Citrus Sinensis ID: 018249

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEEccEEEEEcEEEEEccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEcccccEEEEccccccccccEEEEEccEEEEccccEEccccccccEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHcccEEEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEcccccccccccccEEEEEEEEEEEEcccEEEEEEEEEccccccccccccccEEEEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEcEEEEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEEcEEEccccccccccHHHHccEEEEEEccccccccccccccccccccccEEEHHHHccccccccccccccccccccHHHHHHccHHHHHccccccccccc
MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQaanstkhhpkwigpvghRVITVdvngsgefkSVQAAvdsvpernrMNVLIQISAgcyiekvtvpvskpyitfqgagrdrtVIEWHDracdrgangqqlrtyQTASVTVFANYFSarnisfkntapaplpgmqgWQAAAFrisgdkayfsgcgfygaqdtlcdDAGRHYFKECYIEGSIDFIFGngrsmykdcelHSIATRfgsiaahdrkspdektgFAFVRCrvtgtgplyvgramgqysRIVYSFTYFddlvahggwddwdhisnknKTAFFGVykcwgpgaanvrgaSWARELDYESAHPFLVKSFingrhwiapsda
MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAanstkhhpkwigpvGHRVITVDVNGSGEFKSVqaavdsvpernRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGsiaahdrkspdektgFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA
MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA
**FNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAH*******KTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA****
*********ACFSLFHLYIVTSFLSLALFQ******************WIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA****
MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA
MLFNLMSSVACFSLFHLYIVTSFLSLA*****************HHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA****
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLFNLMSSVACFSLFHLYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q8LPF3362 Probable pectinesterase 6 yes no 0.966 0.958 0.752 1e-158
Q8VYZ3383 Probable pectinesterase 5 no no 0.802 0.751 0.491 2e-80
Q9ZQA3407 Probable pectinesterase 1 no no 0.835 0.737 0.470 6e-77
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.922 0.871 0.445 7e-76
O23038393 Probable pectinesterase 8 no no 0.885 0.809 0.440 6e-72
Q9ZQA4333 Putative pectinesterase 1 no no 0.902 0.972 0.419 1e-69
Q9LY18361 Probable pectinesterase 4 no no 0.821 0.817 0.426 7e-68
Q9LY17361 Probable pectinesterase 5 no no 0.813 0.808 0.410 2e-66
Q84WM7361 Pectinesterase PPME1 OS=A no no 0.821 0.817 0.422 1e-64
Q9LY19361 Probable pectinesterase 4 no no 0.821 0.817 0.422 4e-64
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function desciption
 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/356 (75%), Positives = 297/356 (83%), Gaps = 9/356 (2%)

Query: 13  SLFHLYIVTS--FLSLALFQVTISATAQAANSTK-------HHPKWIGPVGHRVITVDVN 63
           SL +L+ V+   F+S        S  A  +NST        HH KW+GP GH+VITV +N
Sbjct: 7   SLNYLFSVSLLLFVSFHCLCFRFSLVAACSNSTDDQQIQHHHHRKWVGPSGHKVITVSLN 66

Query: 64  GSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWH 123
           G  +F+SVQ AVDS+P+ N  ++ I+I+ G Y EKV VP +KPYITF+GAGRD T IEWH
Sbjct: 67  GHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWH 126

Query: 124 DRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDK 183
           DRA D GANGQQLRTYQTASVTV+ANYF+ARNISF NTAPAPLPGMQGWQA AFRISGDK
Sbjct: 127 DRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDK 186

Query: 184 AYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIA 243
           A+FSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIA+RFGSIA
Sbjct: 187 AFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIA 246

Query: 244 AHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHI 303
           AH R  P+EKTGFAFV CRVTGTGPLYVGRAMGQYSRIVY++TYFD LVAHGGWDDWDH 
Sbjct: 247 AHGRTCPEEKTGFAFVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHK 306

Query: 304 SNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA 359
           SNK+KTAFFGVY C+GPGAA  RG SWAR LDYESAHPF+ KSF+NGRHWIAP DA
Sbjct: 307 SNKSKTAFFGVYNCYGPGAAATRGVSWARALDYESAHPFIAKSFVNGRHWIAPRDA 362
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LY19|PME48_ARATH Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
359474375349 PREDICTED: probable pectinesterase 68-li 0.947 0.974 0.815 1e-167
224071087314 predicted protein [Populus trichocarpa] 0.874 1.0 0.882 1e-166
356497141363 PREDICTED: probable pectinesterase 68-li 0.994 0.983 0.766 1e-163
357482043364 Pectinesterase [Medicago truncatula] gi| 0.896 0.884 0.827 1e-162
356540518358 PREDICTED: probable pectinesterase 68-li 0.980 0.983 0.761 1e-161
356565355354 PREDICTED: probable pectinesterase 68-li 0.966 0.980 0.781 1e-160
449513279338 PREDICTED: probable pectinesterase 68-li 0.880 0.934 0.815 1e-157
297790911362 pectinesterase family protein [Arabidops 0.966 0.958 0.752 1e-157
449469388338 PREDICTED: probable pectinesterase 68-li 0.880 0.934 0.815 1e-157
15238111362 putative pectinesterase 68 [Arabidopsis 0.966 0.958 0.752 1e-157
>gi|359474375|ref|XP_002266321.2| PREDICTED: probable pectinesterase 68-like [Vitis vinifera] gi|297741196|emb|CBI31927.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/341 (81%), Positives = 303/341 (88%), Gaps = 1/341 (0%)

Query: 19  IVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSV 78
           I+T FL  A  + + +    + NSTK H KW+GP GH  ITVD  G+G+F SVQAAVD+V
Sbjct: 10  ILTLFLCYAPLKYS-ATIIPSTNSTKRHHKWVGPSGHLFITVDARGTGDFLSVQAAVDAV 68

Query: 79  PERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRT 138
           P+ N  NVLI+I+AGCY+EKV VPV+KPYITFQG GRD T+IEWHDRA DRG NGQQLRT
Sbjct: 69  PDNNTKNVLIKINAGCYVEKVVVPVTKPYITFQGDGRDETMIEWHDRASDRGTNGQQLRT 128

Query: 139 YQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTL 198
           Y+TASV VFANYFSARNISFKNTAPAP+PGMQGWQAAAFRISGDKAYFSGCGFYGAQDTL
Sbjct: 129 YRTASVIVFANYFSARNISFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTL 188

Query: 199 CDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAF 258
           CDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAA DR SPDEKTGFAF
Sbjct: 189 CDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFAF 248

Query: 259 VRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCW 318
           V C+VTG GPLYVGRAMGQ+SRIVYS+TYFDD+VAHGGWDDWDH SNKNKT FFGVYKCW
Sbjct: 249 VGCKVTGRGPLYVGRAMGQFSRIVYSYTYFDDVVAHGGWDDWDHTSNKNKTVFFGVYKCW 308

Query: 319 GPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA 359
           GPGA  VRG +WARELD+E+AHPFLVKSF+NGRHWIAPSDA
Sbjct: 309 GPGAEAVRGVTWARELDFETAHPFLVKSFVNGRHWIAPSDA 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071087|ref|XP_002303355.1| predicted protein [Populus trichocarpa] gi|222840787|gb|EEE78334.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497141|ref|XP_003517421.1| PREDICTED: probable pectinesterase 68-like [Glycine max] Back     alignment and taxonomy information
>gi|357482043|ref|XP_003611307.1| Pectinesterase [Medicago truncatula] gi|355512642|gb|AES94265.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540518|ref|XP_003538735.1| PREDICTED: probable pectinesterase 68-like [Glycine max] Back     alignment and taxonomy information
>gi|356565355|ref|XP_003550907.1| PREDICTED: probable pectinesterase 68-like [Glycine max] Back     alignment and taxonomy information
>gi|449513279|ref|XP_004164282.1| PREDICTED: probable pectinesterase 68-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297790911|ref|XP_002863340.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309175|gb|EFH39599.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449469388|ref|XP_004152402.1| PREDICTED: probable pectinesterase 68-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15238111|ref|NP_199561.1| putative pectinesterase 68 [Arabidopsis thaliana] gi|75301651|sp|Q8LPF3.1|PME68_ARATH RecName: Full=Probable pectinesterase 68; Short=PE 68; AltName: Full=Pectin methylesterase 68; Short=AtPME68; Flags: Precursor gi|20856815|gb|AAM26686.1| AT5g47500/MNJ7_9 [Arabidopsis thaliana] gi|23308329|gb|AAN18134.1| At5g47500/MNJ7_9 [Arabidopsis thaliana] gi|332008143|gb|AED95526.1| putative pectinesterase 68 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.966 0.958 0.752 2.7e-148
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.807 0.757 0.491 9e-77
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.827 0.781 0.495 2.5e-74
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.835 0.737 0.470 2.5e-72
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.885 0.809 0.440 7.2e-68
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.810 0.873 0.453 1.7e-66
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.821 0.817 0.426 3.2e-65
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.813 0.808 0.410 9.7e-64
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.821 0.817 0.422 1.6e-61
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.821 0.817 0.422 2.7e-61
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
 Identities = 268/356 (75%), Positives = 297/356 (83%)

Query:    13 SLFHLYIVTS--FLSLALFQVTISATAQAANSTK-------HHPKWIGPVGHRVITVDVN 63
             SL +L+ V+   F+S        S  A  +NST        HH KW+GP GH+VITV +N
Sbjct:     7 SLNYLFSVSLLLFVSFHCLCFRFSLVAACSNSTDDQQIQHHHHRKWVGPSGHKVITVSLN 66

Query:    64 GSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWH 123
             G  +F+SVQ AVDS+P+ N  ++ I+I+ G Y EKV VP +KPYITF+GAGRD T IEWH
Sbjct:    67 GHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWH 126

Query:   124 DRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDK 183
             DRA D GANGQQLRTYQTASVTV+ANYF+ARNISF NTAPAPLPGMQGWQA AFRISGDK
Sbjct:   127 DRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDK 186

Query:   184 AYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIA 243
             A+FSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIA+RFGSIA
Sbjct:   187 AFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIA 246

Query:   244 AHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHI 303
             AH R  P+EKTGFAFV CRVTGTGPLYVGRAMGQYSRIVY++TYFD LVAHGGWDDWDH 
Sbjct:   247 AHGRTCPEEKTGFAFVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHK 306

Query:   304 SNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA 359
             SNK+KTAFFGVY C+GPGAA  RG SWAR LDYESAHPF+ KSF+NGRHWIAP DA
Sbjct:   307 SNKSKTAFFGVYNCYGPGAAATRGVSWARALDYESAHPFIAKSFVNGRHWIAPRDA 362
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0016572 "histone phosphorylation" evidence=RCA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LPF3PME68_ARATH3, ., 1, ., 1, ., 1, 10.75280.96650.9585yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
PLN02634359 PLN02634, PLN02634, probable pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-134
PLN02671359 PLN02671, PLN02671, pectinesterase 1e-116
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-108
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-107
PLN02432293 PLN02432, PLN02432, putative pectinesterase 7e-94
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 1e-88
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-76
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-75
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 7e-69
PLN02176340 PLN02176, PLN02176, putative pectinesterase 3e-63
PLN02314586 PLN02314, PLN02314, pectinesterase 2e-52
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-51
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-50
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 2e-49
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 4e-49
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 7e-49
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 6e-46
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-44
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 4e-44
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 8e-44
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 2e-43
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-43
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 5e-42
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-41
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 7e-41
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-39
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-39
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 2e-39
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 6e-39
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-37
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 8e-36
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-30
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-22
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information 
 Score =  639 bits (1649), Expect = 0.0
 Identities = 270/343 (78%), Positives = 292/343 (85%)

Query: 17  LYIVTSFLSLALFQVTISATAQAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVD 76
           L          L     ++T        HH KW+GP GH+VITVD NG G+F+SVQ AVD
Sbjct: 17  LSFHCLCFRFPLVAACSASTDDQQIQHHHHHKWVGPSGHKVITVDANGHGDFRSVQDAVD 76

Query: 77  SVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQL 136
           SVP+ N M+V I+I+AG Y EKV VP +KPYITFQGAGRD T IEWHDRA DRGANGQQL
Sbjct: 77  SVPKNNTMSVTIKINAGFYREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQL 136

Query: 137 RTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQD 196
           RTYQTASVTV+ANYF+ARNISFKNTAPAP+PGMQGWQA AFRISGDKA+F GCGFYGAQD
Sbjct: 137 RTYQTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD 196

Query: 197 TLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGF 256
           TLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIA+RFGSIAAH R  P+EKTGF
Sbjct: 197 TLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGF 256

Query: 257 AFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYK 316
           AFV CRVTGTGPLYVGRAMGQYSRIVY++TYFD +VAHGGWDDWDH SNK+KTAFFGVY 
Sbjct: 257 AFVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDAVVAHGGWDDWDHTSNKSKTAFFGVYN 316

Query: 317 CWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPSDA 359
           CWGPGAA VRG SWARELDYESAHPFL KSF+NGRHWIAP DA
Sbjct: 317 CWGPGAAAVRGVSWARELDYESAHPFLAKSFVNGRHWIAPRDA 359

Length = 359
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PLN02634359 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02497331 probable pectinesterase 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02432293 putative pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773317 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.42
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.74
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.62
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.23
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.63
PLN02793443 Probable polygalacturonase 97.61
PLN02682369 pectinesterase family protein 97.49
KOG1777 625 consensus Putative Zn-finger protein [General func 97.37
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.13
PLN02671359 pectinesterase 96.98
PLN02773317 pectinesterase 96.66
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.49
PLN02432293 putative pectinesterase 96.35
PLN02497331 probable pectinesterase 96.35
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.3
PLN02480343 Probable pectinesterase 96.22
PLN02218431 polygalacturonase ADPG 96.18
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.11
PLN03003456 Probable polygalacturonase At3g15720 96.08
PLN02304379 probable pectinesterase 96.04
PLN02634359 probable pectinesterase 96.0
PLN02665366 pectinesterase family protein 95.97
PLN03010409 polygalacturonase 95.97
PLN02155394 polygalacturonase 95.95
smart00656190 Amb_all Amb_all domain. 95.88
PLN02176340 putative pectinesterase 95.86
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.59
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.59
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.53
PRK10531422 acyl-CoA thioesterase; Provisional 95.5
PLN02916502 pectinesterase family protein 95.23
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.92
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.9
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.79
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.68
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.67
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.65
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.38
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.34
PLN02197588 pectinesterase 94.3
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.27
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.16
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.12
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.98
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.96
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.95
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.74
PLN02301548 pectinesterase/pectinesterase inhibitor 93.65
PLN02314586 pectinesterase 93.6
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.5
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.11
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 92.68
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.48
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.23
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 89.25
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 88.57
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 87.66
PLN02188404 polygalacturonase/glycoside hydrolase family prote 86.62
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 86.04
>PLN02634 probable pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=7.4e-102  Score=756.77  Aligned_cols=322  Identities=83%  Similarity=1.429  Sum_probs=305.2

Q ss_pred             hccCCCCCCCCCCCCCCCcEEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEecceEeeeeeecCCCCCEEEeeCCCCc
Q 018249           38 QAANSTKHHPKWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDR  117 (359)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~i~V~~~g~g~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~ItL~G~g~~~  117 (359)
                      .+..++++++.|+.|..+..++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|+||++||+|+|+|+|.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~i~Va~dGsGdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~EkV~Ip~~k~~ItL~G~g~~~  117 (359)
T PLN02634         38 DQQIQHHHHHKWVGPSGHKVITVDANGHGDFRSVQDAVDSVPKNNTMSVTIKINAGFYREKVVVPATKPYITFQGAGRDV  117 (359)
T ss_pred             chhhhhccCccccCCCCCccEEECCCCCCCccCHHHHHhhCcccCCccEEEEEeCceEEEEEEEcCCCCeEEEEecCCCc
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCCCcccCCCCCCccccccceEEEEEeCcEEEEeeeeecCCCCCCCCCCCCceEEEEEecCcceEEeeEEecccce
Q 018249          118 TVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDT  197 (359)
Q Consensus       118 tvI~~~~~~~~~~~~~~~~~t~~sat~~v~a~~f~~~nItf~Nt~~~~~~g~~~~qAvAl~v~~d~~~f~~C~f~g~QDT  197 (359)
                      |+|+|++.+...+.+++.++|+.++||.|.+++|+++||||+|+++...+|..++|||||++.+||++|++|+|+|||||
T Consensus       118 TiIt~~~~a~~~~~~g~~~~T~~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDT  197 (359)
T PLN02634        118 TAIEWHDRASDRGANGQQLRTYQTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDT  197 (359)
T ss_pred             eEEEecccccccCCCCcccccccceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccce
Confidence            99999988776666777889999999999999999999999999976555667789999999999999999999999999


Q ss_pred             eEeCCCcEEEEccEEEcceeEEeccceeEEeecEEEEecCCceeEEeccCCCCCCceeEEEEccEEeecCcEEeeeeccc
Q 018249          198 LCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQ  277 (359)
Q Consensus       198 L~~~~gr~yf~~c~I~G~VDFIfG~g~a~fe~c~i~~~~~~~g~ItA~~r~~~~~~~G~vf~~c~i~~~g~~yLGRpW~~  277 (359)
                      ||++.|||||++|+|||+||||||+|+++||+|+|+++.++.|+||||+|+++.+++||||.+|+|++++++||||||++
T Consensus       198 L~~~~gR~yf~~CyIeG~VDFIFG~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g~~yLGRPW~~  277 (359)
T PLN02634        198 LCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPLYVGRAMGQ  277 (359)
T ss_pred             eeeCCCCEEEEeeEEcccccEEcCCceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCcceEecCCCCC
Confidence            99999999999999999999999999999999999998766799999999988899999999999999999999999999


Q ss_pred             cceEEEEccccCCcccCCCCCCCCCCCCCCCccEEEEeCccCCCCCCCCCcccccCCCHHhHcCccccceecCCCCCCCC
Q 018249          278 YSRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIAPS  357 (359)
Q Consensus       278 ~srvvf~~~~~~~~I~p~GW~~w~~~~~~~~t~~f~EY~~~GpGa~~~~Rv~w~~~Lt~~ea~~~t~~~~i~g~~W~~~~  357 (359)
                      |+||||++|+|+++|.|+||.+|+++.+..++++|+||+|+|||+++++||+|+++|+++||.+|+.++||+|++|||+.
T Consensus       278 yarvVf~~t~l~~~I~p~GW~~W~~~~~~~~t~~faEY~n~GPGA~~s~Rv~w~~~Lt~~ea~~f~~~~fi~g~~Wl~~~  357 (359)
T PLN02634        278 YSRIVYAYTYFDAVVAHGGWDDWDHTSNKSKTAFFGVYNCWGPGAAAVRGVSWARELDYESAHPFLAKSFVNGRHWIAPR  357 (359)
T ss_pred             cceEEEEecccCCEEccCccCCCCCCCCCCCcEEEEEEecccCCCCCCCCCcccccCCHHHHHHhhHhhccCCCCCCCcc
Confidence            99999999999999999999999986545789999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 018249          358 DA  359 (359)
Q Consensus       358 ~~  359 (359)
                      ++
T Consensus       358 ~~  359 (359)
T PLN02634        358 DA  359 (359)
T ss_pred             cC
Confidence            75

>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-37
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-29
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 9e-18
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 7e-16
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 7e-16
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-15
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 151/319 (47%), Gaps = 32/319 (10%)
Query: 53  VGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQG 112
           VG  V+ V  +GSG++K+V  AV + PE ++   +I+I AG Y E V VP  K  I F G
Sbjct: 5   VGPNVV-VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG 63
Query: 113 AGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGW 172
            GR  T+I       D         T+ +A+V      F AR+I+F+NTA     G    
Sbjct: 64  DGRTSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKH 112
Query: 173 QAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL 232
           QA A R+  D + F  C     QD+L   + R +F  C+I G++DFIFGN   + +DC++
Sbjct: 113 QAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI 172
Query: 233 HSIATRFGS-----IAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQY 278
           H  A R GS     + A  R  P++ TG    + R+  T          P Y+GR   +Y
Sbjct: 173 H--ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY 230
Query: 279 SRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASW---ARELD 335
           SR V   +   +++   GW  WD  +    T ++G Y+  G GAA     +W        
Sbjct: 231 SRTVVMQSSITNVINPAGWFPWDG-NFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITS 289
Query: 336 YESAHPFLVKSFINGRHWI 354
              A  F   SFI G  W+
Sbjct: 290 STEAQGFTPGSFIAGGSWL 308
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-118
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-118
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-104
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-104
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 6e-84
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  343 bits (882), Expect = e-118
 Identities = 98/315 (31%), Positives = 146/315 (46%), Gaps = 27/315 (8%)

Query: 58  ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDR 117
           + V  +GSG++K+V  AV + PE ++   +I+I AG Y E V VP  K  I F G GR  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 118 TVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAF 177
           T+I       D         T+ +A+V      F AR+I+F+NTA     G    QA A 
Sbjct: 69  TIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVAL 117

Query: 178 RISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIAT 237
           R+  D + F  C     QD+L   + R +F  C+I G++DFIFGN   + +DC++H+   
Sbjct: 118 RVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRP 177

Query: 238 R---FGSIAAHDRKSPDEKTGFAFVRCRVTGTGPL---------YVGRAMGQYSRIVYSF 285
                  + A  R  P++ TG    + R+  T  L         Y+GR   +YSR V   
Sbjct: 178 GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237

Query: 286 TYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWA---RELDYESAHPF 342
           +   +++   GW  WD  +    T ++G Y+  G GAA     +W           A  F
Sbjct: 238 SSITNVINPAGWFPWDG-NFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296

Query: 343 LVKSFINGRHWIAPS 357
              SFI G  W+  +
Sbjct: 297 TPGSFIAGGSWLKAT 311
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.63
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.85
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.46
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.87
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.83
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.81
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.79
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.61
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.61
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.56
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.53
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.53
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.3
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.25
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.24
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.18
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.14
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.13
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.94
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.81
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.69
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.62
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.61
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.45
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.25
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.16
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.13
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.91
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.77
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.59
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.47
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.02
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 94.93
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 94.1
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 92.53
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 91.4
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 84.49
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 84.27
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 84.25
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 84.21
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 82.74
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 81.46
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=6.4e-89  Score=662.47  Aligned_cols=293  Identities=33%  Similarity=0.612  Sum_probs=274.0

Q ss_pred             CCcEEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEecceEeeeeeecCCCCCEEEeeCCCCceEEEeCCCcccCCCCC
Q 018249           54 GHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANG  133 (359)
Q Consensus        54 ~~~~i~V~~~g~g~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~ItL~G~g~~~tvI~~~~~~~~~~~~~  133 (359)
                      ....++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|||+|++.++|+|+++...      .
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~------~   78 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV------Q   78 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCT------T
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccc------c
Confidence            3468999999999999999999999999999999999999999999999989999999999999999998653      2


Q ss_pred             CccccccceEEEEEeCcEEEEeeeeecCCCCCCCCCCCCceEEEEEecCcceEEeeEEecccceeEeCCCcEEEEccEEE
Q 018249          134 QQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIE  213 (359)
Q Consensus       134 ~~~~t~~sat~~v~a~~f~~~nItf~Nt~~~~~~g~~~~qAvAl~v~~d~~~f~~C~f~g~QDTL~~~~gr~yf~~c~I~  213 (359)
                      ++++|++++||.|.+++|+++||||+|+++.     .++||+||++.+|++.|+||+|.|+|||||++++||||++|+|+
T Consensus        79 ~g~~t~~satv~v~a~~f~~~nlt~~Nt~g~-----~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~  153 (319)
T 1gq8_A           79 DGSTTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIA  153 (319)
T ss_dssp             TTCCTGGGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEE
T ss_pred             CCCCccceEEEEEECCCEEEEEeEeEccCCC-----cCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEE
Confidence            3578999999999999999999999999853     35799999999999999999999999999999999999999999


Q ss_pred             cceeEEeccceeEEeecEEEEecC---CceeEEeccCCCCCCceeEEEEccEEeecC---------cEEeeeeccccceE
Q 018249          214 GSIDFIFGNGRSMYKDCELHSIAT---RFGSIAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQYSRI  281 (359)
Q Consensus       214 G~VDFIfG~g~a~fe~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~~c~i~~~g---------~~yLGRpW~~~srv  281 (359)
                      |+||||||+|+++||+|+|+++.+   +.++||||+|+++++++||||+||+|++++         ++||||||++|+|+
T Consensus       154 G~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~  233 (319)
T 1gq8_A          154 GTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRT  233 (319)
T ss_dssp             ESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEE
T ss_pred             eeeeEEecCCcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceE
Confidence            999999999999999999998753   568999999999999999999999999865         68999999999999


Q ss_pred             EEEccccCCcccCCCCCCCCCCCCCCCccEEEEeCccCCCCCCCCCccccc--CCC-HHhHcCccccceecCCCCCCCCC
Q 018249          282 VYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWAR--ELD-YESAHPFLVKSFINGRHWIAPSD  358 (359)
Q Consensus       282 vf~~~~~~~~I~p~GW~~w~~~~~~~~t~~f~EY~~~GpGa~~~~Rv~w~~--~Lt-~~ea~~~t~~~~i~g~~W~~~~~  358 (359)
                      ||++|+|+++|+|+||.+|++.. +.++++|+||+|+|||+++++||+|++  +|+ ++||.+|+..+||+|++|+|+++
T Consensus       234 v~~~t~~~~~I~p~GW~~w~~~~-~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~  312 (319)
T 1gq8_A          234 VVMQSSITNVINPAGWFPWDGNF-ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             EEESCEECTTBCTTCCCCSSTTT-TTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             EEEeccCCCcccccccCcCCCCC-CCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCC
Confidence            99999999999999999999876 789999999999999999999999997  565 68999999999999999999875
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-102
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-74
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  301 bits (772), Expect = e-102
 Identities = 99/315 (31%), Positives = 147/315 (46%), Gaps = 27/315 (8%)

Query: 58  ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDR 117
           + V  +GSG++K+V  AV + PE ++   +I+I AG Y E V VP  K  I F G GR  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 118 TVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAF 177
           T+I       D         T+ +A+V      F AR+I+F+NTA     G    QA A 
Sbjct: 69  TIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVAL 117

Query: 178 RISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIAT 237
           R+  D + F  C     QD+L   + R +F  C+I G++DFIFGN   + +DC++H+   
Sbjct: 118 RVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRP 177

Query: 238 RFGS---IAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQYSRIVYSF 285
             G    + A  R  P++ TG    + R+  T          P Y+GR   +YSR V   
Sbjct: 178 GSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQ 237

Query: 286 TYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWA---RELDYESAHPF 342
           +   +++   GW  WD  +    T ++G Y+  G GAA     +W           A  F
Sbjct: 238 SSITNVINPAGWFPWDG-NFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296

Query: 343 LVKSFINGRHWIAPS 357
              SFI G  W+  +
Sbjct: 297 TPGSFIAGGSWLKAT 311
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.12
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.79
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.36
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.57
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.27
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.08
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.76
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.74
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.63
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.4
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.32
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.06
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.9
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.64
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.59
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.11
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.02
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.25
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 91.03
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 87.04
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 84.99
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 84.17
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.8e-93  Score=688.16  Aligned_cols=290  Identities=33%  Similarity=0.620  Sum_probs=272.7

Q ss_pred             EEEEcCCCCCCCccHHHHHhhCCCCCCceEEEEEecceEeeeeeecCCCCCEEEeeCCCCceEEEeCCCcccCCCCCCcc
Q 018249           57 VITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQL  136 (359)
Q Consensus        57 ~i~V~~~g~g~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~ItL~G~g~~~tvI~~~~~~~~~~~~~~~~  136 (359)
                      .++|++||+|+|+|||+||+++|.++++|++|+|+||+|+|+|+||++||+|+|+|++++.|+|+++.++      .++.
T Consensus         8 ~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~------~~~~   81 (319)
T d1gq8a_           8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV------QDGS   81 (319)
T ss_dssp             SEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCT------TTTC
T ss_pred             CEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccc------cCCC
Confidence            5999999999999999999999999999999999999999999999999999999999999999998764      2456


Q ss_pred             ccccceEEEEEeCcEEEEeeeeecCCCCCCCCCCCCceEEEEEecCcceEEeeEEecccceeEeCCCcEEEEccEEEcce
Q 018249          137 RTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSI  216 (359)
Q Consensus       137 ~t~~sat~~v~a~~f~~~nItf~Nt~~~~~~g~~~~qAvAl~v~~d~~~f~~C~f~g~QDTL~~~~gr~yf~~c~I~G~V  216 (359)
                      +|+.++||.|.+++|+++||||+|+++.     .++|||||++.+||++||+|+|+|||||||++.|||||++|+|||+|
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~-----~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~v  156 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGA-----AKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTV  156 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCG-----GGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESS
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCC-----CCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeec
Confidence            7889999999999999999999999853     35799999999999999999999999999999999999999999999


Q ss_pred             eEEeccceeEEeecEEEEecC---CceeEEeccCCCCCCceeEEEEccEEeecC---------cEEeeeeccccceEEEE
Q 018249          217 DFIFGNGRSMYKDCELHSIAT---RFGSIAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQYSRIVYS  284 (359)
Q Consensus       217 DFIfG~g~a~fe~c~i~~~~~---~~g~ItA~~r~~~~~~~G~vf~~c~i~~~g---------~~yLGRpW~~~srvvf~  284 (359)
                      |||||+|+++||+|+|+++.+   ..++||||+|+++.+++||||.+|+|++++         ++||||||++++||||+
T Consensus       157 DFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~  236 (319)
T d1gq8a_         157 DFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM  236 (319)
T ss_dssp             SCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEE
T ss_pred             cEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEE
Confidence            999999999999999998754   347999999999999999999999999864         57999999999999999


Q ss_pred             ccccCCcccCCCCCCCCCCCCCCCccEEEEeCccCCCCCCCCCccccc---CCCHHhHcCccccceecCCCCCCCCC
Q 018249          285 FTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWAR---ELDYESAHPFLVKSFINGRHWIAPSD  358 (359)
Q Consensus       285 ~~~~~~~I~p~GW~~w~~~~~~~~t~~f~EY~~~GpGa~~~~Rv~w~~---~Lt~~ea~~~t~~~~i~g~~W~~~~~  358 (359)
                      +|+|+++|+|+||.+|+... ..++++|+||+|+|||+++++||+|++   +|+++||++|+.++||+|++|||.|+
T Consensus       237 ~t~l~~~I~p~GW~~w~~~~-~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~  312 (319)
T d1gq8a_         237 QSSITNVINPAGWFPWDGNF-ALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             SCEECTTBCTTCCCCSSTTT-TTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             ecccccccccccccccCCCC-ccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCC
Confidence            99999999999999999876 789999999999999999999999984   79999999999999999999999775
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure