Citrus Sinensis ID: 018255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNNSFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAHT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccEEccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHHcccccccccccccccEEEccccccccccccccccccccEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccEEEcccEEcccccccccEEEEccccccccHHHHHHccccccEEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MEEVEEANKIAVESCYRVLNLLsqhnkdplqvHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKnylkpttpsnlpqnifldspntnlskpilspkplqvipphdffettpssssirREKLSTfnnnnnnnnnnrspalqmatpsQSLQQFLYQQQIQRLQFQQQHMGMMmyssggnngginlkfdgstscctpsnmtmsSTKSLISSlsldggsnnsfhligvpqhssqisqhskkrcfssraedgslkcstsgkchcskrrkhRVKRsikvpaisnkvadippdeytwrkygqkpikgsphprgyykcssvrgcparkhvercpeepsMLIVTYEgehnhsrimqssqsaht
Flexible Loop (DISEMBL)
MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVsllshgttrvrklrknylkpttpsnlpqnifLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNNSFHLIGVPQHSSQISQHSKKRCFSsraedgslkcstsgkchcskrrkhrvkrsikvpaisnkvadippdeyTWRKYgqkpikgsphprgyykcSSVRGCParkhvercpeePSMLIVTYEGEHNhsrimqssqsaht
Low Complexity Region (SEG)
MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSSSSIRREKLSTFnnnnnnnnnnRSPALQMATPSqslqqflyqqqiqrlqfqqqHmgmmmyssggnnggINLKFDGSTSCCTPSNMTMsstkslisslsldggsnnsFHLIGVPqhssqisqhsKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAHT
Disordered region (IsUnstruct)
*********IAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNYL***********************************************************************************FLYQQQIQRLQFQ*****************INLKF*****************************************************************************************AISNKVADIPPDEYTWRKYGQ**********GYYKCSSVRGCPA*************LIVTY******************
Disordered Region (DISOPRED)
MEEVEEANKIAVESCYRVL************************DEVVF***************************************************************************************************************************************************************************************************************************************************EYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHN*************
Disordered Region (DISEMBL)
********KIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFET********REKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNNSFHLIGVP********************************************SIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH************
Disordered Region (DISPRO)
*******************N*L************QYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKN*************************************************SIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQ****************************************************************************************************HRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGE***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNNSFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q93WU6	330	Probable WRKY transcripti	yes	no	0.883	0.960	0.540	1e-87
Q9SR07	330	Probable WRKY transcripti	no	no	0.852	0.927	0.501	5e-84
O04336	380	Probable WRKY transcripti	no	no	0.451	0.426	0.676	3e-63
Q32SG4	397	Protein WRKY1 OS=Zea mays	N/A	no	0.933	0.843	0.405	1e-59
Q9SV15	325	Probable WRKY transcripti	no	no	0.766	0.846	0.365	2e-43
O22176	317	Probable WRKY transcripti	no	no	0.314	0.356	0.669	1e-42
Q9SJA8	321	Probable WRKY transcripti	no	no	0.298	0.333	0.681	3e-42
Q9STX0	353	Probable WRKY transcripti	no	no	0.423	0.430	0.547	2e-41
O64747	427	Probable WRKY transcripti	no	no	0.222	0.187	0.550	2e-22
Q9LP56	259	Probable WRKY transcripti	no	no	0.256	0.355	0.525	3e-22

>sp|Q93WU6|WRK74_ARATH Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/372 (54%), Positives = 243/372 (65%), Gaps = 55/372 (14%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVE ANK AVESC+ VLNLLSQ   D        +++ +ET E V KFKRV SLLS G
Sbjct: 1   MEEVEAANKAAVESCHGVLNLLSQQTNDS-------KSIMVETREAVCKFKRVSSLLSRG 53

Query: 61  TT--RVRKLRKNYLKPTTPSNLPQNIFLDSP---NTNLSK--PILSPKPLQVIPPHDFFE 113
               +++KL  N  K ++ S LPQ++FL+SP   N  +S   PIL+PKPLQ++P      
Sbjct: 54  LGQRKIKKLNNNNYKFSS-SLLPQHMFLESPVCSNNAISGCIPILAPKPLQIVPAGP--- 109

Query: 114 TTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMG 173
                       L  FN N   + +     L++  PS    + +  +  Q +   QQ   
Sbjct: 110 ----------PPLMLFNQNMCLDKS----FLELKPPS---SRAVDPKPYQFIHTHQQG-- 150

Query: 174 MMMYSSGGNNGGINLKFDGS--TSCCTPSNMTMSSTKSLISSLSLDGG----SNNSFHLI 227
             +YS   +  G+NLKFDGS   SC +PS    + ++S +SSLS+DG       NSFHLI
Sbjct: 151 --VYSR--SKSGLNLKFDGSIGASCYSPS--ISNGSRSFVSSLSMDGSVTDYDRNSFHLI 204

Query: 228 GVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVAD 287
           G+PQ S  ISQHS++   S     GSLKC +  KCHCSK+RK RVKRSIKVPAISNK+AD
Sbjct: 205 GLPQGSDHISQHSRRTSCS-----GSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIAD 259

Query: 288 IPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           IPPDEY+WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC EE SMLIVTYEGEHNH
Sbjct: 260 IPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNH 319

Query: 348 SRIMQSSQSAHT 359
           SRI+ SSQSAHT
Sbjct: 320 SRIL-SSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR07|WRK39_ARATH Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=2 SV=1

 Score =  311 bits (797), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 192/383 (50%), Positives = 235/383 (61%), Gaps = 77/383 (20%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVE AN+ A+ESC+ VLNLLSQ   DP       ++L +ET EVV KFKRV SLL+ G
Sbjct: 1   MEEVEAANRSAIESCHGVLNLLSQRTSDP-------KSLTVETGEVVSKFKRVASLLTRG 53

Query: 61  TTRVRKLRKNYLKPTTPSNLPQNIFLDSP---NTNLSKP---ILSPKPLQVIPPHDFFET 114
               +    N  +    S+ PQ+IFL+SP     +LS     +L+P+PLQ++P    +  
Sbjct: 54  LGHGKFRSTNKFR----SSFPQHIFLESPICCGNDLSGDYTQVLAPEPLQMVPASAVY-- 107

Query: 115 TPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSL-------QQFL------YQQQ 161
                                  N   P  Q+  PS  L       + FL      ++  
Sbjct: 108 -----------------------NEMEPKHQLGHPSLMLSHKMCVDKSFLELKPPPFRAP 144

Query: 162 IQRLQFQQQHMGMMMYSSGGNNGGINLKFDGS-TSCCTPSNMTMSSTKSLISSLSLDGG- 219
            Q +   QQ    + YS   +N G+NLKFDGS +SC TPS    + ++S +SSLS+D   
Sbjct: 145 YQLIHNHQQ----IAYSR--SNSGVNLKFDGSGSSCYTPS--VSNGSRSFVSSLSMDASV 196

Query: 220 ---SNNSFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSI 276
                NSFHL G+ + S Q  QH++K C       GSLKC +  KCHCSK+RK RVKRSI
Sbjct: 197 TDYDRNSFHLTGLSRGSDQ--QHTRKMC------SGSLKCGSRSKCHCSKKRKLRVKRSI 248

Query: 277 KVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSM 336
           KVPAISNK+ADIPPDEY+WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC +E SM
Sbjct: 249 KVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSM 308

Query: 337 LIVTYEGEHNHSRIMQSSQSAHT 359
           LIVTYEGEHNHSRI+ SSQSAHT
Sbjct: 309 LIVTYEGEHNHSRIL-SSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 139/173 (80%), Gaps = 11/173 (6%)

Query: 183 NGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGG-----SNNSFHLIGVPQHSSQIS 237
           NGGI+L FD S+  CTP   TMSST+S +SSLS+DG        NSFH  GVP  + Q S
Sbjct: 207 NGGISLSFDNSS--CTP---TMSSTRSFVSSLSIDGSVANIEGKNSFHF-GVPSSTDQNS 260

Query: 238 QHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRK 297
            HSK++C     E GSLKC +S +CHC+K+RKHRV+RSI+VPAISNKVADIPPD+Y+WRK
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRK 320

Query: 298 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI 350
           YGQKPIKGSP+PRGYYKCSS+RGCPARKHVERC E+P+MLIVTYE EHNH ++
Sbjct: 321 YGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKL 373

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays PE=1 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 223/409 (54%), Gaps = 74/409 (18%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLS-- 58
           ME +EEAN+ AVESC+RVL LLS    +P       + L   T E V KF  + + LS  
Sbjct: 1   MEGMEEANRTAVESCHRVLALLS----NPHGQLVPSKELVAATGEAVAKFGSLTAKLSNS 56

Query: 59  ------HGTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSK---------PILSPKPL 103
                  G  RVRK++K             N+FL+S     +          PIL    L
Sbjct: 57  NGDGLLQGHARVRKVKKPL------HIFDSNLFLESSAVAAAAAPAKTPSPSPILG---L 107

Query: 104 QVIPPHDFFETTPSSSSIR-------REKLSTFNNNNNNNNNNRSPALQM---------- 146
           Q+ P +  FE + S   +R       R  L         + +   P +QM          
Sbjct: 108 QLFPRYHQFEGSSSKDPVRIPTQFPKRLLLEKPTAGMEGSTSQSPPIVQMVQPVSVAPPA 167

Query: 147 ATPSQSL----------------QQFLYQQQIQRLQFQQQHMGMMMYSSGGNNGG----I 186
            TP+ +L                 Q + Q +IQ    ++ ++G    S  G  GG    +
Sbjct: 168 GTPTPALPPAHLHFIQQQQSYQRFQLMQQMKIQSEMMKRSNLGDQGGSLSGGGGGGRKGV 227

Query: 187 NLKFDGSTSCCTPSNMTMSSTKSLISSL-SLDGG-SNNSFHLIGVPQHSS--QISQHSKK 242
           NLKFD S++C   S+ +  S+ S+  SL SLDG  ++  F L+   Q +S  ++    ++
Sbjct: 228 NLKFD-SSNCTASSSRSFLSSLSMEGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQRR 286

Query: 243 RCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKP 302
           RC     EDG+ +C+T  +CHCSK+RK R++RSIKVPAISNKVADIP DE++WRKYGQKP
Sbjct: 287 RCAGR--EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKP 344

Query: 303 IKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIM 351
           IKGSPHPRGYYKCSSVRGCPARKHVERC ++PSMLIVTYEG+HNH+R++
Sbjct: 345 IKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVL 393

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Zea mays (taxid: 4577)

>sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 180/356 (50%), Gaps = 81/356 (22%)

Query: 4   VEEANKIAVESCYRVLNLLS-----QHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLS 58
           ++EA    ++S   ++ +LS     QHN D  ++          TD  V KFK V+SLL+
Sbjct: 17  IQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEI----------TDFTVSKFKTVISLLN 66

Query: 59  H-GTTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPIL--SPKPLQVIPPHDFFETT 115
             G  R R+   +         L   I     NT    PI+  +    Q++PP       
Sbjct: 67  RTGHARFRRGPVHSTSSAASQKLQSQIV---KNTQPEAPIVRTTTNHPQIVPP------- 116

Query: 116 PSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMM 175
           PSS ++   K S F                  T ++S +          L+F +++  + 
Sbjct: 117 PSSVTLDFSKPSIF-----------------GTKAKSAE----------LEFSKENFSVS 149

Query: 176 MYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDG-GSNNSFHLIGVPQHSS 234
           + SS  ++    +  DGS          +S+ K  ++S  L    S+    L G P    
Sbjct: 150 LNSSFMSSA---ITGDGS----------VSNGKIFLASAPLQPVNSSGKPPLAGHPY--- 193

Query: 235 QISQHSKKRCFS---SRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPD 291
                 +KRC     S +  G +  S  GKCHC K RK+R+KR+++VPAIS K+ADIPPD
Sbjct: 194 ------RKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPD 247

Query: 292 EYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           EY+WRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER  ++P+MLIVTYEGEH H
Sbjct: 248 EYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 97/118 (82%), Gaps = 5/118 (4%)

Query: 234 SQISQHSKKRCFSSRAEDGSLKC---STSGKCHCSKRRKHRVKRSIKVPAISNKVADIPP 290
           S  S+ +K++C S     G  KC   S+SG+CHCSK+RK + +R I+VPAIS K++D+PP
Sbjct: 183 SSFSKSTKRKCNSENLLTG--KCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPP 240

Query: 291 DEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHS 348
           D+Y+WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER  ++ SMLIVTYEG+HNHS
Sbjct: 241 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHS 298

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJA8|WRK17_ARATH Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=2 SV=2

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 90/110 (81%), Gaps = 3/110 (2%)

Query: 241 KKRCFS---SRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRK 297
           +KRCF    S    G +  S +GKCHC K RK+R+KR+++VPA+S K+ADIPPDEY+WRK
Sbjct: 191 RKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRK 250

Query: 298 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           YGQKPIKGSPHPRGYYKCS+ RGCPARKHVER  ++ +MLIVTYEGEH H
Sbjct: 251 YGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRH 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 112/157 (71%), Gaps = 5/157 (3%)

Query: 204 MSSTKSLISSLSLDGGSNNSFHLIGVPQHS--SQISQHSKKRCFSSRAEDGSLKCSTSGK 261
           +S+T S +SS   D    +S H+    + +  SQ+S    K   SS +       S S +
Sbjct: 196 VSATNSFMSSHRCD---TDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKRRCNSSPSSR 252

Query: 262 CHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGC 321
           CHCSK+RK RVKR I+VPA+S+K+ADIP DE++WRKYGQKPIKGSPHPRGYYKCSSVRGC
Sbjct: 253 CHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGC 312

Query: 322 PARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAH 358
           PARKHVER  ++  MLIVTYEG+HNH+ +++++   H
Sbjct: 313 PARKHVERALDDAMMLIVTYEGDHNHALVLETTTMNH 349

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 9/89 (10%)

Query: 266 KRRKHRVKRSIKVPA-------ISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSV 318
           KRRK + K+ + +PA        S +V  +P D + WRKYGQKPIKGSP+PRGYY+CSS 
Sbjct: 186 KRRKSQAKKVVCIPAPAAMNSRSSGEV--VPSDLWAWRKYGQKPIKGSPYPRGYYRCSSS 243

Query: 319 RGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           +GC ARK VER   +P+ML++TY  EHNH
Sbjct: 244 KGCSARKQVERSRTDPNMLVITYTSEHNH 272

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 7/99 (7%)

Query: 263 HCSKRRKHRV-KRSIKVP-----AISNKVADIPP-DEYTWRKYGQKPIKGSPHPRGYYKC 315
           H  KR +  V KR + VP        +K    PP D + WRKYGQKPIKGSP+PRGYY+C
Sbjct: 40  HSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRC 99

Query: 316 SSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSS 354
           SS +GCPARK VER  ++P+M+++TY  EHNH   + SS
Sbjct: 100 SSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSS 138

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
259121415	354	WRKY transcription factor 25 [(Populus t	0.933	0.946	0.621	1e-104
224123454	355	predicted protein [Populus trichocarpa]	0.938	0.949	0.620	1e-104
224131226	353	predicted protein [Populus trichocarpa]	0.930	0.946	0.605	1e-100
296087892	304	unnamed protein product [Vitis vinifera]	0.830	0.980	0.586	6e-97
225463956	362	PREDICTED: probable WRKY transcription f	0.935	0.928	0.571	2e-96
350540816	342	WRKY8, partial [Panax quinquefolius]	0.930	0.976	0.548	2e-88
224082746	347	predicted protein [Populus trichocarpa]	0.910	0.942	0.534	4e-87
255559953	353	WRKY transcription factor, putative [Ric	0.908	0.923	0.512	4e-87
206574999	341	WRKY74-1 transcription factor [Brassica	0.905	0.953	0.538	1e-86
15241875	330	putative WRKY transcription factor 74 [A	0.883	0.960	0.540	7e-86

>gi|259121415|gb|ACV92027.1| WRKY transcription factor 25 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/378 (62%), Positives = 272/378 (71%), Gaps = 43/378 (11%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVEEA+K A+ESC RV+ LL Q  KD +Q      NL +ET E VFKFKRV+SLLS G
Sbjct: 1   MEEVEEAHKAAIESCNRVIGLLCQE-KDQVQ----GSNLMVETRETVFKFKRVISLLSTG 55

Query: 61  TT--RVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFET---- 114
               RVRK++K  L+P+    LPQNIFLDSPN    K ILSPKPLQ++PP +F ET    
Sbjct: 56  LGHGRVRKMKK--LRPS----LPQNIFLDSPNC---KTILSPKPLQMVPP-NFLETPLTD 105

Query: 115 --TPSSSSIRREKLSTFNNNNNNNNNNRSPALQM--ATPSQSLQQFLYQQQIQRLQFQQQ 170
               S  SI+  +     N     N+N SP +Q+    P Q+ Q     QQ+QR+ FQQQ
Sbjct: 106 MDAKSKPSIQISQKMFLENPVLELNSNISPPVQIMQTKPPQNFQLVQQHQQVQRMHFQQQ 165

Query: 171 HMGMM-----MYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNN--- 222
              M      +YS   +NGGINLKFDGST  CTP   TMSST+S ISSLS+DG  +N   
Sbjct: 166 QQQMKYQADRVYSR--SNGGINLKFDGST--CTP---TMSSTRSFISSLSMDGAVSNFDG 218

Query: 223 -SFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAI 281
            SFHLIG+P  S  ISQ +++RC S R EDG+ KCS+SGKCHCSKRRK RVKRSIKVPAI
Sbjct: 219 DSFHLIGMPHSSDHISQQTRRRC-SGRGEDGNAKCSSSGKCHCSKRRKLRVKRSIKVPAI 277

Query: 282 SNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTY 341
           SNKVADIPPDEY+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+PSMLIVTY
Sbjct: 278 SNKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLEDPSMLIVTY 337

Query: 342 EGEHNHSRIMQSSQSAHT 359
           EGEHNHSR++ SSQSAHT
Sbjct: 338 EGEHNHSRLI-SSQSAHT 354

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123454|ref|XP_002319082.1| predicted protein [Populus trichocarpa] gi|222857458|gb|EEE95005.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/377 (62%), Positives = 270/377 (71%), Gaps = 40/377 (10%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVEE +K A+ESC RV+ LL Q  KD +Q     RNL +ET E VFKFKRV+SLLS G
Sbjct: 1   MEEVEEVHKAAIESCNRVIGLLCQQ-KDQVQ----GRNLMVETRETVFKFKRVISLLSTG 55

Query: 61  TT--RVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFET---- 114
               RVRK++K  L+P+    LPQNIFLDSPN    K +LSPKPLQ++PP +F ET    
Sbjct: 56  LGHGRVRKMKK--LRPS----LPQNIFLDSPNC---KTVLSPKPLQMVPP-NFLETPLTD 105

Query: 115 --TPSSSSIR-REKLSTFNNNNNNNNNNRSPALQMAT-PSQSLQQFLYQQQIQRLQFQQQ 170
               S  SI+  +K+   N     N+N R P   M T P Q+ Q     QQ QR+ FQQQ
Sbjct: 106 MDAKSKPSIQISQKMLLENPVLELNSNIRPPVQIMQTKPPQNFQLLQQHQQTQRMHFQQQ 165

Query: 171 HMGMMMYSS----GGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGG----SNN 222
               M Y +      +NGGINLKFDGST  CTP   TMSST+S ISSLS+DG       +
Sbjct: 166 QQQQMKYQADRVYSRSNGGINLKFDGST--CTP---TMSSTRSFISSLSMDGAVSTFDGD 220

Query: 223 SFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAIS 282
           SFHLIG+P  S  ISQ +++RC S R EDG+ KCS+SGKCHCSKRRK RVKRSIKVPAIS
Sbjct: 221 SFHLIGMPHSSDHISQQTRRRC-SGRGEDGNAKCSSSGKCHCSKRRKLRVKRSIKVPAIS 279

Query: 283 NKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYE 342
           NKVADIPPDEY+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+PSMLIVTYE
Sbjct: 280 NKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLEDPSMLIVTYE 339

Query: 343 GEHNHSRIMQSSQSAHT 359
           GEHNHSR++ SSQSAHT
Sbjct: 340 GEHNHSRLI-SSQSAHT 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131226|ref|XP_002328486.1| predicted protein [Populus trichocarpa] gi|222838201|gb|EEE76566.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/378 (60%), Positives = 265/378 (70%), Gaps = 44/378 (11%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVEEA+K A+ESC RV+ LL Q  KD +Q     RNL +ET E VFKFKRV+SLLS G
Sbjct: 1   MEEVEEAHKAAIESCNRVIGLLCQ-PKDQVQ----GRNLMVETGETVFKFKRVISLLSTG 55

Query: 61  TT--RVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSS 118
               RVRKL+K        S+LPQNIFLDSPN    K IL+PKPLQ++PP+  F  TP  
Sbjct: 56  LGHGRVRKLKKFR------SSLPQNIFLDSPNC---KTILAPKPLQMVPPN--FLETPLG 104

Query: 119 SSIRREKLST-------FNNNNNNNNNNRSPALQMA-TPSQSLQQFLYQQQIQRLQFQQQ 170
               + KL           N     N+N  P LQ+A T   + Q     QQIQR+ FQQQ
Sbjct: 105 DMDAKSKLPVQIAQKMFLENPVLELNSNTRPPLQIAQTKPPNFQFPQQHQQIQRVHFQQQ 164

Query: 171 HMGMM-----MYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNN--- 222
              M      +YS   +N GINLKFDGST  C P   TMSST+S ISSLS+DG  +N   
Sbjct: 165 QQQMKYQVDRVYSR--SNSGINLKFDGST--CAP---TMSSTRSFISSLSMDGTVSNFDG 217

Query: 223 -SFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAI 281
            SFHLIG+P  S  ISQ ++++C S + EDG+ KC++ GKCHCSKRRK RVKRSIKVPAI
Sbjct: 218 DSFHLIGMPHSSDHISQQTRRKC-SGKGEDGNAKCASGGKCHCSKRRKLRVKRSIKVPAI 276

Query: 282 SNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTY 341
           SNKVADIPPDEY+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC EEPSMLIVTY
Sbjct: 277 SNKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERCLEEPSMLIVTY 336

Query: 342 EGEHNHSRIMQSSQSAHT 359
           EG+HNHSR++ SSQSAHT
Sbjct: 337 EGDHNHSRLI-SSQSAHT 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087892|emb|CBI35175.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 214/365 (58%), Positives = 246/365 (67%), Gaps = 67/365 (18%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           ME VEEANK AVESC+RVL+ L Q      Q   QYRNL +ET+E VFKFKRVVSLL++G
Sbjct: 1   MEGVEEANKSAVESCHRVLSFLCQP-----QDQVQYRNLMMETEEAVFKFKRVVSLLNNG 55

Query: 61  T--TRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSS 118
               RVRK R+        S+LPQ+IFL++PN    KP  SPKPLQ++P +      P  
Sbjct: 56  FGHERVRKFRR------LRSSLPQSIFLETPNY---KPNPSPKPLQLLPTNFLENPLPEI 106

Query: 119 SSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYS 178
            S  + K                P LQ+                  +++Q      MMYS
Sbjct: 107 DSKAKIK----------------PPLQI------------------MKYQAD----MMYS 128

Query: 179 SGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGG----SNNSFHLIGVPQHSS 234
              +N GINLKFDGS+  CTP   TMSST+S ISSLS+DG       NSFHLIGVPQ S 
Sbjct: 129 R--SNSGINLKFDGSS--CTP---TMSSTRSFISSLSMDGSVANLDGNSFHLIGVPQLSD 181

Query: 235 QISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYT 294
             S   ++RC S R EDGS+KC +SGKCHCSKRRK RVKRSIKVPAISNKVADIPPDEY+
Sbjct: 182 PNSHQPRRRC-SGRGEDGSVKCGSSGKCHCSKRRKLRVKRSIKVPAISNKVADIPPDEYS 240

Query: 295 WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSS 354
           WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+PSMLIVTYEGEHNHSR++ SS
Sbjct: 241 WRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHSRLL-SS 299

Query: 355 QSAHT 359
           QSAHT
Sbjct: 300 QSAHT 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463956|ref|XP_002270614.1| PREDICTED: probable WRKY transcription factor 74-like [Vitis vinifera]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/385 (57%), Positives = 256/385 (66%), Gaps = 49/385 (12%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           ME VEEANK AVESC+RVL+ L Q      Q   QYRNL +ET+E VFKFKRVVSLL++G
Sbjct: 1   MEGVEEANKSAVESCHRVLSFLCQP-----QDQVQYRNLMMETEEAVFKFKRVVSLLNNG 55

Query: 61  T--TRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSS 118
               RVRK R+        S+LPQ+IFL++PN    KP  SPKPLQ++P +      P  
Sbjct: 56  FGHERVRKFRR------LRSSLPQSIFLETPNY---KPNPSPKPLQLLPTNFLENPLPEI 106

Query: 119 SSIRREKLST-----FNNNNNNNNNNRSPALQMA--TPSQSLQQFLYQQQIQRLQFQ--- 168
            S  +  L         +  ++  ++  P LQ+    PSQ  Q    Q      Q Q   
Sbjct: 107 DSKAKSSLQITPKIFLESQASDIVSSVKPPLQIVQQKPSQHYQFLQQQHHHHHHQQQQQQ 166

Query: 169 ----------QQHMGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDG 218
                      ++   MMYS   +N GINLKFDGS+  CTP   TMSST+S ISSLS+DG
Sbjct: 167 IQRIQFQKQQMKYQADMMYSR--SNSGINLKFDGSS--CTP---TMSSTRSFISSLSMDG 219

Query: 219 G----SNNSFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKR 274
                  NSFHLIGVPQ S   S   ++RC S R EDGS+KC +SGKCHCSKRRK RVKR
Sbjct: 220 SVANLDGNSFHLIGVPQLSDPNSHQPRRRC-SGRGEDGSVKCGSSGKCHCSKRRKLRVKR 278

Query: 275 SIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEP 334
           SIKVPAISNKVADIPPDEY+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+P
Sbjct: 279 SIKVPAISNKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDP 338

Query: 335 SMLIVTYEGEHNHSRIMQSSQSAHT 359
           SMLIVTYEGEHNHSR++ SSQSAHT
Sbjct: 339 SMLIVTYEGEHNHSRLL-SSQSAHT 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540816|gb|AEQ29021.1| WRKY8, partial [Panax quinquefolius]

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/363 (54%), Positives = 242/363 (66%), Gaps = 29/363 (7%)

Query: 3   EVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHGT- 61
           EVEEANK AVESC+RVL+L+SQ      Q   QYRNL +ET E V KF++VVSLL+ G  
Sbjct: 2   EVEEANKAAVESCHRVLSLISQP-----QDQIQYRNLVVETGEAVLKFEKVVSLLNAGLG 56

Query: 62  -TRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSSSS 120
             RVRK+ K      TP   PQNI LD+P   + +P   PK +Q++P +        + S
Sbjct: 57  HARVRKIEKI----QTP--FPQNILLDNP---IGRPDYQPKAIQLLPANSLDTPIHDNGS 107

Query: 121 IRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSG 180
             R  L T  N++   ++N   +LQ+   +        QQ+ Q  Q Q +    MM+   
Sbjct: 108 NVRSTL-TLGNSSLELSSNGKNSLQIPQQTPPSNYHFLQQKFQLQQQQLKQQAEMMFRR- 165

Query: 181 GNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGG----SNNSFHLIGVPQHSSQI 236
            +N GINL FD ST  CTP   TMSST+S ISSLS+DG       N+FHLIG  +   Q 
Sbjct: 166 -SNSGINLNFDSST--CTP---TMSSTRSFISSLSVDGSVANMEGNAFHLIGATRSLDQS 219

Query: 237 SQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWR 296
           S   K+RC S++ +DGS+KC +SG+CHCSK+RKHRVKRSIKVPAISNK+ADIPPDEY+WR
Sbjct: 220 SYQHKRRC-SAKGDDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWR 278

Query: 297 KYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQS 356
           KYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+PSMLIVTYEGEHNH RI   SQ 
Sbjct: 279 KYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPVQSQP 338

Query: 357 AHT 359
             T
Sbjct: 339 HET 341

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082746|ref|XP_002306823.1| predicted protein [Populus trichocarpa] gi|222856272|gb|EEE93819.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 194/363 (53%), Positives = 243/363 (66%), Gaps = 36/363 (9%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           ME VEEAN+ AVESC+RV++LLSQ      Q   QYRNL +ET E VF+FK+VVSLL+ G
Sbjct: 1   MEGVEEANRAAVESCHRVISLLSQP-----QDQVQYRNLMVETGEAVFRFKKVVSLLNTG 55

Query: 61  T--TRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTP-- 116
               RVRKL+K       P+ L Q+I LD+P ++   P  +P+ LQ      + E+ P  
Sbjct: 56  LGHARVRKLKK------LPTPLSQSILLDNPLSSTDHPSKTPQFLQS---SSYLESQPIQ 106

Query: 117 SSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQ-----QFLYQQQIQRLQFQQQH 171
              SI +  LS    +   ++N ++P LQ+  P+ +       Q    +   + Q Q + 
Sbjct: 107 ELGSIAKNCLSLGTPSLELSSNGKNP-LQLGQPTPAAHYQFLQQQQLHRLQLQQQQQMKQ 165

Query: 172 MGMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLDGGSNN----SFHLI 227
              MM+    +N GI+L FD S+  CTP   TMSST+S ISSLS+DG   N    +FHL 
Sbjct: 166 QAEMMFRK--SNSGISLNFDSSS--CTP---TMSSTRSFISSLSIDGNVANLEGSAFHLT 218

Query: 228 GVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVAD 287
           G  + S Q SQ  K++C S R EDGS+KC +S +CHCSK+RKHRVKRSIKVPAISNK+AD
Sbjct: 219 GAARSSDQSSQQHKRKC-SGRGEDGSMKCGSSVRCHCSKKRKHRVKRSIKVPAISNKLAD 277

Query: 288 IPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           IPPD+Y+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+PSMLIVTYEGEHNH
Sbjct: 278 IPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNH 337

Query: 348 SRI 350
            RI
Sbjct: 338 PRI 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559953|ref|XP_002520995.1| WRKY transcription factor, putative [Ricinus communis] gi|223539832|gb|EEF41412.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/386 (51%), Positives = 246/386 (63%), Gaps = 60/386 (15%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVEEAN+ AVESC+RVL+LLS+      Q   QYRNL  ET E VFKFKRV+SLL+ G
Sbjct: 1   MEEVEEANRTAVESCHRVLSLLSK-----PQDQVQYRNLMAETGEAVFKFKRVISLLNSG 55

Query: 61  T--TRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIPPHDFFETTPSS 118
               RVRKL+K       P+ + QNI LD+P+     P  + + LQ            SS
Sbjct: 56  LGHARVRKLKK------LPTPISQNILLDNPHHRTDHPSKNYQFLQ------------SS 97

Query: 119 SSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHM------ 172
           S +  + +    +N+ ++    +P+L+++T  ++      Q       F QQ        
Sbjct: 98  SYLDNQPIQELGSNSKSSLCLGTPSLELSTNGKNPLHVAQQTPSPHYHFLQQQQQLQLQQ 157

Query: 173 ---------------GMMMYSSGGNNGGINLKFDGSTSCCTPSNMTMSSTKSLISSLSLD 217
                            +M+    +N GINL FD S+  CTP   TMSS +S ISSLS+D
Sbjct: 158 RIQLQQQHQQQMKQQAEIMFRK--SNSGINLNFDNSS--CTP---TMSSNRSFISSLSID 210

Query: 218 GGSNN----SFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVK 273
           G   N    +FHLIG P+ S Q SQ  K++C S R EDGS+KC +SG+CHCSK+RKHRVK
Sbjct: 211 GSVTNMEGSAFHLIGGPRASDQSSQQHKRKC-SGRGEDGSVKCGSSGRCHCSKKRKHRVK 269

Query: 274 RSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEE 333
           RSIKVPAISNK+ADIPPD+Y+WRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC E+
Sbjct: 270 RSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLED 329

Query: 334 PSMLIVTYEGEHNHSRIMQSSQSAHT 359
           PSMLIVTYEGEHNH RI   +QSA+T
Sbjct: 330 PSMLIVTYEGEHNHPRI--PTQSANT 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206574999|gb|ACI14408.1| WRKY74-1 transcription factor [Brassica napus]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 202/375 (53%), Positives = 242/375 (64%), Gaps = 50/375 (13%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVE ANK AVESC+ VLNLLSQ   DP       ++L +ET E V KFKRV SLL+ G
Sbjct: 1   MEEVEAANKEAVESCHGVLNLLSQQTSDP-------KSLLVETREAVIKFKRVTSLLTRG 53

Query: 61  TT---RVRKLRKNYLKPTTPSNLPQNIFLDSP---NTNLS--KPILSPKPLQVIPPHDFF 112
                +++KL  NY K  +P  LPQ IFL+SP   N  ++   P+L+PKPLQVIPP    
Sbjct: 54  LGGQRKIKKLNNNYYKFMSPL-LPQYIFLESPICSNNAITGCTPVLAPKPLQVIPP---- 108

Query: 113 ETTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPS-QSLQQFLYQQQIQRLQFQQQH 171
              PS    R         N     +     L++  PS +++ Q  YQ       F + H
Sbjct: 109 -AAPSYGEQRPVHPPPMMLNQKMCVDKS--FLELKPPSLRAVDQKPYQ-------FIRNH 158

Query: 172 MGMMMYSSGGNNGGINLKFDGSTS---CCTPSNMTMSSTKSLISSLSLDGG----SNNSF 224
              + Y S   N G+NLKFDGS     C +PS    + ++S +SSLS+DG       NSF
Sbjct: 159 QQGVYYRS---NSGLNLKFDGSGGGGSCYSPS--VSNGSRSFVSSLSMDGSVTDYDRNSF 213

Query: 225 HLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNK 284
           HLIG+PQ +  +SQHS++   S     GSLKC    KCHCSK+RK RVKRSIKVPAISNK
Sbjct: 214 HLIGLPQGADHMSQHSRRTSCS-----GSLKCGNKSKCHCSKKRKLRVKRSIKVPAISNK 268

Query: 285 VADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGE 344
           +ADIPPDEY+WRKYGQKPI+GSPHPRGYYKCSSVRGCPARKHVERC +E SMLIVTYEGE
Sbjct: 269 IADIPPDEYSWRKYGQKPIRGSPHPRGYYKCSSVRGCPARKHVERCVDETSMLIVTYEGE 328

Query: 345 HNHSRIMQSSQSAHT 359
           HNH+RI  SSQSAHT
Sbjct: 329 HNHARI--SSQSAHT 341

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241875|ref|NP_198217.1| putative WRKY transcription factor 74 [Arabidopsis thaliana] gi|332278119|sp|Q93WU6.2|WRK74_ARATH RecName: Full=Probable WRKY transcription factor 74; AltName: Full=WRKY DNA-binding protein 74 gi|17064168|gb|AAL35291.1|AF442398_1 WRKY transcription factor 74 [Arabidopsis thaliana] gi|332006441|gb|AED93824.1| putative WRKY transcription factor 74 [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 201/372 (54%), Positives = 243/372 (65%), Gaps = 55/372 (14%)

Query: 1   MEEVEEANKIAVESCYRVLNLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVVSLLSHG 60
           MEEVE ANK AVESC+ VLNLLSQ   D        +++ +ET E V KFKRV SLLS G
Sbjct: 1   MEEVEAANKAAVESCHGVLNLLSQQTNDS-------KSIMVETREAVCKFKRVSSLLSRG 53

Query: 61  TT--RVRKLRKNYLKPTTPSNLPQNIFLDSP---NTNLSK--PILSPKPLQVIPPHDFFE 113
               +++KL  N  K ++ S LPQ++FL+SP   N  +S   PIL+PKPLQ++P      
Sbjct: 54  LGQRKIKKLNNNNYKFSS-SLLPQHMFLESPVCSNNAISGCIPILAPKPLQIVPAGP--- 109

Query: 114 TTPSSSSIRREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQFQQQHMG 173
                       L  FN N   + +     L++  PS    + +  +  Q +   QQ   
Sbjct: 110 ----------PPLMLFNQNMCLDKS----FLELKPPS---SRAVDPKPYQFIHTHQQG-- 150

Query: 174 MMMYSSGGNNGGINLKFDGS--TSCCTPSNMTMSSTKSLISSLSLDGG----SNNSFHLI 227
             +YS   +  G+NLKFDGS   SC +PS    + ++S +SSLS+DG       NSFHLI
Sbjct: 151 --VYSR--SKSGLNLKFDGSIGASCYSPS--ISNGSRSFVSSLSMDGSVTDYDRNSFHLI 204

Query: 228 GVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVAD 287
           G+PQ S  ISQHS++   S     GSLKC +  KCHCSK+RK RVKRSIKVPAISNK+AD
Sbjct: 205 GLPQGSDHISQHSRRTSCS-----GSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIAD 259

Query: 288 IPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
           IPPDEY+WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERC EE SMLIVTYEGEHNH
Sbjct: 260 IPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNH 319

Query: 348 SRIMQSSQSAHT 359
           SRI+ SSQSAHT
Sbjct: 320 SRIL-SSQSAHT 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2148815	330	WRKY74 "WRKY DNA-binding prote	0.467	0.509	0.646	1.2e-77
TAIR|locus:2084943	330	WRKY39 "WRKY DNA-binding prote	0.459	0.5	0.644	3.7e-74
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.451	0.426	0.580	3.3e-63
UNIPROTKB|Q32SG4	397	Q32SG4 "Protein WRKY1" [Zea ma	0.456	0.413	0.556	2.3e-58
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.325	0.36	0.652	4.2e-47
TAIR|locus:2046653	321	WRKY17 "WRKY DNA-binding prote	0.320	0.358	0.644	1.6e-45
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.300	0.340	0.688	5.3e-45
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.284	0.288	0.705	2.3e-44
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.256	0.355	0.525	2.9e-23
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.228	0.192	0.540	2.1e-22

TAIR|locus:2148815 WRKY74 "WRKY DNA-binding protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 115/178 (64%), Positives = 126/178 (70%)

Query:   186 INLKFDGS--TSCCTPS--NMTMXXXXXXXXXXXXXXXXXXXFHLIGVPXXXXXXXXXXK 241
             +NLKFDGS   SC +PS  N +                    FHLIG+P          +
Sbjct:   159 LNLKFDGSIGASCYSPSISNGSRSFVSSLSMDGSVTDYDRNSFHLIGLPQGSDHISQHSR 218

Query:   242 KRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQK 301
             +   S     GSLKC +  KCHCSK+RK RVKRSIKVPAISNK+ADIPPDEY+WRKYGQK
Sbjct:   219 RTSCS-----GSLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQK 273

Query:   302 PIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAHT 359
             PIKGSPHPRGYYKCSSVRGCPARKHVERC EE SMLIVTYEGEHNHSRI+ SSQSAHT
Sbjct:   274 PIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRIL-SSQSAHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2084943 WRKY39 "WRKY DNA-binding protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 114/177 (64%), Positives = 125/177 (70%)

Query:   186 INLKFDGS-TSCCTPS--NMTMXXXXXXXXXXXXXXXXXXXFHLIGVPXXXXXXXXXXKK 242
             +NLKFDGS +SC TPS  N +                    FHL G+           +K
Sbjct:   163 VNLKFDGSGSSCYTPSVSNGSRSFVSSLSMDASVTDYDRNSFHLTGL--SRGSDQQHTRK 220

Query:   243 RCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKP 302
              C       GSLKC +  KCHCSK+RK RVKRSIKVPAISNK+ADIPPDEY+WRKYGQKP
Sbjct:   221 MC------SGSLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKP 274

Query:   303 IKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAHT 359
             IKGSPHPRGYYKCSSVRGCPARKHVERC +E SMLIVTYEGEHNHSRI+ SSQSAHT
Sbjct:   275 IKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRIL-SSQSAHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 97/167 (58%), Positives = 116/167 (69%)

Query:   186 INLKFDGSTSCCTP--SNMTMXXXXXXXXXXXXXXXXXXXFHLIGVPXXXXXXXXXXKKR 243
             I+L FD S+  CTP  S+                      FH  GVP          K++
Sbjct:   210 ISLSFDNSS--CTPTMSSTRSFVSSLSIDGSVANIEGKNSFHF-GVPSSTDQNSLHSKRK 266

Query:   244 CFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPI 303
             C     E GSLKC +S +CHC+K+RKHRV+RSI+VPAISNKVADIPPD+Y+WRKYGQKPI
Sbjct:   267 CPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPI 326

Query:   304 KGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI 350
             KGSP+PRGYYKCSS+RGCPARKHVERC E+P+MLIVTYE EHNH ++
Sbjct:   327 KGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKL 373

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

UNIPROTKB|Q32SG4 Q32SG4 "Protein WRKY1" [Zea mays (taxid:4577)]

 Score = 498 (180.4 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 94/169 (55%), Positives = 118/169 (69%)

Query:   186 INLKFDGSTSCCTPSNMTMXXXXXXXXXXXXXXXXXXX--FHLI-GVPXXXXXXXXXXKK 242
             +NLKFD S++C   S+ +                      F L+ G            ++
Sbjct:   227 VNLKFD-SSNCTASSSRSFLSSLSMEGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQR 285

Query:   243 RCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKP 302
             R  + R EDG+ +C+T  +CHCSK+RK R++RSIKVPAISNKVADIP DE++WRKYGQKP
Sbjct:   286 RRCAGR-EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKP 344

Query:   303 IKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIM 351
             IKGSPHPRGYYKCSSVRGCPARKHVERC ++PSMLIVTYEG+HNH+R++
Sbjct:   345 IKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVL 393

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 79/121 (65%), Positives = 97/121 (80%)

Query:   241 KKRCFS---SRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRK 297
             +KRC     S +  G +  S  GKCHC K RK+R+KR+++VPAIS K+ADIPPDEY+WRK
Sbjct:   194 RKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRK 253

Query:   298 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSR-IMQSSQS 356
             YGQKPIKGSPHPRGYYKCS+ RGCPARKHVER  ++P+MLIVTYEGEH H++  MQ + S
Sbjct:   254 YGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQSAMQENIS 313

Query:   357 A 357
             +
Sbjct:   314 S 314

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2046653 WRKY17 "WRKY DNA-binding protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 78/121 (64%), Positives = 94/121 (77%)

Query:   241 KKRCFS---SRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRK 297
             +KRCF    S    G +  S +GKCHC K RK+R+KR+++VPA+S K+ADIPPDEY+WRK
Sbjct:   191 RKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRK 250

Query:   298 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSA 357
             YGQKPIKGSPHPRGYYKCS+ RGCPARKHVER  ++ +MLIVTYEGEH H    QS+   
Sbjct:   251 YGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHH---QSTMQE 307

Query:   358 H 358
             H
Sbjct:   308 H 308

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 75/109 (68%), Positives = 91/109 (83%)

Query:   241 KKRCFSSRAEDGSL-KCSTSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYG 299
             K++C S     G     S+SG+CHCSK+RK + +R I+VPAIS K++D+PPD+Y+WRKYG
Sbjct:   190 KRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYG 249

Query:   300 QKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHS 348
             QKPIKGSPHPRGYYKCSSVRGCPARKHVER  ++ SMLIVTYEG+HNHS
Sbjct:   250 QKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHS 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 72/102 (70%), Positives = 89/102 (87%)

Query:   257 STSGKCHCSKRRKHRVKRSIKVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCS 316
             S S +CHCSK+RK RVKR I+VPA+S+K+ADIP DE++WRKYGQKPIKGSPHPRGYYKCS
Sbjct:   248 SPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCS 307

Query:   317 SVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSSQSAH 358
             SVRGCPARKHVER  ++  MLIVTYEG+HNH+ +++++   H
Sbjct:   308 SVRGCPARKHVERALDDAMMLIVTYEGDHNHALVLETTTMNH 349

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/99 (52%), Positives = 66/99 (66%)

Query:   263 HCSKRRKHRV-KRSIKVP-----AISNKVADIPP-DEYTWRKYGQKPIKGSPHPRGYYKC 315
             H  KR +  V KR + VP        +K    PP D + WRKYGQKPIKGSP+PRGYY+C
Sbjct:    40 HSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRC 99

Query:   316 SSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRIMQSS 354
             SS +GCPARK VER  ++P+M+++TY  EHNH   + SS
Sbjct:   100 SSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLTSS 138

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/87 (54%), Positives = 65/87 (74%)

Query:   266 KRRKHRVKRSIKVPA---ISNKVAD--IPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRG 320
             KRRK + K+ + +PA   ++++ +   +P D + WRKYGQKPIKGSP+PRGYY+CSS +G
Sbjct:   186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKG 245

Query:   321 CPARKHVERCPEEPSMLIVTYEGEHNH 347
             C ARK VER   +P+ML++TY  EHNH
Sbjct:   246 CSARKQVERSRTDPNMLVITYTSEHNH 272

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WU6	WRK74_ARATH	No assigned EC number	0.5403	0.8830	0.9606	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
smart00774	59	smart00774, WRKY, DNA binding domain	2e-34
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-32
pfam10533	47	pfam10533, Plant_zn_clust, Plant zinc cluster doma	4e-19

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  120 bits (304), Expect = 2e-34
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347
             D Y WRKYGQK IKGSP+PR YY+C+  +GCPA+K V+R  ++PS++ VTYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  115 bits (290), Expect = 2e-32
 Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHS 348
             D Y WRKYGQKP+KGSP PR YY+C+S  GCP +K VER  ++P ++ +TYEGEHNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 349 R 349
           +
Sbjct: 60  K 60

Length = 60

>gnl|CDD|192617 pfam10533, Plant_zn_clust, Plant zinc cluster domain

 Score = 79.3 bits (196), Expect = 4e-19
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 241 KKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVAD 287
           KKRC  +   +G    S+SG+CHCSK+RK RVKR+I+VPAIS+K+AD
Sbjct: 1   KKRCSEANDSEGKCAASSSGRCHCSKKRKSRVKRTIRVPAISSKIAD 47

This zinc binding domain was identified by Babu and colleagues and found associated with the WRKY domain pfam03106. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	99.31
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.95
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	89.38

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=1.2e-30  Score=199.45  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=56.8

Q ss_pred             CCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCC
Q 018255          289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH  347 (359)
Q Consensus       289 p~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h  347 (359)
                      ++|||.|||||||.|+|+++||+||||++..||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999997689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=8.9e-31  Score=200.14  Aligned_cols=60  Identities=62%  Similarity=1.267  Sum_probs=51.9

Q ss_pred             CCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCC
Q 018255          289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSR  349 (359)
Q Consensus       289 p~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~  349 (359)
                      .+|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            37999999999999999999999999996 5999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=99.31  E-value=1.4e-12  Score=96.03  Aligned_cols=46  Identities=63%  Similarity=1.185  Sum_probs=36.5

Q ss_pred             cccccCCCcCC-CCCcccCCCCcccCccccccccceeEeecccCCccC
Q 018255          241 KKRCFSSRAED-GSLKCSTSGKCHCSKRRKHRVKRSIKVPAISNKVAD  287 (359)
Q Consensus       241 ~~~c~~~~~~d-~~~~~~~~~rch~skrrK~r~kr~~~vpais~~~~d  287 (359)
                      +++|+. ++++ +..+|+++++|||+||||.|+||+|+||||+.+++|
T Consensus         1 krkC~~-~~~~~~~~~~sssgrCHCsKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen    1 KRKCHS-HNDSSGKCKCSSSGRCHCSKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccc-cCcccCccccCCCCcccCCCcccccceeeEEeecccccccC
Confidence            478943 3222 333367899999999999999999999999999875

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.95  E-value=0.14  Score=37.14  Aligned_cols=49  Identities=31%  Similarity=0.582  Sum_probs=24.1

Q ss_pred             CCCCccccccCCCCCCCCCCCCccccccCC--CCCCcccceeecCCCCceEEEEEeccCCC
Q 018255          289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSV--RGCPARKHVERCPEEPSMLIVTYEGEHNH  347 (359)
Q Consensus       289 p~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~--~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h  347 (359)
                      .-|||.-+++...      ....|++|+..  .+|+|+=.+.  .++..+  +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~~--~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGRV--VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTEE--EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCEE--EECCCccCC
Confidence            3588877665544      33589999962  3799987777  444433  345599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=89.38  E-value=0.3  Score=38.55  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=26.7

Q ss_pred             CCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255          318 VRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI  350 (359)
Q Consensus       318 ~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~  350 (359)
                      ..||+|+=.|.+.. |....++.+..+|||+..
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            35899998888877 777778889999999865

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-16
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-16

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 282 SNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTY 341
           +  + DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +LI TY
Sbjct: 7   TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTY 65
Query: 342 EGEHNHS 348
           EG+H+H 
Sbjct: 66  EGKHDHD 72

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 287 DIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHN 346
           D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+HN
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 347 H 347
           H
Sbjct: 74  H 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-35
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  122 bits (309), Expect = 2e-35
 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 277 KVPAISNKVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSM 336
           ++   +  + DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKL 60

Query: 337 LIVTYEGEHNH 347
           LI TYEG+H+H
Sbjct: 61  LITTYEGKHDH 71

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  121 bits (304), Expect = 1e-34
 Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 286 ADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEH 345
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 14  VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 72

Query: 346 NH 347
           NH
Sbjct: 73  NH 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 61/265 (23%)

Query: 33  HHQYRNLALETDEVVFKFKRVVSLLSHGTTRVRKLRKNY-LKPTTPSNLPQNIF------ 85
           HH + ++  ET E  +++K ++S+             N+  K     ++P++I       
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVF------EDAFVDNFDCKDV--QDMPKSILSKEEID 52

Query: 86  --LDSPN----TNLSKPILSPKPLQVI---------PPHDF----FETTPSSSSIRREKL 126
             + S +    T      L  K  +++           + F     +T     S+     
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 127 STFNNNNNNNNNNRSP-ALQMATPSQSLQQFLYQQQIQRLQFQQQHMGMMMYSSGG---- 181
               +   N+N   +   +    P   L+Q L   +++  +      G+      G    
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRPAKNVLID-GV-----LGSGKT 164

Query: 182 -------NNGGINLKFDG-----STSCCTPSNMTMSSTKSLISSLSLDGGSNNSFHLIGV 229
                   +  +  K D      +   C      +   + L+  +  +  S +  H   +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNI 223

Query: 230 PQHSSQISQHSKKRCFSSRAEDGSL 254
                 I Q   +R   S+  +  L
Sbjct: 224 KLRIHSI-QAELRRLLKSKPYENCL 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 49/318 (15%), Positives = 102/318 (32%), Gaps = 84/318 (26%)

Query: 20  NLLSQHNKDPLQVHHQYRNLALETDEVVFKFKRVV-------SLL--------------S 58
            LL Q + +         N+ L    +  + +R++        LL              +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 59  HG-----TTRVRKLRKNYLKPTTPSNLPQNIFLDSPNTNLSKPILSPKPLQVIP---PHD 110
                  TTR +++  ++L   T +++  +    +   +  K +L  K L   P   P +
Sbjct: 264 LSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPRE 321

Query: 111 FFETTPSSSSI----RREKLSTFNNNNNNNNNNRSPALQMATPSQSLQQFLYQQQIQRLQ 166
              T P   SI     R+ L+T++N  + N +  +  ++      SL   L   + +++ 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNV-LEPAEYRKM- 374

Query: 167 FQQQHMGMMMYSSGGNNGGINLK------FDGSTSCCTPSNMTMSSTKSLISSLSLDGGS 220
           F +  + +   S+      I         FD   S        M     L     ++   
Sbjct: 375 FDR--LSVFPPSA-----HIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEKQP 421

Query: 221 NNSFHLIGVPQHSSQISQHSKKRCFSSRAEDGSLKCSTSGKCHCSKRRKHRVKRSIKVPA 280
             S   I     S  +    K         + +L        H S    + + ++     
Sbjct: 422 KESTISI----PSIYLELKVK------LENEYAL--------HRSIVDHYNIPKTFD--- 460

Query: 281 ISNKVADIPPDEYTWRKY 298
            S+ +     D+Y +  +
Sbjct: 461 -SDDLIPPYLDQY-FYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=1.8e-32  Score=217.53  Aligned_cols=65  Identities=58%  Similarity=1.139  Sum_probs=62.3

Q ss_pred             ccCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255          285 VADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI  350 (359)
Q Consensus       285 ~~dip~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~  350 (359)
                      ..++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus        10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            468899999999999999999999999999995 79999999999999999999999999999987

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=5.3e-32  Score=215.81  Aligned_cols=66  Identities=53%  Similarity=1.059  Sum_probs=62.6

Q ss_pred             CccCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255          284 KVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI  350 (359)
Q Consensus       284 ~~~dip~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~  350 (359)
                      ...++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus        12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            3458899999999999999999999999999996 89999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	6e-28

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (255), Expect = 6e-28
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 286 ADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEH 345
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 7   VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 65

Query: 346 NHSR 349
           NH  
Sbjct: 66  NHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.3e-32  Score=214.11  Aligned_cols=64  Identities=55%  Similarity=1.101  Sum_probs=61.2

Q ss_pred             cCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255          286 ADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI  350 (359)
Q Consensus       286 ~dip~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~  350 (359)
                      .++++|||.|||||||.|+|++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus         7 ~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           7 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             cccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            47889999999999999999999999999995 79999999999999999999999999999876