+ ++ ..|+||
T Consensus 193 i~~~nP-~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK 271 (431)
T d1m7ya_ 193 VLVTNP-SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 271 (431)
T ss_dssp EEEESS-CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSS
T ss_pred EEecCc-cccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcc
Confidence 888554 56999999999999999999999999999999754332211 112222211 111 44 449999
Q ss_pred cCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHH---HHHhHHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 208 GLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVA---LQENVLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 208 ~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
.||.++. ||++++++++..............+......++.+.. .+++..+.+.++.++++.+.+.|++. |+++
T Consensus 272 ~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~ 350 (431)
T d1m7ya_ 272 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISC 350 (431)
T ss_dssp SSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred cccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEE
Confidence 9986543 8888877776555444333333332222222222221 24455556777888899999999886 9998
Q ss_pred ecCCccceEEEEEeccc----hHHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITED----SKLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
. ++.++.++|+.++.. ...+..+++++| +++||.+.|+ +++++||++. ..+++++++++++|+++++
T Consensus 351 ~-~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 351 L-NGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp C-CCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred e-cCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH
Confidence 5 456889999998641 223556788887 7889999875 3568999985 4678899999999999998
Q ss_pred HH
Q 018243 352 GV 353 (359)
Q Consensus 352 ~~ 353 (359)
++
T Consensus 429 ~~ 430 (431)
T d1m7ya_ 429 EY 430 (431)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=3.7e-32 Score=241.28 Aligned_cols=330 Identities=15% Similarity=0.119 Sum_probs=232.0
Q ss_pred ccccccCCCCCC-----hHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCC------------C--CeEEcCCc
Q 018243 4 RTVDLRSDTVTK-----PTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGK------------E--AGLFVPSG 62 (359)
Q Consensus 4 ~~id~~~~~~~~-----~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~------------~--~~~~~~~g 62 (359)
.+|||..+.+.. +.+.+.+++.+.... ...|+...+..+||+++++++.. + ..++++|+
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~ 110 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG 110 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHH
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEeccc
Confidence 468998876532 236777777654322 34588888899999999988631 1 22555556
Q ss_pred hHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 63 TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 63 t~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++++..++.+++ ++||+|++++|+|... . ..+...|++++.++.+ .++.++.+.+++..+ ++++++
T Consensus 111 ~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~-~--~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~--------~~~~~~ 178 (412)
T d1bw0a_ 111 SHGILMAITAIC-DAGDYALVPQPGFPHY-E--TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD--------DKTKLL 178 (412)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTHH-H--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC--------TTEEEE
T ss_pred ccchhhhhhhhh-ccccceeeeeccchhh-h--hhhhccCccccccccccccccchhhHHHHhhhh--------cccccc
Confidence 677778888777 5999999999997664 4 3478889999988654 456689999999887 788898
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh-------hhcCccEE-EEeccccCCCc
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR-------LVQAADSA-SVCLSKGLGAP 212 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-------~~~~~d~~-~~s~~K~~g~~ 212 (359)
++. .++||||.+++.+++++|.++|++|+++||+||+|....+ .+..... ......++ ..|+||.++.+
T Consensus 179 ~l~-np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~ 255 (412)
T d1bw0a_ 179 IVT-NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVF--KGKDPNATFTSVADFETTVPRVILGGTAKNLVVP 255 (412)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBC--CSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG
T ss_pred ccc-cccccccccchhhhccccccccccCCeeeechhhHHHhcc--CCCCCccccccccccccccccccccccCccCccC
Confidence 885 5566999999999999999999999999999999643322 2221111 11112233 44999999876
Q ss_pred ee--eEEecC------HHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 213 VG--SVIVGS------KEFIKKARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 213 ~g--g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
+. ||++++ ...+.............. ....+.++.... +++..+.++++.++++.+.+.|.+.+|+.
T Consensus 256 G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~ 333 (412)
T d1bw0a_ 256 GWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPC--TVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLA 333 (412)
T ss_dssp GGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSC--HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEE
T ss_pred CCCcccccccchhhcchhhhhhhccccccccCCc--hhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCce
Confidence 54 887764 233444333333332222 222222222222 34555577788899999999998887988
Q ss_pred EecCCccceEEEEEeccc---hHHHHHHHHHHH-HhcCceeccC----CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 282 VDVDAVETNIVYFEITED---SKLYAACLLKKL-EEHGVLVMPE----SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l-~~~gi~~~~~----~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+. .+.+++++|++++.. ...+..+++++| +++||.+.|| .++++||++ ..+++++++++++|++++++.
T Consensus 334 ~~-~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~--~~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 334 PT-MPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp EC-CCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred ec-CCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence 74 456899999988642 112567888887 6789999886 467899998 478999999999999998875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=6.8e-32 Score=240.36 Aligned_cols=337 Identities=13% Similarity=0.110 Sum_probs=229.2
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCC------------CccCCChHHHHHHHHHHHHhCC--------C--CeEEcCCc
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDD------------DVLMHDPTAFRLETEMAKVMGK--------E--AGLFVPSG 62 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~------------~~~~~~~~~~~l~~~la~~~~~--------~--~~~~~~~g 62 (359)
+|+|...-+..+++.+.+.+.+..... ..|+...+..+||++++++++. + ..++++|+
T Consensus 38 ~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~ 117 (428)
T d1iaya_ 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGA 117 (428)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHH
T ss_pred eEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCH
Confidence 688888777777777777665532211 1367777889999999998641 1 23555556
Q ss_pred hHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 63 TMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 63 t~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++++..++.+++ .+||+|+++.|+|..... .+....|++++.++.+ .++.+|.+.++..++... ...++++++
T Consensus 118 ~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~--~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~ 192 (428)
T d1iaya_ 118 TGANETIIFCLA-DPGDAFLVPSPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQ--KSNIKVKGL 192 (428)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEESSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHH--HTTCCEEEE
T ss_pred HHHHHHHHHHhC-CCCCEEEEccCCchHHHH--HHHHhcCCeEEEeecccccccccccccccchhhhhh--ccCCCceEE
Confidence 677778887777 599999999999877654 2344568888888654 457789988876654211 111678888
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhc-------Ccc--EEEEeccccCC
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQ-------AAD--SASVCLSKGLG 210 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~-------~~d--~~~~s~~K~~g 210 (359)
++.+| +||||.+++.+++++|.++|++||++||+||+|....+... ..+...+.. ..+ +++.|+||.|+
T Consensus 193 ~l~nP-~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 271 (428)
T d1iaya_ 193 ILTNP-SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG 271 (428)
T ss_dssp EEESS-CTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS
T ss_pred EEccC-CCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCccc
Confidence 88554 66999999999999999999999999999999754332211 122222211 112 44559999997
Q ss_pred Ccee--eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHH----HHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 211 APVG--SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAAL----VALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 211 ~~~g--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
.++. ||+++ ++.+.+.++.......... ....+.++. ..++.+.++.++++.++++.+.+.|+.. |+++.
T Consensus 272 ~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~ 348 (428)
T d1iaya_ 272 LPGFRVGIIYSFNDDVVNCARKMSSFGLVST--QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCL 348 (428)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHHTTSCCCH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred CCCcccccccccccchhhhhhhhhccccccc--ccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEe
Confidence 6533 77776 6667666655444332222 222222221 1224455556667778889999999886 99875
Q ss_pred cCCccceEEEEEeccc----hHHHHHHHHHHH-HhcCceeccC------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 284 VDAVETNIVYFEITED----SKLYAACLLKKL-EEHGVLVMPE------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~~~gi~~~~~------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
++.++.++|+.++.. ...+..++.+.| +++||.+.|| +++++|+++. ..+++++++++++|++++..
T Consensus 349 -~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 349 -KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp -CCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred -cCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 456789999998641 122455777777 6789999775 3678999985 46778899999999988854
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.4e-32 Score=243.57 Aligned_cols=337 Identities=13% Similarity=0.130 Sum_probs=231.4
Q ss_pred cccccccCCCCC---ChHHHHHHHHHcCCCC----CCccCCChHHHHHHHHHHHHhC----CC----CeEEcCCchHHHH
Q 018243 3 TRTVDLRSDTVT---KPTEAMRAAMASAEVD----DDVLMHDPTAFRLETEMAKVMG----KE----AGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~~---~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~----~~----~~~~~~~gt~a~~ 67 (359)
+.+|+|+.+.+. .|.+.+.+++.+.... ...|+...+..++|+.++++++ .+ ..++++|+++++.
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 457899887654 3456676666653321 2248888899999999999863 21 2255555667777
Q ss_pred HHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHH----HHhcCCCCCccCCceeEEEEe
Q 018243 68 ISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIE----AAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 68 ~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~~v~i~ 143 (359)
.++.+++ ++|+.|++++|+|..... .+...|.+++.++.+.++. +...+. ...... .+...+++.
T Consensus 109 ~~~~~l~-~~gd~v~~~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~ 177 (403)
T d1wsta1 109 LIGRVFL-NPGDPIVVEAPTYLAAIQ---AFKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQG------KRVKIVYTV 177 (403)
T ss_dssp HHHHHHC-CTTCEEEEEESCCHHHHH---HHHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHTT------CCCCEEEEC
T ss_pred HHHHHHh-hcCCccccCCCcchhhhH---HHhhccccceeEeecccCC-ccccccccchhhhhcc------ccccccccc
Confidence 7777777 599999999999777553 4678888988887654432 222222 222211 233344444
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh--cCc-c-EEEEeccccCCCcee-eEEe
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV--QAA-D-SASVCLSKGLGAPVG-SVIV 218 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~--~~~-d-~~~~s~~K~~g~~~g-g~~~ 218 (359)
+.++||||.+++.+++++|+++|++|+++||+||+|....+ .+.+...+. ... . +++.|+||+++.+.. ||++
T Consensus 178 ~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i 255 (403)
T d1wsta1 178 STFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRY--SGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVA 255 (403)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC--SSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEE
T ss_pred cccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheec--CCCCCCcccccCCCCcEEEEccccceecCcccccccc
Confidence 77888999999999999999999999999999999643322 232222221 122 2 444599999963233 9999
Q ss_pred cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHH---HHHHhHHHHhhhHHHHHHHHHHHHhcC--CCceEecCCccceEEE
Q 018243 219 GSKEFIKKARRLRKTLGGGMRQVGVLCAAALV---ALQENVLVMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVETNIVY 293 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~~~~~~~ 293 (359)
+++++++.+...........+.......++.. ..+.++++.++.+.++++.+.+.|.+. .++.+. .+.+++++|
T Consensus 256 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~p~gg~~~~ 334 (403)
T d1wsta1 256 AHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWT-KPEGGMFVR 334 (403)
T ss_dssp ECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC-CCSBSSEEE
T ss_pred cchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEe-CCCceeEEE
Confidence 99999998877665554444333333333322 224445556666777778888888774 356653 456899999
Q ss_pred EEeccchHHHHHHHHHHHHhcCceeccCC--------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 018243 294 FEITEDSKLYAACLLKKLEEHGVLVMPES--------STRVRIVVHHQISANDVHYTLSCFQKIYAGVCEE 356 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~--------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 356 (359)
+.++.. .+.+.+.+.|.++||.++|++ .+++||+++ ..+++++++++++|++++++..++
T Consensus 335 ~~~~~~--~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~-~~~~~~l~~al~rl~~~l~~~~k~ 402 (403)
T d1wsta1 335 VTLPEG--IDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT-YVPEETIREGVRRLAETIKEEMKR 402 (403)
T ss_dssp EECCTT--CCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCC--CCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999863 577789999999999997752 468999986 478999999999999999987654
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-32 Score=240.53 Aligned_cols=329 Identities=16% Similarity=0.165 Sum_probs=237.4
Q ss_pred cccccccCCCCCChH-HHHHHHHHcCCCCC---CccCCChHHHHHHHHHHHHh----CCCC----eEEcCC-chHHHHHH
Q 018243 3 TRTVDLRSDTVTKPT-EAMRAAMASAEVDD---DVLMHDPTAFRLETEMAKVM----GKEA----GLFVPS-GTMGNLIS 69 (359)
Q Consensus 3 ~~~id~~~~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~----~~~~----~~~~~~-gt~a~~~~ 69 (359)
+.+|||..+.+..|. +.+.+++.++.... ..|+...+..+|++.+++++ |.+. .+++++ +++++..+
T Consensus 25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~ 104 (418)
T d1w7la_ 25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA 104 (418)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHH
Confidence 457999999876554 77888888766542 24777888999999999886 4431 255555 55777777
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC------------CCCCCCHHHHHHHhcCCCCCccCCce
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN------------QDGTMDIDLIEAAIRDPKGEIVYPTT 137 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------------~~~~~~~~~l~~~l~~~~~~~~~~~~ 137 (359)
+.+++ .+|+.|+++.|+|.. +. ..+...|.+++.++.. .++.+|.+++..... +.+
T Consensus 105 ~~~l~-~~g~~vlv~~p~~~~-y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------~~~ 172 (418)
T d1w7la_ 105 FQALV-DEGDEVIIIEPFFDC-YE--PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT--------SRT 172 (418)
T ss_dssp HHHHC-CTTCEEEEEESCCTT-HH--HHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC--------TTE
T ss_pred HHhhc-cCCceeeccccccch-hH--HHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc--------ccc
Confidence 77777 599999999999665 43 3477778787766432 234567778877766 788
Q ss_pred eEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhc-CchhHhhhcCcc-E-EEEeccccCCCcee
Q 018243 138 RLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVAL-GVPVRRLVQAAD-S-ASVCLSKGLGAPVG 214 (359)
Q Consensus 138 ~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~~~~~~~~d-~-~~~s~~K~~g~~~g 214 (359)
+++++ +++|||||.+++.+++++|.++|++++++||+|++|....+... ..+...+....+ + ++.|+||.++.|+.
T Consensus 173 ~~i~~-~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~ 251 (418)
T d1w7la_ 173 KALVL-NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 251 (418)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred cceec-cCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCC
Confidence 88888 56677999999999999999999999999999999754333211 123333332233 4 44599999987644
Q ss_pred --eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH----------HHhHHHHhhhHHHHHHHHHHHHhcCCCceE
Q 018243 215 --SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL----------QENVLVMLDGDHKKAKLLAEGLNQLKGLRV 282 (359)
Q Consensus 215 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 282 (359)
||+++++++++.++........+.+.. ...++...+ .......++.+.++++.+.+.|++. |+++
T Consensus 252 RvG~~v~~~~~~~~l~~~~~~~~~~~~~~--~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~ 328 (418)
T d1w7la_ 252 KVGWVLGPDHIMKHLRTVHQNSVFHCPTQ--SQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKP 328 (418)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTSCCCHH--HHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred cccccccchhhhhhhccccccccccccch--hhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCcc
Confidence 999999999999888777666555333 223333232 1233446667888899999999998 9987
Q ss_pred ecCCccceEEEEEeccc-----------hHHHHHHHHHHH-HhcCceeccCC-----------CcEEEEEeCCCCCHHHH
Q 018243 283 DVDAVETNIVYFEITED-----------SKLYAACLLKKL-EEHGVLVMPES-----------STRVRIVVHHQISANDV 339 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l-~~~gi~~~~~~-----------~~~lRi~~~~~~~~~~i 339 (359)
.. |.+++++|+.++.. ...+..+++++| +++||.++|+. .+++||++ ..+++++
T Consensus 329 ~~-P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~--~~~~~~l 405 (418)
T d1w7la_ 329 LI-PQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF--VKDEATL 405 (418)
T ss_dssp EE-CSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC--CCCHHHH
T ss_pred cC-CCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEE--cCCHHHH
Confidence 54 56899999988631 012356777776 88999998762 45799998 4689999
Q ss_pred HHHHHHHHHHH
Q 018243 340 HYTLSCFQKIY 350 (359)
Q Consensus 340 ~~~~~~l~~~~ 350 (359)
++++++|+++.
T Consensus 406 ~~a~~rl~~~~ 416 (418)
T d1w7la_ 406 QAMDEKLRKWK 416 (418)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-32 Score=241.13 Aligned_cols=326 Identities=16% Similarity=0.107 Sum_probs=238.5
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHh----CCC----CeEEc-CCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVM----GKE----AGLFV-PSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----~~~----~~~~~-~~gt~a~~~~l~~ 72 (359)
..|||+.+.+..|. +.+++++.++... ...|+..++..+||+.+++++ |.+ ..+++ +++++++..++.+
T Consensus 27 ~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~ 106 (382)
T d1u08a_ 27 QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITA 106 (382)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHH
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhh
Confidence 46999999886555 6777877664433 346888888999999999876 432 22554 5555677777777
Q ss_pred hhhhcCCeEEecCCCcceeeccccccccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 73 HCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
++ .+|+.|++++|+|+.... .....|.....++.+ .++.+|.++++..++ ++++++++.+ +|||||
T Consensus 107 l~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~--------~~~~~i~l~~-P~NPtG 173 (382)
T d1u08a_ 107 LV-RNGDEVICFDPSYDSYAP---AIALSGGIVKRMALQPPHFRVDWQEFAALLS--------ERTRLVILNT-PHNPSA 173 (382)
T ss_dssp HC-CTTCEEEEEESCCTTHHH---HHHHTTCEEEEEECCTTTCCCCHHHHHHHCC--------TTEEEEEEES-SCTTTC
T ss_pred cc-cccceEEEecccccchhh---hhhhccccceecccccccccCCHHHHhhhhc--------cCccEEEECC-CCcccc
Confidence 77 599999999999877553 366667666666444 456789999999888 7899999854 567999
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhhcCc--cEEEEeccccCCCcee--eEEecCHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQAA--DSASVCLSKGLGAPVG--SVIVGSKEFIKK 226 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~--d~~~~s~~K~~g~~~g--g~~~~~~~~~~~ 226 (359)
.+++.+++++|.++|++++++++.|+.+......... .......... -++..|+||.++.|+. ||+++++++++.
T Consensus 174 ~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~ 253 (382)
T d1u08a_ 174 TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAE 253 (382)
T ss_dssp CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHH
T ss_pred cccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHH
Confidence 9999999999999999999999999986443332111 1111111122 2555699999987644 999999999999
Q ss_pred HHHHHHhhCCCcchhHHHHHHHHHHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHH
Q 018243 227 ARRLRKTLGGGMRQVGVLCAAALVAL---QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLY 303 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+.........+.+. ..+.++...+ +.+....++.+.++++.+.+.++.. |+.+. ++.++.++|++++.....+
T Consensus 254 ~~~~~~~~~~~~~~--~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-~p~gg~~~~~~~~~~~~~d 329 (382)
T d1u08a_ 254 IRKVHQYLTFSVNT--PAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEIL-PCEGTYFLLVDYSAVSTLD 329 (382)
T ss_dssp HHHHHHHHTSSCCH--HHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEEC-CCCBSSEEEEECTTTCCSC
T ss_pred HHhhhccccccccc--ccccccccccccchHHHHHHHHHHHhhhhhhhhhhccC-CcEEe-cCCceEEEEEecCCCCCCC
Confidence 88777766665533 3333443344 3445556777888889999988876 88874 4678999999998532357
Q ss_pred HHHHHHHH-HhcCceeccC--------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 304 AACLLKKL-EEHGVLVMPE--------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~--------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
..+|+++| +++||.++|+ +.+++||++. .+++++++++++|++
T Consensus 330 ~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 330 DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 78888887 7899999776 2357999994 688999999988865
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=4e-31 Score=228.93 Aligned_cols=336 Identities=20% Similarity=0.274 Sum_probs=244.8
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCe
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
++.+||+|+|+.+++|++++||.++..+ ...|+.++...++|+.+++++|.+.. ++++|||+|+..++..++. .++.
T Consensus 2 ~~~~~f~s~n~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~-~~~~ 80 (345)
T d1v72a1 2 PPALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP-PWGN 80 (345)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC-TTEE
T ss_pred CCCcCcCCCCCCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh-cCCc
Confidence 5789999999999999999999987655 35678889999999999999999876 5679999999999998884 8888
Q ss_pred EEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 81 vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
+++....|.+...........+..+..+....++.++++.+++.+.+..... ..+..++++....++++...+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (345)
T d1v72a1 81 IYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDV--HTTQPACVSITQATEVGSIYTLDEIE 158 (345)
T ss_dssp EEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCT--TSCEEEEEEEESSCTTSCCCCHHHHH
T ss_pred cccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhccccccc--ccccceeeeeeccccccccccchhhh
Confidence 8888888888776443345566666666666778889999999998543222 23444444456666888888999999
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhh--hcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCc
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL--VQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~--~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
++.++|++||+++++|+++..+............ ....+.++.+.+|..+...+..+.................+.+.
T Consensus 159 ~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (345)
T d1v72a1 159 AIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLS 238 (345)
T ss_dssp HHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCC
T ss_pred hHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhcccccccccccc
Confidence 9999999999999999998665554333332222 22344566677776655455545555554444443334444444
Q ss_pred chhHHHHHHHHHHHHHh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 239 RQVGVLCAAALVALQEN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
......+++....+... ......+..++.+++.+.+.+++++.+.. +..++++++.++. ++.+.|.++||.
T Consensus 239 ~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~-p~~~niv~~~~~~-------~~~~~L~~~gi~ 310 (345)
T d1v72a1 239 SKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLDS-------AMIDALLKAGFG 310 (345)
T ss_dssp SSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEES-CCCSSEEEEEECH-------HHHHHHHHTTCB
T ss_pred chhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEecc-CCCccEEEEEcCH-------HHHHHHHHcCCC
Confidence 33444434434444322 22355556677888899999999998754 5678999998865 567789899988
Q ss_pred ec--cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 318 VM--PESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 318 ~~--~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+. +.+...+||+++..+|+||+|+++++|+++
T Consensus 311 v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 311 FYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp CBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 73 446789999999999999999999999864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.98 E-value=8.6e-30 Score=226.57 Aligned_cols=336 Identities=18% Similarity=0.232 Sum_probs=236.5
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
-+|||.||+.+.+. +.+..++. .++..|+.+|...+||+.+++++|.+++++++||++|+..++.+++ ++|+.|+
T Consensus 43 v~iDl~sDs~t~am~~~~~aa~~---~GDd~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~-~~Gd~Vi 118 (456)
T d1c7ga_ 43 IYIDLLTDSGTNAMSDKQWAGMM---IGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAI-KPGQYVA 118 (456)
T ss_dssp CSEECSCSSSCCCEEHHHHHHTT---SCCCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC-CTTEEEE
T ss_pred eeeEcccCCCcccchHHHHHHHh---ccchhccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhc-CCCCeEe
Confidence 36999999998874 66666553 4788999999999999999999999999999999999999999998 6999888
Q ss_pred ecCCCcceeeccccccccCCccceeee----------cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCce
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVK----------NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGR 152 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~ 152 (359)
.....+.+.. .....|..++.+. ...++.+|++.|++.++... ...+.++++++++|..+|.
T Consensus 119 ~~~~f~~~~~----~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~----~~~~~~i~~e~~~n~~gG~ 190 (456)
T d1c7ga_ 119 GNMYFTTTRF----HQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG----AENIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp ESSCCHHHHH----HHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC----GGGEEEEEEESSBTTTTSB
T ss_pred cCcchHHHHH----HHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcC----CccceeEEeeecccccccc
Confidence 7654322211 1333444443331 23457889999999998421 1456788898888877889
Q ss_pred ecChhhHHHHHHHHHHcCcEEEEecccccchhhh--------cCchhHh----hhcCccEEEEeccccCCCceeeEEec-
Q 018243 153 CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--------LGVPVRR----LVQAADSASVCLSKGLGAPVGSVIVG- 219 (359)
Q Consensus 153 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--------~~~~~~~----~~~~~d~~~~s~~K~~g~~~gg~~~~- 219 (359)
+++.+++++|.++|++||+.+|+|+++.++.... .+.+..+ ....+|++++|++|.++++.||+++.
T Consensus 191 ~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~ 270 (456)
T d1c7ga_ 191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMN 270 (456)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEES
T ss_pred eecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcC
Confidence 9999999999999999999999999987665321 2223332 23478999999999999888887775
Q ss_pred CHHHHHHHHHHHHhhCCCcc---hhHHHHHHHHHHHHHh-HHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 220 SKEFIKKARRLRKTLGGGMR---QVGVLCAAALVALQEN-VLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
++++.++++......++... .......+....+.+. ..+..++..++.++|.+.|++. |+.+.. +..+..+++.
T Consensus 271 ~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~-g~~vv~-p~g~~~v~vd 348 (456)
T d1c7ga_ 271 DEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA-GVPIVE-PTGGHAVFLD 348 (456)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS-SCCSSEEEEE
T ss_pred CHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-cCCccc-CCCCcceeEe
Confidence 67787887766554433221 1222222323333221 1235566677889999999998 887754 4466666654
Q ss_pred ecc------chHHHHHHHHHHH-HhcCceeccC-----------------CCcEEEEEeC-CCCCHHHHHHHHHHHHHHH
Q 018243 296 ITE------DSKLYAACLLKKL-EEHGVLVMPE-----------------SSTRVRIVVH-HQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 296 ~~~------~~~~~~~~~~~~l-~~~gi~~~~~-----------------~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~ 350 (359)
... ........+...| .+.||...+. ....+|++++ ...|++++|+++++|+++.
T Consensus 349 a~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~ 428 (456)
T d1c7ga_ 349 ARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp HHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred chhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHH
Confidence 221 0112445555555 7889875221 2345999975 3459999999999999988
Q ss_pred HHH
Q 018243 351 AGV 353 (359)
Q Consensus 351 ~~~ 353 (359)
++.
T Consensus 429 ~~~ 431 (456)
T d1c7ga_ 429 QHK 431 (456)
T ss_dssp TTG
T ss_pred hhh
Confidence 654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.7e-30 Score=227.74 Aligned_cols=331 Identities=15% Similarity=0.212 Sum_probs=225.5
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccCC------------ChHHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLMH------------DPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISV 70 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l 70 (359)
.|.|++.-.+++++.++++|.+.......|+. ....+++|+.+++++|.+.. ++++|+|+++..++
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~ 82 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAI 82 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence 46777777778889999999987654443332 12346788999999999853 67777788877777
Q ss_pred HHhh---hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 71 LVHC---ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 71 ~~~~---~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.++. .++|++|+++++.|.+.......++..|+++..++.+.++.+|++++++.++ ++|++|+++++ +
T Consensus 83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~--------~~T~lv~is~~-~ 153 (391)
T d1p3wa_ 83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR--------DDTILVSIMHV-N 153 (391)
T ss_dssp HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC--------TTEEEEECCSB-C
T ss_pred hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC--------CCcEEEEEECC-C
Confidence 6653 3699999999999988754112234568999999988889999999999999 89999999554 4
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKA 227 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~ 227 (359)
||||..+| +++|.++|+++|+++++|++|++|... .....+ ++|++++|.+|++|.+..|+++.+++.....
T Consensus 154 n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~---~d~~~~--~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~ 225 (391)
T d1p3wa_ 154 NEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP---IDLSQL--KVDLMSFSGHKIYGPKGIGALYVRRKPRVRI 225 (391)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBC---CCTTTS--CCSEEEEESTTTTSCSSCEEEEECBTTBCCC
T ss_pred CCCeeECC---HHHHHHHhccCCcEEEEeeccccCCcc---ccchhc--cccccccccccccCCCceEEEEEecchhccc
Confidence 59999998 789999999999999999998776542 233333 7899999999998754448777766544332
Q ss_pred HHHHH------hhCCCcchhHHHHHH--HHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC--ccceEEEEEec
Q 018243 228 RRLRK------TLGGGMRQVGVLCAA--ALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--VETNIVYFEIT 297 (359)
Q Consensus 228 ~~~~~------~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~~~~~~~~~~~ 297 (359)
..... .............+. .............++..+...++.+.|.++++..+.... ....++.+.++
T Consensus 226 ~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
T d1p3wa_ 226 EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN 305 (391)
T ss_dssp CCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEET
T ss_pred CCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeC
Confidence 11100 000111111111111 111112222224556667788888999888666553221 22334455555
Q ss_pred cchHHHHHHHHHHHHhcCcee----ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 298 EDSKLYAACLLKKLEEHGVLV----MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 298 ~~~~~~~~~~~~~l~~~gi~~----~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
. ...+.+...|.+.+|.. .+. ..+++|++++..+|++|+++++++|+++++++++
T Consensus 306 ~---~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 306 Y---VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp T---SCHHHHHHHTTTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CChHHHHHHhCCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 36666777765433321 000 1246999999999999999999999999998864
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.4e-29 Score=223.54 Aligned_cols=326 Identities=15% Similarity=0.129 Sum_probs=235.8
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCC----CC--ccCC----ChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVD----DD--VLMH----DPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVL 71 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~----~~--~~~~----~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~ 71 (359)
.+.|.+...+.+++.+.+++.+.... .. .+.. ....++.|+.+++++|... .+++.|+|+++..++.
T Consensus 23 ~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~ 102 (405)
T d1jf9a_ 23 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVAN 102 (405)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHh
Confidence 46788877777777777777653211 11 1111 2345788899999999643 3677788888887776
Q ss_pred H---hhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 72 V---HCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 72 ~---~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
. ...++|+.|++.+..|.+..... ..++..|++++.++.+.++.+|++.+++.++ ++|++|.+++..+
T Consensus 103 ~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~--------~~t~lv~~~~v~~ 174 (405)
T d1jf9a_ 103 SWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD--------EKTRLLAITHVSN 174 (405)
T ss_dssp HHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCC--------TTEEEEEEESBCT
T ss_pred cccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhcc--------CCcEEEEEecCCC
Confidence 6 33468999999999998876411 1235678999999999999999999999999 8999999966665
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~ 226 (359)
.||...| +++|.++|+++|+++++|.+|+.|.. ......+ ++|++++|+|||+| |.| |+++.+++..+.
T Consensus 175 -~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~---~id~~~~--~~D~~~~s~hK~~G-p~G~g~l~v~~~~~~~ 244 (405)
T d1jf9a_ 175 -VLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL--DCDFYVFSGHKLYG-PTGIGILYVKEALLQE 244 (405)
T ss_dssp -TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH--TCSEEEEEGGGTTS-CSSCEEEEECHHHHTT
T ss_pred -cccccCc---hHHhhhHHHHcCCeeecccceecccc---ccchhhc--CCceeecccccccc-CCCceeeeechhhhcc
Confidence 8999999 89999999999999999999876544 3334444 89999999999986 666 899999887665
Q ss_pred HHHHHH----------------------hhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCc
Q 018243 227 ARRLRK----------------------TLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGL 280 (359)
Q Consensus 227 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~ 280 (359)
+..... ...++.. .....+...+++ ...+...++.....+++.+.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~--~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~ 322 (405)
T d1jf9a_ 245 MPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPN--TGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDL 322 (405)
T ss_dssp CCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCC--HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred cCcccccccccCccccccccccccchhhhcCCCCc--HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcc
Confidence 321110 0112221 122222233332 233435555666778888888888676
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------------CCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------SSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
....+...++++.+.++. .++.++...|.++||.+..+ .++.+|+|++.+++++|+++++++|++
T Consensus 323 ~~~~~~~r~~ivsf~~~~---~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~ 399 (405)
T d1jf9a_ 323 TLYGPQNRLGVIAFNLGK---HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQR 399 (405)
T ss_dssp EEESCTTCCSEEEEEETT---CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cccCCcCcCcEEEEEcCC---CCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666555567788888876 36778888999999988543 246799999999999999999999998
Q ss_pred HHHHH
Q 018243 349 IYAGV 353 (359)
Q Consensus 349 ~~~~~ 353 (359)
+++-+
T Consensus 400 i~r~~ 404 (405)
T d1jf9a_ 400 IHRLL 404 (405)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88754
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=4.2e-30 Score=224.58 Aligned_cols=318 Identities=16% Similarity=0.219 Sum_probs=215.1
Q ss_pred HHHHHHHHHcCCCCCC--cc---------CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecC
Q 018243 17 TEAMRAAMASAEVDDD--VL---------MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGD 85 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~--~~---------~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~ 85 (359)
+|++++++.+.-.+.. .| ...+....+|+.+++++|.+..++++||++|+..++.+++ ++||+|+++.
T Consensus 15 ~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~-~~gd~Vi~~~ 93 (364)
T d2e7ja1 15 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLA-KKDAWVVMDE 93 (364)
T ss_dssp CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHC-CTTCEEEEET
T ss_pred CHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHh-CCCcEEEeec
Confidence 4788888876422210 01 1124568899999999999999999999999999999998 5999999999
Q ss_pred CCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHH
Q 018243 86 NSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVG 163 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~ 163 (359)
++|++.+. + +...|++++.++.+ .++.+|++++++.+++.... .++++|+++++. ||||.+.| +++|.
T Consensus 94 ~~h~s~~~-~--~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~---~~~~lv~i~~~~-n~tG~~~~---l~~I~ 163 (364)
T d2e7ja1 94 NCHYSSYV-A--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR---GEVVLALITYPD-GNYGNLPD---VKKIA 163 (364)
T ss_dssp TCCHHHHH-H--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT---SCEEEEEEESSC-TTTCCCCC---HHHHH
T ss_pred ccccccch-H--HHhccceEEEeeeccccccccCHHHHHhhhhhhccc---CCceEEEeecCC-CCCceeec---chhhe
Confidence 99999886 3 67789999988765 35789999999999742111 356678885554 49999877 89999
Q ss_pred HHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh--------h
Q 018243 164 EIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT--------L 234 (359)
Q Consensus 164 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~--------~ 234 (359)
++|++||+++|+|++|+.+.. +.....+ ++|++++|+||+++++.+ |+++.++++.+.+...... .
T Consensus 164 ~ia~~~~i~livD~a~~~g~~---~~~~~~~--g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (364)
T d2e7ja1 164 KVCSEYDVPLLVNGAYAIGRM---PVSLKEI--GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELL 238 (364)
T ss_dssp HHHHTTTCCEEEECTTTBTTB---CCCHHHH--TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGT
T ss_pred eccccccchhhccccchhhhh---hhccccc--ccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCccccccc
Confidence 999999999999999866543 3334444 789999999999998765 8899888776653221111 1
Q ss_pred CCCcchhH-HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC-CccceEEEEEeccchHH------HHHH
Q 018243 235 GGGMRQVG-VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD-AVETNIVYFEITEDSKL------YAAC 306 (359)
Q Consensus 235 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~------~~~~ 306 (359)
+.+..... ....++.....+..+ ...+..++++++.+.|+++ |+..... +......++..+..... ....
T Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (364)
T d2e7ja1 239 GCTARGATIITLMASFPHVRERIK-RWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFF 316 (364)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGH
T ss_pred ccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccchH
Confidence 11111111 111112222222222 2334456778888999888 7765432 23344445544321000 1223
Q ss_pred HHHHHHhcCcee-ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV-MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l~~~gi~~-~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+...|...|+.. .++....+|++. +..+++++++++++|+++++++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~~~~~~-~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 317 LYRELKSRKIHGIKPGLTRYFKLST-YGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHHTTEECSCTTCCSEEEEEC-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCceecCCCcceEEEec-cCCCHHHHHHHHHHHHHHHHHh
Confidence 455667777765 345556677764 3689999999999999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.8e-29 Score=221.37 Aligned_cols=296 Identities=18% Similarity=0.212 Sum_probs=224.0
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC
Q 018243 33 VLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ 112 (359)
Q Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 112 (359)
.+..++...++|+.+++++|.+++++++|||+|+..++.++..++||+|+++..+|.+... + ....|.+++.++.+.
T Consensus 26 ~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~-a--i~~~g~~pv~~d~~~ 102 (376)
T d1mdoa_ 26 WITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLN-M--IVLLGANPVMVDVDR 102 (376)
T ss_dssp CCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHH-H--HHHTTCEEEEECBCT
T ss_pred CCcCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccccccccc-c--hhccccceeeecccc
Confidence 3456789999999999999999999999999999999999855799999999999988876 2 667788999997764
Q ss_pred -CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchh
Q 018243 113 -DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPV 191 (359)
Q Consensus 113 -~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 191 (359)
++.+|+++|++.++ ++|++|+++|. .|...+ +++|.++|+++|+++|+|+||++|... .+...
T Consensus 103 ~~~~~d~~~l~~~i~--------~~tkaIi~~h~----~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~-~~~~~ 166 (376)
T d1mdoa_ 103 DTLMVTPEHIEAAIT--------PQTKAIIPVHY----AGAPAD---LDAIYALGERYGIPVIEDAAHATGTSY-KGRHI 166 (376)
T ss_dssp TTCCBCHHHHHHHCC--------TTEEEECCBCG----GGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE-TTEET
T ss_pred cccCCCHHHHHHhcC--------CCCeEEEEeCC----CCCccc---hhHHHHHHHhcCceEEeccchhccCee-CCeec
Confidence 57899999999999 78999988653 466555 899999999999999999999887653 23333
Q ss_pred HhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh----------------------hCCCcchhHHHHHHH
Q 018243 192 RRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT----------------------LGGGMRQVGVLCAAA 248 (359)
Q Consensus 192 ~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 248 (359)
... +..+++++.+|.++.+.||+++. ++++.++++.++.. .+.+..++...++.+
T Consensus 167 g~~--g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~ 244 (376)
T d1mdoa_ 167 GAR--GTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIA 244 (376)
T ss_dssp TSS--SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHH
T ss_pred ccc--cCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhh
Confidence 222 34466677889998777776555 67777777665432 234555677788888
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc---ceEEEEEeccc--hHHHHHHHHHHHHhcCceeccC--
Q 018243 249 LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE---TNIVYFEITED--SKLYAACLLKKLEEHGVLVMPE-- 321 (359)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~~~-- 321 (359)
...++...+ ..++..++++++.+.|++++...+...... ....++..... .+.+.+++.++|.++||.+...
T Consensus 245 ~~qL~~~~~-~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~ 323 (376)
T d1mdoa_ 245 LAQLQKLDA-LNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFR 323 (376)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCC
T ss_pred hhhhhhhhH-HHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECc
Confidence 888877655 778889999999999999855544322111 11222222221 1124568999999999987321
Q ss_pred -----------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 322 -----------------------SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 322 -----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
....+.+++++.++++|++++++.|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 324 AAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp CGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred chhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 12359999999999999999999999865
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=1.6e-30 Score=228.65 Aligned_cols=325 Identities=17% Similarity=0.154 Sum_probs=225.5
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCC-----CCCccCC----ChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEV-----DDDVLMH----DPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~----~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~ 72 (359)
+.+.|.+...+.++..+++++.+... +...+.. .+...++|+.+++++|.+. .++++|||+++..++.+
T Consensus 7 ~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~ 86 (381)
T d1elua_ 7 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG 86 (381)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchh
Confidence 45667777666666667777665321 1111111 2335678899999999864 47788889999999988
Q ss_pred hhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCC--CHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 73 HCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTM--DIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 73 ~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
+..++|++|++++..|.+..... ...+..|+++..++.+.+... +.+.+++.++ +++++++++++ +|+
T Consensus 87 l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~--------~~t~~v~i~~~-~n~ 157 (381)
T d1elua_ 87 LDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--------PKTRLVILSHL-LWN 157 (381)
T ss_dssp SCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC--------TTEEEEEEESB-CTT
T ss_pred hhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc--------ccccccccccc-ccc
Confidence 86679999999999998765411 224457888888875543322 2455666666 78999999665 559
Q ss_pred CceecChhhHHHHHHHHHHc----CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHH
Q 018243 150 GGRCLSVEYTDSVGEIAKKH----GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFI 224 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~----~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~ 224 (359)
||...| +++|.++|+++ ++++++|++|+.+... .....+ ++|++++|+||++++|.| |+++.+++..
T Consensus 158 tG~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~---~~~~~~--~~D~~~~s~~K~~~~p~G~g~l~~~~~~~ 229 (381)
T d1elua_ 158 TGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LDFSRL--EVDYYAFTGHKWFAGPAGVGGLYIHGDCL 229 (381)
T ss_dssp TCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CCTTTS--CCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred ccccch---hhHHHHHHhhccccccccccccccccccccc---cccccc--ccccccccccccccccchhhHHHhhHHHH
Confidence 999999 68888888874 6999999998765442 223333 789999999999998888 8888887766
Q ss_pred HHHHHHHH----------------------hhCCCcchhHHHHHHHHHHHHH-----hHHHHhhhHHHHHHHHHHHHhcC
Q 018243 225 KKARRLRK----------------------TLGGGMRQVGVLCAAALVALQE-----NVLVMLDGDHKKAKLLAEGLNQL 277 (359)
Q Consensus 225 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~l~~~l~~~ 277 (359)
+.+..... ...++. ......+...+++. ..+.+.++..++++++.+.|+++
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 307 (381)
T d1elua_ 230 GEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS--AYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL 307 (381)
T ss_dssp GGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCcccccccccccccccccccccccccccccccc--cchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcC
Confidence 55321100 001111 11122222233321 12334567778899999999999
Q ss_pred CCceEecC-CccceEEEEEeccchHHHHHHHHHHHHhcCceecc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVD-AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMP-ESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 278 ~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
|++++..+ ...++++.|.+... ...+++.+.|+++||.+.. +.++++|++++..+|++|++++++.|+++
T Consensus 308 ~~~~~~~~~~~~~~~vsf~~~~~--~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 308 PHVHCLATSAPQAGLVSFTVDSP--LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp TTEEESCSSCCSSSEEEEEECSS--SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCeEecCCCCccccEEEEEcCCC--CCHHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99987533 34567888887653 3567889999999998743 45789999999889999999999999753
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.8e-29 Score=216.03 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=196.9
Q ss_pred CChHHHHHHHHHHHHhCCCC-eEEcCCch-HHHHHHHHHhhhhcCC-eEEecCCCcceeeccccccccCCccceeeecCC
Q 018243 36 HDPTAFRLETEMAKVMGKEA-GLFVPSGT-MGNLISVLVHCETRGS-EVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ 112 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~-~~~~~~gt-~a~~~~l~~~~~~~g~-~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 112 (359)
+.+...+|++++++++|.+. .+++++|+ +++..++.+++ .+|| .|+++.|+|.. +. ..+...|.+++.++.++
T Consensus 54 Pd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~-~~--~~~~~~g~~v~~~~~~~ 129 (354)
T d1fg7a_ 54 PECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGM-YS--VSAETIGVECRTVPTLD 129 (354)
T ss_dssp CCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTH-HH--HHHHHHTCEEEECCCCT
T ss_pred CCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh-cccccccccccccccc-ch--hhhhccCceeecccccc
Confidence 34455799999999999874 35555555 56666666666 5888 58889998655 44 34778898999888888
Q ss_pred CCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH
Q 018243 113 DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 113 ~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
++.+|+++++..++ ++++|++ +++|||||.+++.++++.+.+.++ ++.++|+||++. .+.... ...
T Consensus 130 ~~~~d~~~l~~~~~---------~~~~v~~-~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~--~f~~~~-~~~ 195 (354)
T d1fg7a_ 130 NWQLDLQGISDKLD---------GVKVVYV-CSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYI--EFCPQA-SLA 195 (354)
T ss_dssp TSCCCHHHHHTSCT---------TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTG--GGSGGG-CSG
T ss_pred ccccchhhhhhccc---------ccceeec-cCCCccceeEeeeccccccccccc-ccccccccccch--hhcccc-ccc
Confidence 89999999886544 6888888 556679999999999888888776 566777777742 222111 112
Q ss_pred hhh-cCccEE-EEeccccCCCcee--eEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH--H--HhHHHHhhhHH
Q 018243 193 RLV-QAADSA-SVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL--Q--ENVLVMLDGDH 264 (359)
Q Consensus 193 ~~~-~~~d~~-~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~--~~~~~~~~~~~ 264 (359)
... ....++ +.|+||.||.++. ||+++++++++.+.+....+..+. ..+..+..++ + .......+++.
T Consensus 196 ~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (354)
T d1fg7a_ 196 GWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLST----PVADIAAQALSPQGIVAMRERVAQII 271 (354)
T ss_dssp GGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSSCSCH----HHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred hhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcCccchhh----HHHHHHHHHHhhhccccccccchhhh
Confidence 221 223344 4599999997644 999999999998876554433222 2222222222 1 22223556677
Q ss_pred HHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCC-----CcEEEEEeCCCCCHHHH
Q 018243 265 KKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPES-----STRVRIVVHHQISANDV 339 (359)
Q Consensus 265 ~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~-----~~~lRi~~~~~~~~~~i 339 (359)
+.++.+.+.+.+++++.... +..++|+|++++. ..++.+.|.++||.+.+++ ++++||++ -+++++
T Consensus 272 ~~r~~l~~~l~~~~~~~~~~-p~~~~f~~~~~~~-----~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisi---gt~ee~ 342 (354)
T d1fg7a_ 272 AEREYLIAALKEIPCVEQVF-DSETNYILARFKA-----SSAVFKSLWDQGIILRDQNKQPSLSGCLRITV---GTREES 342 (354)
T ss_dssp HHHHHHHHHHHHSTTEEEEC-CCSSSEEEEEETT-----HHHHHHHHHHTTEECEECTTSTTCTTEEEEEC---CCHHHH
T ss_pred hHHHHHHHHHHhCCCcceeC-CCCceEEEEeCCC-----HHHHHHHHHHCCcEEecCCCCCCCCCEEEEEe---CCHHHH
Confidence 78889999999996665433 5688999999864 5578899999999996543 57899998 368889
Q ss_pred HHHHHHHH
Q 018243 340 HYTLSCFQ 347 (359)
Q Consensus 340 ~~~~~~l~ 347 (359)
++++++|+
T Consensus 343 ~~~l~aLk 350 (354)
T d1fg7a_ 343 QRVIDALR 350 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988886
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=5.7e-29 Score=214.13 Aligned_cols=306 Identities=14% Similarity=0.069 Sum_probs=209.6
Q ss_pred cccccccCC-CCCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCC----eEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSD-TVTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEA----GLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~-~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~----~~~~~~gt~a~~~~l~~~~~~ 76 (359)
..+|+|+.+ ++..+++.+.+++.+.... ...|.+.++..+|+++++++++.+. .+++++|++..+.. ++ +
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~---l~-~ 94 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYV---MM-L 94 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHH---HH-H
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHH---Hh-h
Confidence 346778766 4444457888887765543 2234456678999999999997542 37777777654433 33 4
Q ss_pred cCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecCh
Q 018243 77 RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156 (359)
Q Consensus 77 ~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~ 156 (359)
.+|+|++++|+|... . ..+...|++++.++.++++..+. ... .+++++++.+ ++||||.+++.
T Consensus 95 ~~d~v~i~~P~y~~~-~--~~~~~~g~~~v~v~~~~~~~~~~-----~~~--------~~~~~l~l~n-P~NPtG~~~s~ 157 (334)
T d2f8ja1 95 MFDRSVFFPPTYSCY-R--IFAKAVGAKFLEVPLTKDLRIPE-----VNV--------GEGDVVFIPN-PNNPTGHVFER 157 (334)
T ss_dssp HSSEEEECSSCCHHH-H--HHHHHHTCCEEECCCCTTSCCCC-----CCC--------CTTEEEEEES-SCTTTCCCCCH
T ss_pred hcccccccccccccc-c--cchhccCCccccccccccccccc-----ccc--------ccceEEEecc-cccccceeecH
Confidence 779999999997664 4 34778899999998776654331 112 5788888855 46699999996
Q ss_pred hhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCcc-EEEEeccccCCCcee--eEEecCHHHHHHHHHHHHh
Q 018243 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD-SASVCLSKGLGAPVG--SVIVGSKEFIKKARRLRKT 233 (359)
Q Consensus 157 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d-~~~~s~~K~~g~~~g--g~~~~~~~~~~~~~~~~~~ 233 (359)
+++.+ +.++++++|+||++.. ........... .... +++.|+||.++.++. ||+++++++++.+......
T Consensus 158 ~~l~~----~~~~~~~ii~Dd~~~~--~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~ 230 (334)
T d2f8ja1 158 EEIER----ILKTGAFVALDEAYYE--FHGESYVDFLK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP 230 (334)
T ss_dssp HHHHH----HHTTTCEEEEECTTGG--GTCCCCGGGGG-TCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCT
T ss_pred HHhhc----cccceeEEeecccchh--hcccccccccc-cCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhcc
Confidence 55544 3568999999998632 22112222111 1223 444599999986543 9999999999998777554
Q ss_pred hCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHh
Q 018243 234 LGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (359)
.+ .+......+.+.....++.++.++.+.++++++.+.|+++ |+++. ++.++|+|+.++. .+.+++.+.|.+
T Consensus 231 ~~--~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~g~f~~~~~~~---~~~~~~~~~L~~ 302 (334)
T d2f8ja1 231 FN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT--DSRGNFVFVFMEK---EEKERLLEHLRT 302 (334)
T ss_dssp TC--SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC--CCCSSEEEEECCH---HHHHHHHHHHHH
T ss_pred cc--cchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC-CCeEC--CCCceEEEEECCC---CCHHHHHHHHHH
Confidence 33 2222222222222224555556777888999999999999 88875 3467788988876 378899999999
Q ss_pred cCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 314 HGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 314 ~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+||.+.+. .+++|+++. +.+|+++++++|++
T Consensus 303 ~GI~vr~~-~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 303 KNVAVRSF-REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp TTEECEEE-TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCEECCC-CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 99988654 579999983 67888998888865
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.97 E-value=2.4e-28 Score=213.66 Aligned_cols=312 Identities=21% Similarity=0.177 Sum_probs=236.2
Q ss_pred HHHHHHcCCC-CCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecccccc
Q 018243 20 MRAAMASAEV-DDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGIS 98 (359)
Q Consensus 20 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~ 98 (359)
..+++.+... +...+..++...++|+++++++|.+++++++|||.|+..++.++..++||+|++|..+|.++.. + .
T Consensus 15 ~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~-a--i 91 (384)
T d1b9ha_ 15 ERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQ-A--A 91 (384)
T ss_dssp HHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHH-H--H
T ss_pred HHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccc-c--c
Confidence 3444444332 3334566899999999999999999999999999999999999865799999999999888775 2 6
Q ss_pred ccCCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEec
Q 018243 99 TIGGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDG 177 (359)
Q Consensus 99 ~~~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~ 177 (359)
...|.+++.++.+ .++.+|++.+++.+. +++++|++.+.. |... ++.++.++|+++++++|+|.
T Consensus 92 ~~~g~~p~~~d~~~~~~~~d~~~~~~~i~--------~~tk~i~~~~~~----g~~~---d~~~i~~~~~~~~i~lieD~ 156 (384)
T d1b9ha_ 92 QRLGAVTVPVDVDAATYNLDPEAVAAAVT--------PRTKVIMPVHMA----GLMA---DMDALAKISADTGVPLLQDA 156 (384)
T ss_dssp HHTTCEEEEECBCTTTCCBCHHHHHHHCC--------TTEEEECCBCGG----GCCC---CHHHHHHHHHHHTCCBCEEC
T ss_pred cccccccccccccccccccchhhhccccc--------cccccccccccc----cccc---ccccchhhhhhhhhhhhhhh
Confidence 6778899998765 458899999999998 899998875544 5544 48999999999999999999
Q ss_pred ccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh---------------hCCCcchh
Q 018243 178 ARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT---------------LGGGMRQV 241 (359)
Q Consensus 178 a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~ 241 (359)
+|++|... .+.....+. +..+++++.+|.++.+.||+++. ++++.+.++.++.. .|.++.++
T Consensus 157 a~a~ga~~-~g~~~g~~g-~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms 234 (384)
T d1b9ha_ 157 AHAHGARW-QGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLN 234 (384)
T ss_dssp TTCTTCEE-TTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCB
T ss_pred ceeccccc-CCEecCccc-ccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccc
Confidence 99887764 455444432 44466778899998777775554 68888887766643 34566778
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCc---cc--eEEEEEeccchHHHHHHHHHHHHhcCc
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAV---ET--NIVYFEITEDSKLYAACLLKKLEEHGV 316 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~~~gi 316 (359)
.+.++.+...|+...+ ..++.+++++++.+.|++++++.....+. .. .+..+.++.......+++.+.|.++||
T Consensus 235 ~l~Aaig~~qL~~ld~-~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI 313 (384)
T d1b9ha_ 235 EFSASVLRAQLARLDE-QIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGL 313 (384)
T ss_dssp HHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred cchhhhhhhhhhhccc-chhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccccccHHHHHHHHHHCCC
Confidence 8888888888877665 77888899999999999988875432211 11 223344443223356789999999999
Q ss_pred eeccC---------------------------------CCcEEEEEeCCCCC-HHHHHHHHHHHHHHHHH
Q 018243 317 LVMPE---------------------------------SSTRVRIVVHHQIS-ANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 317 ~~~~~---------------------------------~~~~lRi~~~~~~~-~~~i~~~~~~l~~~~~~ 352 (359)
.+... ....+.+++++.++ ++|++++++.|++++++
T Consensus 314 ~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 314 PAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp CEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 86321 11358999988887 57999999999998875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.97 E-value=8.2e-30 Score=225.09 Aligned_cols=320 Identities=14% Similarity=0.072 Sum_probs=214.5
Q ss_pred ccccccCCCC----C--ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCCC-------eEEcCCchH----
Q 018243 4 RTVDLRSDTV----T--KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKEA-------GLFVPSGTM---- 64 (359)
Q Consensus 4 ~~id~~~~~~----~--~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~-------~~~~~~gt~---- 64 (359)
..|||.-+.+ . .+.+.+++++.+.... ...|++..+..+||+++++++...+ .+++++|+.
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~ 108 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHH
Confidence 3588887632 1 2237777776654322 3468888999999999999875432 244433322
Q ss_pred --HHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 65 --GNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 65 --a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
++..++..++ .+||.|++++|+|.... .++...|++++.++. +.++..+.+.+.+.+.... ++++++
T Consensus 109 ~~~~~~~~~~l~-~pGd~Vlv~~P~y~~y~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i 179 (401)
T d7aata_ 109 LRVGANFLQRFF-KFSRDVYLPKPSWGNHT---PIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP-----EKSIIL 179 (401)
T ss_dssp HHHHHHHHHHHC-TTCCEEEEEESCCTTHH---HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC-----TTCEEE
T ss_pred HHHHHHhhHhhc-CCCceEEEecCCCcchh---hHHHHcCCeEEEEeccccccccccHHHHHHHHhcCC-----CceEEE
Confidence 3444455556 69999999999976644 458889999999865 3456678888888886421 567777
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch-----hHhhhc-Ccc-EEEEeccccCCCce
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-----VRRLVQ-AAD-SASVCLSKGLGAPV 213 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-----~~~~~~-~~d-~~~~s~~K~~g~~~ 213 (359)
++ ++++||||.+++.+++++|.++|++|+++||+|++|....+ .+.. ...... ... ++..|++|.++.++
T Consensus 180 ii-~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 256 (401)
T d7aata_ 180 LH-ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS--GDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG 256 (401)
T ss_dssp EE-SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG
T ss_pred Ee-cCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhc--CCcccchhhhhhhhhhhcccceeEeccccceeec
Confidence 77 67778999999999999999999999999999999644333 2211 111111 223 44559999998765
Q ss_pred e--eEEecCHHHHHHHHHHHH-------hhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHh
Q 018243 214 G--SVIVGSKEFIKKARRLRK-------TLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLN 275 (359)
Q Consensus 214 g--g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~ 275 (359)
. ||++++....+....... ....+. +...+.++...+ ....+..++++.++++.+.+.|+
T Consensus 257 ~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 334 (401)
T d7aata_ 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNP--PMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK 334 (401)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeecchHHHHHHHHHHHHHHHHhhcccccc--chHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 888876655554332221 111222 222222222222 23334466677888999999999
Q ss_pred cCCCc----eEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 276 QLKGL----RVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 276 ~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
++ +. .+. .+..|.|+|+.++. +++++| +++||.+.|++ ||++. ++++++++.++++|.+++
T Consensus 335 ~~-~~~~~~~~~-~~~~G~F~~~~ls~-------e~~~~L~~e~gV~~~pg~----Ris~a-~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 335 KE-GSSHNWQHI-TDQIGMFCFTGLKP-------EQVERLTKEFSIYMTKDG----RISVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HT-TCCSCCHHH-HHCCSSEEECCCCH-------HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred Hh-CCCCCcceE-CCCCeEEEecCCCH-------HHHHHHHHhCCEEECCCc----EEEec-cCCHHHHHHHHHHHHHHh
Confidence 87 32 322 34578888876543 456666 88999999985 99986 688999999999999876
Q ss_pred H
Q 018243 351 A 351 (359)
Q Consensus 351 ~ 351 (359)
+
T Consensus 401 k 401 (401)
T d7aata_ 401 K 401 (401)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.97 E-value=6.5e-28 Score=213.00 Aligned_cols=328 Identities=14% Similarity=0.153 Sum_probs=232.8
Q ss_pred ccccccCCCCCChHHHHHHHHHcCCCCC----C--ccCC----ChHHHHHHHHHHHHhCCCC--e-EEcCCchHHHHHHH
Q 018243 4 RTVDLRSDTVTKPTEAMRAAMASAEVDD----D--VLMH----DPTAFRLETEMAKVMGKEA--G-LFVPSGTMGNLISV 70 (359)
Q Consensus 4 ~~id~~~~~~~~~~~~~~~a~~~~~~~~----~--~~~~----~~~~~~l~~~la~~~~~~~--~-~~~~~gt~a~~~~l 70 (359)
++|+|.+...+.+++.+++++.+..... . .+.. ....++.|+.+++++|.+. . ++++++++++..++
T Consensus 22 ~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~ 101 (408)
T d1t3ia_ 22 PLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA 101 (408)
T ss_dssp ECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHH
Confidence 3578888877777777777775532211 1 1111 1345678899999999863 2 45556666776666
Q ss_pred HHh---hhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 71 LVH---CETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 71 ~~~---~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
..+ ..++|++|++++..|.+..... ...+..|.++..++.+.++..+.+.+++.++ ++|++|.+.+..
T Consensus 102 ~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~--------~~t~lv~i~~~~ 173 (408)
T d1t3ia_ 102 YSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS--------EKTKLVTVVHIS 173 (408)
T ss_dssp HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC--------TTEEEEEEESBC
T ss_pred hhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC--------CCceEEEEeccc
Confidence 552 3358999999999998876411 1234568888889888888899999999988 899999996665
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIK 225 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~ 225 (359)
+ .||...| +++|.++|+++|+++++|.+|+.|.. ......+ ++|++++|.|||+| |.| |+++.+++...
T Consensus 174 ~-~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~---~id~~~~--~~D~~~~s~hK~~g-p~G~g~l~v~~~~~~ 243 (408)
T d1t3ia_ 174 N-TLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI--DCDWLVASGHKMCA-PTGIGFLYGKEEILE 243 (408)
T ss_dssp T-TTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH--TCSEEEEEGGGTTS-CTTCEEEEECHHHHH
T ss_pred c-cccccCc---HHHHhhhhhccCceeeeccceecccc---ccccccc--CCceEEeccccccC-CCCccccccchhhhh
Confidence 5 7899998 78999999999999999999877654 3344455 89999999999976 555 89999988865
Q ss_pred HHHHHHH--------------------hhCCCcchhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 226 KARRLRK--------------------TLGGGMRQVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 226 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
....... .+..++. +....++...+++ ...+.+.++..++.+++.+.+++.+++.
T Consensus 244 ~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~-~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~ 322 (408)
T d1t3ia_ 244 AMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTP-AIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLR 322 (408)
T ss_dssp HSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred cCCceecCCcccccccccccccCCchhhhcCCcH-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCcccc
Confidence 5321100 0011111 1111222233332 2334355566678889999999998887
Q ss_pred EecCC----ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------------CCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 282 VDVDA----VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------------SSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 282 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------------~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
+..+. ..++++.+.++. .+..++...|.++||.+..+ ..+.+||+++.++|++|+|++++.
T Consensus 323 ~~~~~~~~~~~~~iv~f~~~~---~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~ 399 (408)
T d1t3ia_ 323 LYGPNPKHGDRAALASFNVAG---LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQS 399 (408)
T ss_dssp EESCCGGGSCBCSEEEEEETT---BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCCccccCcceEEEEEeCC---CCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHH
Confidence 75432 235677788776 47888999999999988643 245799999999999999999999
Q ss_pred HHHHHHHH
Q 018243 346 FQKIYAGV 353 (359)
Q Consensus 346 l~~~~~~~ 353 (359)
|+++++.+
T Consensus 400 L~~~~~~f 407 (408)
T d1t3ia_ 400 LQATIRFF 407 (408)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.96 E-value=2.3e-28 Score=216.47 Aligned_cols=326 Identities=13% Similarity=0.086 Sum_probs=209.4
Q ss_pred cccccccCCCC-----CCh-HHHHHHHHHcC---CCCCCccCCChHHHHHHHHHHHHhCCCC----------eEEcCCch
Q 018243 3 TRTVDLRSDTV-----TKP-TEAMRAAMASA---EVDDDVLMHDPTAFRLETEMAKVMGKEA----------GLFVPSGT 63 (359)
Q Consensus 3 ~~~id~~~~~~-----~~~-~~~~~~a~~~~---~~~~~~~~~~~~~~~l~~~la~~~~~~~----------~~~~~~gt 63 (359)
+..|||.-+.+ ..| .|.|++++... ......|++..+.++||+++++++...+ .+.+.+++
T Consensus 30 ~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (412)
T d1ajsa_ 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchh
Confidence 45688888732 122 26777765432 2224468889999999999999874321 13445555
Q ss_pred HHHHHHHHHhh------hhcCCeEEecCCCcceeeccccccccCCccceeee---cCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 64 MGNLISVLVHC------ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK---NNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 64 ~a~~~~l~~~~------~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~---~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
.+...+...+. ..+||.|++++|+|.. +. .++...|.+++.++ .+..+..|.+.+++.+....
T Consensus 110 ~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~-y~--~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~----- 181 (412)
T d1ajsa_ 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN-HN--GVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP----- 181 (412)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH-HH--HHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC-----
T ss_pred hHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh-hH--HHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc-----
Confidence 55555554431 2699999999999766 44 35778888776552 23345578887777665321
Q ss_pred CceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCch-----hHhhhc--CccEEEEeccc
Q 018243 135 PTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-----VRRLVQ--AADSASVCLSK 207 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~-----~~~~~~--~~d~~~~s~~K 207 (359)
++++++++ +++|||||.+++.+++++|+++|++||++||+||+|....+ .+.. ...... ...++..|+||
T Consensus 182 ~~~~~il~-~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~s~sk 258 (412)
T d1ajsa_ 182 EFSIFVLH-ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS--GNLEKDAWAIRYFVSEGFELFCAQSFSK 258 (412)
T ss_dssp TTCEEEEE-SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcEEEEe-cCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhc--CCcccchhhhhhhhhhcccccccccccc
Confidence 56667766 66777999999999999999999999999999999644322 2211 111111 22355569999
Q ss_pred cCCCcee--eEEecCHHHHHHHHHHH-------HhhCCCcchhHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHH
Q 018243 208 GLGAPVG--SVIVGSKEFIKKARRLR-------KTLGGGMRQVGVLCAAALV-------ALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 208 ~~g~~~g--g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++.++. ||++.+....+...... .....+............. .+...++..++++.++++.+.
T Consensus 259 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~ 338 (412)
T d1ajsa_ 259 NFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELR 338 (412)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987655 77776544333322211 1111222112222221111 122334446677888899999
Q ss_pred HHHhcCCCc----eEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 018243 272 EGLNQLKGL----RVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCF 346 (359)
Q Consensus 272 ~~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l 346 (359)
+.|+++ +. .+. .+..+.|.|+.++. +++++| .++||+++|++ ||++. +.+++++++++++|
T Consensus 339 ~~L~~~-~~~~~~~~i-~~~~G~F~~~~ls~-------~~v~~L~~e~gV~~vpg~----Ri~~a-g~~~~~i~~~a~aI 404 (412)
T d1ajsa_ 339 ARLEAL-KTPGTWNHI-TDQIGMFSFTGLNP-------KQVEYLINQKHIYLLPSG----RINMC-GLTTKNLDYVATSI 404 (412)
T ss_dssp HHHHHT-TCSSCCHHH-HHCCSSEEECCCCH-------HHHHHHHHTTCEECCTTS----EEEGG-GCCTTTHHHHHHHH
T ss_pred HHHHHh-CCCCCeeee-cCCCeEEEecCCCH-------HHHHHHHHhCCEEEeCCC----eEEec-cCCHHHHHHHHHHH
Confidence 999987 32 222 23467777765533 344555 88999999986 99986 57889999999999
Q ss_pred HHHHHHH
Q 018243 347 QKIYAGV 353 (359)
Q Consensus 347 ~~~~~~~ 353 (359)
+++++++
T Consensus 405 ~~av~~~ 411 (412)
T d1ajsa_ 405 HEAVTKI 411 (412)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.96 E-value=3.8e-27 Score=201.94 Aligned_cols=309 Identities=22% Similarity=0.248 Sum_probs=229.8
Q ss_pred CCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 12 TVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 12 ~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
++..+. ++..+.... ......|+. .|....||+.++++.|.+.+++++||..|+..++..++ ++||+|+++...|
T Consensus 35 T~~~~~~~~~~~~~~~-~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Y 112 (397)
T d1y4ia1 35 TFVFDSAEQGAARFAL-EESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-QQGDHIVSASAIY 112 (397)
T ss_dssp CCCCSSHHHHHHHHHS-CSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSC
T ss_pred CeeeCCHHHHHHhhcC-CcCCceeeCCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhcc-CCCCeeeeecccc
Confidence 444444 444443333 223445654 78899999999999999999999999999999999998 5999999999999
Q ss_pred ceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH
Q 018243 89 IHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK 167 (359)
Q Consensus 89 ~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~ 167 (359)
+..+... ......|+++..++.. |.+.+++.++ +++++||+++|.| |+..+.+ +++|+++|+
T Consensus 113 g~t~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~--------~~Tklv~~Esp~N-P~l~v~D---i~~i~~iA~ 175 (397)
T d1y4ia1 113 GCTHAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMR--------PETKVVYIETPAN-PTLSLVD---IETVAGIAH 175 (397)
T ss_dssp HHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHHH
T ss_pred cccchhhhcccCCCceEeeccCCC-----CHHHHHHhcC--------CCCcEEEecCCcc-cceeecc---cHHHHHHhh
Confidence 8876411 2245679899888765 8999999998 8999999998776 9988877 899999999
Q ss_pred HcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHH--HHHHhhCCCcchhH
Q 018243 168 KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKAR--RLRKTLGGGMRQVG 242 (359)
Q Consensus 168 ~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 242 (359)
++|+++++|.+ |. .+....++..++|+++.|.+|++++- .||+++++++.+.+.+ .++...|... ++
T Consensus 176 ~~gi~~vvDnT--~a----tP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l--~p 247 (397)
T d1y4ia1 176 QQGALLVVDNT--FM----SPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCM--SP 247 (397)
T ss_dssp HTTCEEEEECT--TT----CTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCC--CH
T ss_pred cCCceEEecCc--cc----CcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcC--CH
Confidence 99999999997 21 23334455568999999999999763 5588999988877654 4455567666 66
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHH
Q 018243 243 VLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAAC 306 (359)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 306 (359)
..++....+++...- ++++..+++..+.++|++.|.++ +..|. ..+..+.|.+.. ......+
T Consensus 248 ~~a~l~~rgl~TL~l-Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~-~~~~~~~ 325 (397)
T d1y4ia1 248 FNAWLTLRGVKTLGI-RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-GLEAGRR 325 (397)
T ss_dssp HHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT-HHHHHHH
T ss_pred HHHHHHHcCcCcHHH-HHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC-CHHHHHH
Confidence 777777888877555 88999999999999999998775 43332 246677888775 2224456
Q ss_pred HHHHHHhcCcee----------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 307 LLKKLEEHGVLV----------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 307 ~~~~l~~~gi~~----------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
|.+.|+-.++.+ .|. .++.+|+++. -|+++++++.|++++++.
T Consensus 326 f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvG----lEd~~DLi~Dl~~AL~~a 395 (397)
T d1y4ia1 326 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG----LEDPEDIINDLEHAIRKA 395 (397)
T ss_dssp HHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEec----cCCHHHHHHHHHHHHHHh
Confidence 766664322211 111 3457999985 367788888888887764
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.96 E-value=1.1e-27 Score=209.05 Aligned_cols=311 Identities=17% Similarity=0.192 Sum_probs=235.4
Q ss_pred HHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCC--eEEecCCCcceeecccccc
Q 018243 21 RAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGS--EVILGDNSHIHIYENGGIS 98 (359)
Q Consensus 21 ~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~--~vl~~~~~~~~~~~~~~~~ 98 (359)
++++.+... ...++.++...++|+.+++++|.+++++++|||.|+..++.++..++++ +|+++..++.++.. + .
T Consensus 15 ~~~v~~~l~-~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~-a--i 90 (371)
T d2fnua1 15 KKAVLEVLN-SKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATAN-M--L 90 (371)
T ss_dssp HHHHHHHHT-SSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHH-H--H
T ss_pred HHHHHHHHc-CCCccCCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccce-e--e
Confidence 344444332 2345668999999999999999999999999999999999998765554 79999999887765 2 6
Q ss_pred ccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecc
Q 018243 99 TIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA 178 (359)
Q Consensus 99 ~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a 178 (359)
...|++++.++.+.+..++.+++++.+. +++++|++.|.. |...+ ++++.++|+++|+++|+|.|
T Consensus 91 ~~~G~~pv~vDi~~~~~~~~~~~~~~~~--------~~t~avi~vh~~----G~~~~---~~~i~~~~~~~~i~lIEDaa 155 (371)
T d2fnua1 91 LESGYTPVFAGIKNDGNIDELALEKLIN--------ERTKAIVSVDYA----GKSVE---VESVQKLCKKHSLSFLSDSS 155 (371)
T ss_dssp HHTTCEEEECCBCTTSSBCGGGSGGGCC--------TTEEEEEEECGG----GCCCC---HHHHHHHHHHHTCEEEEECT
T ss_pred eccCcccccccccccccccchhhhhhcc--------chhhcccccccc----ccccc---cccccccccccchhhccchh
Confidence 6689999999888877777788887777 799999986544 66555 89999999999999999999
Q ss_pred cccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEec-CHHHHHHHHHHHHh--------------hCCCcchhHH
Q 018243 179 RIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG-SKEFIKKARRLRKT--------------LGGGMRQVGV 243 (359)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~~ 243 (359)
|++|... .+.....+. ++.++++..+|.++...||+++. ++++.+.++.++.. .|.+.+++..
T Consensus 156 qa~Ga~~-~~~~~G~~g-~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel 233 (371)
T d2fnua1 156 HALGSEY-QNKKVGGFA-LASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEI 233 (371)
T ss_dssp TCTTCEE-TTEETTSSS-SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHH
T ss_pred hccCcee-ccccCCccc-cccccccccccccccccceEEEeechhhhhhcccccccccccccccccccccccccccccch
Confidence 9887763 343333332 44466667799997767766555 78888888766553 3567778888
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC---ccceE-EEEEeccchHHHHHHHHHHHHhcCceec
Q 018243 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA---VETNI-VYFEITEDSKLYAACLLKKLEEHGVLVM 319 (359)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 319 (359)
.++.++..++...+ ..++..++++++.+.|++.+++....+. ...+. +.+.+........+++.+.|.++||.+.
T Consensus 234 ~Aaigl~qL~~l~~-~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~ 312 (371)
T d2fnua1 234 QSALGLSQLKKAPF-LMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQ 312 (371)
T ss_dssp HHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECB
T ss_pred hhhhhhhhhhhccc-hhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHHHHHHHCCCCcc
Confidence 88888988887665 7788888999999999998777753321 11222 3334443222356789999999999874
Q ss_pred cC----------------C---------CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 320 PE----------------S---------STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 320 ~~----------------~---------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+. + ...+.+++++.++++|++++++.|.+.++++
T Consensus 313 ~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 313 VHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp CCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 21 1 1258899999999999999999999998874
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=5.6e-27 Score=200.86 Aligned_cols=289 Identities=24% Similarity=0.260 Sum_probs=218.8
Q ss_pred CccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceee
Q 018243 32 DVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTV 108 (359)
Q Consensus 32 ~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v 108 (359)
..|+. .|....||+.++++.|.+.+++++||..|+..++.+++ ++||+|++++..|++++... ......|+++..+
T Consensus 51 ~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~ 129 (392)
T d1gc0a_ 51 HFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 129 (392)
T ss_dssp ------CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred ceecCCCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhhccCCcccccC
Confidence 34553 78899999999999999999999999999999999998 59999999999988875411 2345678888888
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC
Q 018243 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG 188 (359)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 188 (359)
+.. |++.++++++ +++++|+++++.| |+..+.+ +++|+++|+++|++++||.+. . . +
T Consensus 130 d~~-----d~~~~~~ai~--------~~t~lv~~Esp~N-P~l~v~D---i~~i~~ia~~~g~~~vvDnT~--a-t---P 186 (392)
T d1gc0a_ 130 DMA-----DLQALEAAMT--------PATRVIYFESPAN-PNMHMAD---IAGVAKIARKHGATVVVDNTY--C-T---P 186 (392)
T ss_dssp CTT-----CHHHHHHHCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHHGGGTCEEEEECTT--T-H---H
T ss_pred Ccc-----CHHHHHHhCC--------CCCeEEEeccccc-ceeeecc---hHHHHHHHHhcCCEEEEecCc--c-C---c
Confidence 655 8999999999 8999999988777 9999887 899999999999999999983 1 1 2
Q ss_pred chhHhhhcCccEEEEeccccCCC---ceeeEEecCHHHHHHHH--HHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhH
Q 018243 189 VPVRRLVQAADSASVCLSKGLGA---PVGSVIVGSKEFIKKAR--RLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGD 263 (359)
Q Consensus 189 ~~~~~~~~~~d~~~~s~~K~~g~---~~gg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (359)
....++..++|+++.|.+|++++ ..+|+++++++.+.+.+ ..+...|... ++..++....+++.... ++++.
T Consensus 187 ~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~--~p~da~ll~rgl~TL~l-Rm~~~ 263 (392)
T d1gc0a_ 187 YLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL--SPHDAALLMRGIKTLNL-RMDRH 263 (392)
T ss_dssp HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCC--CHHHHHHHHHHHTTHHH-HHHHH
T ss_pred cccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcC--ChhhHHHHHhccccHHH-HHHHH
Confidence 23444555999999999999976 25588889988877654 4555667776 56777788888887666 89999
Q ss_pred HHHHHHHHHHHhcCCCce-EecC---------------CccceEEEEEeccchHHHHHHHHHHHHhcCceeccC------
Q 018243 264 HKKAKLLAEGLNQLKGLR-VDVD---------------AVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE------ 321 (359)
Q Consensus 264 ~~~~~~l~~~l~~~~g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~------ 321 (359)
.+++..+.+.|++.|.++ +..| ...+..+.|.+.. .......|.+.|+-..+...-|
T Consensus 264 ~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~-~~~~~~~f~~~L~l~~~a~SlGg~eSLi 342 (392)
T d1gc0a_ 264 CANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-GIGAGRRFMNALQLFSRAVSLGDAESLA 342 (392)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-HHHHHHHHHHHCSSSEECSCCSCSSCEE
T ss_pred HHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC-CHHHHHHHHHhCCcceEeeccCCcChhh
Confidence 999999999999987765 3332 1236677788865 2234566777764222211101
Q ss_pred ---------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 322 ---------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 322 ---------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.++.||+++. + |+.+++++.|+++++.
T Consensus 343 ~~pa~~th~~~~~e~r~~~Gi~~~liRlSVG--l--Ed~eDLi~Dl~~AL~a 390 (392)
T d1gc0a_ 343 QHPASMTHSSYTPEERAHYGISEGLVRLSVG--L--EDIDDLLADVQQALKA 390 (392)
T ss_dssp ECGGGTTTSSSCHHHHHHTTCCTTEEEEECC--S--SCHHHHHHHHHHHHHH
T ss_pred cCccccccccCCHHHHHHcCCCcCeEEEEee--e--CCHHHHHHHHHHHHHh
Confidence 3457999995 3 7788888888888765
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.9e-28 Score=214.78 Aligned_cols=325 Identities=12% Similarity=0.076 Sum_probs=208.9
Q ss_pred cccccccCCCC-----CCh-HHHHHHHHHcCCC--CCCccCCChHHHHHHHHHHHHhCCCCe----------EEcCCchH
Q 018243 3 TRTVDLRSDTV-----TKP-TEAMRAAMASAEV--DDDVLMHDPTAFRLETEMAKVMGKEAG----------LFVPSGTM 64 (359)
Q Consensus 3 ~~~id~~~~~~-----~~~-~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~~~----------~~~~~gt~ 64 (359)
+..|||.-+.+ ..| .|.|++++.+... ....|++..+..++|+++++++..... +.+++|+.
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG 105 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHH
Confidence 34588886622 122 2778877765332 234588899999999999998744321 33444444
Q ss_pred HHHHHHHHh-hhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 65 GNLISVLVH-CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 65 a~~~~l~~~-~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
+...++..+ ...+||.|++++|+|.. +. .++...|.+++.++.. .++..+...+.+...+.. .++++++
T Consensus 106 ~~~l~~~~l~~~~~gd~Vlvp~P~y~~-y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~ 177 (396)
T d2q7wa1 106 ALRVAADFLAKNTSVKRVWVSNPSWPN-HK--SVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ-----AGDVVLF 177 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTH-HH--HHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC-----TTCEEEE
T ss_pred HHHHHHHHHhhcccceEEEEecCCCcc-ch--HHHHHcCCeeEecccccccccccccchHHHHHHHhc-----cCcEEEE
Confidence 444333332 22599999999999666 44 4578889899888643 344457777777665421 4566666
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc--hhHhhh--cCccEEEEeccccCCCcee--e
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLV--QAADSASVCLSKGLGAPVG--S 215 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~--~~~d~~~~s~~K~~g~~~g--g 215 (359)
+ ++++||||.+++.+++++|+++|++|+++||+||+|....+..... ...... ....++..|++|.++.++. |
T Consensus 178 ~-~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G 256 (396)
T d2q7wa1 178 H-GCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVG 256 (396)
T ss_dssp E-CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCE
T ss_pred e-cCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCcc
Confidence 6 6677899999999999999999999999999999975433221111 111111 1223555699999987655 8
Q ss_pred EEecCHHHHHHHHHHHH-------hhCCCcchhHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHHHHHhcCCCc-
Q 018243 216 VIVGSKEFIKKARRLRK-------TLGGGMRQVGVLCAAALV-------ALQENVLVMLDGDHKKAKLLAEGLNQLKGL- 280 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~- 280 (359)
|+++++...+....... ....+.......++.... .+++.++..++++.++++.+.+.|+++ +.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~ 335 (396)
T d2q7wa1 257 ACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEK-GAN 335 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT-TCC
T ss_pred ccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 88876555544433221 111222111222211111 123445557777888999999999997 43
Q ss_pred ---eEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 281 ---RVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 281 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+. .+..|.|.|+.++. +++++| .++||.+++++ ||+++ +++++++++++++|.+++
T Consensus 336 ~~~~~~-~~~~G~F~~~~l~~-------e~~~~L~~e~gV~~~~g~----Ri~~a-~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 336 RDFSFI-IKQNGMFSFSGLTK-------EQVLRLREEFGVYAVASG----RVNVA-GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp SCCTHH-HHCCSSEEECCCCH-------HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred CCccee-cCCCeEEEeeCCCH-------HHHHHHHHhCCEEECCCC----EEEec-CCCHHHHHHHHHHHHHhC
Confidence 222 23478888876643 456666 78999999887 99986 678999999999998764
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7e-28 Score=212.14 Aligned_cols=319 Identities=14% Similarity=0.116 Sum_probs=226.5
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--e-EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeec
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--G-LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYE 93 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~ 93 (359)
+|+++++|.....++..-...+...++++.+++++|.+. . +++.|||+++.+++..++ .+++++++....|++...
T Consensus 31 ~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~-~~~~~~~~~~~~~~~~~~ 109 (388)
T d1h0ca_ 31 PPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL-EPGDSFLVGANGIWGQRA 109 (388)
T ss_dssp CHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-CSSCCEEECBSSHHHHHH
T ss_pred CHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh-ccCCceeeecccceeeee
Confidence 489999998765554433334567899999999999974 3 556678999999999998 489999998888776543
Q ss_pred cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEE
Q 018243 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKL 173 (359)
Q Consensus 94 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~l 173 (359)
.......+.....+..+....+|.+++++.+.+ .+++++++.+ .+|.||...| +++|.++|+++|+++
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~n~tG~i~p---i~~i~~~~~~~g~~~ 177 (388)
T d1h0ca_ 110 -VDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ-------HKPVLLFLTH-GESSTGVLQP---LDGFGELCHRYKCLL 177 (388)
T ss_dssp -HHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHH-------HCCSEEEEES-EETTTTEECC---CTTHHHHHHTTTCEE
T ss_pred -ccccccccccccccccCCccccchHHHHHHhcc-------CCcceEEEee-eeeccccccC---HHHHHHHhhcccccc
Confidence 223445666777777777778899988888775 6788998855 4558999988 799999999999999
Q ss_pred EEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH--------------Hhh----
Q 018243 174 HIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR--------------KTL---- 234 (359)
Q Consensus 174 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~--------------~~~---- 234 (359)
++|++|+.|... .....+ ++|++++|.+|++++|.| |+++.++...+.+.... ...
T Consensus 178 ~vD~~qs~g~~~---~d~~~~--~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (388)
T d1h0ca_ 178 LVDSVASLGGTP---LYMDRQ--GIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDD 252 (388)
T ss_dssp EEECTTTTTTSC---CCTTTT--TCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSS
T ss_pred eecccccccccc---cccccc--ccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhcc
Confidence 999998776553 233333 789999999999988887 88888888776643110 000
Q ss_pred --C--CCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC--c-cceEEEEEeccchHHH
Q 018243 235 --G--GGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA--V-ETNIVYFEITEDSKLY 303 (359)
Q Consensus 235 --~--~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~--~-~~~~~~~~~~~~~~~~ 303 (359)
+ .++ .+.....+...++ +...+...++..++..++++.+... ++...... . ...++.+.++. +.+
T Consensus 253 ~~~~~~~t-~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~--~~~ 328 (388)
T d1h0ca_ 253 QPRMYHHT-IPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAVPA--GYD 328 (388)
T ss_dssp SCCCCCSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT--TCC
T ss_pred cccccccc-ccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEECCC--CCC
Confidence 0 111 1111222222223 2334445566677788888888887 65543221 1 22356677754 357
Q ss_pred HHHHHHHH-HhcCceeccC----CCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 018243 304 AACLLKKL-EEHGVLVMPE----SSTRVRIV-VHHQISANDVHYTLSCFQKIYAGVCEEN 357 (359)
Q Consensus 304 ~~~~~~~l-~~~gi~~~~~----~~~~lRi~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 357 (359)
..++.+.| .++||.+..+ ....+||+ +++..+.+|+++++++|+++++++++++
T Consensus 329 ~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 329 WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 88999998 6679988654 44689999 6678899999999999999999998754
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.96 E-value=4.6e-27 Score=207.77 Aligned_cols=323 Identities=15% Similarity=0.071 Sum_probs=206.3
Q ss_pred ccccccCCCC----CCh--HHHHHHHHHcC---CCCCCccCCChHHHHHHHHHHHHhCCCC-------eEEcC---CchH
Q 018243 4 RTVDLRSDTV----TKP--TEAMRAAMASA---EVDDDVLMHDPTAFRLETEMAKVMGKEA-------GLFVP---SGTM 64 (359)
Q Consensus 4 ~~id~~~~~~----~~~--~~~~~~a~~~~---~~~~~~~~~~~~~~~l~~~la~~~~~~~-------~~~~~---~gt~ 64 (359)
..|||.-+.+ ..| .|.|+++.... ......|++.++..++++++++++.... .+.+. +|+.
T Consensus 30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (412)
T d1yaaa_ 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchh
Confidence 4588887621 222 26777665432 2234468888999999999999874432 13322 2223
Q ss_pred HHHHHHH-HhhhhcCCeEEecCCCcceeeccccccccCCccceeeec--CCCCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 65 GNLISVL-VHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKN--NQDGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 65 a~~~~l~-~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
+...++. .....+||.|++++|+|.. +. ..+...|.+++.++. +.++..+.+.+.+.+.... +++++++
T Consensus 110 ~~~~~~~~~~~~~~gd~Vlip~P~~~~-y~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~ 181 (412)
T d1yaaa_ 110 ALHISAKFFSKFFPDKLVYLSKPTWAN-HM--AIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP-----EGSIFVL 181 (412)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCTT-HH--HHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC-----TTCEEEE
T ss_pred HHHHHHHHHhccCCCCEEecccccCch-hH--HHHHHcCCceecccccccccccccchhhhcccccCC-----CceEEEE
Confidence 3222222 2223589999999999666 44 457888989988864 3456678888887776321 3455555
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH-----h---hhc-Ccc-EEEEeccccCCC
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-----R---LVQ-AAD-SASVCLSKGLGA 211 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-----~---~~~-~~d-~~~~s~~K~~g~ 211 (359)
+ +++|||||.+++.+++++|.++|+++++++|+|++|....+ .+.... . ... ... ++..|+||.++.
T Consensus 182 i-~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 258 (412)
T d1yaaa_ 182 H-SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFAT--GDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGM 258 (412)
T ss_dssp E-CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSS--SCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCC
T ss_pred e-cCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeeccc--CCcccchhhhhhhhhccccCCCeEEEEecCCcccc
Confidence 5 77788999999999999999999999999999999643322 221111 1 111 222 445599999987
Q ss_pred cee--eEEecCHHHHHHH-----------HHHHHhhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHH
Q 018243 212 PVG--SVIVGSKEFIKKA-----------RRLRKTLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKL 269 (359)
Q Consensus 212 ~~g--g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~ 269 (359)
++. ||++++++.++.. .........+. +...+.++...+ ...++..++++.++++.
T Consensus 259 ~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 336 (412)
T d1yaaa_ 259 YGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNP--PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHA 336 (412)
T ss_dssp GGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSC--CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 8888754332211 11111122222 223333332222 23344466677888899
Q ss_pred HHHHHhcCCC----ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHH
Q 018243 270 LAEGLNQLKG----LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLS 344 (359)
Q Consensus 270 l~~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~ 344 (359)
+.+.|+++ + +.+. .+..+.|+|+.++. +++++| .++||.+.+++ ||+++ ++++++++.+++
T Consensus 337 l~~~L~~~-g~~~~~~~~-~~~gG~F~~~~ls~-------e~~~~L~~e~~V~~~~g~----Ris~~-g~~~~~i~~l~~ 402 (412)
T d1yaaa_ 337 LRDHLVKL-GTPGNWDHI-VNQCGMFSFTGLTP-------QMVKRLEETHAVYLVASG----RASIA-GLNQGNVEYVAK 402 (412)
T ss_dssp HHHHHHHH-TCSSCCTHH-HHCCSSEEECCCCH-------HHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHHH
T ss_pred HHHHHHHh-CCCCCCcee-CCCceEEEecCcCH-------HHHHHHHHhCCEEECCCC----EEEec-cCCHHHHHHHHH
Confidence 99999886 3 2332 34577777765543 456666 88999998875 99986 588899999999
Q ss_pred HHHHHHHHH
Q 018243 345 CFQKIYAGV 353 (359)
Q Consensus 345 ~l~~~~~~~ 353 (359)
+|.++++.+
T Consensus 403 ai~~v~k~~ 411 (412)
T d1yaaa_ 403 AIDEVVRFY 411 (412)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988764
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.3e-27 Score=215.02 Aligned_cols=337 Identities=18% Similarity=0.246 Sum_probs=224.8
Q ss_pred cccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 5 TVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 5 ~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|||.+++.+.+. +.+..++.. ++..|+.++...+||+.+++++|.+.+++++||++|+..++.+++. +++.+++
T Consensus 43 ~idl~sd~~t~~~~~~~~a~~~~---gd~~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~-~g~~~~~ 118 (467)
T d2v1pa1 43 FIDLLTDSGTGAVTQSMQAAMMR---GDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK-KREQEKG 118 (467)
T ss_dssp SEECSCCTTCSCCCHHHHHHTTS---CCCCSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHH-HHHHHHC
T ss_pred eeeccccccchhhHHHHHhhccc---cchhhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhh-ccceEec
Confidence 6899999888774 555555543 6778999999999999999999999999999999999999999984 5554433
Q ss_pred cCC--------CcceeeccccccccCCccceeeecCC----------CCCCCHHHHHHHhcCCCCCccCCceeEEEEecc
Q 018243 84 GDN--------SHIHIYENGGISTIGGVHPRTVKNNQ----------DGTMDIDLIEAAIRDPKGEIVYPTTRLICLENT 145 (359)
Q Consensus 84 ~~~--------~~~~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~ 145 (359)
... .|+.... +.....|..++.++.+. .+.+|+++|++.+++.. ...+++++++++
T Consensus 119 ~~~~~~i~~~~~~~~~~~--~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~~~~i~~e~~ 192 (467)
T d2v1pa1 119 LDRSKMVAFSNYFFDTTQ--GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG----PNNVPYIVATIT 192 (467)
T ss_dssp CCTTTCEEEESSCCHHHH--HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC----GGGCCCEEEESS
T ss_pred CCCCcEEEEecccccccH--HHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcC----ccccceeeecce
Confidence 332 2222222 33566777777664332 35789999999997421 145788899888
Q ss_pred ccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--------cCchh----HhhhcCccEEEEeccccCCCce
Q 018243 146 HANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--------LGVPV----RRLVQAADSASVCLSKGLGAPV 213 (359)
Q Consensus 146 ~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--------~~~~~----~~~~~~~d~~~~s~~K~~g~~~ 213 (359)
++..+|.+++.+++++|+++|++||+++|+|+||.++.... .+.+. ..+...+|++++|.+|.++++.
T Consensus 193 ~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~ 272 (467)
T d2v1pa1 193 SNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM 272 (467)
T ss_dssp BCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS
T ss_pred eeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC
Confidence 88778899999999999999999999999999997664321 12222 2233578999999999999988
Q ss_pred eeEEecCHHHHHH-HHHHHH---hh-C-CCcc-hhHHHHHHHHHHHH-HhHHHHhhhHHHHHHHHHHHHhcCCCceEecC
Q 018243 214 GSVIVGSKEFIKK-ARRLRK---TL-G-GGMR-QVGVLCAAALVALQ-ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD 285 (359)
Q Consensus 214 gg~~~~~~~~~~~-~~~~~~---~~-~-~~~~-~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 285 (359)
||+++.+++.... .+..+. .. + .... ......++....+. ...++..++..++.++|.+.|++. +..+...
T Consensus 273 gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~ 351 (467)
T d2v1pa1 273 GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQQA 351 (467)
T ss_dssp CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhc-CCcccCC
Confidence 9888876543332 222221 11 1 1111 11222222222222 112236667778899999999998 6655322
Q ss_pred CccceEEEEEe----cc--chHHHHHHHHHHH-HhcCceec-----------------cCCCcEEEEEeC-CCCCHHHHH
Q 018243 286 AVETNIVYFEI----TE--DSKLYAACLLKKL-EEHGVLVM-----------------PESSTRVRIVVH-HQISANDVH 340 (359)
Q Consensus 286 ~~~~~~~~~~~----~~--~~~~~~~~~~~~l-~~~gi~~~-----------------~~~~~~lRi~~~-~~~~~~~i~ 340 (359)
......+.. +. ........+...| .+.||... +.....+|++++ ...|++|+|
T Consensus 352 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD 429 (467)
T d2v1pa1 352 --GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMD 429 (467)
T ss_dssp --CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHH
T ss_pred --CccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHH
Confidence 222222221 11 0112233344444 78888541 224567999864 466999999
Q ss_pred HHHHHHHHHHHHHH
Q 018243 341 YTLSCFQKIYAGVC 354 (359)
Q Consensus 341 ~~~~~l~~~~~~~~ 354 (359)
+++++|++++++..
T Consensus 430 ~vv~~l~~v~~~~~ 443 (467)
T d2v1pa1 430 FIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987544
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.96 E-value=3.8e-26 Score=196.04 Aligned_cols=308 Identities=18% Similarity=0.192 Sum_probs=228.1
Q ss_pred CCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCc
Q 018243 12 TVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSH 88 (359)
Q Consensus 12 ~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~ 88 (359)
++.++. ++..+. .........|+. .|....||+.++++.|.+.+++++||..|+..++.+++ ++||+|+++...|
T Consensus 39 t~~~~~~~~~~~~-~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Y 116 (398)
T d1qgna_ 39 AYFFNKTSELIDF-KEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCY 116 (398)
T ss_dssp BBCBSSHHHHHHH-HTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSC
T ss_pred cEEeCCHHHHHHH-hcCCcCCceecCCCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcc-ccccccccccccc
Confidence 445555 444433 333334445654 78899999999999999999999999999999999988 5999999999998
Q ss_pred ceeeccc-cccccCCccceeeecCCCCCCCHHHHHH-HhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 89 IHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEA-AIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 89 ~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
++++... ......|+++..++.. +.+...+ .++ +++++||++++.| |+..+.+ +++|+++|
T Consensus 117 g~t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~--------~~t~~v~~EspsN-P~l~v~D---i~~ia~ia 179 (398)
T d1qgna_ 117 RKTRIFIETILPKMGITATVIDPA-----DVGALELALNQ--------KKVNLFFTESPTN-PFLRCVD---IELVSKLC 179 (398)
T ss_dssp HHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHH--------SCEEEEEEESSCT-TTCCCCC---HHHHHHHH
T ss_pred chhhhhhccccccccccccccccc-----chhhhhhhhcc--------ccceEEEccCccc-cccccch---HHHHHHHH
Confidence 8775311 2355577777777533 5554444 445 7999999988777 9988877 89999999
Q ss_pred HHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchhHH
Q 018243 167 KKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQVGV 243 (359)
Q Consensus 167 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (359)
+++|+++|||.+ +. .+....++..++|+++.|.+|++++- .||++..++++...++.....+|... ++.
T Consensus 180 ~~~g~~~vVDnT--~a----tP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l--~p~ 251 (398)
T d1qgna_ 180 HEKGALVCIDGT--FA----TPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGAL--NPN 251 (398)
T ss_dssp HHTTCEEEEECT--TT----CTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCC--CHH
T ss_pred hhcCCEEEecce--ee----ccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcC--CHH
Confidence 999999999998 31 23334455558999999999999764 45888899999999988888888877 667
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHH
Q 018243 244 LCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 307 (359)
.++....+++...- ++++..+++..+.+.|++.|.++ +..|. ..+..+.|.+.. ....+.+|
T Consensus 252 ~a~ll~rgl~TL~l-Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g-~~~~a~~f 329 (398)
T d1qgna_ 252 AAYLIIRGMKTLHL-RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG-DLLTTAKF 329 (398)
T ss_dssp HHHHHHHHGGGHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS-CHHHHHHH
T ss_pred HHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC-CHHHHHHH
Confidence 77777888877655 89999999999999999988775 44432 235567777765 23356677
Q ss_pred HHHHHh--cCcee--------cc-----------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 308 LKKLEE--HGVLV--------MP-----------------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 308 ~~~l~~--~gi~~--------~~-----------------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+.|+- .+... .| -.++.||+++. + |+++++++.|++++++
T Consensus 330 ~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG--l--Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 330 VDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--V--EDFDDLKADILQALDS 397 (398)
T ss_dssp HHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--S--SCHHHHHHHHHHHHHH
T ss_pred HHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec--c--CCHHHHHHHHHHHHhc
Confidence 777742 22211 00 03457999995 3 6777888888888775
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.1e-27 Score=211.14 Aligned_cols=321 Identities=15% Similarity=0.031 Sum_probs=205.1
Q ss_pred cccccCCCC-----CCh-HHHHHHHHHcCC---CCCCccCCChHHHHHHHHHHHHhCCCCe-------EEcCCchH-H--
Q 018243 5 TVDLRSDTV-----TKP-TEAMRAAMASAE---VDDDVLMHDPTAFRLETEMAKVMGKEAG-------LFVPSGTM-G-- 65 (359)
Q Consensus 5 ~id~~~~~~-----~~~-~~~~~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~~~~~~-------~~~~~gt~-a-- 65 (359)
.|||.-+.+ ..| .+.+++|..... .....|++..+..+||+++++++...+. ++++.|+. +
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (397)
T d3tata_ 28 KVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGA 107 (397)
T ss_dssp CEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHH
T ss_pred cEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHH
Confidence 478886632 122 277777765432 2344689999999999999999865432 44433322 2
Q ss_pred --HHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCC--CCCCCHHHHHHHhcCCCCCccCCceeEEE
Q 018243 66 --NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ--DGTMDIDLIEAAIRDPKGEIVYPTTRLIC 141 (359)
Q Consensus 66 --~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~v~ 141 (359)
+...+..+. .+||.|++++|+|.... ...+..|.+++.++... ++..|.+.+.+.+.... +++++++
T Consensus 108 ~~l~~~~~~~~-~pgd~Vlv~~P~y~~y~---~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 178 (397)
T d3tata_ 108 LKVGADFLKRY-FPESGVWVSDPTWENHV---AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLP-----ARSIVLL 178 (397)
T ss_dssp HHHHHHHHHHH-CSSCCCEECSSCCTTHH---HHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCC-----SSCCCEE
T ss_pred HHHHHHHhhhc-CCCCcceecccCccccH---HHHHHcCCEEEEEecchhhccccchHHHHHHhhhcc-----cccEEEE
Confidence 223333344 69999999999977644 34788899999997653 35568888888776431 4556666
Q ss_pred EeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcC-chhH-hhhc-CccEEE-EeccccCCCcee--e
Q 018243 142 LENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVR-RLVQ-AADSAS-VCLSKGLGAPVG--S 215 (359)
Q Consensus 142 i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~-~~~~-~~d~~~-~s~~K~~g~~~g--g 215 (359)
+ ++++||||.+++.+++++|.++|++|+++||+||+|....+.... .+.. .... ...+++ .|+||.++.++. |
T Consensus 179 ~-~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG 257 (397)
T d3tata_ 179 H-PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVG 257 (397)
T ss_dssp C-SSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCB
T ss_pred e-cCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCcccc
Confidence 6 778889999999999999999999999999999997443321111 1111 1111 223444 499999987554 7
Q ss_pred EEecCHHHHHHHHHH-------HHhhCCCcchhHHHHHHHHHHH---------HHhHHHHhhhHHHHHHHHHHHHhcC-C
Q 018243 216 VIVGSKEFIKKARRL-------RKTLGGGMRQVGVLCAAALVAL---------QENVLVMLDGDHKKAKLLAEGLNQL-K 278 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~~-~ 278 (359)
|++.+....+..... ......+. +...+.++...+ .+..+..++++.++++.+.+.|... +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 335 (397)
T d3tata_ 258 GLSVMCEDAEAAGRVLGQLKATVRRNYSSP--PNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMP 335 (397)
T ss_dssp CCEEECSSTTHHHHHHHHHHHHTTTTTSSC--CSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred ccccchhHHHHHHHHHHHHHHHhhcccccc--cHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 776644333322211 11111222 222222222222 2223334555667777888888775 2
Q ss_pred C--ceEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 279 G--LRVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 279 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
. +.+. ++..|.|+|+.++. +++++| .++||.+.|++ ||+++ +++++++++++++|++++
T Consensus 336 ~~~~~~~-~~~~G~F~~~~ls~-------e~~~~L~~e~~V~l~~g~----Ri~~a-~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 336 ERNFDYL-LNQRGMFSYTGLSA-------AQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp TSCTTHH-HHCCSSBCCCCCCH-------HHHHHHTTTTCEECCSSS----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred CCceEEE-cCCCceEEecCcCH-------HHHHHHHHhCCEEeCCCC----EEEec-cCCHHHHHHHHHHHHHhC
Confidence 2 3332 34578888877654 456777 78899999986 89987 688999999999998764
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-26 Score=204.83 Aligned_cols=339 Identities=13% Similarity=0.024 Sum_probs=234.5
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCC-ccCCChHHHHHHH----HHHHHhCCCC-------eEEcCCchHHHHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDD-VLMHDPTAFRLET----EMAKVMGKEA-------GLFVPSGTMGNLISVLV 72 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~----~la~~~~~~~-------~~~~~~gt~a~~~~l~~ 72 (359)
.++|++-..+.+.|++.+.|.+...... .+...|...++|. .+++++|.+. +.++++||+|++.++.+
T Consensus 55 ~~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~a 134 (450)
T d1pmma_ 55 RQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMA 134 (450)
T ss_dssp GGBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHH
Confidence 3577777667777888899888654322 2334566655555 5778888752 48999999999999988
Q ss_pred hhhh-----------cCCeEEecCCCcceeeccccccccCCccceeeecCC-CCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 73 HCET-----------RGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQ-DGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 73 ~~~~-----------~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
+..+ ....++++...|++..+ + ++..|++++.++.++ ++.+|++.|++.++ +++.+|
T Consensus 135 ar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~K-a--a~~~gi~~~~v~~~~~~~~~d~~~L~~~i~--------~~t~~V 203 (450)
T d1pmma_ 135 MKWRWRKRMEAAGKPTDKPNLVCGPVQICWHK-F--ARYWDVELREIPMRPGQLFMDPKRMIEACD--------ENTIGV 203 (450)
T ss_dssp HHHHHHHHHHHHTCCCSCCEEEESSCCHHHHH-H--HHHTTCEEEECCCBTTBCSCCHHHHHHHCC--------TTEEEE
T ss_pred HHHHHHHHhhhcCCCCCCceEEecccHHHHHH-H--HHHcCCCceEeeecCCCCcCcHHHHHHHhh--------hCceEE
Confidence 7531 12247788888988765 3 788899999887654 69999999999999 788888
Q ss_pred EEeccccCCCceecChhhHHHHHH---HHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCcee-
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGE---IAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAPVG- 214 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~---~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~~g- 214 (359)
+. +..+|.||.+-|.+.+.+|++ .|+++|++++||+|++.+..+.... ....-...+|.++++.||++++|.|
T Consensus 204 v~-t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~ 282 (450)
T d1pmma_ 204 VP-TFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGC 282 (450)
T ss_dssp EC-BBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC
T ss_pred Ee-eeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCe
Confidence 77 667779999888665555544 3677899999999975544432211 1111124789999999999988888
Q ss_pred eEEecC-HHHHHHHHHHH-Hh-------hCCCcchhHHHH---HHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCce
Q 018243 215 SVIVGS-KEFIKKARRLR-KT-------LGGGMRQVGVLC---AAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLR 281 (359)
Q Consensus 215 g~~~~~-~~~~~~~~~~~-~~-------~~~~~~~~~~~~---~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~ 281 (359)
|+++.+ +.......... .+ .+...+...... .+.+..+ ....++..++..+++++|.+.|++.++++
T Consensus 283 g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~e 362 (450)
T d1pmma_ 283 GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYE 362 (450)
T ss_dssp EEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred eEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 776664 44322211000 00 111111111112 2222222 34455577888899999999999998998
Q ss_pred EecC---CccceEEEEEeccc--hHHHHHHHHHHHHhcCceec----cC---CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 282 VDVD---AVETNIVYFEITED--SKLYAACLLKKLEEHGVLVM----PE---SSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 282 ~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~~----~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
+..+ ....+.+.|++.+. .+++..++.+.|+++|+.+. |. ....+|+.+....++++++.+++.|+++
T Consensus 363 l~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~ 442 (450)
T d1pmma_ 363 FICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS 442 (450)
T ss_dssp EEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 7643 23456788888642 23567789999999998762 22 3457999999899999999999999999
Q ss_pred HHHHHh
Q 018243 350 YAGVCE 355 (359)
Q Consensus 350 ~~~~~~ 355 (359)
++.+.+
T Consensus 443 v~~l~~ 448 (450)
T d1pmma_ 443 LKYLSD 448 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999876
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=7.4e-26 Score=191.11 Aligned_cols=318 Identities=19% Similarity=0.190 Sum_probs=232.1
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|.+++++.....+ ..+|+..+..+++| ++.+++|+.+.+ +-..||+.|+..++.+++ +|||+|+.
T Consensus 36 S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all-~pGD~im~ 114 (405)
T d1kl1a_ 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL-EHGDTVLG 114 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhc-CCCCEEEE
Confidence 37888888764432 22466677777776 446788999876 888999999999999998 59999998
Q ss_pred cCCCcceeeccccccccCC--ccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHH
Q 018243 84 GDNSHIHIYENGGISTIGG--VHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g--~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~ 160 (359)
.++.++.....+......| .+++.++.+ +++.+|.+++++.+++ .++++|++ ....+| ..+ +++
T Consensus 115 l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~-------~kPklIi~-G~S~y~--r~~---d~~ 181 (405)
T d1kl1a_ 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL-------HRPKLIVA-AASAYP--RII---DFA 181 (405)
T ss_dssp ECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-------HCCSEEEE-CCSSCC--SCC---CHH
T ss_pred eecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh-------hCcceEEe-cccccc--ccc---ChH
Confidence 8877666554332233323 344555555 5578999999999996 78999998 434333 344 489
Q ss_pred HHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcch
Q 018243 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240 (359)
Q Consensus 161 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
+++++|++.|+++++|.+|..|... .+.-..++ .++|+++.|.||+|.+|.||+++.++++.+++.......-.+...
T Consensus 182 ~~reIad~vga~l~~D~aH~~GLIa-~g~~~~P~-~~aDvvt~tThKtlrGPrgg~I~~~~~~~~~i~~avfPg~qggp~ 259 (405)
T d1kl1a_ 182 KFREIADEVGAYLMVDMAHIAGLVA-AGLHPNPV-PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPL 259 (405)
T ss_dssp HHHHHHHHHTCEEEEECTTTHHHHH-TTSSCCST-TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCSSCC
T ss_pred HHHHHHhhhCCEEecchhhHhhhhh-hhhcCChh-hhhhheeccccccccCCCCceEEecchhHHHHHhhhCcccccCcc
Confidence 9999999999999999999777664 34334445 479999999999999999999999998887765433221111111
Q ss_pred hHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCce
Q 018243 241 VGVLCAAA---LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVL 317 (359)
Q Consensus 241 ~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (359)
...+++.+ ..++....+...++..++++.|.+.|.+. |+.+.........+++.+.. .+.+..+..+.|++.||.
T Consensus 260 ~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~-~~~~g~~ae~~Le~agI~ 337 (405)
T d1kl1a_ 260 MHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP-QQLTGKTAEKVLDEVGIT 337 (405)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHHHTEE
T ss_pred hhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccc-cCCcHHHHHHHHHHcCeE
Confidence 22232222 22333333447788899999999999999 99997766778889999865 345777777888999998
Q ss_pred e----ccCC------CcEEEEEe----CCCCCHHHHHHHHHHHHHHHHH
Q 018243 318 V----MPES------STRVRIVV----HHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 318 ~----~~~~------~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
+ .|+. +.+|||.. +.+++++|+.++.+.|.++++.
T Consensus 338 ~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 338 VNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred EcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 7 3442 36799964 4568899999999999999854
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=7.9e-27 Score=202.79 Aligned_cols=316 Identities=17% Similarity=0.114 Sum_probs=204.3
Q ss_pred cccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC---eEEcCCchHHHHHHHHHhhhhcCCe
Q 018243 5 TVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA---GLFVPSGTMGNLISVLVHCETRGSE 80 (359)
Q Consensus 5 ~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~---~~~~~~gt~a~~~~l~~~~~~~g~~ 80 (359)
++|+......++. +...+++... +++.-...++++..++.++.+. ++++++|++|+..++.++. +++.
T Consensus 22 i~~~~gl~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~--~~~~ 93 (366)
T d2aeua1 22 LYDLSGLSGGFLIDEKDKALLNTY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK--PKKV 93 (366)
T ss_dssp CEECSSCCCCCCCCHHHHHHHTST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC--CSEE
T ss_pred HhhhccCCCCCCccHHHHHHHHHh------cCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC--CCCE
Confidence 4566543333333 5666665442 2333456788888888887653 4778889999999888765 5555
Q ss_pred E-Eec-CCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhh
Q 018243 81 V-ILG-DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEY 158 (359)
Q Consensus 81 v-l~~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~ 158 (359)
| +++ .|+|.+... + +++.|++++ +.+ |+++|++.++ +++++|++++++| |+ .++.++
T Consensus 94 vi~~~~~~~~~~~~~-~--~~l~g~~~v--~~~-----d~e~l~~~i~--------~~tk~i~~~~p~n-~~--~~~~~~ 152 (366)
T d2aeua1 94 IHYLPELPGHPSIER-S--CKIVNAKYF--ESD-----KVGEILNKID--------KDTLVIITGSTMD-LK--VIELEN 152 (366)
T ss_dssp EEECSSSSCCTHHHH-H--HHHTTCEEE--EES-----CHHHHHTTCC--------TTEEEEEECBCTT-SC--BCCHHH
T ss_pred EEEecCCCcchhHHH-H--HHhcCCeEE--CCC-----CHHHHHHhcC--------CCceEEEEEecCC-CC--cCCHHH
Confidence 5 444 588888665 4 777887654 444 8999999998 7999999966665 53 345678
Q ss_pred HHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCc
Q 018243 159 TDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGM 238 (359)
Q Consensus 159 l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
+++|+++|++||+++++|++|..+.+...+.+. ....++|++++|+||.++++.+||+++++++++.++......+.+.
T Consensus 153 l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~-~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~ 231 (366)
T d2aeua1 153 FKKVINTAKNKEAIVFVDDASGARVRLLFNQPP-ALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEA 231 (366)
T ss_dssp HHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC-HHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBC
T ss_pred HHHHHHHhccCcEEEEEecCccccccccccCCC-HhhcCceEEEecccccccccceeEEEecHHHHHHHHHHHhcccccC
Confidence 999999999999999999998655543232221 2234789999999999988777999999999999988877766655
Q ss_pred chhHHHHHHHHHHHHHhHHHHhhhHHH--------HHHHHHHHHhcCCCceE-ecCCccceEEEEEeccch---HHHHHH
Q 018243 239 RQVGVLCAAALVALQENVLVMLDGDHK--------KAKLLAEGLNQLKGLRV-DVDAVETNIVYFEITEDS---KLYAAC 306 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~l~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (359)
++..++++..+++...-.++++..+ ..+.+...+...++... ...+....+++....... ..+..+
T Consensus 232 --~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (366)
T d2aeua1 232 --QPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIE 309 (366)
T ss_dssp --CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHH
Confidence 4445555555554221112222222 22333333333444432 122234555665544321 124556
Q ss_pred HHHHH-HhcCceeccC-----CCcEEEEEeCCCCCHH-HHHHHHHHHHHHHHH
Q 018243 307 LLKKL-EEHGVLVMPE-----SSTRVRIVVHHQISAN-DVHYTLSCFQKIYAG 352 (359)
Q Consensus 307 ~~~~l-~~~gi~~~~~-----~~~~lRi~~~~~~~~~-~i~~~~~~l~~~~~~ 352 (359)
++.+| +++||.++|+ +...+||++....+++ +.+++++.+.+.++.
T Consensus 310 ~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~ 362 (366)
T d2aeua1 310 IGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 362 (366)
T ss_dssp HHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHHH
Confidence 77777 7889998654 5568999996333333 356677777666654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-25 Score=190.54 Aligned_cols=317 Identities=16% Similarity=0.171 Sum_probs=231.6
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-EEcCCchHHHHHHHHHhhhhcCCeEEe
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-LFVPSGTMGNLISVLVHCETRGSEVIL 83 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~~~g~~vl~ 83 (359)
+|.+++++.....+ ..+|+..+..+++| ++.+++|+.+.+ +...||+.|+..++.+++ +|||+|+.
T Consensus 39 S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All-~pGD~Il~ 117 (416)
T d1dfoa_ 39 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-EPGDTVLG 117 (416)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhc-CCCCeeee
Confidence 47888888764432 22466667776666 446788999876 778999999999999999 59999999
Q ss_pred cCCCcceeeccccccccCCc--cceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHH
Q 018243 84 GDNSHIHIYENGGISTIGGV--HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDS 161 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~ 161 (359)
.+..|...+..+......|. +.+.++.+.++.+|.+++++..++ .++++|++.. ..+ ...++ +++
T Consensus 118 l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~-------~kPklIi~G~-S~y--~r~~d---~~~ 184 (416)
T d1dfoa_ 118 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKE-------HKPKMIIGGF-SAY--SGVVD---WAK 184 (416)
T ss_dssp ECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHH-------HCCSEEEEEC-SSC--CSCCC---HHH
T ss_pred ccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHH-------hccceEEecc-ccc--ccccC---HHH
Confidence 88888887664433333333 445556667788999999999986 7899999843 332 24555 899
Q ss_pred HHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecC---HHHHHHHHHHHH-hhCCC
Q 018243 162 VGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS---KEFIKKARRLRK-TLGGG 237 (359)
Q Consensus 162 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~---~~~~~~~~~~~~-~~~~~ 237 (359)
++++|++.|+++++|.+|..|... .+.-..++. .+|+++.|+||+|.+|.||+++.+ +++.+++..... ..-++
T Consensus 185 ~reiad~vga~l~~D~aH~~GLIa-~g~~~sP~~-~aDvvt~tThKtlrGPrggiI~~~~~~~~~~~~i~~avfPg~qgg 262 (416)
T d1dfoa_ 185 MREIADSIGAYLFVDMAHVAGLVA-AGVYPNPVP-HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGG 262 (416)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHH-HTSSCCCTT-TSSEEEEESSSTTCCCSCEEEEESSCCHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHhcCceEEcchhhhhccee-ccccCCccc-ccceeeeehhhcccCCCceEEEeccchHhHHHHHHhhhCcccccC
Confidence 999999999999999999877664 333333443 679999999999999999988875 566666543222 11122
Q ss_pred cchhHHHHHHHH---HHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhc
Q 018243 238 MRQVGVLCAAAL---VALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 238 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
. ....+++.+. .++........++..++++.|.+.|.+. |+.+........++++.+.+ .+.++.++.+.|.+.
T Consensus 263 p-~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~-~~~~G~~a~~~Le~~ 339 (416)
T d1dfoa_ 263 P-LMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVD-KNLTGKEADAALGRA 339 (416)
T ss_dssp C-CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHHT
T ss_pred c-cHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecc-cCCCHHHHHHHHHHc
Confidence 2 1223332222 1222233447788899999999999999 99997766778888999875 456788888899999
Q ss_pred Ccee----ccC------CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHHH
Q 018243 315 GVLV----MPE------SSTRVRIVV----HHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 315 gi~~----~~~------~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
||.+ .|+ .+.+|||.. +.++.++|++++.+.|.++++.
T Consensus 340 gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 340 NITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp TEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 9987 444 345799974 4567899999999999998864
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.95 E-value=3e-26 Score=206.12 Aligned_cols=340 Identities=17% Similarity=0.214 Sum_probs=222.6
Q ss_pred ccccccCCCCCChH-HHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeE-
Q 018243 4 RTVDLRSDTVTKPT-EAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEV- 81 (359)
Q Consensus 4 ~~id~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~v- 81 (359)
.+|||.|++.+.+. +....++.. ++..|+.++...+|++.+++++|.+.+++++||++|+..++..++. +++++
T Consensus 43 ~~id~~sd~~t~~~~~~~~a~~~~---gd~~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~-~g~~~~ 118 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWAAMIT---GDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLK-YKQKEG 118 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHHHHHT---CCCCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHH-HHHHTT
T ss_pred eeeecccccchhhhhHHHHHHHhh---hhhhhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHH-HHHhcC
Confidence 36899999888775 666666654 6778999999999999999999999999999999999999999974 44432
Q ss_pred -----EecCCCcceeeccccccccCCccceeee----------cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 82 -----ILGDNSHIHIYENGGISTIGGVHPRTVK----------NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 82 -----l~~~~~~~~~~~~~~~~~~~g~~~~~v~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
++....|+.... +.....|..++.+. .+.++.+|+++++++++... ...+.++++++++
T Consensus 119 ~~~~~~i~~~~h~~t~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~~~~~~~~~~~ 192 (465)
T d1ax4a_ 119 KAKNPVFISNFHFDTTA--AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG----ADNIVAIVSTVTC 192 (465)
T ss_dssp CCSSCEEEESSCCHHHH--HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC----GGGEEEEEEESSB
T ss_pred CCCCeEEeccchhhhhH--HHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc----cccccceeecccc
Confidence 222333443332 23445555554331 23457899999999997421 1356677776666
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhh--------cCchhH----hhhcCccEEEEeccccCCCcee
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVA--------LGVPVR----RLVQAADSASVCLSKGLGAPVG 214 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~--------~~~~~~----~~~~~~d~~~~s~~K~~g~~~g 214 (359)
+..+|.+++.+++++|+++|++||+++|+|++|..+.... .+.+.. .+....|++++|.+|.++++.+
T Consensus 193 ~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~ 272 (465)
T d1ax4a_ 193 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272 (465)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC
T ss_pred ccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc
Confidence 6555678899999999999999999999999986544321 111221 2234578999999999988888
Q ss_pred eEEecCHH--HHHHHHHHHH-hhC-CCcch-hHHHHHHHHHHHHH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCcc
Q 018243 215 SVIVGSKE--FIKKARRLRK-TLG-GGMRQ-VGVLCAAALVALQE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVE 288 (359)
Q Consensus 215 g~~~~~~~--~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~ 288 (359)
|+++.++. .......... ..+ .+... ......+....+.. ..++..++..++.++|.+.|++. ++.+.. +..
T Consensus 273 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~-~~~ 350 (465)
T d1ax4a_ 273 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQY-PTG 350 (465)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCS-SCC
T ss_pred eeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhh-cCcccc-CCC
Confidence 88877543 3333222221 111 11111 11122222222222 22335566777889999999998 877643 445
Q ss_pred ceEEEEEecc------chHHHHHHHHH-HHHhcCceecc-----------------CCCcEEEEEeC-CCCCHHHHHHHH
Q 018243 289 TNIVYFEITE------DSKLYAACLLK-KLEEHGVLVMP-----------------ESSTRVRIVVH-HQISANDVHYTL 343 (359)
Q Consensus 289 ~~~~~~~~~~------~~~~~~~~~~~-~l~~~gi~~~~-----------------~~~~~lRi~~~-~~~~~~~i~~~~ 343 (359)
+..+++.... ........+.. .+.+.||.... ...+.+|++++ ...|++|+|+++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv 430 (465)
T d1ax4a_ 351 GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIA 430 (465)
T ss_dssp SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHH
T ss_pred cceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHH
Confidence 6666554321 01123333444 44788887521 12347999853 456999999999
Q ss_pred HHHHHHHHHHHh
Q 018243 344 SCFQKIYAGVCE 355 (359)
Q Consensus 344 ~~l~~~~~~~~~ 355 (359)
++|++++++..+
T Consensus 431 ~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 431 DALIGLKEKFAT 442 (465)
T ss_dssp HHHHTTHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1.7e-27 Score=209.93 Aligned_cols=324 Identities=15% Similarity=0.094 Sum_probs=207.1
Q ss_pred cccccccCCCC----C--ChHHHHHHHHHcCCCC--CCccCCChHHHHHHHHHHHHhCCC-------CeEEcCCchHHHH
Q 018243 3 TRTVDLRSDTV----T--KPTEAMRAAMASAEVD--DDVLMHDPTAFRLETEMAKVMGKE-------AGLFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~----~--~~~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~-------~~~~~~~gt~a~~ 67 (359)
++.|||.-+.+ . .+.|.|.+++.+.... ...|++.++..+||+++++++... ..+++++|+.+..
T Consensus 26 ~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (394)
T d2ay1a_ 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALR 105 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHH
T ss_pred CCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHH
Confidence 35688887632 1 2237888887664332 346888999999999999986322 1266666665544
Q ss_pred HH--HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecC--CCCCCCHHHHHHHhcCCCCCccCCceeEEEEe
Q 018243 68 IS--VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNN--QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143 (359)
Q Consensus 68 ~~--l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~ 143 (359)
.+ +.... .+|+.|++++|+|.. +. .+++..|.+++.++.. .++..+.+.+++...... +++. +++.
T Consensus 106 l~~~~~~~~-~~gd~V~~p~p~~~~-y~--~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-i~~~ 175 (394)
T d2ay1a_ 106 QALELARMA-NPDLRVFVSDPTWPN-HV--SIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAK-----KGDM-VLLH 175 (394)
T ss_dssp HHHHHHHHH-CTTCCEEEEESCCHH-HH--HHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCC-----TTCE-EEEE
T ss_pred HHHHHhhhc-CCceEEEEecccccc-hH--HHHHHcCCEEEEecccchhcccccchhHHHHHhhcc-----cCcE-EEEe
Confidence 33 33344 689999999999666 44 4588889899888653 344556777776665421 3444 4444
Q ss_pred ccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc-hhHhh--hcCccE-EEEeccccCCCcee--eEE
Q 018243 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV-PVRRL--VQAADS-ASVCLSKGLGAPVG--SVI 217 (359)
Q Consensus 144 ~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-~~~~~--~~~~d~-~~~s~~K~~g~~~g--g~~ 217 (359)
+++|||||.+++.+++++|+++|++|+++||+|++|....+..... +.... ...... +..|++|.++.++. |++
T Consensus 176 ~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~ 255 (394)
T d2ay1a_ 176 GCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCL 255 (394)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccch
Confidence 7888899999999999999999999999999999974433221111 11111 123334 44599999986543 777
Q ss_pred ecCHHHHHHHHHHH-------HhhCCCcchhHHHHHHHHH-------HHHHhHHHHhhhHHHHHHHHHHHHhcCC---Cc
Q 018243 218 VGSKEFIKKARRLR-------KTLGGGMRQVGVLCAAALV-------ALQENVLVMLDGDHKKAKLLAEGLNQLK---GL 280 (359)
Q Consensus 218 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~l~~~l~~~~---g~ 280 (359)
..+....+...... .....+........+.... .+....+..++++.++++.|.+.|+++. .+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 335 (394)
T d2ay1a_ 256 LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRF 335 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred hhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 66544443332211 1112222111111111111 1123344466677788899999998751 13
Q ss_pred eEecCCccceEEEEEeccchHHHHHHHHHHH-HhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Q 018243 281 RVDVDAVETNIVYFEITEDSKLYAACLLKKL-EEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKI 349 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 349 (359)
.+. .+..|.|+|+.++. +++++| .++||+++|++ ||+++ ++++++++++.++|.++
T Consensus 336 ~~~-~~~~G~F~~~~ls~-------~~~~~L~~~~~V~~~~g~----Ri~~a-~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 336 GFV-AEHRGMFSRLGATP-------EQVKRIKEEFGIYMVGDS----RINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp THH-HHCCSSEEECCCCH-------HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred eeE-CCCceeEEecCcCH-------HHHHHHHHhCCEEecCCC----EEEec-CCCHHHHHHHHHHHHHh
Confidence 332 34578888876653 456677 78999999875 99986 78999999999998764
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=4.2e-25 Score=188.91 Aligned_cols=287 Identities=15% Similarity=0.129 Sum_probs=218.4
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCC
Q 018243 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 37 ~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 115 (359)
.|....||+.++++-|.+.+++++||..|+..++.+++ ++|++|++++..|+..+... ......|.++..++..
T Consensus 49 nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~---- 123 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG---- 123 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT----
T ss_pred CHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhhcccccccccccCC----
Confidence 78899999999999999999999999999999999888 59999999999887765311 2234456666666544
Q ss_pred CCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhh
Q 018243 116 MDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLV 195 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 195 (359)
|.+++++.++ +++++||+|++.| |+..+.+ +++|+++|+++|+++|||++ |. .+....++.
T Consensus 124 -d~~~~~~~~~--------~~t~~v~~EspsN-P~l~v~D---i~~i~~ia~~~g~~~vVDNT--~a----tP~~~~Pl~ 184 (384)
T d1cs1a_ 124 -DEQALRAALA--------EKPKLVLVESPSN-PLLRVVD---IAKICHLAREVGAVSVVDNT--FL----SPALQNPLA 184 (384)
T ss_dssp -CHHHHHHHHH--------TCCSEEEEECSCT-TTCCCCC---HHHHHHHHHHTTCEEEEECT--TT----CTTTCCGGG
T ss_pred -CHHHHHhhcc--------ccccEEEEecccc-ccceecc---HHHHhhhhhhcCcEEEEecc--cc----Ccccccccc
Confidence 8899999999 8999999998877 9988877 89999999999999999998 31 133344555
Q ss_pred cCccEEEEeccccCCCc---eeeEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHH
Q 018243 196 QAADSASVCLSKGLGAP---VGSVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLA 271 (359)
Q Consensus 196 ~~~d~~~~s~~K~~g~~---~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 271 (359)
.++|+++.|.+|++++- .+|+++. ++.+.+.++......|... ++..+.....+++...- ++++..+++..+.
T Consensus 185 ~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~--~p~~a~ll~rgL~TL~l-Rm~~~~~nA~~lA 261 (384)
T d1cs1a_ 185 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTG--GAFDSYLLLRGLRTLVP-RMELAQRNAQAIV 261 (384)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHHH
T ss_pred cCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhcc--ccccHHHHhhccchhHH-HHHHHHHHHHHHH
Confidence 68999999999999753 4465555 6777777777777888776 56677777888887655 8999999999999
Q ss_pred HHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC--------------
Q 018243 272 EGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-------------- 321 (359)
Q Consensus 272 ~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-------------- 321 (359)
+.|++.|.++ +..|. ..+..+.+.+... ......|.+.|+-..+.+.-|
T Consensus 262 ~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~-~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th 340 (384)
T d1cs1a_ 262 KYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH 340 (384)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT
T ss_pred HhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecch-HHHHHHHHHhCCcceeccccCCccceecccccccc
Confidence 9999988774 33331 2366777777652 234566776664322211111
Q ss_pred -------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 322 -------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 322 -------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.++.||+++. -|+++.+++.|+++++...+
T Consensus 341 ~~~~~e~r~~~Gi~~~lvRlSvG----lEd~eDLi~Dl~~AL~aa~~ 383 (384)
T d1cs1a_ 341 AGMAPEARAAAGISETLLRISTG----IEDGEDLIADLENGFRAANK 383 (384)
T ss_dssp TTSCHHHHHHHTCCTTEEEEECC----SSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHhcCCCcCeEEEEec----cCCHHHHHHHHHHHHHHhcC
Confidence 3456999985 37888889999888887643
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.95 E-value=3.1e-26 Score=200.22 Aligned_cols=295 Identities=15% Similarity=0.093 Sum_probs=213.6
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCC
Q 018243 36 HDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGT 115 (359)
Q Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 115 (359)
.++....+|+.+++++|.+++++++|||.|+..++.++..++||+|++|..+|..... .....|++++.++.+++..
T Consensus 19 ~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~---~~~~~g~~pv~~Di~~~~~ 95 (374)
T d1o69a_ 19 LGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYN 95 (374)
T ss_dssp TTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSS
T ss_pred CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHH---HHhhccceeEecccccccc
Confidence 4799999999999999999999999999999999999966799999999999887765 2667788999998875543
Q ss_pred CC-HHH--HHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhH
Q 018243 116 MD-IDL--IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR 192 (359)
Q Consensus 116 ~~-~~~--l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 192 (359)
.. .+. +..... +++++|++.+.. |...+ ++++.++|+++|++||+|.||++|... .+....
T Consensus 96 ~~~~~~~~~~~~~~--------~~~~aii~~~~~----G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~-~~~~~G 159 (374)
T d1o69a_ 96 IDVDLLKLAIKECE--------KKPKALILTHLY----GNAAK---MDEIVEICKENDIVLIEDAAEALGSFY-KNKALG 159 (374)
T ss_dssp BCHHHHHHHHHHCS--------SCCCEEEEECGG----GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEE-TTEETT
T ss_pred cccccccccchhcc--------cccccccccccc----cchhh---hHHHHHHhhccCcchhhhhhhhhcceE-CCeecC
Confidence 33 332 223333 678898886655 45444 899999999999999999999987653 444433
Q ss_pred hhhcCccEEEEeccccCCCceeeEEe-cCHHHHHHHHHHHHh------------hCCCcchhHHHHHHHHHHHHHhHHHH
Q 018243 193 RLVQAADSASVCLSKGLGAPVGSVIV-GSKEFIKKARRLRKT------------LGGGMRQVGVLCAAALVALQENVLVM 259 (359)
Q Consensus 193 ~~~~~~d~~~~s~~K~~g~~~gg~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 259 (359)
.+. ++.++++..+|.++.+.||+++ .++++.++++.++.. .|.+.+++...++.+...++...+ .
T Consensus 160 ~~g-d~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~-~ 237 (374)
T d1o69a_ 160 TFG-EFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ-R 237 (374)
T ss_dssp SSS-SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH-H
T ss_pred CCC-ceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhh-h
Confidence 331 3334555666999766665554 578888888766543 356677888999999998887666 7
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEecCCcc----ceEEEEEecc-----------------chHHHHHHHHHHHHhcCcee
Q 018243 260 LDGDHKKAKLLAEGLNQLKGLRVDVDAVE----TNIVYFEITE-----------------DSKLYAACLLKKLEEHGVLV 318 (359)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~g~~~~~~~~~----~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~gi~~ 318 (359)
.++..++++++.+.|.+.+.+........ ..++.+.... ......+.+.+.|+++||.+
T Consensus 238 i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~ 317 (374)
T d1o69a_ 238 VLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIET 317 (374)
T ss_dssp HHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCC
T ss_pred cchhHHHHHHHHhhccccccccccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCCE
Confidence 77788888999999987522111111101 1111111110 01125778999999999987
Q ss_pred ccC------------------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 319 MPE------------------------SSTRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 319 ~~~------------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+. ....+.+++++.++++|++++++.|.++++
T Consensus 318 r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 318 RPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp BCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence 432 123488999999999999999999998874
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.1e-25 Score=190.69 Aligned_cols=312 Identities=16% Similarity=0.137 Sum_probs=227.8
Q ss_pred CCCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 11 DTVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 11 ~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
.++.+++ ++..++......+...|+. .|....+|+.++++-|.+.+++++||..|+..++.+++ ++||+|+++...
T Consensus 28 st~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~ 106 (391)
T d1cl1a_ 28 SSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTA 106 (391)
T ss_dssp SCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTS
T ss_pred CceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhccc-CCCCeEEEeccc
Confidence 3445544 5666666654434445664 78899999999999999999999999999999999998 599999999999
Q ss_pred cceeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 88 HIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 88 ~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
|.+++... ......|+++..++.. |.+.+++.++ +++++|+++++.| |+..+.+ +++++++|
T Consensus 107 Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~--------~~t~~i~~EtpsN-P~l~v~D---i~~i~~~a 169 (391)
T d1cl1a_ 107 YEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ--------PNTKIVFLESPGS-ITMEVHD---VPAIVAAV 169 (391)
T ss_dssp CHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHH
T ss_pred ccchhhhhhhcccccccccccccCc-----cccccccccc--------cccceeeecccCc-ccccccc---cHHHHHHH
Confidence 98776411 2244578777777654 7788888888 8999999988776 9988877 89999999
Q ss_pred HHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHHHHhhCCCcchh
Q 018243 167 KKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRLRKTLGGGMRQV 241 (359)
Q Consensus 167 ~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (359)
+++ |+++|||++ +.. +....++..++|+++.|.+|++++- .||+++.+++..+.+.......|... +
T Consensus 170 ~~~~~g~~~vVDnT--~at----P~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~--~ 241 (391)
T d1cl1a_ 170 RSVVPDAIIMIDNT--WAA----GVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV--D 241 (391)
T ss_dssp HHHCTTCEEEEECT--TTT----TTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC--C
T ss_pred HhccCCcEEEEecc--ccc----hhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccC--C
Confidence 775 999999998 322 2334445558999999999999763 45888888888888887777778776 5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceE-ecCC---------------ccceEEEEEeccc-hHHHH
Q 018243 242 GVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRV-DVDA---------------VETNIVYFEITED-SKLYA 304 (359)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~---------------~~~~~~~~~~~~~-~~~~~ 304 (359)
+..++....+++...- ++++..+++..+.+.|++.|.+.. ..|. ..+..+.|.+... .....
T Consensus 242 p~~a~ll~rgl~TL~l-R~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~ 320 (391)
T d1cl1a_ 242 ADTAYITSRGLRTLGV-RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL 320 (391)
T ss_dssp HHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred chhhhhhhccchhHHH-HHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHH
Confidence 5667777778877666 889999999999999999987763 3321 2244566666642 11233
Q ss_pred HHHHHHHH--hcCcee-------c-c---------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLE--EHGVLV-------M-P---------------ESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 305 ~~~~~~l~--~~gi~~-------~-~---------------~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..|.+.|+ ..+..+ . | -.++.||+++. + |+++++++.|+++++++
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVG--l--Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIG--L--EDVDDLIADLDAGFARI 390 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECC--S--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEec--c--CCHHHHHHHHHHHHHhh
Confidence 44555442 112211 0 0 02346999994 4 68888888888888764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.95 E-value=8.2e-26 Score=194.17 Aligned_cols=332 Identities=18% Similarity=0.212 Sum_probs=219.9
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCC-CCccCCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHHHhhhhcCCeEE
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVLVHCETRGSEVI 82 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~~~~~~~g~~vl 82 (359)
++|.|+|..+++|++++||.++... ...|+..+..+++|+.+++++|.+. .++++|||+|+..++..+. .++++++
T Consensus 2 ~~f~nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~-~~~~~~~ 80 (340)
T d1svva_ 2 YSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL-RPWEAVI 80 (340)
T ss_dssp EECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-CTTEEEE
T ss_pred CCcccCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh-hhccccc
Confidence 6899999999999999999986654 3457778889999999999999975 4778899999999999888 4888999
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+..+.|.+.+... .....+......... ....+.+.......... ......+.++++ +..+ .+|...+.+++..+
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 155 (340)
T d1svva_ 81 ATQLGHISTHETG-AIEATGHKVVTAPCP-DGKLRVADIESALHENR-SEHMVIPKLVYI-SNTT-EVGTQYTKQELEDI 155 (340)
T ss_dssp EETTSHHHHSSTT-HHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSC-STTSCEEEEEEE-ESSC-TTSCCCCHHHHHHH
T ss_pred cccccceeeeecc-cccccceeeeecccc-cccccchhHHHHhhhhh-cccCCcceeeee-cccc-cccccccHHHhhhh
Confidence 9998887766522 122223233333222 22234443333333211 111123334444 4444 46777788899999
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCc--hhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcch
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGV--PVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQ 240 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
.+.|+++|.++++|+++..+....... .........+....+..|..+.+.+++..................+.+...
T Consensus 156 ~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (340)
T d1svva_ 156 SASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAK 235 (340)
T ss_dssp HHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCCTT
T ss_pred hcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcccccCccch
Confidence 999999999999999975544432221 112222234566667777776655565665555544444344444444433
Q ss_pred hHHHHHHHHHHHHH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec
Q 018243 241 VGVLCAAALVALQE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM 319 (359)
Q Consensus 241 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 319 (359)
.....+++...++. ......++...++.++.+.|++. |+++.. |..++++++.++. ...+.+.+++...|+.+.
T Consensus 236 ~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~-p~~~~~v~~~~~~---~~~~~l~~~~~~~~~~~~ 310 (340)
T d1svva_ 236 GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRLAW-PSASNQLFPILEN---TMIAELNNDFDMYTVEPL 310 (340)
T ss_dssp THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-CCSSSEECBEEEH---HHHHHHTTTEECEEEEEE
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCeeec-CCCceEEEEeCCH---HHHHHHHHhhhhhccccc
Confidence 33333333333332 22235566777888999999988 998754 4578899888875 244445444444566667
Q ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Q 018243 320 PESSTRVRIVVHHQISANDVHYTLSCFQK 348 (359)
Q Consensus 320 ~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 348 (359)
+.+.+.+|+++++.+|++|||+++++|++
T Consensus 311 ~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 311 KDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 77888999999999999999999999986
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=3.2e-25 Score=197.40 Aligned_cols=313 Identities=15% Similarity=0.139 Sum_probs=213.9
Q ss_pred CCccCCChHHHHHHHH----HHHHhCCCC-----------eEEcCCchHHHHHHHHHhhhhc------------------
Q 018243 31 DDVLMHDPTAFRLETE----MAKVMGKEA-----------GLFVPSGTMGNLISVLVHCETR------------------ 77 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~----la~~~~~~~-----------~~~~~~gt~a~~~~l~~~~~~~------------------ 77 (359)
...+..+|....+|.. +++++|.+. ++++++||+|++.++..++.+.
T Consensus 102 ~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~ 181 (476)
T d1js3a_ 102 GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181 (476)
T ss_dssp CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccC
Confidence 3345567777666665 566677752 3899999999999998876311
Q ss_pred CCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChh
Q 018243 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVE 157 (359)
Q Consensus 78 g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~ 157 (359)
.-.|++++.+|++..+ + +...|..++.++.++++.+|++.|++.|++.... ..+-++++.+..++.||.+-|
T Consensus 182 ~~vv~~s~~~H~Si~k-a--~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~---g~~p~~VvataGtt~~G~iDp-- 253 (476)
T d1js3a_ 182 KLVAYASDQAHSSVER-A--GLIGGVKLKAIPSDGKFAMRASALQEALERDKAA---GLIPFFVVATLGTTSCCSFDN-- 253 (476)
T ss_dssp HEEEEEETTCCHHHHH-H--HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT---TCEEEEEEEEBSCTTTCCBCC--
T ss_pred ceEEEecccccHHHHH-H--HHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhc---CCCcEEEeecCCCccceeecc--
Confidence 1147899999999876 3 6778888888999999999999999999842111 123344444777778999755
Q ss_pred hHHHHHHHHHHcCcEEEEecccccchhhhcC-chhHhhhcCccEEEEeccccCCCcee-eEEec-CHHHHHHH-------
Q 018243 158 YTDSVGEIAKKHGLKLHIDGARIFNAAVALG-VPVRRLVQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKA------- 227 (359)
Q Consensus 158 ~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~------- 227 (359)
+++|.++|++||+|++||+|++........ .....-...+|.+++++||+++.|.+ |+++. ++......
T Consensus 254 -l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~ 332 (476)
T d1js3a_ 254 -LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332 (476)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----
T ss_pred -HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhh
Confidence 899999999999999999996443333211 11111234789999999999999877 55554 44433221
Q ss_pred -HHHHHhh---------C--CCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEE
Q 018243 228 -RRLRKTL---------G--GGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYF 294 (359)
Q Consensus 228 -~~~~~~~---------~--~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 294 (359)
....... + .+-+...+-.++.+..+ ....++.+++..++++++.+.|++.|++++..+ +..++++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~-p~l~iV~F 411 (476)
T d1js3a_ 333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE-VTLGLVCF 411 (476)
T ss_dssp -------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC-CCSSEEEE
T ss_pred hccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECC-CceEEEEE
Confidence 1111000 0 01111122223333333 344555888888999999999999999998654 57888999
Q ss_pred EeccchHHHHHHHHHHHHhcCc-eec---cCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGV-LVM---PESSTRVRIVVH-HQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi-~~~---~~~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++...+. ...++.++|.+.|- .+. -.+..++|+++. +.+++++++.+++.|+++.+++.
T Consensus 412 r~~~~d~-~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 412 RLKGSDG-LNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp EESSCHH-HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EccCChH-HHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9876332 33678888877763 332 235668999864 67889999999999999988763
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.95 E-value=8.9e-26 Score=202.80 Aligned_cols=317 Identities=13% Similarity=0.080 Sum_probs=196.3
Q ss_pred CCccCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccccccccCCcccee--e
Q 018243 31 DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRT--V 108 (359)
Q Consensus 31 ~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~--v 108 (359)
++.+.+...+.++|+.+|++||.+.+++++|||+++..++..++.++||+|++++.+|.+.+..+ ..+.+..++. .
T Consensus 59 d~l~~~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~--~~l~~~~~~~~~~ 136 (462)
T d1c4ka2 59 GDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA--LAMAGGRPVYLQT 136 (462)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH--TTTTCCEEEEECE
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHH--HHHhcCCceeeec
Confidence 33455667789999999999999999999999887665544444479999999999999988733 3333433333 3
Q ss_pred ecCCCC--------CCCHHHHHHHhcCC-CCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEeccc
Q 018243 109 KNNQDG--------TMDIDLIEAAIRDP-KGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGAR 179 (359)
Q Consensus 109 ~~~~~~--------~~~~~~l~~~l~~~-~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~ 179 (359)
+.+..+ .++.+.+++.+... .+.....++..+++.+.++ ..|.+.+ +++|+++|+++|+++++|+||
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~-~~G~~~d---l~~I~~ia~~~g~~l~vD~A~ 212 (462)
T d1c4ka2 137 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYN---AHEVVKRIGHLCDYIEFDSAW 212 (462)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEEC---HHHHHHHHGGGBSEEEEECTT
T ss_pred ccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeee-eccchhh---HHHHHHHHHHcCCEEEEechh
Confidence 334333 23444444333211 0000013455555545555 6799887 899999999999999999999
Q ss_pred ccchhhhcCchhHhh--------hcCccEEEEeccccCCCceeeEEe-cCHHHH---------HHHHHHHHhhCCCcchh
Q 018243 180 IFNAAVALGVPVRRL--------VQAADSASVCLSKGLGAPVGSVIV-GSKEFI---------KKARRLRKTLGGGMRQV 241 (359)
Q Consensus 180 ~~~~~~~~~~~~~~~--------~~~~d~~~~s~~K~~g~~~gg~~~-~~~~~~---------~~~~~~~~~~~~~~~~~ 241 (359)
+.+............ ..++|++++|+||++|.+.+|.++ .+...+ +.++........ ++++
T Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~sp~ 291 (462)
T d1c4ka2 213 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS-TSPF 291 (462)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSC-SSCC
T ss_pred hccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhccc-CCch
Confidence 776654222111111 124589999999999987775444 333221 122222222211 2222
Q ss_pred HHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-------------------------------
Q 018243 242 GVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA------------------------------- 286 (359)
Q Consensus 242 ~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~------------------------------- 286 (359)
....+....+. ....++..++..++++++++.++++++......+
T Consensus 292 ~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (462)
T d1c4ka2 292 YPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKW 371 (462)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchh
Confidence 22222222222 2222335667778888999988876433211000
Q ss_pred -----ccce-------EEEEEecc---------chHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 287 -----VETN-------IVYFEITE---------DSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 287 -----~~~~-------~~~~~~~~---------~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
.... -+.+..+. ..+..+..+.+.|+++||.+...+...+|++++..+|++++++++++
T Consensus 372 ~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~a 451 (462)
T d1c4ka2 372 HAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQ 451 (462)
T ss_dssp TCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHH
T ss_pred ccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHH
Confidence 0000 02222211 01235678889999999988777888999999999999999999999
Q ss_pred HHHHHHHHH
Q 018243 346 FQKIYAGVC 354 (359)
Q Consensus 346 l~~~~~~~~ 354 (359)
|+++.+.+.
T Consensus 452 L~ei~r~~~ 460 (462)
T d1c4ka2 452 LLQLQRLIE 460 (462)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887764
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=3.3e-25 Score=189.57 Aligned_cols=287 Identities=21% Similarity=0.230 Sum_probs=215.2
Q ss_pred ccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeee
Q 018243 33 VLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVK 109 (359)
Q Consensus 33 ~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~ 109 (359)
.|+. .|....||+.++.+-|.+.+++++||..|+ .++..++ ++||+|+++...|.+++... ......|+++..++
T Consensus 42 ~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAi-sall~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d 119 (380)
T d1ibja_ 42 DYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAAL-SAVTHLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 119 (380)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHH-HHHHTTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred eeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHH-HHHHHhh-CCCCEEEEEecccccccchhhhhhccccccccccC
Confidence 4553 788999999999999999999999998776 5677766 69999999999988775411 12344677777776
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCc
Q 018243 110 NNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 189 (359)
.. +.+++++.++ +++++||++++.| |+..+.+ +++|+++|+++|+++|||++. . .+.
T Consensus 120 ~~-----~~~~~~~ai~--------~~t~li~~EtpsN-P~l~v~D---i~~i~~iA~~~g~~~vVDnT~--a----tP~ 176 (380)
T d1ibja_ 120 TT-----KLDEVAAAIG--------PQTKLVWLESPTN-PRQQISD---IRKISEMAHAQGALVLVDNSI--M----SPV 176 (380)
T ss_dssp TT-----SHHHHHHHCC--------SSEEEEEECSSCT-TTCCCCC---HHHHHHHHHTTTCEEEEECTT--T----CTT
T ss_pred cc-----hHHHHHHHhc--------cCccEEEeccccc-ccccccc---HHHHHHHHHHcCCeEEeeccc--c----ccc
Confidence 55 8899999998 8999999988776 9999887 899999999999999999983 1 123
Q ss_pred hhHhhhcCccEEEEeccccCCCc---eeeEEe-cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHH
Q 018243 190 PVRRLVQAADSASVCLSKGLGAP---VGSVIV-GSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHK 265 (359)
Q Consensus 190 ~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (359)
...++..++|+++.|.+|++++- .+|.++ .++.+.+.++......|... ++..+.....+++.+.. ++++..+
T Consensus 177 ~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l--~p~~a~ll~rgl~Tl~l-Rm~~~~~ 253 (380)
T d1ibja_ 177 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL--APFDCWLCLRGIKTMAL-RIEKQQE 253 (380)
T ss_dssp TCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBC--CHHHHHHHHHHHTTHHH-HHHHHHH
T ss_pred cccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcC--CHHHHHHHHhcchhhhh-hHHHHHH
Confidence 34455558999999999999762 446554 56778888888888888777 66777788888887666 8999999
Q ss_pred HHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHh--cCcee--------c
Q 018243 266 KAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEE--HGVLV--------M 319 (359)
Q Consensus 266 ~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~--------~ 319 (359)
++..+.+.|++.|.++ +..|. ..+..+.+.+.. ...+..|.+.|+- .+... .
T Consensus 254 nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~--~~~a~~f~d~l~l~~~a~SlG~~~SLi~~ 331 (380)
T d1ibja_ 254 NARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VALSKHLVETTKYFSIAVSFGSVKSLISM 331 (380)
T ss_dssp HHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--HHHHHHHHHHCSSSEECSCCCSSSCEEEC
T ss_pred HHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccH--HHHHHHHHHhCCcCeEeeccCCccccccC
Confidence 9999999999987765 33331 234455665554 2456677777642 12211 1
Q ss_pred cC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 320 PE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 320 ~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
|. .++.||+++. + |+.+.+++.|+++++.+
T Consensus 332 p~~~th~~~~~e~r~~~Gi~~~lvRlSvG--l--E~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 332 PCFMSHASIPAEVREARGLTEDLVRISAG--I--EDVDDLISDLDIAFKTF 378 (380)
T ss_dssp TTTTTTCSCCSSSSSSSSCCTTCEEEECC--S--SCHHHHHHHHHHHHHSC
T ss_pred chhhhhhcCCHHHHHHcCCCcCeEEEEec--c--CCHHHHHHHHHHHHHhc
Confidence 10 2345999994 4 68888999998888754
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.1e-25 Score=196.96 Aligned_cols=323 Identities=18% Similarity=0.191 Sum_probs=210.4
Q ss_pred ccccCCCCCChHHHHHHHHHcCCCCCC-----ccCC----ChHHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHh-
Q 018243 6 VDLRSDTVTKPTEAMRAAMASAEVDDD-----VLMH----DPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVH- 73 (359)
Q Consensus 6 id~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~----~~~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~- 73 (359)
|.|.+...+.+++.+.+++.+...... .+.. .+..++.|+.+++++|++.. ++++|+|+++..++..+
T Consensus 3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~ 82 (376)
T d1eg5a_ 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVA 82 (376)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHH
T ss_pred EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhccc
Confidence 567777666666777777765432211 1111 22346678899999999753 77778888877777643
Q ss_pred --hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 74 --CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 74 --~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
...+|+.|+++...|.+........+..|++++.++.+.++.+|++++++.++ ++|++|+++++.+ +||
T Consensus 83 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~--------~~t~lv~is~v~~-~tG 153 (376)
T d1eg5a_ 83 ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD--------EDTFLVSIMAANN-EVG 153 (376)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC--------TTEEEEEEESBCT-TTC
T ss_pred ccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC--------CCceEEEEECCcc-ccc
Confidence 33567777777777655543122245568999999998999999999999999 8999999966665 999
Q ss_pred eecChhhHHHHHHHHHHc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHHHHH
Q 018243 152 RCLSVEYTDSVGEIAKKH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARR 229 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~ 229 (359)
...+ ++++.++++.+ ++++++|++|..|... .....+ ++|++++|+|||+|.++.|+++.+++.. ++.
T Consensus 154 ~~~~---~~~i~~~~~~~~~~~~~~vD~~q~~g~~~---~d~~~~--~~D~~~~s~~K~~gp~G~~~l~~~~~~~--~~p 223 (376)
T d1eg5a_ 154 TIQP---VEDVTRIVKKKNKETLVHVDAVQTIGKIP---FSLEKL--EVDYASFSAHKFHGPKGVGITYIRKGVP--IRP 223 (376)
T ss_dssp BBCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSC---CCCTTT--CCSEEEEEGGGGTSCTTCEEEEECTTSC--CCC
T ss_pred eeee---ehhhhhhhhhcccCceeEEEeeecccccc---cccccc--CccceecccceeecCCCceeEEeccCcc--cCC
Confidence 9988 67777777555 9999999998776553 223333 7899999999998743337777655421 110
Q ss_pred HHH-------hhCCCcchhHHHHHHH-HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecC--CccceEEEEEeccc
Q 018243 230 LRK-------TLGGGMRQVGVLCAAA-LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD--AVETNIVYFEITED 299 (359)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~~~~~~~~~~ 299 (359)
... ...+.........+.. ....................++.+.|... ....... ........+.++.
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~- 301 (376)
T d1eg5a_ 224 LIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL-GAHIITPLEISLPNTLSVSFPN- 301 (376)
T ss_dssp SBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT-TCEECSCTTSBCTTEEEEECTT-
T ss_pred cccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccc-cccccccccccccceeeeccCC-
Confidence 000 0001111111111111 11112222223344555677788888776 3333221 2234445566655
Q ss_pred hHHHHHHHHHHHHhcCceeccCC-----------------------CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 018243 300 SKLYAACLLKKLEEHGVLVMPES-----------------------STRVRIVVHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 300 ~~~~~~~~~~~l~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.++..+...|.++||.+..+. .+.+|++++.++|++|+|+++++|+++++
T Consensus 302 --~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 302 --IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp --CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 477888889999999875432 13599999999999999999999999876
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6e-25 Score=192.31 Aligned_cols=333 Identities=14% Similarity=0.100 Sum_probs=225.5
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ +....+|++.+++.+....... ....+....+.+.++++.+.+...+++||++|+..+++.+..
T Consensus 41 ~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~ 120 (404)
T d2byla1 41 RKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARK 120 (404)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcccccccccccCccccchhHHHHHHH
Confidence 357888875 2344559999998875543221 112345667888899999998889999999999999998853
Q ss_pred h---------cCCeEEecCCCcceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 76 T---------RGSEVILGDNSHIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 76 ~---------~g~~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
. ....++....+|..... ++ ....+ ..+..++.+ |++++++.+++
T Consensus 121 ~~~~~~~~~~~~~~i~~~~~~~hg~t~-~~-~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~------- 186 (404)
T d2byla1 121 WGYTVKGIQKYKAKIVFAAGNFWGRTL-SA-ISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD------- 186 (404)
T ss_dssp HHHHTTCCCTTCCEEEEETTCCCCCSH-HH-HTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTS-------
T ss_pred HhhhccccccccccccccCCCcccccc-ce-eccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCC-------
Confidence 1 12345544444332221 11 11111 112233433 89999999985
Q ss_pred CceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc--
Q 018243 135 PTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP-- 212 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-- 212 (359)
+++.+|++++..++.+-..++.+++++|+++|++||+++|+||++..............+.-.+|++ +++|.++++
T Consensus 187 ~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~--~~gK~l~gG~~ 264 (404)
T d2byla1 187 PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLY 264 (404)
T ss_dssp TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSS
T ss_pred CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEE--EECchhhCCCc
Confidence 6899999999888543356778999999999999999999999985322221222222232356766 555877543
Q ss_pred eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcCCCceEecCCccceE
Q 018243 213 VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNI 291 (359)
Q Consensus 213 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 291 (359)
..|.++.++++.+.+.. ...++|+..+++.++++...++...+ +..++..++.+++.+.|+++..--+..-...+.+
T Consensus 265 p~~av~~~~~i~~~~~~--~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~ 342 (404)
T d2byla1 265 PVSAVLCDDDIMLTIKP--GEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLL 342 (404)
T ss_dssp CCEEEEECHHHHTTSCT--TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTE
T ss_pred cceeeeechhhhhccCC--CCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHHhhccccceeeeecccE
Confidence 23667788888776532 23456666778888888888876654 3555677778888888887621111111235556
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 292 VYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
..+.+..+......++.++|.++|+.+.+.+.+.+|++++..++++++++++++|+++++++
T Consensus 343 ~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~al~~f 404 (404)
T d2byla1 343 NAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 404 (404)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCCchhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHcC
Confidence 55666543334677899999999999988777899999998999999999999999998753
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.94 E-value=3.3e-24 Score=184.40 Aligned_cols=311 Identities=16% Similarity=0.155 Sum_probs=224.2
Q ss_pred CCCCChH-HHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCC
Q 018243 11 DTVTKPT-EAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNS 87 (359)
Q Consensus 11 ~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~ 87 (359)
.++.++. ++..+.... ......|+. .|....||+.++++-|.+.++.++||..|+..++.+++ ++|+.|++++..
T Consensus 30 st~~~~~~~~~~~~~~~-~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~ 107 (394)
T d1e5ea_ 30 STFVFDNCQQGGNRFAG-QESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-KAGDHLISDECL 107 (394)
T ss_dssp SBCCCSSHHHHHHHHTT-SSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCC
T ss_pred CCeeeCCHHHHHHhhcC-CcCCceecCCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhc-ccccccccccce
Confidence 3555555 444444333 223445654 78899999999999999999999999999999998888 599999999999
Q ss_pred cceeecc-ccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH
Q 018243 88 HIHIYEN-GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA 166 (359)
Q Consensus 88 ~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~ 166 (359)
|.+++.. .......|+++..++.. |.+++++.++ +++++||++++.| |+..+.+ ++++++.+
T Consensus 108 yg~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~--------~~t~lv~~Etp~N-P~l~v~D---i~~~~~~~ 170 (394)
T d1e5ea_ 108 YGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMK--------PNTKIVYFETPAN-PTLKIID---MERVCKDA 170 (394)
T ss_dssp CHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHH
T ss_pred eehhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhc--------ccccEEEEeccCC-cceeeeh---hhhhhhcc
Confidence 8776531 12345678888888765 7889999999 8999999998887 9888877 78888766
Q ss_pred H-HcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHHHHHHHHHH--HHhhCCCcch
Q 018243 167 K-KHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKEFIKKARRL--RKTLGGGMRQ 240 (359)
Q Consensus 167 ~-~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~--~~~~~~~~~~ 240 (359)
+ ++|+++|+|.+ | ..+....++..++|+++.|.+|++++- .+|+++++++.....+.. +...|...
T Consensus 171 ~~~~g~~vvvDnT--~----atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~l-- 242 (394)
T d1e5ea_ 171 HSQEGVLVIADNT--F----CSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVI-- 242 (394)
T ss_dssp HTSTTCEEEEECT--T----TCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCC--
T ss_pred ccccCeEEEecCc--c----cCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCC--
Confidence 5 46899999997 2 123334455558999999999999763 458888888877765432 22345554
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC---------------ccceEEEEEeccchHHHH
Q 018243 241 VGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYA 304 (359)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~ 304 (359)
++..++....+++...- ++++..+++..+.++|++.|.++ +..|. ..+..+.|.+.. ....+
T Consensus 243 sp~~a~ll~rgl~TL~l-Rm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~-~~~~a 320 (394)
T d1e5ea_ 243 SPHDAWLITRGLSTLNI-RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-GFEGA 320 (394)
T ss_dssp CHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-HHHHH
T ss_pred ChHHHHHHHhhchhHHH-HHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC-CHHHH
Confidence 66778888888887766 89999999999999999998875 44331 235566677665 22245
Q ss_pred HHHHHHHHh--cCcee--------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEE--HGVLV--------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 305 ~~~~~~l~~--~gi~~--------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
..|.+.|+- .+... .|. .++.||+++. + |+++.+++.|+++++++.
T Consensus 321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG--l--Ed~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG--I--EDADELIADFKQGLDALL 393 (394)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC--S--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEec--c--CCHHHHHHHHHHHHHHhh
Confidence 566666532 22211 111 2457999995 3 678888888888887764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=6.5e-25 Score=196.37 Aligned_cols=304 Identities=14% Similarity=0.125 Sum_probs=197.4
Q ss_pred HHHHHHHHhCCCC---eEEcCCchHHHHHH-HHHhhh--hcCCeEEecCCCcceeeccccccccCCccceeee---cCCC
Q 018243 43 LETEMAKVMGKEA---GLFVPSGTMGNLIS-VLVHCE--TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK---NNQD 113 (359)
Q Consensus 43 l~~~la~~~~~~~---~~~~~~gt~a~~~~-l~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~---~~~~ 113 (359)
+.+.+++++|.+. ++++++||++...+ +.++.. .+++.|+++...|.+..+ + +...|++++.|+ .+++
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~-a--~~~~g~~~~~v~~~~~~~~ 175 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK-S--MVTAGFEPVVIENVLEGDE 175 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH-H--HHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHH-H--HHHcCCeeEEEEeeccCcc
Confidence 3455677788764 47888888655544 443321 356789999999999887 3 677888887773 4567
Q ss_pred CCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHh
Q 018243 114 GTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRR 193 (359)
Q Consensus 114 ~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 193 (359)
+.+|+++|++++++... +++.+|++.+ +++++|.+.+ +++|.++|++||+++|+|+||+.+..+........
T Consensus 176 ~~id~~~l~~~i~~~~~----~~~~~v~~~~-~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 176 LRTDLKAVEAKIQELGP----EHILCLHSTT-ACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp EECCHHHHHHHHHHHCG----GGEEEEEEES-SCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhccc----cCeEEEEEeC-CCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 89999999999974211 4677777744 5558898765 89999999999999999999865544322211111
Q ss_pred h-hcCccEEEEeccccCCCcee-eEEec-CHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH-HHhHHHHhhhHHHHHHH
Q 018243 194 L-VQAADSASVCLSKGLGAPVG-SVIVG-SKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL-QENVLVMLDGDHKKAKL 269 (359)
Q Consensus 194 ~-~~~~d~~~~s~~K~~g~~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 269 (359)
. ..++|++++|.||++++|.| |+++. ++...+.+.......+... ......+.+..+ ........+....++++
T Consensus 248 ~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 325 (445)
T d3bc8a1 248 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASAS--PSLDVLITLLSLGCSGYRKLLKERKEMFVY 325 (445)
T ss_dssp HHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCBCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcccCc--chHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 1 23689999999999988876 55554 5666665443222222211 222222222222 12222345555666666
Q ss_pred HHHHHhcCC---CceEecCCccceEEEEEeccc---hHHHHHHHHHHHHhcCceec----cC------------------
Q 018243 270 LAEGLNQLK---GLRVDVDAVETNIVYFEITED---SKLYAACLLKKLEEHGVLVM----PE------------------ 321 (359)
Q Consensus 270 l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~~~----~~------------------ 321 (359)
+.+.|+++. +..+...+......++.+... ...+..++...|.+.||... +.
T Consensus 326 ~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~ 405 (445)
T d3bc8a1 326 LSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHAD 405 (445)
T ss_dssp HHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSS
T ss_pred HHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCc
Confidence 666665531 444433333444455544321 22467788888988887421 00
Q ss_pred --CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018243 322 --SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVCEENGN 359 (359)
Q Consensus 322 --~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 359 (359)
....+|++++..++++|+|+++++|+++++++++++.|
T Consensus 406 ~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~~k 445 (445)
T d3bc8a1 406 NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTR 445 (445)
T ss_dssp CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 12359999999999999999999999999999987654
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.5e-24 Score=184.18 Aligned_cols=309 Identities=18% Similarity=0.185 Sum_probs=215.3
Q ss_pred CCCChHHHHHHHHHcCCCCCCccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcc
Q 018243 12 TVTKPTEAMRAAMASAEVDDDVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHI 89 (359)
Q Consensus 12 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~ 89 (359)
++.++.++-.+...+.......|+. .|....||+.|+++-|.+.+++++||..|+..++.+++ ++||+|++++..|+
T Consensus 30 tf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg 108 (421)
T d2ctza1 30 SYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYG 108 (421)
T ss_dssp CBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCH
T ss_pred CeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhc-ccccceeecCCcCC
Confidence 4445454444444433333445654 78899999999999999999999999999999999998 59999999999987
Q ss_pred eeeccc-cccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHH
Q 018243 90 HIYENG-GISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168 (359)
Q Consensus 90 ~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~ 168 (359)
+++... ......|+++..++.. -+.+..+..++ +++++||+|+|.| |+..+.+ +++|+++|++
T Consensus 109 ~t~~l~~~~~~~~gi~~~~~d~~----~~~~~~~~~~~--------~~t~li~~EtpsN-P~l~v~D---i~~i~~iA~~ 172 (421)
T d2ctza1 109 GTFNQFKVTLKRLGIEVRFTSRE----ERPEEFLALTD--------EKTRAWWVESIGN-PALNIPD---LEALAQAARE 172 (421)
T ss_dssp HHHHHHHTHHHHTTCEEEECCTT----CCHHHHHHHCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHHHH
T ss_pred chhHHHHHHHhhccccceecccc----cCcchhccccC--------CCceEEEEcCCCc-ceeEecc---hHHHHHHHHh
Confidence 765311 2245578777777532 13455566666 8999999998777 9988877 8999999999
Q ss_pred cCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc---eeeEEecCHH-----------------------
Q 018243 169 HGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIVGSKE----------------------- 222 (359)
Q Consensus 169 ~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~~~~~----------------------- 222 (359)
+|+++|||++ ++.. +....++..++|+++.|.+|++++- .||+++.+++
T Consensus 173 ~g~~~vvDnT--~a~t---P~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~ 247 (421)
T d2ctza1 173 KGVALIVDNT--FGMG---GYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRL 247 (421)
T ss_dssp HTCEEEEECG--GGGG---GTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCH
T ss_pred cCCceEeccc--cccc---ceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHH
Confidence 9999999998 3211 2223455569999999999999763 4577765322
Q ss_pred --------HHHHHH-HHHHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCce-EecCC------
Q 018243 223 --------FIKKAR-RLRKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGLNQLKGLR-VDVDA------ 286 (359)
Q Consensus 223 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~~------ 286 (359)
++.+.+ ......|... ++..++....+++...- ++++..+++..+.+.|++.|.++ +..|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~G~~~--sP~~a~l~~rgl~TL~l-Rm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~ 324 (421)
T d2ctza1 248 TEAFGELAFIVKARVDGLRDQGQAL--GPFEAWVVLLGMETLSL-RAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPH 324 (421)
T ss_dssp HHHHGGGHHHHHHHHTHHHHHCCCC--CHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTT
T ss_pred HHHhccHHHHHHHHHHHHHhccCCC--CHHHHHHHhcCCcchhh-HHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCcc
Confidence 122211 1223456666 66777788888887665 88999999999999999988774 43331
Q ss_pred ----------ccceEEEEEeccchHHHHHHHHHHHHhcCcee----------ccC-----------------CCcEEEEE
Q 018243 287 ----------VETNIVYFEITEDSKLYAACLLKKLEEHGVLV----------MPE-----------------SSTRVRIV 329 (359)
Q Consensus 287 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~----------~~~-----------------~~~~lRi~ 329 (359)
..+.++.|.+.. ....+..|.+.|+--.+.+ .|. .++.||++
T Consensus 325 ~~~a~~~~~g~~G~~~sf~l~~-~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlS 403 (421)
T d2ctza1 325 HDRAQKYFKGKPGAVLTFGLKG-GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp HHHHHHHHTTCCCSEEEEEETT-HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred HHHHHHhcCCCCceEEEEEecC-CHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEE
Confidence 236677888865 2234566766664221111 111 34569999
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 018243 330 VHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 330 ~~~~~~~~~i~~~~~~l~~~~ 350 (359)
+. + |+.+++++-|++++
T Consensus 404 vG--l--Ed~eDLi~DL~qAL 420 (421)
T d2ctza1 404 VG--L--EHVEDLKAELKEAL 420 (421)
T ss_dssp CC--S--SCHHHHHHHHHHHT
T ss_pred ec--c--CCHHHHHHHHHHhc
Confidence 85 3 67777888877765
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=1.4e-24 Score=189.03 Aligned_cols=312 Identities=16% Similarity=0.177 Sum_probs=204.1
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe----EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceee
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG----LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIY 92 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~----~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~ 92 (359)
++.|+++|.+...++..-......+++++.+++++|.+.. ++++|||.++..++..+.. +++.+++....++...
T Consensus 12 ~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 90 (361)
T d1m32a_ 12 SRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-PQDKVLIVSNGAYGAR 90 (361)
T ss_dssp CHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-TTCCEEEEESSHHHHH
T ss_pred CHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh-hccccceeeehhhhhh
Confidence 3789998876543332211235568999999999999742 4567889999999999885 6666655554443322
Q ss_pred ccccccccCCccceeeecCCCCCCC--HHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC
Q 018243 93 ENGGISTIGGVHPRTVKNNQDGTMD--IDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG 170 (359)
Q Consensus 93 ~~~~~~~~~g~~~~~v~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~ 170 (359)
. .......+.....+........+ .+....... ++++++.+.+..+ .||...| +++|.++|+++|
T Consensus 91 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~-~tG~~~~---i~~i~~~~~~~g 157 (361)
T d1m32a_ 91 M-VEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD--------PTISHIAMVHSET-TTGMLNP---IDEVGALAHRYG 157 (361)
T ss_dssp H-HHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC--------TTCCEEEEESEET-TTTEECC---HHHHHHHHHHHT
T ss_pred H-HHHhhhhhcccccccccccCCccchhhHHHHHhc--------cCccceEEEeeec-ccccchh---hhhhhhhhcccc
Confidence 2 12244445555555444333333 344444445 6899999966555 8999988 899999999999
Q ss_pred cEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHH---------------HHH--
Q 018243 171 LKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARR---------------LRK-- 232 (359)
Q Consensus 171 ~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~---------------~~~-- 232 (359)
+++++|.+|+.|... .....+ ++|++++|.+|++++|.| |+++.+++..+..+. ...
T Consensus 158 ~~~~vDa~qs~G~~~---~d~~~~--~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T d1m32a_ 158 KTYIVDAMSSFGGIP---MDIAAL--HIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNH 232 (361)
T ss_dssp CEEEEECTTTTTTSC---CCTTTT--TCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTT
T ss_pred eeeEeecccccCccc---cccccc--ccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccc
Confidence 999999999876653 233344 799999999999988878 888888776544210 000
Q ss_pred -hhCCCcchhHHHHHHHHHHH----HH-hHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-ccce-EEEEEeccchHHHH
Q 018243 233 -TLGGGMRQVGVLCAAALVAL----QE-NVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-VETN-IVYFEITEDSKLYA 304 (359)
Q Consensus 233 -~~~~~~~~~~~~~~~~~~~l----~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~ 304 (359)
....+.. .....+...++ .+ ..+....+....++.+.+.++.. ++.+..++ ..++ .+.+.++.....+.
T Consensus 233 ~~~~~t~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~~~~~ 309 (361)
T d1m32a_ 233 GKWRFTSP--THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRF 309 (361)
T ss_dssp TCCSSCCC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCH
T ss_pred cccCCCCC--chhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCCCCCH
Confidence 1111221 11122222222 22 22334445666778888888887 66553222 2233 34566654334577
Q ss_pred HHHHHHHHhcCceeccC---CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKLEEHGVLVMPE---SSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 305 ~~~~~~l~~~gi~~~~~---~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.++.+.|.++||.+.++ ..+.+||++...++++|+++++++|+++|
T Consensus 310 ~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 310 SEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 89999999999998664 35579999655689999999999999876
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.93 E-value=8.4e-24 Score=185.42 Aligned_cols=330 Identities=15% Similarity=0.113 Sum_probs=214.0
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCcc---CCChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDVL---MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCE 75 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~ 75 (359)
.++|||.++ +....+|++.+++.+........ ........+++.+++..+.+...++.+|++|+..++..+..
T Consensus 39 ~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~ 118 (404)
T d1z7da1 39 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRK 118 (404)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHH
Confidence 357888875 33445699999998754432211 12345577788888888988889999999999999988753
Q ss_pred h---------cCCeEEecCCCcceeeccccccccCCc------------cceeeecCCCCCCCHHHHHHHhcCCCCCccC
Q 018243 76 T---------RGSEVILGDNSHIHIYENGGISTIGGV------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVY 134 (359)
Q Consensus 76 ~---------~g~~vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~ 134 (359)
. ....++.....|..... . .....+. .+..++.+ +.+.+...+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~hg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~------- 184 (404)
T d1z7da1 119 WGYEVKKIPENMAKIVVCKNNFSGRTL-G-CISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD------- 184 (404)
T ss_dssp HHHHTSCCCTTCCEEEEETTC----------------------------CEEEECTT-----CHHHHHHHHTS-------
T ss_pred HHhhcccccccccccccccccCCCCcc-c-ccccccccccccCCCCCCccccccccc-----hHHHHHHHhcC-------
Confidence 1 11234444443332221 0 0111111 11111222 67778877764
Q ss_pred CceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC--c
Q 018243 135 PTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA--P 212 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~--~ 212 (359)
+++.+|++++...+.+...++.+++++|+++|++||+++|+||++..............+.-.+|++ +++|.+++ .
T Consensus 185 ~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDiv--t~gK~l~gG~~ 262 (404)
T d1z7da1 185 PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHY 262 (404)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSS
T ss_pred CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEE--EEcccccCCCC
Confidence 6899999999888533345677999999999999999999999985222221111222233357777 45577743 2
Q ss_pred eeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHH----HHHHHHHhcCCCceEecCCc
Q 018243 213 VGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKA----KLLAEGLNQLKGLRVDVDAV 287 (359)
Q Consensus 213 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~----~~l~~~l~~~~g~~~~~~~~ 287 (359)
..|.++.++++.+.++.. ..++|+..+++.++++...++...+ ...++..++. +.+.+.+++.+.+.-. ..
T Consensus 263 p~~~v~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v--rg 338 (404)
T d1z7da1 263 PISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDV--RG 338 (404)
T ss_dssp CCEEEEECHHHHTTCCTT--CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE--EE
T ss_pred CcccccchHHHHccCCCC--CcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEE--Ee
Confidence 346788888887765432 3566677788888888888865433 2333333333 4444555555443222 23
Q ss_pred cceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 288 ETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.++.+.+..+ .....++.++|.++|+.+.+.+...||+.++..++++++++++++|+++++++
T Consensus 339 ~Gl~~~i~~~~~-~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 339 KGLLCAIEFKNE-LVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp ETTEEEEEECTT-TCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCcEEEEEEcCC-cccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 566677777652 23566788999999999988888899999988999999999999999999876
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=6e-25 Score=195.86 Aligned_cols=286 Identities=17% Similarity=0.153 Sum_probs=190.2
Q ss_pred HHHHHHhCCCCe-EEcCCch-HHHHHHHHHhhh-hcCCeEEecCCCcceeeccccccccCCccceeee---cCCCCCCCH
Q 018243 45 TEMAKVMGKEAG-LFVPSGT-MGNLISVLVHCE-TRGSEVILGDNSHIHIYENGGISTIGGVHPRTVK---NNQDGTMDI 118 (359)
Q Consensus 45 ~~la~~~~~~~~-~~~~~gt-~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~---~~~~~~~~~ 118 (359)
..+++++|.+.+ .++.+|+ +++.+++.+... .+++.|++++..|.+.++ + +...|+.++.++ .++++.+|+
T Consensus 120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k-~--~~~~g~~~~~v~~~~~~~~~~~d~ 196 (434)
T d2z67a1 120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK-A--VSFVGMNMRLVETVLDGDRVYVPV 196 (434)
T ss_dssp HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH-H--HHHTTCEEEEECCEEETTEEECCH
T ss_pred HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHH-H--HHHhCCcceEEEeecCCCccCCCH
Confidence 446677888764 4444444 455556665542 367899999999999887 3 667788877764 355678999
Q ss_pred HHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCc
Q 018243 119 DLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAA 198 (359)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~ 198 (359)
++|++.++++.+. .++.+|++ +.+++++|.+.+ +++|.++|++||+++|+|+||+.+.....+........++
T Consensus 197 ~~l~~~i~~~~~~---~~~~~v~~-~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~ 269 (434)
T d2z67a1 197 EDIENAIKKEIEL---GNRPCVLS-TLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV 269 (434)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEE-ESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhhc---CCceEEEe-ccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc
Confidence 9999999843211 35667776 445557888755 8999999999999999999985544332222222333479
Q ss_pred cEEEEeccccCCCcee-eEEe-cCHHHHHHHHHHHHhhCCCcchh-HHHHHHHHHHH-HHhHHHHhhhHHHHHHHHHHHH
Q 018243 199 DSASVCLSKGLGAPVG-SVIV-GSKEFIKKARRLRKTLGGGMRQV-GVLCAAALVAL-QENVLVMLDGDHKKAKLLAEGL 274 (359)
Q Consensus 199 d~~~~s~~K~~g~~~g-g~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l 274 (359)
|++++|+||++++|.| ++++ .++...+++.. ....+.+.. ....++.+..+ .....+..++..++++++++.|
T Consensus 270 D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L 346 (434)
T d2z67a1 270 DAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 346 (434)
T ss_dssp SEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCccccccCCCccccccCcHHHHHHHHh---hcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 9999999999988877 5554 46667666433 222222222 22222222222 2333446677778888888888
Q ss_pred hcC---CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceec---------------cCCCcEEEEEeCCCCCH
Q 018243 275 NQL---KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVM---------------PESSTRVRIVVHHQISA 336 (359)
Q Consensus 275 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~---------------~~~~~~lRi~~~~~~~~ 336 (359)
+++ .+..+... .....+.+.+.. +..++...|.+.||... ......+|++++..+|+
T Consensus 347 ~~l~~~~g~~ll~~-~~~~~~~~~~~~----~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~ 421 (434)
T d2z67a1 347 NDLSKKTGGKFLDV-ESPIASCISVNS----DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRT 421 (434)
T ss_dssp HHHHHHSSCCBCCC-CCSSEEEEECSS----CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCH
T ss_pred HHhhhhcCceecCC-CCCceeeeecCC----CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCH
Confidence 764 35565432 233444455544 56788899999998541 11246799999999999
Q ss_pred HHHHHHHHHHHH
Q 018243 337 NDVHYTLSCFQK 348 (359)
Q Consensus 337 ~~i~~~~~~l~~ 348 (359)
+|||+++++|++
T Consensus 422 edID~~i~~L~k 433 (434)
T d2z67a1 422 EDIVNSVSKLEK 433 (434)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.93 E-value=5.2e-25 Score=194.71 Aligned_cols=325 Identities=14% Similarity=0.067 Sum_probs=209.5
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCC----CCc---c--CCChHHHHHHHHHHHHhCCCC--eEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVD----DDV---L--MHDPTAFRLETEMAKVMGKEA--GLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~----~~~---~--~~~~~~~~l~~~la~~~~~~~--~~~~~~gt~a~~~~l~ 71 (359)
...+.|++...+.++..+.+++.+.... ... + ......+++++.+++++|++. .+++.++|+++..++.
T Consensus 26 ~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~ 105 (404)
T d1qz9a_ 26 EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLS 105 (404)
T ss_dssp TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHH
T ss_pred CCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhh
Confidence 4567888887777666666665543211 111 0 012345789999999999975 4788888888877665
Q ss_pred Hh-----hhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccc
Q 018243 72 VH-----CETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTH 146 (359)
Q Consensus 72 ~~-----~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~ 146 (359)
.. ...+++.+++.+..|++... . ....+.++..+....++..+.+.+++.++ ++|++|.+.+..
T Consensus 106 ~~~~~~~~~~~~~~vi~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~T~lV~i~~v~ 174 (404)
T d1qz9a_ 106 AALRVQATRSPERRVIVTETSNFPTDL--Y-IAEGLADMLQQGYTLRLVDSPEELPQAID--------QDTAVVMLTHVN 174 (404)
T ss_dssp HHHHHHHHHSTTCCEEEEETTSCHHHH--H-HHHHHHHHHCSSCEEEEESSGGGHHHHCS--------TTEEEEEEESBC
T ss_pred hhhhhhcccCCCcEEEEeccccchHHH--H-HHhhhheeeeeceeccccccchhHHHhcC--------CCceEEEEeccc
Confidence 33 22467888888877766543 1 22223344434333445568889999998 899999996666
Q ss_pred cCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCC-cee-eEEecCHHHH
Q 018243 147 ANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGA-PVG-SVIVGSKEFI 224 (359)
Q Consensus 147 ~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~-~~g-g~~~~~~~~~ 224 (359)
+ .||...| +++|+++|+++|+++++|.+|+.|... .....+ ++|++++|.|||+++ |.| |+++.++...
T Consensus 175 ~-~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~ 245 (404)
T d1qz9a_ 175 Y-KTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP---VDLHQA--GADYAIGCTYKYLNGGPGSQAFVWVSPQLC 245 (404)
T ss_dssp T-TTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC---CCHHHH--TCSEEEECSSSTTCCCTTCCCEEEECTTTT
T ss_pred c-cccceec---HHHHhccccccccceeEEeeccccccc---cccccc--cceEEEEechhhcccCCceEEEEEechhhh
Confidence 5 8999998 899999999999999999999776553 334444 889999999999855 443 6777776654
Q ss_pred HHHHHHHH-----------------------hhCCCcchhHHHHHHH-HHHHH-HhHHHHhh---hHHHHHHHHHHHHhc
Q 018243 225 KKARRLRK-----------------------TLGGGMRQVGVLCAAA-LVALQ-ENVLVMLD---GDHKKAKLLAEGLNQ 276 (359)
Q Consensus 225 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~-~~~l~-~~~~~~~~---~~~~~~~~l~~~l~~ 276 (359)
+.+..... ....+........... ...+. .......+ ........+.+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 325 (404)
T d1qz9a_ 246 DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA 325 (404)
T ss_dssp TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc
Confidence 43221000 0011111111111111 22221 11121222 222333444555556
Q ss_pred CCCceEecCC---ccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Q 018243 277 LKGLRVDVDA---VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVH-HQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 277 ~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~-~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+++++..+. ..+.++.|.++ ++.++.+.|.++||.+....++.|||++. .++|++||++++++|++++++
T Consensus 326 ~~~~~i~~p~~~~~r~~~vsf~~~-----~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 326 AHELTLVTPREHAKRGSHVSFEHP-----EGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp TSCCEECSCSSGGGBCSEEEEECT-----THHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCccceeeEEEEecC-----CHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6788886432 23566666654 46678999999999875555678999985 579999999999999998875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=8.2e-24 Score=183.98 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=217.3
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc---cCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV---LMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~~ 73 (359)
.++|||.++ +....+|++.+++.++...... ....+...++.+.+.+..... ...+++||++|+..+++.+
T Consensus 37 ~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~A 116 (387)
T d1vefa1 37 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFA 116 (387)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHH
Confidence 357888774 4445568888888875432211 112455566666666655443 3588999999999999998
Q ss_pred hhhcC-CeEEecCCC-cceeeccccccccCC------------ccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeE
Q 018243 74 CETRG-SEVILGDNS-HIHIYENGGISTIGG------------VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRL 139 (359)
Q Consensus 74 ~~~~g-~~vl~~~~~-~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 139 (359)
....+ .+|+....+ |..+.. + ....+ ..+..++.+ |.+.|++.++ +++.+
T Consensus 117 r~~t~r~~ii~~~~~yHG~t~~--~-~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~--------~~iAa 180 (387)
T d1vefa1 117 RAHTGRKKFVAAMRGFSGRTMG--S-LSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVD--------EETAA 180 (387)
T ss_dssp HHHHSCCEEEEETTCCCCSSHH--H-HHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCC--------TTEEE
T ss_pred HhhcccceecccccCCCCCccc--e-EeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcC--------CCeEE
Confidence 75444 355555544 443321 1 11222 122233443 8999999988 78999
Q ss_pred EEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccC--CCceeeEE
Q 018243 140 ICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL--GAPVGSVI 217 (359)
Q Consensus 140 v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~--g~~~gg~~ 217 (359)
|++++...+.+-..++.+++++++++|++||+++|+||++..............+.-.+|+++++ |.+ |.|.++ +
T Consensus 181 vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~-~ 257 (387)
T d1vefa1 181 VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGV-A 257 (387)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEE-E
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCccccc-c
Confidence 99999888543346778999999999999999999999975332221222223333367777665 666 434444 5
Q ss_pred ecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC--CCceEecCCccceEEEE
Q 018243 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL--KGLRVDVDAVETNIVYF 294 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~~~~~~~~ 294 (359)
+..++..+.+.. ...+.|+..+++.++++...++...+ +..++..+..+++.+.|+++ +.+.-. ...+.+..+
T Consensus 258 ~~~~~~~~~~~~--~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~v--rg~Gl~~~i 333 (387)
T d1vefa1 258 VMREEVARSMPK--GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV--RGMGLMVGL 333 (387)
T ss_dssp EEEHHHHHTSCT--TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE--EEETTEEEE
T ss_pred ccceeeeecccc--CCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceEEE--eecceEEEE
Confidence 566666555422 24567777788999999988876644 35566778888999999876 222211 235666777
Q ss_pred EeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 295 EITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+..+ ....+.+.+.++|+.+.+.+...+|+.++..++++++++++++|++++
T Consensus 334 e~~~~---~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 334 ELKEK---AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EESSC---SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCC---chHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 77763 445666677889999888888899999998999999999999999886
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.93 E-value=5.4e-23 Score=177.13 Aligned_cols=316 Identities=16% Similarity=0.136 Sum_probs=225.4
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHHHH----HHHHhCCCC-----eEEcCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLETE----MAKVMGKEA-----GLFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~----la~~~~~~~-----~~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
++.+++++.....+ ..+|+..+..+++|.. .+++|+.+. .+-..||+.|+..++.+++ +|||
T Consensus 44 S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all-~pgD 122 (470)
T d1rv3a_ 44 SRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV-EPHG 122 (470)
T ss_dssp CHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT-CTTC
T ss_pred CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc-CCCC
Confidence 47888888764433 2346777777777755 478899862 2778899999999999999 5999
Q ss_pred eEEecCCCcceeecccccccc-------CCccceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 80 EVILGDNSHIHIYENGGISTI-------GGVHPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~~~~~-------~g~~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+|+..+..+......+.+... ...+.+.++.+ +++.+|.+++++..++ .++++|++ ....+|
T Consensus 123 ~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~-------~kPklIi~-G~S~y~-- 192 (470)
T d1rv3a_ 123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL-------FHPKLIIA-GTSCYS-- 192 (470)
T ss_dssp EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH-------HCCSEEEE-CCSSCC--
T ss_pred eEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh-------hCcceEee-chhhcc--
Confidence 999877665555432211111 11344555555 4588999999999986 68999998 434333
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHH---------
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKE--------- 222 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~--------- 222 (359)
..++ +++++++|++.|+++++|.+|..|... .+.-..++ ..+|+++.|.||+|.+|.||+++.+++
T Consensus 193 r~~d---~~~~reIad~vga~l~~D~aH~aGLIA-~g~~~sPl-~~aDvvt~tTHKtlrGPrgGiI~~~~~~~~~~~~~~ 267 (470)
T d1rv3a_ 193 RNLD---YGRLRKIADENGAYLMADMAHISGLVV-AGVVPSPF-EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTG 267 (470)
T ss_dssp SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHH-HTSSCCGG-GTCSEEEEESSGGGCCCSCEEEEEECSBCC------
T ss_pred ccCC---HHHHHHHHhccCCeEEecchhhhhhcc-ccccCChh-heeeeeeeehhhhccCCcceEEEEcccccccccccc
Confidence 4444 899999999999999999999777654 33334445 378999999999999999998887543
Q ss_pred ------HHHHHHHHHH-hhCCCcchhHHHHHHHH---HHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 223 ------FIKKARRLRK-TLGGGMRQVGVLCAAAL---VALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 223 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
+.+++..... ..-++. ....+++.+. .++........++...+++.|.+.|.+. |+.+........++
T Consensus 268 ~~~~~~~~~~i~~avFPg~qggp-h~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlv 345 (470)
T d1rv3a_ 268 KEILYNLESLINSAVFPGLQGGP-HNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLI 345 (470)
T ss_dssp -CCBCCHHHHHHHHHTTTTCCSC-CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred chhHHHHHHHHhhhcCccccccc-hhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceE
Confidence 5555543321 111222 1223333322 2222223447788899999999999999 99997777778888
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcee----ccC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLV----MPE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.+.. .+.+..++.+.|++.||.+ .|+ .+.+|||.. +.++.++|++++.+.|.++++
T Consensus 346 lvdl~~-~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 346 LVDLRS-KGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp EEEGGG-GTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeecc-cCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 888865 4567888888899999988 444 346799964 557889999999999999885
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.92 E-value=3.9e-23 Score=177.38 Aligned_cols=316 Identities=17% Similarity=0.124 Sum_probs=210.2
Q ss_pred HHHHHHHHHcCCCC--------CCccCCChHHHHHH----HHHHHHhCCCCe-----EEcCCchHHHHHHHHHhhhhcCC
Q 018243 17 TEAMRAAMASAEVD--------DDVLMHDPTAFRLE----TEMAKVMGKEAG-----LFVPSGTMGNLISVLVHCETRGS 79 (359)
Q Consensus 17 ~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~----~~la~~~~~~~~-----~~~~~gt~a~~~~l~~~~~~~g~ 79 (359)
++.+++++.....+ ..+|+..+..+++| ++.+++|+.++. +-..||+.|+..++.+++ +|||
T Consensus 40 S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all-~pgD 118 (463)
T d2a7va1 40 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL-QPHD 118 (463)
T ss_dssp CHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-CSCE
T ss_pred CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc-CCCc
Confidence 47888888764432 22455545555554 557889999874 788899999999999998 5999
Q ss_pred eEEecCCCcceeecccc-----ccccCCc--cceeeecC-CCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCc
Q 018243 80 EVILGDNSHIHIYENGG-----ISTIGGV--HPRTVKNN-QDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGG 151 (359)
Q Consensus 80 ~vl~~~~~~~~~~~~~~-----~~~~~g~--~~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG 151 (359)
+|+..++.+......+- .....|. +...+..+ +++.+|.+++++..++ .++++|++ ....+|
T Consensus 119 ~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~-------~kPklIi~-G~S~y~-- 188 (463)
T d2a7va1 119 RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-------FRPRLIIA-GTSAYA-- 188 (463)
T ss_dssp ECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH-------HCCSEEEE-CCSSCC--
T ss_pred eEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhh-------cCCceEEe-cccccc--
Confidence 99977666555443220 1112232 33444444 5688999999999986 68999998 434333
Q ss_pred eecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCH----------
Q 018243 152 RCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSK---------- 221 (359)
Q Consensus 152 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~---------- 221 (359)
..++ +++++++|++.|+++++|.+|..|... .+.-..++ ..+|+++.|.||+|.+|.||+++.++
T Consensus 189 r~~d---~~~~reIad~vga~l~~D~aH~aGLIA-~g~~~sP~-~~aDvvt~tTHKTlrGPrgGiIl~~~~~~~~~~~~~ 263 (463)
T d2a7va1 189 RLID---YARMREVCDEVKAHLLADMAHISGLVA-AKVIPSPF-KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTG 263 (463)
T ss_dssp SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCGG-GTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTE
T ss_pred cccC---HHHHHHHhhcccceEEechhhhhHHhh-hhhhcChh-hhhhhhhchhhhhhcCCCceEEEEcccccccccccC
Confidence 3444 899999999999999999999777664 33334444 47899999999999999999888865
Q ss_pred -----HHHHHHHHHHH-hhCCCcchhHHHHHHH---HHHHHHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEE
Q 018243 222 -----EFIKKARRLRK-TLGGGMRQVGVLCAAA---LVALQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIV 292 (359)
Q Consensus 222 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 292 (359)
++.+++..... ..-++.. ...+++.+ ..+++...++..++..++++.|.+.|.+. |+.+.........+
T Consensus 264 ~~~~~~~~~~i~~avFPg~qggph-~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlv 341 (463)
T d2a7va1 264 REIPYTFEDRINFAVFPSLQGGPH-NHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLV 341 (463)
T ss_dssp EEEECCCHHHHHHHHTTTTCCSCC-HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEE
T ss_pred ccchhHHHHHhhhhcCcccchhhh-hhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCcee
Confidence 45555543221 1111121 22222222 22333334448888999999999999999 99998777778889
Q ss_pred EEEeccchHHHHHHHHHHHHhcCcee----ccC-----CCcEEEEEe----CCCCCHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLV----MPE-----SSTRVRIVV----HHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~----~~~-----~~~~lRi~~----~~~~~~~~i~~~~~~l~~~~~ 351 (359)
++.+.. .+.+.....+.|.+.||.+ .|+ .+.+|||.. +.++.++|+.++.+.|.++++
T Consensus 342 lvdl~~-~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 342 LVDLRP-KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp EEECTT-TTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeeccc-cCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999865 3568888899999999988 343 456799964 446788999999999998875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.92 E-value=5.2e-24 Score=186.49 Aligned_cols=313 Identities=18% Similarity=0.205 Sum_probs=210.7
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--eE-EcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeec
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--GL-FVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYE 93 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~~-~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~ 93 (359)
+++|+++|.....++..-.......++++.+++++|.+. .+ +++|||.++..++..+. .+++++++....|++...
T Consensus 30 ~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 108 (377)
T d1vjoa_ 30 HPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-EPGDVVLIGVAGYFGNRL 108 (377)
T ss_dssp CHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHH
T ss_pred CHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc-ccccccceeeechhhhhh
Confidence 489999998754444332234567899999999999864 44 45667889999988888 489999888888766543
Q ss_pred cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEE
Q 018243 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKL 173 (359)
Q Consensus 94 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~l 173 (359)
.......+.....+....+...+.+..+....+ .+++++.+.+ .+|.||...| ++++.++|+++|+++
T Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~~~tg~~~~---i~~i~~~~~~~g~~~ 176 (377)
T d1vjoa_ 109 -VDMAGRYGADVRTISKPWGEVFSLEELRTALET-------HRPAILALVH-AETSTGARQP---LEGVGELCREFGTLL 176 (377)
T ss_dssp -HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH-------HCCSEEEEES-EETTTTEECC---CTTHHHHHHHHTCEE
T ss_pred -hhhhhhhcccccccccCCCCcccchhhhhhhhc-------Ccceeeeeee-eeccceeeec---hhhhhhhhhhccceE
Confidence 122344454555555444555566666655553 6778888855 5558999888 899999999999999
Q ss_pred EEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHH-----------------h--
Q 018243 174 HIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRK-----------------T-- 233 (359)
Q Consensus 174 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~-----------------~-- 233 (359)
++|.+|++|... .....+ ++|++++|.+|++++|.| |+++.++...+....... .
T Consensus 177 ~vDa~~~~g~~~---~~~~~~--~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (377)
T d1vjoa_ 177 LVDTVTSLGGVP---IFLDAW--GVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSER 251 (377)
T ss_dssp EEECTTTTTTSC---CCTTTT--TCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTC
T ss_pred EEecchhhhhhh---hccccc--ccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCccc
Confidence 999998776543 233333 789999999999988777 778888877765331110 0
Q ss_pred hCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-cc-ceEEEEEeccchHHHHHHH
Q 018243 234 LGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-VE-TNIVYFEITEDSKLYAACL 307 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 307 (359)
...++. ............ +...+...++..++..++.+.+.+. ++....++ .. ...+.+.+++ +.+..++
T Consensus 252 ~~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~--~~~~~~l 327 (377)
T d1vjoa_ 252 VYHHTA-PINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPD--GVDGKAV 327 (377)
T ss_dssp CCCSCC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCT--TCCHHHH
T ss_pred cccccc-ceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCC--CCCHHHH
Confidence 011111 111111111111 2334446666777888999999887 66553222 22 2345566654 3578899
Q ss_pred HHHH-HhcCceeccC----CCcEEEEE-eCCCCCHHHHHHHHHHHHHHHH
Q 018243 308 LKKL-EEHGVLVMPE----SSTRVRIV-VHHQISANDVHYTLSCFQKIYA 351 (359)
Q Consensus 308 ~~~l-~~~gi~~~~~----~~~~lRi~-~~~~~~~~~i~~~~~~l~~~~~ 351 (359)
.+.| .++||.+..+ .+..+||+ +++..+++||++++++|+++++
T Consensus 328 ~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 328 ARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 9988 6779988543 34679999 4556789999999999998874
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=4.3e-23 Score=177.09 Aligned_cols=310 Identities=14% Similarity=0.084 Sum_probs=210.7
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCCe--EEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeecc
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYEN 94 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~ 94 (359)
+|+|+++|.+...++..-...+...+.++.++++++.++. ++++|||.++.+++..++ ++|+++++....+++...
T Consensus 12 ~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~-~~g~~vlv~~~G~f~~~~- 89 (348)
T d1iuga_ 12 HPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-APGERVLVPVYGKFSERF- 89 (348)
T ss_dssp CHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEECSHHHHHH-
T ss_pred CHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc-cccccceeecchHHHHHH-
Confidence 4899999998655443322235568889999999998763 677889999999999998 489988887777666443
Q ss_pred ccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcC--cE
Q 018243 95 GGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHG--LK 172 (359)
Q Consensus 95 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~--~~ 172 (359)
...++..+.++..+..+....+++++ ..+ .+++.|++.| .++.||...| +++|.++|++++ .+
T Consensus 90 ~~~a~~~~~~~~~~~~~~g~~~~~~~----~~~-------~~~~~v~~~h-~eTstG~~~~---i~~i~~~~~~~~~~~l 154 (348)
T d1iuga_ 90 YEIALEAGLVVERLDYPYGDTPRPED----VAK-------EGYAGLLLVH-SETSTGALAD---LPALARAFKEKNPEGL 154 (348)
T ss_dssp HHHHHHTTCEEEEEECCTTCCCCTTT----SCC-------SSCSEEEEES-EETTTTEECC---HHHHHHHHHHHCTTCE
T ss_pred HHHHHhcCcccccccccCCCcccccc----ccc-------cCCCeeEEEe-cchhhhhhcc---HHHHHHHHHhhhccce
Confidence 24566777677666554433334332 121 5777888855 4458999988 799999999884 78
Q ss_pred EEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHH---------HHHH----hhCCCc
Q 018243 173 LHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKAR---------RLRK----TLGGGM 238 (359)
Q Consensus 173 li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~---------~~~~----~~~~~~ 238 (359)
+++|.++++|..+ ..+..+ ++|+++.|.+|++++|.| |+++.+++.+++++ .... .....+
T Consensus 155 ~~vDavss~g~~~---i~~d~~--~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~T 229 (348)
T d1iuga_ 155 VGADMVTSLLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWT 229 (348)
T ss_dssp EEEECTTTBTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSC
T ss_pred eechhhhcccccc---cccccc--cCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCccccc
Confidence 9999987776542 333333 799999999999977888 89999888776521 1111 111222
Q ss_pred chhHHHHHHHHHHHHHhH---HHHhhhHHHHHHHHHHHHhcCCCceEecCCccce-EEEEEeccchHHHHHHHHHHHHhc
Q 018243 239 RQVGVLCAAALVALQENV---LVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETN-IVYFEITEDSKLYAACLLKKLEEH 314 (359)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 314 (359)
. +.....+...+++... .+..++.......++..++.. |+..... ..++ ...+.++. +++..++.+.|+++
T Consensus 230 p-~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~-~~s~~v~~~~~P~--g~~~~~~~~~l~~~ 304 (348)
T d1iuga_ 230 P-AINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPK-RFSPAVAAFYLPE--GVPYARVKEAFAQR 304 (348)
T ss_dssp C-CHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCS-SBCTTCEEEECCT--TCCHHHHHHHHHTT
T ss_pred c-cchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh-hhccChh-hcCCeEEEEECCC--CCCHHHHHHHHHHC
Confidence 1 1222233334443222 223333333445555555666 8887433 2333 45677764 36788999999999
Q ss_pred CceeccCC----CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 315 GVLVMPES----STRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 315 gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
||.+.++. ...+||+.....+.+|++.+++.|+++++++
T Consensus 305 gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 305 GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99986652 4579999766899999999999999999876
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.92 E-value=8.6e-24 Score=178.17 Aligned_cols=279 Identities=16% Similarity=0.125 Sum_probs=206.5
Q ss_pred HHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCCCHHH
Q 018243 42 RLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTMDIDL 120 (359)
Q Consensus 42 ~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~ 120 (359)
.||+.++++-|.+.+++++||..|+..++..++ ++||+|+++...|.+++... ......|+++.+++.. |.+.
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~~~ 75 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VPGN 75 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTH
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----chhh
Confidence 589999999999999999999999999999888 59999999999887765311 2245678888888665 8889
Q ss_pred HHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHH-HHcCcEEEEecccccchhhhcCchhHhhhcCcc
Q 018243 121 IEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIA-KKHGLKLHIDGARIFNAAVALGVPVRRLVQAAD 199 (359)
Q Consensus 121 l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~-~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d 199 (359)
+++.++ +++++|+++++.| |+..+.+ ++++++++ +++|+++|+|.+ +.. +....++..++|
T Consensus 76 ~~~~i~--------~~t~~i~~Es~~n-p~~~v~d---~~~~~~~~a~~~~~~~vVDnT--~at----p~~~~pl~~GaD 137 (331)
T d1pffa_ 76 IEKHLK--------PNTRIVYFETPAN-PTLKVID---IEDAVKQARKQKDILVIVDNT--FAS----PILTNPLDLGVD 137 (331)
T ss_dssp HHHTCC--------TTEEEEEEESSCT-TTCCCCC---HHHHHHHHTTSSSCEEEEECT--TTH----HHHCCGGGGTCS
T ss_pred Hhhhcc--------cccceeeeecccc-ccccccc---chhhhhhhhcccCceEEeecc--ccc----cccccccccCCC
Confidence 999998 8999999988777 8888776 78788775 678999999997 322 222344555899
Q ss_pred EEEEeccccCCCc---eeeEEecCHHHHHHHHHH--HHhhCCCcchhHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Q 018243 200 SASVCLSKGLGAP---VGSVIVGSKEFIKKARRL--RKTLGGGMRQVGVLCAAALVALQENVLVMLDGDHKKAKLLAEGL 274 (359)
Q Consensus 200 ~~~~s~~K~~g~~---~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 274 (359)
+++.|.+|++++- .||+++.+++...+.+.. ....|... ++..++....+++.... ++++..+++..+.+.|
T Consensus 138 iVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l--~p~~a~ll~rgl~Tl~~-Rm~~~~~nA~~lA~~L 214 (331)
T d1pffa_ 138 IVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII--SPHDAWLITRGTLTLDM-RVKRAAENAQKVAEFL 214 (331)
T ss_dssp EEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCC--CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCC--CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9999999999762 558888887766554432 22335444 66777788888888766 8999999999999999
Q ss_pred hcCCCce-EecCC---------------ccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-----------------
Q 018243 275 NQLKGLR-VDVDA---------------VETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE----------------- 321 (359)
Q Consensus 275 ~~~~g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~----------------- 321 (359)
++.|.++ +..|. ..+..+.|.+.. ...+.+|.+.|+--++.+.-|
T Consensus 215 ~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~--~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~ 292 (331)
T d1pffa_ 215 HEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG--LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGV 292 (331)
T ss_dssp HHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTS
T ss_pred hhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc--HHHHHHHHHhCCcceecccCCCCceeEeCccccccccC
Confidence 9988774 43331 346667788765 245667777664222111111
Q ss_pred ----------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 322 ----------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 322 ----------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.++.+|+++. + |+.+++++.|+++++++
T Consensus 293 ~~e~~~~~Gi~~~liRlsvG--l--E~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 293 PKEEREAAGLTDNLIRLSVG--C--ENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CHHHHHHTTCCTTEEEEECC--S--SCHHHHHHHHHHHHHTC
T ss_pred CHHHHHhcCCCcCeEEEEee--e--CCHHHHHHHHHHHHHHh
Confidence 3456999995 3 67888888888887753
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.5e-22 Score=173.74 Aligned_cols=288 Identities=17% Similarity=0.149 Sum_probs=210.2
Q ss_pred CccCC--ChHHHHHHHHHHHHhCCCCeEEcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeeccc-cccccCCccceee
Q 018243 32 DVLMH--DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENG-GISTIGGVHPRTV 108 (359)
Q Consensus 32 ~~~~~--~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v 108 (359)
..|+. .|....||+.++++-|.+.+++++||..|+ .++..++ .+||+|+++...|++.+... ......|.++..+
T Consensus 47 y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi-~~~l~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~ 124 (393)
T d1n8pa_ 47 YEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATT-ATILQSL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHH-HHHHHTS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred eeeeCCCChHHHHHHHHHHHHhCCceEEEecCchhHH-Hhhhhcc-cCCCeeeeeeeecccchhhhhhhhhcccceeEEe
Confidence 34553 788999999999999999999999997666 4556666 58999999999887775411 2244567776666
Q ss_pred ecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH----HcCcEEEEecccccchh
Q 018243 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK----KHGLKLHIDGARIFNAA 184 (359)
Q Consensus 109 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~----~~~~~li~D~a~~~~~~ 184 (359)
+. +.+++++.++ +++++|+++++.| |+..+.+ +++++++++ ++|+++|||.+ +..
T Consensus 125 ~~------~~~~~~~~i~--------~~t~lv~~EspsN-P~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT--~at- 183 (393)
T d1n8pa_ 125 ND------LLNDLPQLIK--------ENTKLVWIETPTN-PTLKVTD---IQKVADLIKKHAAGQDVILVVDNT--FLS- 183 (393)
T ss_dssp SS------HHHHHHHHSC--------SSEEEEEECSSCT-TTCCCCC---HHHHHHHHHHHTTTTTCEEEEECT--TTH-
T ss_pred ec------chHHHHHHhh--------hhcceeEecCcch-hhhhccc---hhhhhhhhhhhcccCCceEEEecC--ccC-
Confidence 42 5678999988 8999999988777 9988877 888888888 67899999998 321
Q ss_pred hhcCchhHhhhcCccEEEEeccccCCCc---eeeEEe-cCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHHHHh
Q 018243 185 VALGVPVRRLVQAADSASVCLSKGLGAP---VGSVIV-GSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVLVML 260 (359)
Q Consensus 185 ~~~~~~~~~~~~~~d~~~~s~~K~~g~~---~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (359)
+....++..++|+++.|.+|++++- .||+++ .++++.++++..+...|... ++..++....+++.+.- ++
T Consensus 184 ---P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~--~p~~a~ll~rgl~Tl~l-R~ 257 (393)
T d1n8pa_ 184 ---PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP--SPFDAWLTHRGLKTLHL-RV 257 (393)
T ss_dssp ---HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHTTHHH-HH
T ss_pred ---cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCC--ChHHHHHHHhCCcchhh-HH
Confidence 2233445558999999999999763 456665 56778888888888888877 55677777888887665 88
Q ss_pred hhHHHHHHHHHHHHhcC-CCce-EecCC-----------------ccceEEEEEeccchHHHHHHHHHHHHh--cCcee-
Q 018243 261 DGDHKKAKLLAEGLNQL-KGLR-VDVDA-----------------VETNIVYFEITEDSKLYAACLLKKLEE--HGVLV- 318 (359)
Q Consensus 261 ~~~~~~~~~l~~~l~~~-~g~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~--~gi~~- 318 (359)
++..+++..+.+.|++. |.++ +..|. ..+..+.|.+... ...+.+|.+.|+- .+.-.
T Consensus 258 ~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~-~~~~~~f~~~l~l~~~~~SlG 336 (393)
T d1n8pa_ 258 RQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-AEAASKFASSTRLFTLAESLG 336 (393)
T ss_dssp HHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCC-HHHHHHHHHhCCcceecccCC
Confidence 99999999999999764 4444 22221 2356788888752 2345667777642 22211
Q ss_pred -------ccC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 319 -------MPE-----------------SSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 319 -------~~~-----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.|. .++.||+++. + |+++++++.|++++++.
T Consensus 337 g~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG--l--E~~~DLi~Dl~~AL~~a 391 (393)
T d1n8pa_ 337 GIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG--I--EDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC--S--SCHHHHHHHHHHHHHHH
T ss_pred CcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEec--c--CCHHHHHHHHHHHHHHh
Confidence 110 2356999995 4 68888888888888764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.92 E-value=2.6e-23 Score=182.67 Aligned_cols=317 Identities=17% Similarity=0.141 Sum_probs=212.1
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCCCC--eE-EcCCchHHHHHHHHHhhhhcCCeEEecCCCcceeec
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEA--GL-FVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYE 93 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~~-~~~~gt~a~~~~l~~~~~~~g~~vl~~~~~~~~~~~ 93 (359)
+|+|+++|.+...++..-...+...++++.++++++.+. .+ ++.|||.++..++..+. .+++++++....+++...
T Consensus 29 ~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~-~~~~~vl~~~~g~~~~~~ 107 (388)
T d2ch1a1 29 SKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-EEGDRVLIAVNGIWAERA 107 (388)
T ss_dssp CHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHH
T ss_pred CHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc-cccccccccccccccccc
Confidence 499999998765444332234566899999999999863 34 44578899999999998 488898888777766543
Q ss_pred cccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEE
Q 018243 94 NGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKL 173 (359)
Q Consensus 94 ~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~l 173 (359)
...+...+...+.+...+....+.+..++...+ .+++++++.+ .+|.||...+ ++++.++|+++|+++
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~-~~t~tG~~~~---~~~i~~~~~~~~~~~ 175 (388)
T d2ch1a1 108 -VEMSERYGADVRTIEGPPDRPFSLETLARAIEL-------HQPKCLFLTH-GDSSSGLLQP---LEGVGQICHQHDCLL 175 (388)
T ss_dssp -HHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH-------HCCSEEEEES-EETTTTEECC---CTTHHHHHHHTTCEE
T ss_pred -hhhhhhhcccccccccccccccchhhhhhhhcc-------CCcceeeeee-cccccccccc---hhhhcchhcccccee
Confidence 223455676777776666666788777777664 6788888845 4558999988 688889999999999
Q ss_pred EEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHH--------------Hhh----
Q 018243 174 HIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLR--------------KTL---- 234 (359)
Q Consensus 174 i~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~--------------~~~---- 234 (359)
++|.+++++... .....+ ++|++++|.+|++++|.| |+++.++...+...... ...
T Consensus 176 ~vD~~ss~g~~p---id~~~~--~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (388)
T d2ch1a1 176 IVDAVASLCGVP---FYMDKW--EIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYD 250 (388)
T ss_dssp EEECTTTBTTBC---CCTTTT--TCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSS
T ss_pred eeeeeecccccc---cchhcc--CceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccc
Confidence 999998776543 333344 799999999999988888 88888888777643111 000
Q ss_pred --CCCcc-hhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEec--CCccc-eEEEEEeccchHHHH
Q 018243 235 --GGGMR-QVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDV--DAVET-NIVYFEITEDSKLYA 304 (359)
Q Consensus 235 --~~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~~~-~~~~~~~~~~~~~~~ 304 (359)
+.+.. ...........+++ ........+.......+...+... ++.... +...+ .++.+.++. +++.
T Consensus 251 ~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p~--g~~~ 327 (388)
T d2ch1a1 251 EPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK--GVDW 327 (388)
T ss_dssp SCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT--TCCH
T ss_pred cccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECCC--CCCH
Confidence 01111 11112222222332 222223334444445555555554 333221 11223 356677764 3678
Q ss_pred HHHHHHH-HhcCceeccC----CCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 305 ACLLKKL-EEHGVLVMPE----SSTRVRIV-VHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 305 ~~~~~~l-~~~gi~~~~~----~~~~lRi~-~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
.++.+.| .++||.+.++ ....+||+ ++...++|+|+.++++|+++++...
T Consensus 328 ~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 328 WKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp HHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 8999998 6679988765 34579999 5656789999999999999999864
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.92 E-value=8e-23 Score=180.31 Aligned_cols=333 Identities=17% Similarity=0.125 Sum_probs=209.4
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCC-ccCCChHHHHHHHHHHHHhCCC-CeEEcCCchHHHHHHHHHhhhh
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDD-VLMHDPTAFRLETEMAKVMGKE-AGLFVPSGTMGNLISVLVHCET 76 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~-~~~~~~~gt~a~~~~l~~~~~~ 76 (359)
.++|||.++. ....+|++.+++.++..... ..........+.+.+.+..+.. .+.+++||++|+..+++.+..-
T Consensus 52 ~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~ 131 (427)
T d2gsaa_ 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAY 131 (427)
T ss_dssp CEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH
T ss_pred CEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHh
Confidence 3578988762 23445999999987654432 2333455567777788876554 4578899999999999988753
Q ss_pred cC-CeEEecCC-CcceeeccccccccCCc-------------------cceeeecCCCCCCCHHHHHHHhcCCCCCccCC
Q 018243 77 RG-SEVILGDN-SHIHIYENGGISTIGGV-------------------HPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYP 135 (359)
Q Consensus 77 ~g-~~vl~~~~-~~~~~~~~~~~~~~~g~-------------------~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~ 135 (359)
.+ .+|+.... .|+.+.. + ....|- +...++. -|++.+++.+++++ .
T Consensus 132 t~r~~ii~~~~~yHG~t~~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~-----~ 198 (427)
T d2gsaa_ 132 TGRDKIIKFEGCYHGHADM--F-LVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENP-----G 198 (427)
T ss_dssp HCCCEEEEETTCCCCSCGG--G-CSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTST-----T
T ss_pred cCCCeEEEEecccccCcce--e-eeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCC-----C
Confidence 33 45554444 4443322 1 212111 1111122 38999999998643 5
Q ss_pred ceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceee
Q 018243 136 TTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGS 215 (359)
Q Consensus 136 ~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg 215 (359)
++.+|++++...+.+-..+|.+++++|+++|++||+++|+||++... ..........+.-.+|+++++....-|.|.++
T Consensus 199 ~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a 277 (427)
T d2gsaa_ 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGA 277 (427)
T ss_dssp TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTTSCCEE
T ss_pred CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCCcceee
Confidence 78899999988854334667799999999999999999999998543 22111122223336788766644333445544
Q ss_pred EEecCHHHHHHHHHHH-HhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---CCceEecCCccce
Q 018243 216 VIVGSKEFIKKARRLR-KTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL---KGLRVDVDAVETN 290 (359)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~---~g~~~~~~~~~~~ 290 (359)
+++++++.+.+.... ...++|+..+++.++++...++...+ +..++..++.++|.+.|+++ .+.........+
T Consensus 278 -~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~gg- 355 (427)
T d2gsaa_ 278 -YGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG- 355 (427)
T ss_dssp -EEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETT-
T ss_pred -eeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCC-
Confidence 667888887654321 23456677788888888888875543 24556666677777666543 132221112222
Q ss_pred EEEEEeccc-----------hHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITED-----------SKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 291 ~~~~~~~~~-----------~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.+.+.+... +......+...|.++||.+.|.+...+ .++..+|++|+|+++++++++++++
T Consensus 356 m~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~~~--~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAG--FTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCcce--eCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 222322110 011234677788899999877654332 3456899999999999999998753
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.9e-23 Score=181.93 Aligned_cols=317 Identities=15% Similarity=0.148 Sum_probs=210.1
Q ss_pred HHHHHHHHHcCCCCCCccCCChHHHHHHHHHHHHhCC----CC--eEEcCCchHHHHHHHHHhhh--hcCCeEEecCCCc
Q 018243 17 TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGK----EA--GLFVPSGTMGNLISVLVHCE--TRGSEVILGDNSH 88 (359)
Q Consensus 17 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~--~~~~~~gt~a~~~~l~~~~~--~~g~~vl~~~~~~ 88 (359)
+++|+++|.....++..-.......++++.+++.++. +. .++++|||+++..++..+.. ++||+|++....+
T Consensus 15 ~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~ 94 (382)
T d2bkwa1 15 SGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGT 94 (382)
T ss_dssp CHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSH
T ss_pred CHHHHHHhCcccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEech
Confidence 3899999876543332212234456777778888874 22 36788999999999999863 4789999988877
Q ss_pred ceeeccccccccCCccceeeec-CCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHH
Q 018243 89 IHIYENGGISTIGGVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAK 167 (359)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~ 167 (359)
++... ...++..+.....+.. +.....+.+.+++.+.+ .+++++++.+.. |.||...+ ++++.+.|+
T Consensus 95 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~-~~tg~~~~---~~~~~~~~~ 162 (382)
T d2bkwa1 95 FSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-------NSYGAVTVTHVD-TSTAVLSD---LKAISQAIK 162 (382)
T ss_dssp HHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-------SCCSEEEEESEE-TTTTEECC---HHHHHHHHH
T ss_pred hhhhh-hhhccccccccccccccCCCCccchhHHHHHhhh-------ccchheeeeecc-cccccccc---chhhhhhcc
Confidence 76543 1234556666666643 33445688888888774 678888885544 48999988 688888877
Q ss_pred Hc--CcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHHHHHHHHh-----------
Q 018243 168 KH--GLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKKARRLRKT----------- 233 (359)
Q Consensus 168 ~~--~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~~~~~~~~----------- 233 (359)
++ ++++++|.++++|..+ ..+..+ ++|++++|.+|++++|.| |+++.+++..+.+......
T Consensus 163 ~~~~~~~~~vDa~qs~g~~p---id~~~~--giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~ 237 (382)
T d2bkwa1 163 QTSPETFFVVDAVCSIGCEE---FEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLR 237 (382)
T ss_dssp HHCTTSEEEEECTTTTTTSC---CCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHH
T ss_pred ccccceeeeeeccccccccc---cccccc--CeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhh
Confidence 76 5999999998776653 333333 899999999999988888 9999999887764322111
Q ss_pred ------------hCCCcc-hhHHHHHHHHHHHH----HhHHHHhhhHHHHHHHHHHHHhcCCCceEecC---Cccc-eEE
Q 018243 234 ------------LGGGMR-QVGVLCAAALVALQ----ENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVD---AVET-NIV 292 (359)
Q Consensus 234 ------------~~~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~---~~~~-~~~ 292 (359)
.+.+.. ++.....+...+++ ...+.+.++..++++++++.+.+..++..... ...+ .++
T Consensus 238 ~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~ 317 (382)
T d2bkwa1 238 RWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLT 317 (382)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCE
T ss_pred hhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEE
Confidence 011111 11222233333443 33444556667778888888887655554321 1122 234
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccC-----CCcEEEEE-eCCCCCHHHHHHHHHHHHHHHHHHHh
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPE-----SSTRVRIV-VHHQISANDVHYTLSCFQKIYAGVCE 355 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lRi~-~~~~~~~~~i~~~~~~l~~~~~~~~~ 355 (359)
.+.++ +..++.+.|.++||.+..| +...+||+ +++..++++++++++.|+.+.+.+++
T Consensus 318 ~~~~~-----~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 318 AVYVA-----DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp EEECS-----CHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEcCC-----CHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 45554 3457888899999998765 23569999 55556678888888888776666543
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.91 E-value=1.3e-23 Score=183.91 Aligned_cols=308 Identities=10% Similarity=0.011 Sum_probs=196.9
Q ss_pred cccccCCCCCChHHHHHHHHHcCCC---C--CCccCCC----hHHHHHHHHHHHHhCC------C-CeEEcCCch-HHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEV---D--DDVLMHD----PTAFRLETEMAKVMGK------E-AGLFVPSGT-MGNL 67 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~---~--~~~~~~~----~~~~~l~~~la~~~~~------~-~~~~~~~gt-~a~~ 67 (359)
.+|+.++.+.+..|-+++.-.+... + ...|... ....+|++.|+++... + .-+++++|+ +++.
T Consensus 58 ~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~ 137 (425)
T d2hoxa1 58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIH 137 (425)
T ss_dssp CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHH
T ss_pred eeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHH
Confidence 4788888888877755544433221 2 1123322 2347899999887622 2 126666665 5666
Q ss_pred HHHHHhh-------hhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEE
Q 018243 68 ISVLVHC-------ETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140 (359)
Q Consensus 68 ~~l~~~~-------~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 140 (359)
.++.++. ..||++|+++.|+|.. |. ....+.+.+...+. +|.+.+++.++ ++++++
T Consensus 138 ~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~-Y~--~~~~~~~~~~~~~~------~D~~~~~~~~~--------~~~~ii 200 (425)
T d2hoxa1 138 GLVISLSPNMTATPDAPESKVVAHAPFYPV-FR--EQTKYFDKKGYVWA------GNAANYVNVSN--------PEQYIE 200 (425)
T ss_dssp HHHHHHSCCTTTCTTSCCEEEEECSSCCHH-HH--HHHHHSCBTTEEEE------EEGGGGTTCSC--------GGGEEE
T ss_pred HHHHHhccccccccCCCCCEEEEecCcccc-HH--HHHHHcCCCCCccC------CCHHHHHhhCC--------CCceEE
Confidence 6666663 2588999999999654 55 34666676665554 36677776666 789999
Q ss_pred EEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee--eEE-
Q 018243 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG--SVI- 217 (359)
Q Consensus 141 ~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g--g~~- 217 (359)
+++ .+|||||.+.. +..+++.+|.|++|....+ .. ... ....+++..|+||.||.++. ||+
T Consensus 201 ~l~-sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f--~~--~~~-~~~~~Ivl~S~SK~fglaGlRiGw~i 264 (425)
T d2hoxa1 201 MVT-SPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHY--TP--IKY-KADEDILLFTMSKFTGHSGSRFGWAL 264 (425)
T ss_dssp EEE-SSCTTTCCCCC----------CSSTTCEEEEECTTCSTTT--SC--CCS-CBCCSEEEEEHHHHTSCGGGCCEEEE
T ss_pred EEE-CCCCCCcchhh----------hhhhCCEEEEeccccCccc--cc--hhh-hcCCeEEEEeCHHhccCcchheeeEE
Confidence 884 45669998743 1235899999999632111 11 111 12345777799999997655 875
Q ss_pred ecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHH--------------HhHHHHhhhHHHHHHHHHHHHhcCCCceEe
Q 018243 218 VGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQ--------------ENVLVMLDGDHKKAKLLAEGLNQLKGLRVD 283 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 283 (359)
+.++.+.+.+.........+.+...+ .++..+++ +..+..++++.++.+++.+.|++.+.+.+.
T Consensus 265 ~~~~~i~~~~~~~~~~~~~~vs~~~Q--~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~ 342 (425)
T d2hoxa1 265 IKDESVYNNLLNYMTKNTEGTPRETQ--LRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQ 342 (425)
T ss_dssp ECCHHHHHHHHHHHHHHTSSCCHHHH--HHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECC
T ss_pred eCCHHHHHHHHHhhccCcccCCHHHH--HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceee
Confidence 45778888887777666555543333 33333332 223334556677788888999887443321
Q ss_pred c-------------CCccceEEEEEeccchHHHHHHHHHHHHhcCceeccC-----CCcEEEEEeCCCCCHHHHHHHHHH
Q 018243 284 V-------------DAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPE-----SSTRVRIVVHHQISANDVHYTLSC 345 (359)
Q Consensus 284 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~-----~~~~lRi~~~~~~~~~~i~~~~~~ 345 (359)
. .+..+.+.|+++... +.+.+.+.|.++||.+.|+ +++++||++ ..+++++++++++
T Consensus 343 ~~p~~~~~~f~~~~~~~~~~f~wl~~~~~---~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl--~~~~e~ld~~l~r 417 (425)
T d2hoxa1 343 ELPQSEYCNYFRRMRPPSPSYAWVKCEWE---EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYY 417 (425)
T ss_dssp CCCSCEEETTTTEEECCCCSEEEEEECSG---GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHH
T ss_pred ccCCccceeeeeeccCCCcceeeeeCCCC---hHHHHHHHHHhCCEEEEechhcCCCCCEEEEEe--cCCHHHHHHHHHH
Confidence 1 123456788887652 3334455669999999765 457899999 5789999999999
Q ss_pred HHHHHHH
Q 018243 346 FQKIYAG 352 (359)
Q Consensus 346 l~~~~~~ 352 (359)
|++++++
T Consensus 418 L~~~v~a 424 (425)
T d2hoxa1 418 LKDMVKA 424 (425)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9998863
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=7e-23 Score=180.82 Aligned_cols=339 Identities=15% Similarity=0.163 Sum_probs=212.8
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCCc----cCCChHHHHHHHHHHHHhCCC---CeEEcCCchHHHHHHHH
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDDV----LMHDPTAFRLETEMAKVMGKE---AGLFVPSGTMGNLISVL 71 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~---~~~~~~~gt~a~~~~l~ 71 (359)
.++|||.++ +....+|++.+++.+....... ....+...++.+.+.+.+... ...+++||++|+..+++
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk 119 (425)
T d1sffa_ 40 REYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 119 (425)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHH
Confidence 357888886 3344569999999886544221 122566778888899988643 45788999999999999
Q ss_pred HhhhhcC-CeEEecCC-CcceeeccccccccCCcc-------------ceeeecC--CCCCCC---HHHHHHHhcCCCCC
Q 018243 72 VHCETRG-SEVILGDN-SHIHIYENGGISTIGGVH-------------PRTVKNN--QDGTMD---IDLIEAAIRDPKGE 131 (359)
Q Consensus 72 ~~~~~~g-~~vl~~~~-~~~~~~~~~~~~~~~g~~-------------~~~v~~~--~~~~~~---~~~l~~~l~~~~~~ 131 (359)
.+....+ .+|+.... .|..+.. + ....|.. ....+.+ ...... ....++.+...
T Consensus 120 ~ar~~t~r~~ii~~~~~yHG~t~~--~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (425)
T d1sffa_ 120 IARAATKRSGTIAFSGAYHGRTHY--T-LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKND--- 193 (425)
T ss_dssp HHHHHHTCCEEEEETTCCCCSSHH--H-HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHT---
T ss_pred HhhhhhcccceEeecCCCcCcccc--c-hhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhc---
Confidence 8876444 34565444 4443321 1 1111110 0111111 011100 11111111110
Q ss_pred ccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCC-
Q 018243 132 IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLG- 210 (359)
Q Consensus 132 ~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g- 210 (359)
....++.+|++++...+.+-..++.+++++|+++|++||+++|+||++..............+.-.+|+++++ |.+|
T Consensus 194 ~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~g 271 (425)
T d1sffa_ 194 AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAG 271 (425)
T ss_dssp CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGT
T ss_pred ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCC
Confidence 1115789999999888543346778999999999999999999999986422222222222333367776655 6664
Q ss_pred -CceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHh----cCCCceEec
Q 018243 211 -APVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLN----QLKGLRVDV 284 (359)
Q Consensus 211 -~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~----~~~g~~~~~ 284 (359)
.|. |.+++++++.+.+.. ...+.|+...++.++++...|+...+ +..++..+..+++.+.|+ +.|.+.-.
T Consensus 272 G~P~-~av~~~~~i~~~~~~--~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v- 347 (425)
T d1sffa_ 272 GFPL-AGVTGRAEVMDAVAP--GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDV- 347 (425)
T ss_dssp SSCC-EEEEEEHHHHTTSCT--TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE-
T ss_pred Ccce-EEEEEcHHHHHhhCC--CCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEE-
Confidence 343 556788888776532 24567777788899999998876554 344555555556655544 44332222
Q ss_pred CCccceEEEEEeccc------hHHHHHHHHHHHHhcCceeccCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 285 DAVETNIVYFEITED------SKLYAACLLKKLEEHGVLVMPES--STRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
...+.++.+.+..+ +......+.++|.++|+.+.+.+ .+.+|++++..++++|++++++++++++++++
T Consensus 348 -rg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 348 -RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp -EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred -EccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 23556666665321 12345678889999999987654 46799999989999999999999999999875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=9.2e-22 Score=173.15 Aligned_cols=337 Identities=16% Similarity=0.078 Sum_probs=216.9
Q ss_pred cccccccCCC----CCChHHHHHHHHHcCCCCCC--c--cCCChHHHHHHHHHHHHhCCC--CeEEcCCchHHHHHHHHH
Q 018243 3 TRTVDLRSDT----VTKPTEAMRAAMASAEVDDD--V--LMHDPTAFRLETEMAKVMGKE--AGLFVPSGTMGNLISVLV 72 (359)
Q Consensus 3 ~~~id~~~~~----~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~l~~ 72 (359)
.++|||.++. ....+|++.+++.+...... . ....+...++.+.+.+..+.. ...+++||++|+..++..
T Consensus 43 ~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ 122 (429)
T d1s0aa_ 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKM 122 (429)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHH
T ss_pred CEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhh
Confidence 3578998862 23345999999887443211 1 112455566777777776443 457899999999999988
Q ss_pred hhh------hcCCeEEecCCCcceeeccccccccCCc-------------cceeeecCC---CC---CCCHHHHHHHhcC
Q 018243 73 HCE------TRGSEVILGDNSHIHIYENGGISTIGGV-------------HPRTVKNNQ---DG---TMDIDLIEAAIRD 127 (359)
Q Consensus 73 ~~~------~~g~~vl~~~~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~---~~---~~~~~~l~~~l~~ 127 (359)
+.. ....+|+....+|..... + .....+. .....+... .. .-+.+.+++.+.+
T Consensus 123 ar~~~~~~g~~~~~ii~~~~~yHG~t~-~-a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (429)
T d1s0aa_ 123 ALQYWQAKGEARQRFLTFRNGYHGDTF-G-AMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA 200 (429)
T ss_dssp HHHHHHHHTCCCCEEEEETTCCCCSSH-H-HHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH
T ss_pred hhheeecccccccEEEEecCCccccch-h-hhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhh
Confidence 753 123456665555443321 0 1111110 011111110 01 1245555555543
Q ss_pred CCCCccCCceeEEEEeccccCCCce-ecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEecc
Q 018243 128 PKGEIVYPTTRLICLENTHANCGGR-CLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLS 206 (359)
Q Consensus 128 ~~~~~~~~~~~~v~i~~~~~~ptG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~ 206 (359)
.. .++.+|++++...+.+|. .+|.+++++|+++|++||+++|+||++..............+...+|+++++
T Consensus 201 ~~-----~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g-- 273 (429)
T d1s0aa_ 201 HR-----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG-- 273 (429)
T ss_dssp HT-----TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--
T ss_pred cC-----CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--
Confidence 21 679999999887545555 5688999999999999999999999986433332222222333356776555
Q ss_pred ccCCCc--eeeEEecCHHHHHHHHHHHH---hhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHHhcC---
Q 018243 207 KGLGAP--VGSVIVGSKEFIKKARRLRK---TLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGLNQL--- 277 (359)
Q Consensus 207 K~~g~~--~gg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~--- 277 (359)
|.++++ ..+.+++++++.+.+..-.. ..+.++..+++.++++...++...+ +..++..+..++|++.|+++
T Consensus 274 K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~ 353 (429)
T d1s0aa_ 274 KALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353 (429)
T ss_dssp GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred cccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhccC
Confidence 766332 23668889888887643211 2356666778888888888876543 35666777788888888664
Q ss_pred CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 278 KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 278 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.+.-. ...+.+..+.+..+ .....+.+.|.++|+.+.+.+ +.+|++++..++++|+++++++|++++++.
T Consensus 354 ~~v~~v--rg~Gl~~~~e~~~~--~~~~~~~~~~~~~Gl~~~~~g-~~i~~~Ppl~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 354 EMVADV--RVLGAIGVVETTHP--VNMAALQKFFVEQGVWIRPFG-KLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TTEEEE--EEETTEEEEEESSC--BCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred CceEEE--eecccEEEEEecCc--ccHHHHHHHHHHCCcEEEecC-CEEEEeCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 333211 23566666777653 356788999999999997765 689999988999999999999999998764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.90 E-value=5.6e-21 Score=168.96 Aligned_cols=340 Identities=16% Similarity=0.124 Sum_probs=205.2
Q ss_pred cccccccCC----CCCChHHHHHHHHHcCCCCCC-c--cCCChHHHHHHHHHHHHh--CCCCeEEcCCchHHHHHHHHHh
Q 018243 3 TRTVDLRSD----TVTKPTEAMRAAMASAEVDDD-V--LMHDPTAFRLETEMAKVM--GKEAGLFVPSGTMGNLISVLVH 73 (359)
Q Consensus 3 ~~~id~~~~----~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~l~~~la~~~--~~~~~~~~~~gt~a~~~~l~~~ 73 (359)
.++|||.++ +....+|++.+++.+...... . ...++...++.+++++.. +.+.+.+++||++|+..|++.+
T Consensus 41 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~A 120 (431)
T d1zoda1 41 RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA 120 (431)
T ss_dssp CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHH
Confidence 357898875 333445888888877543211 1 113566677888888877 4566789999999999999988
Q ss_pred hhhcC-CeEEecCCCcceeeccccccccCC-----------ccceeeecCCCC---------CCC---HHHHHHHhcCCC
Q 018243 74 CETRG-SEVILGDNSHIHIYENGGISTIGG-----------VHPRTVKNNQDG---------TMD---IDLIEAAIRDPK 129 (359)
Q Consensus 74 ~~~~g-~~vl~~~~~~~~~~~~~~~~~~~g-----------~~~~~v~~~~~~---------~~~---~~~l~~~l~~~~ 129 (359)
....+ ++|+....+|..... +. ....+ .....++..... ..+ .+.+...+..
T Consensus 121 r~~t~r~~i~~~~~~yHG~t~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 196 (431)
T d1zoda1 121 KLVTGKYEIVGFAQSWHGMTG-AA-ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-- 196 (431)
T ss_dssp HHHHTCCEEEEETTCCCCSSH-HH-HHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH--
T ss_pred HHhcCCcceeecccccccccc-hh-hcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHH--
Confidence 65444 345544444333221 11 11111 011112111110 011 2333333221
Q ss_pred CCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccC
Q 018243 130 GEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGL 209 (359)
Q Consensus 130 ~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 209 (359)
....++.+|++++...+.+-..+|.+++++|+++|++||+++|+||++..............+.-.+|+++++ |.+
T Consensus 197 --~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l 272 (431)
T d1zoda1 197 --QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTL 272 (431)
T ss_dssp --HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHH
T ss_pred --hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccc--ccc
Confidence 1115799999999988644446788999999999999999999999986322221222222333467877665 555
Q ss_pred --CCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhHH-HHhhhHHHHHHHHHHHH----hcCCCceE
Q 018243 210 --GAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVALQENVL-VMLDGDHKKAKLLAEGL----NQLKGLRV 282 (359)
Q Consensus 210 --g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~~l----~~~~g~~~ 282 (359)
|.|.++ +++.++..+.........+.++...++.++++...++...+ ...++..+..+++.+.+ ++.|-+.-
T Consensus 273 ~gG~p~~a-v~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~ 351 (431)
T d1zoda1 273 GAGLPLAA-IVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD 351 (431)
T ss_dssp HTTSSCEE-EEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred ccccccce-eeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEE
Confidence 445555 55666666665433334566677778888888877754333 23344444444444444 44432221
Q ss_pred ecCCccceEEEEEeccc------hHHHHHHHHHHHHhcCcee----ccCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 283 DVDAVETNIVYFEITED------SKLYAACLLKKLEEHGVLV----MPESSTRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~gi~~----~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
. ...+.++.+.+..+ .......+.+.+.++|+.. .+...+.+|++++..++++++++++++|++++++
T Consensus 352 -v-rG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 352 -V-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp -E-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -E-eecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 23455555544210 1124567888899999753 4556778999999999999999999999999987
Q ss_pred H
Q 018243 353 V 353 (359)
Q Consensus 353 ~ 353 (359)
+
T Consensus 430 v 430 (431)
T d1zoda1 430 A 430 (431)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.88 E-value=1.9e-21 Score=172.90 Aligned_cols=332 Identities=15% Similarity=0.101 Sum_probs=200.7
Q ss_pred ccccccCC----CCCChHHHHHHHHHcCCCC-----CCccCC---ChHHHHHHHHHHHHhCC--CCeEEcCCchHHHHHH
Q 018243 4 RTVDLRSD----TVTKPTEAMRAAMASAEVD-----DDVLMH---DPTAFRLETEMAKVMGK--EAGLFVPSGTMGNLIS 69 (359)
Q Consensus 4 ~~id~~~~----~~~~~~~~~~~a~~~~~~~-----~~~~~~---~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~ 69 (359)
++|||.++ +....+|++.+++.+.... ...+.. .....+|.+.+.+..+. +..++++||++|+..|
T Consensus 54 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~A 133 (461)
T d1ohwa_ 54 RMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENA 133 (461)
T ss_dssp EEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHH
T ss_pred EEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHH
Confidence 57888765 3455569999999875432 111111 12234455555444433 3468999999999999
Q ss_pred HHHhhh---------------------------hcCCeEEecCC-CcceeeccccccccCCccc-----------eeeec
Q 018243 70 VLVHCE---------------------------TRGSEVILGDN-SHIHIYENGGISTIGGVHP-----------RTVKN 110 (359)
Q Consensus 70 l~~~~~---------------------------~~g~~vl~~~~-~~~~~~~~~~~~~~~g~~~-----------~~v~~ 110 (359)
++.+.. .+..+|+.... .|+.+.. .....|-.. ...+.
T Consensus 134 ik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~---a~s~tg~~~~~~~~~~~~~~~~~~~ 210 (461)
T d1ohwa_ 134 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG---CLATTHSKAIHKIDIPSFDWPIAPF 210 (461)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH---HHHTCCSCHHHHTTCCCCCCCEECC
T ss_pred HHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcc---cccccCCcccccccccccCCccccc
Confidence 998742 11235665444 4444332 122222110 00110
Q ss_pred CC-CC-------------CCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEe
Q 018243 111 NQ-DG-------------TMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID 176 (359)
Q Consensus 111 ~~-~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D 176 (359)
.. .+ ..+.+++++.+.... .+..++.+|++++...+.+...+|.+++++|+++|++||+++|+|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~D 288 (461)
T d1ohwa_ 211 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYR--KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVD 288 (461)
T ss_dssp CCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHH--HTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccccccchhhhhhHHHHHHHHHHHH--hCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecc
Confidence 00 00 012344555443110 011578999999988854445677899999999999999999999
Q ss_pred cccccchhhhcCch--hHhhh--cCccEEEEeccccCCCceeeEEecCHHHHHHHHHHHHhhCCCcchhHHHHHHHHHHH
Q 018243 177 GARIFNAAVALGVP--VRRLV--QAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQVGVLCAAALVAL 252 (359)
Q Consensus 177 ~a~~~~~~~~~~~~--~~~~~--~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (359)
|++...... |.. ...+. ..+|++ +++|.+++ |+ ......+... .....+.++..++..++++...+
T Consensus 289 EV~tG~gRt--G~~~~~e~~gi~~~PDiv--~~gK~l~~--g~-~~~~~~~~~~---~~~~~~~T~~g~p~~~aaa~a~l 358 (461)
T d1ohwa_ 289 EVQTGGGST--GKFWAHEHWGLDDPADVM--TFSKKMMT--GG-FFHKEEFRPN---APYRIFNTWLGDPSKNLLLAEVI 358 (461)
T ss_dssp CTTTCSSTT--SSSSGGGGGCCSSCCSEE--EECGGGSS--EE-EEECGGGSCS---STTSSCCSCSSCHHHHHHHHHHH
T ss_pred ccccccccc--cccccccccccccCchhh--hhhhcccc--cc-cccccccccc---cccccccccccccccchhhcccc
Confidence 998543322 321 11121 136766 55587653 22 2222221111 11234555666778888888888
Q ss_pred HHhHH-HHhhhHHHHHHHHHHHHhcC----CCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCceeccCCCcEEE
Q 018243 253 QENVL-VMLDGDHKKAKLLAEGLNQL----KGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLVMPESSTRVR 327 (359)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~lR 327 (359)
+...+ +..++..++.++|.+.|+++ |.+--.. ...+.++.+.++.+ ....++.+.+.++|+.+.+.+...||
T Consensus 359 ~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v-rG~Gl~~~ie~~~~--~~~~~i~~~~~~~Gll~~~~~~~~ir 435 (461)
T d1ohwa_ 359 NIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPDE--SIRNKLISIARNKGVMLGGCGDKSIR 435 (461)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSSH--HHHHHHHHHHHHTTEECEEETTTEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEe-eeeeEEEEEEcCCH--HHHHHHHHHHHHCCeEEeeCCCCEEE
Confidence 65543 24455666666777776653 3321111 23566777887663 46678999999999999888888999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 328 IVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 328 i~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
+.++..+++++++.++++|+++++++
T Consensus 436 ~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 436 FRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998764
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.81 E-value=1.6e-19 Score=156.50 Aligned_cols=323 Identities=11% Similarity=0.080 Sum_probs=188.9
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCC------------ccCCChHHHHHHHHHHHHhCCCCe---EEcCCchHHHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDD------------VLMHDPTAFRLETEMAKVMGKEAG---LFVPSGTMGNL 67 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~---~~~~~gt~a~~ 67 (359)
-+.++|..+... .+++|+++|.+...+.. .....+...+.++.++++++.+.. ++++++++++.
T Consensus 2 ~~~~~F~pGP~~-vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 2 ERAYNFNAGPAA-LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCCEECCSSSCC-CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCCcccCCCCcC-CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHH
Confidence 345667553332 24899999988653311 011124557889999999999753 55555555555
Q ss_pred HHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 68 ISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 68 ~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.++...+..+++++++....++.... ..++...|..+..+..+....++++.+++.+.. . ..+.+.
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~---- 146 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKA-LKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQ--------D-NAAYLH---- 146 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCC--------T-TEEEEE----
T ss_pred HHHHhccccCCCceEEEeechhhhhh-hhhhhhcCceeeeeccccccccchhhhhhhccc--------C-cceEEE----
Confidence 55554444577777755544443322 244667787777777666666777777766663 2 233332
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~ 226 (359)
|.||...+ +.++.++|+++|+++++|.+++++... .... ..|+...+.+|.++.|.+ ++++..+...+.
T Consensus 147 ~~tg~~~~---~~~i~~~~~~~~al~~vDavss~g~~~---id~~----~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~ 216 (361)
T d2c0ra1 147 LTSNETIE---GAQFKAFPDTGSVPLIGDMSSDILSRP---FDLN----QFGLVYAGAQKNLGPSGVTVVIVREDLVAES 216 (361)
T ss_dssp EESEETTT---TEECSSCCCCTTSCEEEECTTTTTSSC---CCGG----GCSEEEEETTTTTCCSSCEEEEEEGGGSSSC
T ss_pred Eeccccee---cceEEEeeccCCceEEEEeeccccccc---cccc----cceeEEEecccccccccCcEEEEEhHHhhhC
Confidence 24677776 566778999999999999998775543 2222 356777788999987766 433333221111
Q ss_pred ---------HHHHHHhh-CCCcchhHHHHHHHH-HHH---HHhHHHHhhhHHHHHHHHHHHHhcCCCc-eEecC-Cccc-
Q 018243 227 ---------ARRLRKTL-GGGMRQVGVLCAAAL-VAL---QENVLVMLDGDHKKAKLLAEGLNQLKGL-RVDVD-AVET- 289 (359)
Q Consensus 227 ---------~~~~~~~~-~~~~~~~~~~~~~~~-~~l---~~~~~~~~~~~~~~~~~l~~~l~~~~g~-~~~~~-~~~~- 289 (359)
+....... ............... ..+ .........+..+.+..+.......... ..... ...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~ 296 (361)
T d2c0ra1 217 PKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSD 296 (361)
T ss_dssp CTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCS
T ss_pred ccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccc
Confidence 11111111 111111111111111 111 2222224444555555555555554222 22211 1223
Q ss_pred eEEEEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 290 NIVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
..+.+.++. +.+..++.+.|.++||.+..+.+ +.+||++...++.||+++++++|++..++
T Consensus 297 ~~~~~~~~~--~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 297 MNITFRLAS--EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SEEEEECSC--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC--cccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 335566654 46888999999999999877632 35999999899999999999999876554
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.4e-19 Score=156.99 Aligned_cols=324 Identities=11% Similarity=-0.019 Sum_probs=187.0
Q ss_pred cccccCCCCCChHHHHHHHHHcCCCCCCccC--------C----ChHHHHHHHHHHHHhCCCC--e-EEcCCchHHHHHH
Q 018243 5 TVDLRSDTVTKPTEAMRAAMASAEVDDDVLM--------H----DPTAFRLETEMAKVMGKEA--G-LFVPSGTMGNLIS 69 (359)
Q Consensus 5 ~id~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~----~~~~~~l~~~la~~~~~~~--~-~~~~~gt~a~~~~ 69 (359)
+++|..+.... +++|+++|.+...+....+ . .+...+.++.++++++.+. . ++++++++++..+
T Consensus 2 ~~nF~pGP~~~-p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 2 IFNFSSGPAML-PAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CEECCSSSCCC-CHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eEEeCCCCcCC-CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence 56775543333 4999999998654321110 1 2345788999999999975 3 5555655655555
Q ss_pred HHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCC
Q 018243 70 VLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANC 149 (359)
Q Consensus 70 l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~p 149 (359)
.......+++.+++....++.... ...++..+...+.+....+...+.+.++..+. .+++++++.+.+ |.
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~v~~~~-~~ 150 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASA-IKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ--------LSDNAAYMHYCP-NE 150 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHH-HHHHTTTSEEEEEECEEEETTEEEECCGGGCC--------CCSSCSCEEECS-EE
T ss_pred hhhcccccccccceecccchhhhh-HHHHhhcCccceeeccccCCCcchhhhhhhhc--------cCCceeEEEecc-cc
Confidence 555554577777776665544332 12355566555555444444455555555555 566666664443 46
Q ss_pred CceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCcee-eEEecCHHHHHH--
Q 018243 150 GGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVG-SVIVGSKEFIKK-- 226 (359)
Q Consensus 150 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~g-g~~~~~~~~~~~-- 226 (359)
||...+.. .+ .++.+++++++|.+++++... +.. ...|++..|.+|++++|.| ++++..+...+.
T Consensus 151 t~~~~~~~---~i--~~~~~~~~v~vDa~~~~~~~~-----vd~--~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~ 218 (360)
T d1bjna_ 151 TIDGIAID---ET--PDFGADVVVAADFSSTILSRP-----IDV--SRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANI 218 (360)
T ss_dssp TTTTEECC---CC--CCCCTTCCEEEECTTTTTSSC-----CCG--GGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCT
T ss_pred cccCcccc---ce--ecccccceeeeeeecccccee-----eee--ccceeEEEEcccccccCCCceeEeeehhhhhccc
Confidence 77766542 22 346789999999986543332 222 2678999999999988766 444443321111
Q ss_pred -------HH-HHHHhhCCCcchhHHHHHHHHHHH----HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCC-c-cceEE
Q 018243 227 -------AR-RLRKTLGGGMRQVGVLCAAALVAL----QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDA-V-ETNIV 292 (359)
Q Consensus 227 -------~~-~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~-~~~~~ 292 (359)
.. ..................+....+ ....+...++..+.+..+.+.+...........+ . ....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~ 298 (360)
T d1bjna_ 219 ACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNV 298 (360)
T ss_dssp TSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEE
T ss_pred cCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEE
Confidence 01 111111111111222222222111 1223323344445555666666665333322211 1 23346
Q ss_pred EEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 018243 293 YFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAGV 353 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (359)
.|.+++ +.+...+.+.|.++||.+..+.+ +.+|+++...+++|||++++++|+++.++.
T Consensus 299 ~f~~~~--~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 299 PFQLAD--SALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp EEEESS--GGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC--cccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 677765 35788999999999999877632 349999998999999999999999866543
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.78 E-value=2.9e-18 Score=148.53 Aligned_cols=324 Identities=9% Similarity=0.041 Sum_probs=176.9
Q ss_pred cccccccCCCCCChHHHHHHHHHcCCCCCCc-----cC-------CChHHHHHHHHHHHHhCCCC--eEEcCCchH-HHH
Q 018243 3 TRTVDLRSDTVTKPTEAMRAAMASAEVDDDV-----LM-------HDPTAFRLETEMAKVMGKEA--GLFVPSGTM-GNL 67 (359)
Q Consensus 3 ~~~id~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~-------~~~~~~~l~~~la~~~~~~~--~~~~~~gt~-a~~ 67 (359)
+++++|..+....| ++|+++|.+...+... .. ......+.++.++++++.+. .+++++|+. ++.
T Consensus 2 ~~~~nF~pGP~~~p-~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 2 KQVFNFNAGPSALP-KPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCEECCSSSCCCC-HHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CceeEeCCCCcCCC-HHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence 45677887666554 9999999885533111 11 12345788999999999975 356655554 444
Q ss_pred HHHHHhhhhcCCeEEecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEecccc
Q 018243 68 ISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHA 147 (359)
Q Consensus 68 ~~l~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~ 147 (359)
.+.......+++.+++....+++... ...+...+...+............+.++.... ....+.+++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--- 147 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLGETHIAASTKANSYQSIPDFSEFQL---------NENDAYLHI--- 147 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTSEEEEEEECGGGTSCSCCCGGGCCC---------CTTEEEEEE---
T ss_pred HHHHhhhcccCcccceeeccchhhhh-HHHHHHhhhcceeeccccccccchhhhhhccc---------ccccceeEe---
Confidence 44444444567777766555444322 12344455444444332222223333333333 222333322
Q ss_pred CCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCceeeEEecCHHHHHH-
Q 018243 148 NCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKK- 226 (359)
Q Consensus 148 ~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~gg~~~~~~~~~~~- 226 (359)
.||...| +.+|.++|+++|+++++|.+++++... ..+..+ ++|+.+++.+|++++ .+++++.++...+.
T Consensus 148 -~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~~---id~~~~--~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~ 217 (360)
T d1w23a_ 148 -TSNNTIY---GTQYQNFPEINHAPLIADMSSDILSRP---LKVNQF--GMIYAGAQKNLGPSG-VTVVIVKKDLLNTKV 217 (360)
T ss_dssp -ESEETTT---TEECSSCCCCCSSCEEEECTTTTTSSC---CCGGGC--SEEEEETTTTTSCTT-CEEEEEEHHHHCSCC
T ss_pred -cCCcccc---ceeeeeccccceeeEEeeccccccccc---cccccc--cceEEeeccccccCC-cceeeEechhhhccc
Confidence 4678777 677788999999999999998776543 333333 556555555554332 23444433322111
Q ss_pred ---------HHHHHH-hhCCCcchhHHHHHH-H-HHHHHHh-HHHHhhhHHHHHHHHHHHHhcCCCce-Eec-CCccc-e
Q 018243 227 ---------ARRLRK-TLGGGMRQVGVLCAA-A-LVALQEN-VLVMLDGDHKKAKLLAEGLNQLKGLR-VDV-DAVET-N 290 (359)
Q Consensus 227 ---------~~~~~~-~~~~~~~~~~~~~~~-~-~~~l~~~-~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~-~~~~~-~ 290 (359)
...... ....+.......... . ...++.. .....++.......+........... ... ++..+ .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~ 297 (360)
T d1w23a_ 218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM 297 (360)
T ss_dssp TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS
T ss_pred ccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhccee
Confidence 011111 111111111111111 1 1111211 12122333344444444444432332 211 22223 3
Q ss_pred EEEEEeccchHHHHHHHHHHHHhcCceeccCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 018243 291 IVYFEITEDSKLYAACLLKKLEEHGVLVMPESS--TRVRIVVHHQISANDVHYTLSCFQKIYAG 352 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~--~~lRi~~~~~~~~~~i~~~~~~l~~~~~~ 352 (359)
.+.|++++ +.+..++.+.|.++||.+..|.. +.+|+++...++.|+++.+++.|++..++
T Consensus 298 vvsf~i~~--~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 298 NVTFNLRN--EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEEEECSS--HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 56777764 46778999999999999866532 35999998788999999999999988765
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=3.9e-16 Score=135.17 Aligned_cols=283 Identities=16% Similarity=0.089 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhh-hcCCeEEecCCCcceeeccc-cccccCCccceeeecCCCCCC
Q 018243 40 AFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCE-TRGSEVILGDNSHIHIYENG-GISTIGGVHPRTVKNNQDGTM 116 (359)
Q Consensus 40 ~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~-~~g~~vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~ 116 (359)
.-++++.++++.|.+.+ .-...|++|...++..+.. ...++++++...|...+... +.++..|++++.++.++.+.
T Consensus 110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~- 188 (437)
T d1wyua1 110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT- 188 (437)
T ss_dssp HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC-
T ss_pred HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc-
Confidence 46788899999999975 4555677766666665543 35667899998887654310 23556799999887654432
Q ss_pred CHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHHHHHHHHcCcEEEEecccccchhhhcCchhHhhhc
Q 018243 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQ 196 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 196 (359)
+.++ ++ +++.+|++.+|. -.|.+ ++++++.+++++.|.++++|..- .... .-.+..++
T Consensus 189 ~~~~----~~--------~~~Aavmi~~Pn--t~G~~---ed~~~i~~~~h~~G~l~~~~ad~--~al~-~l~~Pg~~-- 246 (437)
T d1wyua1 189 PLPE----VG--------EEVGAVVVQNPN--FLGAL---EDLGPFAEAAHGAGALFVAVADP--LSLG-VLKPPGAY-- 246 (437)
T ss_dssp CCCC----CC--------TTEEEEEEESSC--TTSBC---CCHHHHHHHHHHTTCEEEEECCT--TGGG-TBCCHHHH--
T ss_pred hhhh----hc--------cceeEEEEcccc--ccccc---cchHHHHHHhhhccceEEeeech--hhhh-cccccccc--
Confidence 2221 34 689999995554 35776 35899999999999988877542 1111 11234444
Q ss_pred CccEEEEeccccCCCc------eeeEEecCHHHHHHH----------------------------HHHHHhhCCCcchhH
Q 018243 197 AADSASVCLSKGLGAP------VGSVIVGSKEFIKKA----------------------------RRLRKTLGGGMRQVG 242 (359)
Q Consensus 197 ~~d~~~~s~~K~~g~~------~gg~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~ 242 (359)
++|++..+ +|.||.| .+|++.+++++...+ ++.+.....++.+..
T Consensus 247 GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l 325 (437)
T d1wyua1 247 GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQL 325 (437)
T ss_dssp TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHH
T ss_pred ccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHH
Confidence 89999887 6666543 447888887765442 111111222222222
Q ss_pred HH-HHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEEeccchHHHHHHHHHHHHhcCcee-
Q 018243 243 VL-CAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEEHGVLV- 318 (359)
Q Consensus 243 ~~-~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~- 318 (359)
.. .+.....+ .+++++..++...+++++++.|.+++|++...+.....-+.+.++. +..++.++|.++|+..
T Consensus 326 ~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~----~~~~i~k~L~d~G~~~~ 401 (437)
T d1wyua1 326 TALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK----DPEAVRRALAERGFHGA 401 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS----CHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC----CHHHHHHHHHhCCCCCC
Confidence 22 22222222 4556667778889999999999998898864333223334555554 6789999999999974
Q ss_pred ---cc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 018243 319 ---MP-ESSTRVRIVVHHQISANDVHYTLSCFQKIY 350 (359)
Q Consensus 319 ---~~-~~~~~lRi~~~~~~~~~~i~~~~~~l~~~~ 350 (359)
.+ ...+.+.++++...+++++|+++++|++++
T Consensus 402 ~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 402 TPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 22 245789999999999999999999998864
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=2.4e-14 Score=125.52 Aligned_cols=316 Identities=17% Similarity=0.156 Sum_probs=198.7
Q ss_pred HHHHHHHHcCCCCCCccCC---ChH----HHHHHHHHHHHhCCCCe-EEcCCchHHHHHHHHHhhh---hcC----CeEE
Q 018243 18 EAMRAAMASAEVDDDVLMH---DPT----AFRLETEMAKVMGKEAG-LFVPSGTMGNLISVLVHCE---TRG----SEVI 82 (359)
Q Consensus 18 ~~~~~a~~~~~~~~~~~~~---~~~----~~~l~~~la~~~~~~~~-~~~~~gt~a~~~~l~~~~~---~~g----~~vl 82 (359)
|.+.+.+.+..+....|.+ +++ .-+++..|+++.|.+.+ .-...|.+|...++..+.. +++ ..++
T Consensus 79 P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~ 158 (471)
T d1wyub1 79 PKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVV 158 (471)
T ss_dssp CHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEE
T ss_pred cchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 6666666654333344553 444 36788889999999964 3334455544444433321 122 2344
Q ss_pred ecCCCcceeeccccccccCCccceeeecCCCCCCCHHHHHHHhcCCCCCccCCceeEEEEeccccCCCceecChhhHHHH
Q 018243 83 LGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSV 162 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v~i~~~~~~ptG~~~~~~~l~~i 162 (359)
+..+.|..... ......+..++.++.+..+..+.+.+..... .++.++++.+++. .|..- ++.+++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~v~v~~p~~--~g~~e--~~~~~~ 224 (471)
T d1wyub1 159 LVPDSAHGSNP--ATASMAGYQVREIPSGPEGEVDLEALKRELG--------PHVAALMLTNPNT--LGLFE--RRILEI 224 (471)
T ss_dssp EEETTSCTHHH--HHHHHTTCEEEEECBCTTSSBCHHHHHHHCS--------TTEEEEEECSSCT--TSCCC--TTHHHH
T ss_pred cCCccccccee--eeeecccceeecccccccccccchhhhhhhh--------ccccceeeccCCC--ccccc--chhhhh
Confidence 55555544444 2355566677777777788889999998877 6788888845443 45553 358899
Q ss_pred HHHHHHcCcEEEEecccccchhhhcCchhHhhhcCccEEEEeccccCCCc------eeeEEecCHHHHHHHHH-------
Q 018243 163 GEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAP------VGSVIVGSKEFIKKARR------- 229 (359)
Q Consensus 163 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~~g~~------~gg~~~~~~~~~~~~~~------- 229 (359)
.+++++.|..+++|.+... ... .-..... .+.|.++.+.++.||.| ..|++..++++..++..
T Consensus 225 ~~~~h~~g~~~~~~~~~~~-~~~-~l~~p~~--~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~ 300 (471)
T d1wyub1 225 SRLCKEAGVQLYYDGANLN-AIM-GWARPGD--MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGE 300 (471)
T ss_dssp HHHHHHHTCEEEEEGGGGG-GTT-TTCCHHH--HTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECS
T ss_pred HHHHHhccccccccccchh-hhh-hccccCc--ccccccccccccccccccccccccccceeehhhhhccCCCceecCCC
Confidence 9999999999999875311 111 0111222 37888888888888655 22788888887665320
Q ss_pred ------------HHHhhCCCcchhHHHHHHHHHHH--HHhHHHHhhhHHHHHHHHHHHHhcCCCceEecCCccceEEEEE
Q 018243 230 ------------LRKTLGGGMRQVGVLCAAALVAL--QENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFE 295 (359)
Q Consensus 230 ------------~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 295 (359)
+++....+......++++....+ ++++++..+...+++.++++.|++ +|+++..+....+-+.+.
T Consensus 301 ~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~ 379 (471)
T d1wyub1 301 EGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQ 379 (471)
T ss_dssp SCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEB
T ss_pred ccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeec
Confidence 00001111111122222223233 566666778889999999999987 499874332222223344
Q ss_pred eccchHHHHHHHHHHHHhcCcee----ccC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 018243 296 ITEDSKLYAACLLKKLEEHGVLV----MPE-SSTRVRIVVHHQISANDVHYTLSCFQKIYAGVC 354 (359)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~gi~~----~~~-~~~~lRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 354 (359)
++. +++..++.++|.++|+.. .|. ..+.+.|+++...|++|+|.++++|++++++..
T Consensus 380 ~~~--~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 380 PPE--GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp CST--TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred CCC--CCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 433 356788999999999864 222 456899999999999999999999999998754
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=82.84 E-value=0.62 Score=37.76 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=34.0
Q ss_pred CceeEEEEeccccCCCcee----------------cChhhHHHHHHHHHHcCcEEEEecc
Q 018243 135 PTTRLICLENTHANCGGRC----------------LSVEYTDSVGEIAKKHGLKLHIDGA 178 (359)
Q Consensus 135 ~~~~~v~i~~~~~~ptG~~----------------~~~~~l~~i~~~~~~~~~~li~D~a 178 (359)
-+..+|.|.|+..++.|.. =+.++++++++.|++.|+.||.|-+
T Consensus 27 lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV 86 (354)
T d1g94a2 27 KGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTL 86 (354)
T ss_dssp HTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEee
Confidence 3666788877776665421 1368899999999999999999977
|